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Conserved domains on  [gi|487416090|ref|WP_001683478|]
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4Fe-4S mono-cluster protein YjdI [Escherichia coli]

Protein Classification

(4Fe-4S)-binding protein( domain architecture ID 10536444)

(4Fe-4S)-binding protein contains a divergent 4Fe-4S mono-cluster, similar to Escherichia coli YjdI

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Fer4_19 pfam06902
Divergent 4Fe-4S mono-cluster; Members of this family contain three highly conserved cysteine ...
 13-76 1.67e-35

Divergent 4Fe-4S mono-cluster; Members of this family contain three highly conserved cysteine residues. This family includes proteins containing divergent domains which are most likely to bind to iron-sulfur clusters.


:

Pssm-ID: 399707  Cd Length: 64  Bit Score: 114.38  E-value: 1.67e-35
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 487416090  13 YTGENIDVYFNTAICQHSGNCVRGNGKLFNLKRKPWIMPDEVDVTTVVKVIDMCPSGALKYRHK 76
Cdd:pfam06902  1 YTGEDITIYDNPALCSHAGFCVRGLPGVFDLGRKPWIDPDGASTEEIIKVIDRCPSGALSYVEK 64
 
Name Accession Description Interval E-value
Fer4_19 pfam06902
Divergent 4Fe-4S mono-cluster; Members of this family contain three highly conserved cysteine ...
 13-76 1.67e-35

Divergent 4Fe-4S mono-cluster; Members of this family contain three highly conserved cysteine residues. This family includes proteins containing divergent domains which are most likely to bind to iron-sulfur clusters.


Pssm-ID: 399707  Cd Length: 64  Bit Score: 114.38  E-value: 1.67e-35
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 487416090  13 YTGENIDVYFNTAICQHSGNCVRGNGKLFNLKRKPWIMPDEVDVTTVVKVIDMCPSGALKYRHK 76
Cdd:pfam06902  1 YTGEDITIYDNPALCSHAGFCVRGLPGVFDLGRKPWIDPDGASTEEIIKVIDRCPSGALSYVEK 64
YjdI COG3592
Uncharacterized Fe-S cluster protein YjdI [Function unknown];
6-76 6.15e-33

Uncharacterized Fe-S cluster protein YjdI [Function unknown];


Pssm-ID: 442811 [Multi-domain]  Cd Length: 71  Bit Score: 108.08  E-value: 6.15e-33
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 487416090  6 LDGGYRCYTGENIDVYFNTAICQHSGNCVRGNGKLFNLKRKPWIMPDEVDVTTVVKVIDMCPSGALKYRHK 76
Cdd:COG3592   1 MKEKIKEYSGEEITVVWDPELCIHSGNCVKGLPEVFDPKRKPWINPDNASTEEIIEQIDRCPSGALSYRRN 71
 
Name Accession Description Interval E-value
Fer4_19 pfam06902
Divergent 4Fe-4S mono-cluster; Members of this family contain three highly conserved cysteine ...
 13-76 1.67e-35

Divergent 4Fe-4S mono-cluster; Members of this family contain three highly conserved cysteine residues. This family includes proteins containing divergent domains which are most likely to bind to iron-sulfur clusters.


Pssm-ID: 399707  Cd Length: 64  Bit Score: 114.38  E-value: 1.67e-35
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 487416090  13 YTGENIDVYFNTAICQHSGNCVRGNGKLFNLKRKPWIMPDEVDVTTVVKVIDMCPSGALKYRHK 76
Cdd:pfam06902  1 YTGEDITIYDNPALCSHAGFCVRGLPGVFDLGRKPWIDPDGASTEEIIKVIDRCPSGALSYVEK 64
YjdI COG3592
Uncharacterized Fe-S cluster protein YjdI [Function unknown];
6-76 6.15e-33

Uncharacterized Fe-S cluster protein YjdI [Function unknown];


Pssm-ID: 442811 [Multi-domain]  Cd Length: 71  Bit Score: 108.08  E-value: 6.15e-33
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 487416090  6 LDGGYRCYTGENIDVYFNTAICQHSGNCVRGNGKLFNLKRKPWIMPDEVDVTTVVKVIDMCPSGALKYRHK 76
Cdd:COG3592   1 MKEKIKEYSGEEITVVWDPELCIHSGNCVKGLPEVFDPKRKPWINPDNASTEEIIEQIDRCPSGALSYRRN 71
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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