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Conserved domains on  [gi|487890026|ref|WP_001963492|]
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glycosyltransferase family 8 protein [Helicobacter pylori]

Protein Classification

glycosyltransferase family 8 protein( domain architecture ID 10135893)

glycosyltransferase family 8 protein catalyzes the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds; similar to Streptococcus pneumoniae glycosyltransferases GlyB and GlyF

CATH:  3.90.550.10
CAZY:  GT8
EC:  2.4.-.-
Gene Ontology:  GO:0016757|GO:0006486
SCOP:  3000077

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
GT8_A4GalT_like cd04194
A4GalT_like proteins catalyze the addition of galactose or glucose residues to the ...
5-298 2.52e-56

A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface; The members of this family of glycosyltransferases catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The enzymes exhibit broad substrate specificities. The known functions found in this family include: Alpha-1,4-galactosyltransferase, LOS-alpha-1,3-D-galactosyltransferase, UDP-glucose:(galactosyl) LPS alpha1,2-glucosyltransferase, UDP-galactose: (glucosyl) LPS alpha1,2-galactosyltransferase, and UDP-glucose:(glucosyl) LPS alpha1,2-glucosyltransferase. Alpha-1,4-galactosyltransferase from N. meningitidis adds an alpha-galactose from UDP-Gal (the donor) to a terminal lactose (the acceptor) of the LOS structure of outer membrane. LOSs are virulence factors that enable the organism to evade the immune system of host cells. In E. coli, the three alpha-1,2-glycosyltransferases, that are involved in the synthesis of the outer core region of the LPS, are all members of this family. The three enzymes share 40 % of sequence identity, but have different sugar donor or acceptor specificities, representing the structural diversity of LPS.


:

Pssm-ID: 133037 [Multi-domain]  Cd Length: 248  Bit Score: 184.73  E-value: 2.52e-56
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487890026   5 IPIVIAFDNHYAIPAGVSLYSMLACaksenpksqnpqlqndNKKLFYKIHCLVDNLSLENQQKLKETLAPFsaFASVDFL 84
Cdd:cd04194    1 MNIVFAIDDNYAPYLAVTIKSILAN----------------NSKRDYDFYILNDDISEENKKKLKELLKKY--NSSIEFI 62
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487890026  85 DISEPshstikidpfaidkiheaFSQLNIYAKTRFSKMVMCRLFLASLFPQYDKIIMFDADTLFLNDVSESFFIPLDSYY 164
Cdd:cd04194   63 KIDND------------------DFKFFPATTDHISYATYYRLLIPDLLPDYDKVLYLDADIIVLGDLSELFDIDLGDNL 124
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487890026 165 FGAAKDFSSPKNLKHFQTEREREPrqkfslyehylkekdmkiicENHYNVGFLIVNLKLWRADKLEEHLLNLTHQKGQCV 244
Cdd:cd04194  125 LAAVRDPFIEQEKKRKRRLGGYDD--------------------GSYFNSGVLLINLKKWREENITEKLLELIKEYGGRL 184
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 487890026 245 FCPEQDLLTLACYQKVLQLPYIYNAHPFMANQKRFVPNQQE--------IIMLHFYFVGKPW 298
Cdd:cd04194  185 IYPDQDILNAVLKDKILYLPPRYNFQTGFYYLLKKKSKEEQeleearknPVIIHYTGSDKPW 246
 
Name Accession Description Interval E-value
GT8_A4GalT_like cd04194
A4GalT_like proteins catalyze the addition of galactose or glucose residues to the ...
5-298 2.52e-56

A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface; The members of this family of glycosyltransferases catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The enzymes exhibit broad substrate specificities. The known functions found in this family include: Alpha-1,4-galactosyltransferase, LOS-alpha-1,3-D-galactosyltransferase, UDP-glucose:(galactosyl) LPS alpha1,2-glucosyltransferase, UDP-galactose: (glucosyl) LPS alpha1,2-galactosyltransferase, and UDP-glucose:(glucosyl) LPS alpha1,2-glucosyltransferase. Alpha-1,4-galactosyltransferase from N. meningitidis adds an alpha-galactose from UDP-Gal (the donor) to a terminal lactose (the acceptor) of the LOS structure of outer membrane. LOSs are virulence factors that enable the organism to evade the immune system of host cells. In E. coli, the three alpha-1,2-glycosyltransferases, that are involved in the synthesis of the outer core region of the LPS, are all members of this family. The three enzymes share 40 % of sequence identity, but have different sugar donor or acceptor specificities, representing the structural diversity of LPS.


