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Conserved domains on  [gi|487470484|ref|WP_001695277|]
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phage tail protein [Escherichia coli]

Protein Classification

phage tail protein( domain architecture ID 11242959)

phage tail protein containing bacterial Ig-like (BIg) domain(s) (group 2); similar to Escherichia virus Lambda tail tube protein (GpV or major tail protein V) that assembles in hexameric rings that stack on top of each other and forms the phage's tail tube composed of 32 hexameric disks

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Phage_TTP_12 pfam16461
Lambda phage tail tube protein, TTP; This family represents the phage-tail-tube protein from a ...
18-152 7.41e-73

Lambda phage tail tube protein, TTP; This family represents the phage-tail-tube protein from a set of Siphoviridae from Gammaproteobacteria. Tail tube proteins polymerize with the assistance of the Tail-tip complex, a tape measure protein and two chaperones. Infectivity of host is delivered through the tube


:

Pssm-ID: 406780  Cd Length: 134  Bit Score: 218.10  E-value: 7.41e-73
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487470484   18 WVYKGNGDPYANPLSDVDWSRLAKVKDLTPGELTAESYDDSYLDDEDaDWTATGQGQKSAGDTSFTLAWMPGEQGQQALL 97
Cdd:pfam16461   1 WIYDGTGDPYANPLSDADWLRLAEVKELTPGELTADSIDDTHLDSPN-DWRETIQGLKSAGETSFTLNWKPGEDTDQLLV 79
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 487470484   98 AWFNEGDTRAYKIRFPNGTVDVFRGWVSSIGKAVTAKEVITRTVKVTNVGRPSMA 152
Cdd:pfam16461  80 ALFASGAVRQYRIKFPNGTVDVFEGWISSLGKTVTAKEVMTRTVKITVTGRPSIA 134
Big_2 pfam02368
Bacterial Ig-like domain (group 2); This family consists of bacterial domains with an Ig-like ...
162-241 2.88e-14

Bacterial Ig-like domain (group 2); This family consists of bacterial domains with an Ig-like fold. Members of this family are found in bacterial and phage surface proteins such as intimins.


:

Pssm-ID: 396788 [Multi-domain]  Cd Length: 77  Bit Score: 65.88  E-value: 2.88e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487470484  162 TGMTVTPASTSVVKGQSTTLTVAFQPEGATDKSFRAVSADKTKATVSvsgMTITVKGVAAGKVNIPVVSGNGELAAVAEI 241
Cdd:pfam02368   1 TSVTVSPTSVTVLVGATQQLTVYVTPSNASDKKVTWTSSNGSVATVS---QTGLVTGVAAGKATITATSKDGNDKATKTV 77
 
Name Accession Description Interval E-value
Phage_TTP_12 pfam16461
Lambda phage tail tube protein, TTP; This family represents the phage-tail-tube protein from a ...
18-152 7.41e-73

Lambda phage tail tube protein, TTP; This family represents the phage-tail-tube protein from a set of Siphoviridae from Gammaproteobacteria. Tail tube proteins polymerize with the assistance of the Tail-tip complex, a tape measure protein and two chaperones. Infectivity of host is delivered through the tube


Pssm-ID: 406780  Cd Length: 134  Bit Score: 218.10  E-value: 7.41e-73
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487470484   18 WVYKGNGDPYANPLSDVDWSRLAKVKDLTPGELTAESYDDSYLDDEDaDWTATGQGQKSAGDTSFTLAWMPGEQGQQALL 97
Cdd:pfam16461   1 WIYDGTGDPYANPLSDADWLRLAEVKELTPGELTADSIDDTHLDSPN-DWRETIQGLKSAGETSFTLNWKPGEDTDQLLV 79
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 487470484   98 AWFNEGDTRAYKIRFPNGTVDVFRGWVSSIGKAVTAKEVITRTVKVTNVGRPSMA 152
Cdd:pfam16461  80 ALFASGAVRQYRIKFPNGTVDVFEGWISSLGKTVTAKEVMTRTVKITVTGRPSIA 134
Big_2 pfam02368
Bacterial Ig-like domain (group 2); This family consists of bacterial domains with an Ig-like ...
162-241 2.88e-14

Bacterial Ig-like domain (group 2); This family consists of bacterial domains with an Ig-like fold. Members of this family are found in bacterial and phage surface proteins such as intimins.


Pssm-ID: 396788 [Multi-domain]  Cd Length: 77  Bit Score: 65.88  E-value: 2.88e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487470484  162 TGMTVTPASTSVVKGQSTTLTVAFQPEGATDKSFRAVSADKTKATVSvsgMTITVKGVAAGKVNIPVVSGNGELAAVAEI 241
Cdd:pfam02368   1 TSVTVSPTSVTVLVGATQQLTVYVTPSNASDKKVTWTSSNGSVATVS---QTGLVTGVAAGKATITATSKDGNDKATKTV 77
BID_2 smart00635
Bacterial Ig-like domain 2;
160-240 1.22e-06

Bacterial Ig-like domain 2;


Pssm-ID: 214752 [Multi-domain]  Cd Length: 81  Bit Score: 45.08  E-value: 1.22e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487470484   160 AATGMTVTPASTSVVKGQSTTLTVAFQPEGAT-DKSFRAVSADKTKATVsVSGMTITVKGVAAGKVNIPVVSGNGELAAV 238
Cdd:smart00635   1 VVTSVTVTPTTASVKKGLTLQLTATVTPSSAGvTGKVTWTSSNPSVATV-VNASGLVVTAVAAGTATITATSGDGSSATG 79

