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Conserved domains on  [gi|487750559|ref|WP_001832414|]
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MULTISPECIES: SarA family transcriptional regulator [Staphylococcus]

Protein Classification

SarA family transcriptional regulator( domain architecture ID 10020028)

SarA family transcriptional regulator similar to staphylococcal accessory regulators SarA, SarS, SarT, SarU, SarX

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Staph_reg_Sar TIGR01889
staphylococcal accessory regulator family; This model represents a family of transcriptional ...
 6-114 3.92e-26

staphylococcal accessory regulator family; This model represents a family of transcriptional regulatory proteins in Staphylococcus aureus and Staphylococcus epidermidis. Some members contain two tandem copies of this region. This family is related to the MarR transcriptional regulator family described by pfam01047. [Regulatory functions, DNA interactions]


:

Pssm-ID: 130944  Cd Length: 109  Bit Score: 93.47  E-value: 3.92e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487750559    6 QRFIESERELSQLKHWLKTTYRISIEEFVVLYKVYADTKISGKELRDTLHFEMLWDTSKIDVIIRKIYKKELISKLRSET 85
Cdd:TIGR01889   1 KDLLSLYLYIKSLKRYLKKEFNLSLEELLILYYLGKLENNEGKLTLKEIIKEILIKQSALVKIIKKLSKKGYLSKERSED 80

                          90       100
                  ....*....|....*....|....*....
gi 487750559   86 DERQVYYFFDAKQKKLLDKMTGEIETISI 114
Cdd:TIGR01889  81 DERKVIISINKEQRSKIESLISEIEQIIK 109
 
Name Accession Description Interval E-value
Staph_reg_Sar TIGR01889
staphylococcal accessory regulator family; This model represents a family of transcriptional ...
 6-114 3.92e-26

staphylococcal accessory regulator family; This model represents a family of transcriptional regulatory proteins in Staphylococcus aureus and Staphylococcus epidermidis. Some members contain two tandem copies of this region. This family is related to the MarR transcriptional regulator family described by pfam01047. [Regulatory functions, DNA interactions]


Pssm-ID: 130944  Cd Length: 109  Bit Score: 93.47  E-value: 3.92e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487750559    6 QRFIESERELSQLKHWLKTTYRISIEEFVVLYKVYADTKISGKELRDTLHFEMLWDTSKIDVIIRKIYKKELISKLRSET 85
Cdd:TIGR01889   1 KDLLSLYLYIKSLKRYLKKEFNLSLEELLILYYLGKLENNEGKLTLKEIIKEILIKQSALVKIIKKLSKKGYLSKERSED 80

                          90       100
                  ....*....|....*....|....*....
gi 487750559   86 DERQVYYFFDAKQKKLLDKMTGEIETISI 114
Cdd:TIGR01889  81 DERKVIISINKEQRSKIESLISEIEQIIK 109
 
Name Accession Description Interval E-value
Staph_reg_Sar TIGR01889
staphylococcal accessory regulator family; This model represents a family of transcriptional ...
 6-114 3.92e-26

staphylococcal accessory regulator family; This model represents a family of transcriptional regulatory proteins in Staphylococcus aureus and Staphylococcus epidermidis. Some members contain two tandem copies of this region. This family is related to the MarR transcriptional regulator family described by pfam01047. [Regulatory functions, DNA interactions]


Pssm-ID: 130944  Cd Length: 109  Bit Score: 93.47  E-value: 3.92e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487750559    6 QRFIESERELSQLKHWLKTTYRISIEEFVVLYKVYADTKISGKELRDTLHFEMLWDTSKIDVIIRKIYKKELISKLRSET 85
Cdd:TIGR01889   1 KDLLSLYLYIKSLKRYLKKEFNLSLEELLILYYLGKLENNEGKLTLKEIIKEILIKQSALVKIIKKLSKKGYLSKERSED 80

                          90       100
                  ....*....|....*....|....*....
gi 487750559   86 DERQVYYFFDAKQKKLLDKMTGEIETISI 114
Cdd:TIGR01889  81 DERKVIISINKEQRSKIESLISEIEQIIK 109
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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