Pssm-ID: 133037 [Multi-domain]  Cd Length: 248  Bit Score: 184.73  E-value: 2.52e-56
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487890026   5 IPIVIAFDNHYAIPAGVSLYSMLACaksenpksqnpqlqndNKKLFYKIHCLVDNLSLENQQKLKETLAPFsaFASVDFL 84
Cdd:cd04194    1 MNIVFAIDDNYAPYLAVTIKSILAN----------------NSKRDYDFYILNDDISEENKKKLKELLKKY--NSSIEFI 62
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487890026  85 DISEPshstikidpfaidkiheaFSQLNIYAKTRFSKMVMCRLFLASLFPQYDKIIMFDADTLFLNDVSESFFIPLDSYY 164
Cdd:cd04194   63 KIDND------------------DFKFFPATTDHISYATYYRLLIPDLLPDYDKVLYLDADIIVLGDLSELFDIDLGDNL 124
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487890026 165 FGAAKDFSSPKNLKHFQTEREREPrqkfslyehylkekdmkiicENHYNVGFLIVNLKLWRADKLEEHLLNLTHQKGQCV 244
Cdd:cd04194  125 LAAVRDPFIEQEKKRKRRLGGYDD--------------------GSYFNSGVLLINLKKWREENITEKLLELIKEYGGRL 184
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 487890026 245 FCPEQDLLTLACYQKVLQLPYIYNAHPFMANQKRFVPNQQE--------IIMLHFYFVGKPW 298
Cdd:cd04194  185 IYPDQDILNAVLKDKILYLPPRYNFQTGFYYLLKKKSKEEQeleearknPVIIHYTGSDKPW 246
RfaJ COG1442
Lipopolysaccharide biosynthesis protein, LPS:glycosyltransferase [Cell wall/membrane/envelope ...
1-351 3.76e-55

Lipopolysaccharide biosynthesis protein, LPS:glycosyltransferase [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 441051 [Multi-domain]  Cd Length: 301  Bit Score: 183.25  E-value: 3.76e-55
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487890026   1 MSITIPIVIAFDNHYAIPAGVSLYSMLACaksenpksqnpqlqndNKKLFYKIHCLVDNLSLENQQKLKETLAPFSAfaS 80
Cdd:COG1442    2 NKNTINIVFAIDDNYLPGLGVSIASLLEN----------------NPDRPYDFHILTDGLSDENKERLEALAAKYNV--S 63
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487890026  81 VDFLDISEpshstikidpfaidkihEAFSQLNIyaKTRFSKMVMCRLFLASLFP-QYDKIIMFDADTLFLNDVSESFFIP 159
Cdd:COG1442   64 IEFIDVDD-----------------ELLKDLPV--SKHISKATYYRLLIPELLPdDYDKVLYLDADTLVLGDLSELWDID 124
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487890026 160 LDSYYFGAAKDFSSPKNLKHfqtereREPRQKFSLYEHYlkekdmkiicenhYNVGFLIVNLKLWRADKLEEHLLNLTHQ 239
Cdd:COG1442  125 LGGNLLAAVRDGTVTGSQKK------RAKRLGLPDDDGY-------------FNSGVLLINLKKWREENITEKALEFLKE 185
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487890026 240 KGQCVFCPEQDLLTLACYQKVLQLPYIYNAHPFMANQKRFVPNQQEI-------IMLHFYFVGKPWILP-TFSYSKEWHE 311
Cdd:COG1442  186 NPDKLKYPDQDILNIVLGGKVKFLPPRYNYQYSLYYELKDKSNKKELlearknpVIIHYTGPTKPWHKWcTHPYADLYWE 265
                        330       340       350       360
                 ....*....|....*....|....*....|....*....|
gi 487890026 312 ILLKTPFYAEysvkFLKQMTECLSLKDKQKTFEFLAPLLN 351
Cdd:COG1442  266 YLKKTPWKDI----PLKKALRYKQLRKKAKHLRYLKGIKN 301
Glyco_transf_8 pfam01501
Glycosyl transferase family 8; This family includes enzymes that transfer sugar residues to ...
6-298 1.05e-31

Glycosyl transferase family 8; This family includes enzymes that transfer sugar residues to donor molecules. Members of this family are involved in lipopolysaccharide biosynthesis and glycogen synthesis. This family includes Lipopolysaccharide galactosyltransferase, lipopolysaccharide glucosyltransferase 1, and glycogenin glucosyltransferase.