                   ..
gi 487470484   239 AE 240
Cdd:smart00635  80 VI 81
YjdB COG5492
Uncharacterized conserved protein YjdB, contains Ig-like domain [General function prediction ...
114-246 1.32e-05

Uncharacterized conserved protein YjdB, contains Ig-like domain [General function prediction only];


Pssm-ID: 444243 [Multi-domain]  Cd Length: 613  Bit Score: 45.84  E-value: 1.32e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487470484 114 NGTVDVFRGWVSSIGKAVTAKEVITRTVKVTNVGRPSMAEDRSTVTAATGMTVTPASTSVVKGQSTTLTVAFQPEGATDK 193
Cdd:COG5492  298 SSAATTSAVVGTLSSSGGGGGVVTAAATTGVTVVTASSVATTVDVVPVTGVTLNPTSVTLAVGQTLTLTATVTPANATNK 377
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|...
gi 487470484 194 SFRAVSADKTKATVSVSGmtiTVKGVAAGKVNIPVVSGNGELAAVAEINVTNS 246
Cdd:COG5492  378 NVTWSSSDPSVATVDSNG---LVTAVAAGTATITATTKDGGKTATCTVTVTAA 427
 
Name Accession Description Interval E-value
Phage_TTP_12 pfam16461
Lambda phage tail tube protein, TTP; This family represents the phage-tail-tube protein from a ...
18-152 7.41e-73

Lambda phage tail tube protein, TTP; This family represents the phage-tail-tube protein from a set of Siphoviridae from Gammaproteobacteria. Tail tube proteins polymerize with the assistance of the Tail-tip complex, a tape measure protein and two chaperones. Infectivity of host is delivered through the tube


Pssm-ID: 406780  Cd Length: 134  Bit Score: 218.10  E-value: 7.41e-73
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487470484   18 WVYKGNGDPYANPLSDVDWSRLAKVKDLTPGELTAESYDDSYLDDEDaDWTATGQGQKSAGDTSFTLAWMPGEQGQQALL 97
Cdd:pfam16461   1 WIYDGTGDPYANPLSDADWLRLAEVKELTPGELTADSIDDTHLDSPN-DWRETIQGLKSAGETSFTLNWKPGEDTDQLLV 79
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 487470484   98 AWFNEGDTRAYKIRFPNGTVDVFRGWVSSIGKAVTAKEVITRTVKVTNVGRPSMA 152
Cdd:pfam16461  80 ALFASGAVRQYRIKFPNGTVDVFEGWISSLGKTVTAKEVMTRTVKITVTGRPSIA 134
Big_2 pfam02368
Bacterial Ig-like domain (group 2); This family consists of bacterial domains with an Ig-like ...
162-241 2.88e-14

Bacterial Ig-like domain (group 2); This family consists of bacterial domains with an Ig-like fold. Members of this family are found in bacterial and phage surface proteins such as intimins.


Pssm-ID: 396788 [Multi-domain]  Cd Length: 77  Bit Score: 65.88  E-value: 2.88e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487470484  162 TGMTVTPASTSVVKGQSTTLTVAFQPEGATDKSFRAVSADKTKATVSvsgMTITVKGVAAGKVNIPVVSGNGELAAVAEI 241
Cdd:pfam02368   1 TSVTVSPTSVTVLVGATQQLTVYVTPSNASDKKVTWTSSNGSVATVS---QTGLVTGVAAGKATITATSKDGNDKATKTV 77
BID_2 smart00635
Bacterial Ig-like domain 2;
160-240 1.22e-06

Bacterial Ig-like domain 2;


Pssm-ID: 214752 [Multi-domain]  Cd Length: 81  Bit Score: 45.08  E-value: 1.22e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487470484   160 AATGMTVTPASTSVVKGQSTTLTVAFQPEGAT-DKSFRAVSADKTKATVsVSGMTITVKGVAAGKVNIPVVSGNGELAAV 238
Cdd:smart00635   1 VVTSVTVTPTTASVKKGLTLQLTATVTPSSAGvTGKVTWTSSNPSVATV-VNASGLVVTAVAAGTATITATSGDGSSATG 79

                   ..
gi 487470484   239 AE 240
Cdd:smart00635  80 VI 81
YjdB COG5492
Uncharacterized conserved protein YjdB, contains Ig-like domain [General function prediction ...
114-246 1.32e-05

Uncharacterized conserved protein YjdB, contains Ig-like domain [General function prediction only];


Pssm-ID: 444243 [Multi-domain]  Cd Length: 613  Bit Score: 45.84  E-value: 1.32e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487470484 114 NGTVDVFRGWVSSIGKAVTAKEVITRTVKVTNVGRPSMAEDRSTVTAATGMTVTPASTSVVKGQSTTLTVAFQPEGATDK 193
Cdd:COG5492  298 SSAATTSAVVGTLSSSGGGGGVVTAAATTGVTVVTASSVATTVDVVPVTGVTLNPTSVTLAVGQTLTLTATVTPANATNK 377
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|...
gi 487470484 194 SFRAVSADKTKATVSVSGmtiTVKGVAAGKVNIPVVSGNGELAAVAEINVTNS 246
Cdd:COG5492  378 NVTWSSSDPSVATVDSNG---LVTAVAAGTATITATTKDGGKTATCTVTVTAA 427
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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