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Conserved domains on  [gi|487749125|ref|WP_001831116|]
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MULTISPECIES: hypothetical protein [Staphylococcus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
T4P_ComGE NF041013
competence type IV pilus minor pilin ComGE;
7-81 5.70e-04

competence type IV pilus minor pilin ComGE;


:

Pssm-ID: 468942 [Multi-domain]  Cd Length: 83  Bit Score: 35.64  E-value: 5.70e-04
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 487749125  7 KGSLIIDALLAFFIVSTITMILIPMFSNLNNQYLINLNNIKIKQIMITSLQHYKKKELYQGVVIE----NYEIQLFNNK 81
Cdd:NF041013  4 KGFILLESLVALALLALIVSLLLPSLTQIQKEREEIKQKEEALQVLYEALQTYQLHLELNGVEITversNTQIKVYWEG 82
 
Name Accession Description Interval E-value
T4P_ComGE NF041013
competence type IV pilus minor pilin ComGE;
7-81 5.70e-04

competence type IV pilus minor pilin ComGE;


Pssm-ID: 468942 [Multi-domain]  Cd Length: 83  Bit Score: 35.64  E-value: 5.70e-04
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 487749125  7 KGSLIIDALLAFFIVSTITMILIPMFSNLNNQYLINLNNIKIKQIMITSLQHYKKKELYQGVVIE----NYEIQLFNNK 81
Cdd:NF041013  4 KGFILLESLVALALLALIVSLLLPSLTQIQKEREEIKQKEEALQVLYEALQTYQLHLELNGVEITversNTQIKVYWEG 82
seadorna_VP9 TIGR04237
seadornavirus/coltivirus VP9 protein; This model, broader than related pfam08978, describes ...
 4-55 8.88e-03

seadornavirus/coltivirus VP9 protein; This model, broader than related pfam08978, describes proteins VP9 in Coltivirus, and proteins with various designations in the seadornavirus group: VP9 in Banna virus, VP10 in Liao ning virus, and VP11 in Kadipiro virus.


Pssm-ID: 211960  Cd Length: 280  Bit Score: 33.80  E-value: 8.88e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 487749125    4 YKFKGSLIIDALLAFFIVSTITMILIPMFSNLNNQYLINLNNIKIKQIMITS 55
Cdd:TIGR04237  68 HTFNGDFARFMAWAFIMHGQLLMHARPVAVRMNMQYATNVAGSAVKATNVAS 119
 
Name Accession Description Interval E-value
T4P_ComGE NF041013
competence type IV pilus minor pilin ComGE;
7-81 5.70e-04

competence type IV pilus minor pilin ComGE;


Pssm-ID: 468942 [Multi-domain]  Cd Length: 83  Bit Score: 35.64  E-value: 5.70e-04
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 487749125  7 KGSLIIDALLAFFIVSTITMILIPMFSNLNNQYLINLNNIKIKQIMITSLQHYKKKELYQGVVIE----NYEIQLFNNK 81
Cdd:NF041013  4 KGFILLESLVALALLALIVSLLLPSLTQIQKEREEIKQKEEALQVLYEALQTYQLHLELNGVEITversNTQIKVYWEG 82
seadorna_VP9 TIGR04237
seadornavirus/coltivirus VP9 protein; This model, broader than related pfam08978, describes ...
 4-55 8.88e-03

seadornavirus/coltivirus VP9 protein; This model, broader than related pfam08978, describes proteins VP9 in Coltivirus, and proteins with various designations in the seadornavirus group: VP9 in Banna virus, VP10 in Liao ning virus, and VP11 in Kadipiro virus.


Pssm-ID: 211960  Cd Length: 280  Bit Score: 33.80  E-value: 8.88e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 487749125    4 YKFKGSLIIDALLAFFIVSTITMILIPMFSNLNNQYLINLNNIKIKQIMITS 55
Cdd:TIGR04237  68 HTFNGDFARFMAWAFIMHGQLLMHARPVAVRMNMQYATNVAGSAVKATNVAS 119
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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