Pssm-ID: 279798 [Multi-domain]  Cd Length: 252  Bit Score: 120.12  E-value: 1.05e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487890026    6 PIVIAFDNHYAIPAGVSLYSmlacaksenpksqnpqLQNDNKKLFYKIHCLVDNLSLENQQKLKETLAPFSAFASVDFLD 85
Cdd:pfam01501   1 CIALALDKNYLLGASVSIKS----------------LLKNNSDFALNFHIFTDDIPVENLDILNWLASSYKPVLPLLESD 64
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487890026   86 ISEPSHSTIKIDPFaidkiheafsqlniyaKTRFSKMVMCRLFLASLFPQYDKIIMFDADTLFLNDVSESFFIPLDSYYF 165
Cdd:pfam01501  65 IKIFEYFSKLKLRS----------------PKYWSLLNYLRLYLPDLFPKLDKILYLDADIVVQGDLSPLWDIDLGGKVL 128
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487890026  166 GAAKDfsspKNLKHFQTEREREPRQKFSLYEHYlkekdmkiicenhYNVGFLIVNLKLWRADKLEEHLLNL--THQKGQC 243
Cdd:pfam01501 129 AAVED----NYFQRYPNFSEPIILENFGPPACY-------------FNAGMLLFDLDAWRKENITERYIKWlnLNENRTL 191
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 487890026  244 VFCPEQDLLTLACYQKVLQLPYIYNAHPFMANQKRFVPN--QQEIIMLHFYFVGKPW 298
Cdd:pfam01501 192 WKLGDQDPLNIVFYGKVKPLDPRWNVLGLGYYNKKKSLNeiTENAAVIHYNGPTKPW 248
 
Name Accession Description Interval E-value
GT8_A4GalT_like cd04194
A4GalT_like proteins catalyze the addition of galactose or glucose residues to the ...
5-298 2.52e-56

A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface; The members of this family of glycosyltransferases catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The enzymes exhibit broad substrate specificities. The known functions found in this family include: Alpha-1,4-galactosyltransferase, LOS-alpha-1,3-D-galactosyltransferase, UDP-glucose:(galactosyl) LPS alpha1,2-glucosyltransferase, UDP-galactose: (glucosyl) LPS alpha1,2-galactosyltransferase, and UDP-glucose:(glucosyl) LPS alpha1,2-glucosyltransferase. Alpha-1,4-galactosyltransferase from N. meningitidis adds an alpha-galactose from UDP-Gal (the donor) to a terminal lactose (the acceptor) of the LOS structure of outer membrane. LOSs are virulence factors that enable the organism to evade the immune system of host cells. In E. coli, the three alpha-1,2-glycosyltransferases, that are involved in the synthesis of the outer core region of the LPS, are all members of this family. The three enzymes share 40 % of sequence identity, but have different sugar donor or acceptor specificities, representing the structural diversity of LPS.


Pssm-ID: 133037 [Multi-domain]  Cd Length: 248  Bit Score: 184.73  E-value: 2.52e-56
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487890026   5 IPIVIAFDNHYAIPAGVSLYSMLACaksenpksqnpqlqndNKKLFYKIHCLVDNLSLENQQKLKETLAPFsaFASVDFL 84
Cdd:cd04194    1 MNIVFAIDDNYAPYLAVTIKSILAN----------------NSKRDYDFYILNDDISEENKKKLKELLKKY--NSSIEFI 62
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487890026  85 DISEPshstikidpfaidkiheaFSQLNIYAKTRFSKMVMCRLFLASLFPQYDKIIMFDADTLFLNDVSESFFIPLDSYY 164
Cdd:cd04194   63 KIDND------------------DFKFFPATTDHISYATYYRLLIPDLLPDYDKVLYLDADIIVLGDLSELFDIDLGDNL 124
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487890026 165 FGAAKDFSSPKNLKHFQTEREREPrqkfslyehylkekdmkiicENHYNVGFLIVNLKLWRADKLEEHLLNLTHQKGQCV 244
Cdd:cd04194  125 LAAVRDPFIEQEKKRKRRLGGYDD--------------------GSYFNSGVLLINLKKWREENITEKLLELIKEYGGRL 184
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 487890026 245 FCPEQDLLTLACYQKVLQLPYIYNAHPFMANQKRFVPNQQE--------IIMLHFYFVGKPW 298
Cdd:cd04194  185 IYPDQDILNAVLKDKILYLPPRYNFQTGFYYLLKKKSKEEQeleearknPVIIHYTGSDKPW 246
RfaJ COG1442
Lipopolysaccharide biosynthesis protein, LPS:glycosyltransferase [Cell wall/membrane/envelope ...
1-351 3.76e-55

Lipopolysaccharide biosynthesis protein, LPS:glycosyltransferase [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 441051 [Multi-domain]  Cd Length: 301  Bit Score: 183.25  E-value: 3.76e-55
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487890026   1 MSITIPIVIAFDNHYAIPAGVSLYSMLACaksenpksqnpqlqndNKKLFYKIHCLVDNLSLENQQKLKETLAPFSAfaS 80
Cdd:COG1442    2 NKNTINIVFAIDDNYLPGLGVSIASLLEN----------------NPDRPYDFHILTDGLSDENKERLEALAAKYNV--S 63
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487890026  81 VDFLDISEpshstikidpfaidkihEAFSQLNIyaKTRFSKMVMCRLFLASLFP-QYDKIIMFDADTLFLNDVSESFFIP 159
Cdd:COG1442   64 IEFIDVDD-----------------ELLKDLPV--SKHISKATYYRLLIPELLPdDYDKVLYLDADTLVLGDLSELWDID 124
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487890026 160 LDSYYFGAAKDFSSPKNLKHfqtereREPRQKFSLYEHYlkekdmkiicenhYNVGFLIVNLKLWRADKLEEHLLNLTHQ 239
Cdd:COG1442  125 LGGNLLAAVRDGTVTGSQKK------RAKRLGLPDDDGY-------------FNSGVLLINLKKWREENITEKALEFLKE 185
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487890026 240 KGQCVFCPEQDLLTLACYQKVLQLPYIYNAHPFMANQKRFVPNQQEI-------IMLHFYFVGKPWILP-TFSYSKEWHE 311
Cdd:COG1442  186 NPDKLKYPDQDILNIVLGGKVKFLPPRYNYQYSLYYELKDKSNKKELlearknpVIIHYTGPTKPWHKWcTHPYADLYWE 265
                        330       340       350       360
                 ....*....|....*....|....*....|....*....|
gi 487890026 312 ILLKTPFYAEysvkFLKQMTECLSLKDKQKTFEFLAPLLN 351
Cdd:COG1442  266 YLKKTPWKDI----PLKKALRYKQLRKKAKHLRYLKGIKN 301
Glyco_transf_8 pfam01501
Glycosyl transferase family 8; This family includes enzymes that transfer sugar residues to ...
6-298 1.05e-31

Glycosyl transferase family 8; This family includes enzymes that transfer sugar residues to donor molecules. Members of this family are involved in lipopolysaccharide biosynthesis and glycogen synthesis. This family includes Lipopolysaccharide galactosyltransferase, lipopolysaccharide glucosyltransferase 1, and glycogenin glucosyltransferase.


Pssm-ID: 279798 [Multi-domain]  Cd Length: 252  Bit Score: 120.12  E-value: 1.05e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487890026    6 PIVIAFDNHYAIPAGVSLYSmlacaksenpksqnpqLQNDNKKLFYKIHCLVDNLSLENQQKLKETLAPFSAFASVDFLD 85
Cdd:pfam01501   1 CIALALDKNYLLGASVSIKS----------------LLKNNSDFALNFHIFTDDIPVENLDILNWLASSYKPVLPLLESD 64
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487890026   86 ISEPSHSTIKIDPFaidkiheafsqlniyaKTRFSKMVMCRLFLASLFPQYDKIIMFDADTLFLNDVSESFFIPLDSYYF 165
Cdd:pfam01501  65 IKIFEYFSKLKLRS----------------PKYWSLLNYLRLYLPDLFPKLDKILYLDADIVVQGDLSPLWDIDLGGKVL 128
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487890026  166 GAAKDfsspKNLKHFQTEREREPRQKFSLYEHYlkekdmkiicenhYNVGFLIVNLKLWRADKLEEHLLNL--THQKGQC 243
Cdd:pfam01501 129 AAVED----NYFQRYPNFSEPIILENFGPPACY-------------FNAGMLLFDLDAWRKENITERYIKWlnLNENRTL 191
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 487890026  244 VFCPEQDLLTLACYQKVLQLPYIYNAHPFMANQKRFVPN--QQEIIMLHFYFVGKPW 298
Cdd:pfam01501 192 WKLGDQDPLNIVFYGKVKPLDPRWNVLGLGYYNKKKSLNeiTENAAVIHYNGPTKPW 248
Glyco_transf_8 cd00505
Members of glycosyltransferase family 8 (GT-8) are involved in lipopolysaccharide biosynthesis ...
126-298 7.91e-09

Members of glycosyltransferase family 8 (GT-8) are involved in lipopolysaccharide biosynthesis and glycogen synthesis; Members of this family are involved in lipopolysaccharide biosynthesis and glycogen synthesis. GT-8 comprises enzymes with a number of known activities: lipopolysaccharide galactosyltransferase, lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase, and N-acetylglucosaminyltransferase. GT-8 enzymes contains a conserved DXD motif which is essential in the coordination of a catalytic divalent cation, most commonly Mn2+.


Pssm-ID: 132996 [Multi-domain]  Cd Length: 246  Bit Score: 55.91  E-value: 7.91e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487890026 126 RLFLASLFPQYDKIIMFDADTLFLNDVSESFFIPLDSYYFGAAKDFSSPKNLKHFqtererepRQKFSLYEHylkekdmk 205
Cdd:cd00505   86 KLHLPNLVPDYDKILYVDADILVLTDIDELWDTPLGGQELAAAPDPGDRREGKYY--------RQKRSHLAG-------- 149
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487890026 206 iicENHYNVGFLIVNLKLWR-----ADKLEEHLLNLTHQKGQcvfcpEQDLLTLACYQ---KVLQLPYIYNAHP----FM 273
Cdd:cd00505  150 ---PDYFNSGVFVVNLSKERrnqllKVALEKWLQSLSSLSGG-----DQDLLNTFFKQvpfIVKSLPCIWNVRLtgcyRS 221
                        170       180
                 ....*....|....*....|....*.
gi 487890026 274 AN-QKRFVPNqqeIIMLHFYFVGKPW 298
Cdd:cd00505  222 LNcFKAFVKN---AKVIHFNGPTKPW 244
GT8_Glycogenin cd02537
Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen; Glycogenin ...
41-312 1.35e-05

Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen; Glycogenin initiates the biosynthesis of glycogen by incorporating glucose residues through a self-glucosylation reaction at a Tyr residue, and then acts as substrate for chain elongation by glycogen synthase and branching enzyme. It contains a conserved DxD motif and an N-terminal beta-alpha-beta Rossmann-like fold that are common to the nucleotide-binding domains of most glycosyltransferases. The DxD motif is essential for coordination of the catalytic divalent cation, most commonly Mn2+. Glycogenin can be classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed. It is placed in glycosyltransferase family 8 which includes lipopolysaccharide glucose and galactose transferases and galactinol synthases.


Pssm-ID: 133018 [Multi-domain]  Cd Length: 240  Bit Score: 46.10  E-value: 1.35e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487890026  41 QLQNDNKKlfYKIHCLV-DNLSLENQQKLKETLAPFsafASVDFLDIsePSHSTIKIDPfaidKIHEAFSQLNIYAKTrf 119
Cdd:cd02537   22 SLRKVGSS--YDLVVLVtPGVSEESREALEEVGWIV---REVEPIDP--PDSANLLKRP----RFKDTYTKLRLWNLT-- 88
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487890026 120 skmvmcrlflaslfpQYDKIIMFDADTLFLNDVSESFFIPldsYYFGAAKDFSSPknlkhfqterereprqkfslyeHYL 199
Cdd:cd02537   89 ---------------EYDKVVFLDADTLVLRNIDELFDLP---GEFAAAPDCGWP----------------------DLF 128
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487890026 200 kekdmkiicenhyNVGFLIV--NLKLWRAdkleehLLNLTHQKGQCVFcPEQDLL-----TLACYqkvLQLPYIYNA-HP 271
Cdd:cd02537  129 -------------NSGVFVLkpSEETFND------LLDALQDTPSFDG-GDQGLLnsyfsDRGIW---KRLPFTYNAlKP 185
                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|.
gi 487890026 272 FMANQKRFVPNQQEIIMLHFYFVGKPWILPTFSYSKE----------WHEI 312
Cdd:cd02537  186 LRYLHPEALWFGDEIKVVHFIGGDKPWSWWRDPETKEkddynelhqwWWDI 236
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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