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Conserved domains on  [gi|487956086|ref|WP_002029490|]
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MULTISPECIES: YiaA/YiaB family inner membrane protein [Bacillus]

Protein Classification

YiaAB domain-containing protein( domain architecture ID 10526598)

YiaAB domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
YiaAB super family cl46776
Uncharacterized conserved protein, YiaAB domain [Function unknown];
2-68 6.09e-21

Uncharacterized conserved protein, YiaAB domain [Function unknown];


The actual alignment was detected with superfamily member COG4298:

Pssm-ID: 481116  Cd Length: 88  Bit Score: 78.39  E-value: 6.09e-21
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 487956086  2 RRRNTQAFTFLAWTSFVCALSGMLIGIYTLDETLSVKGYYLIGTLFLTMSCFVLQKTIRDNEEDNER 68
Cdd:COG4298   1 AQKDTPAWILQVWASFAVALGLTAIGIWYLPVDLWTKGYLGMGILFLVTSTFTLAKTLRDRHEADRL 67
 
Name Accession Description Interval E-value
YiaAB COG4298
Uncharacterized conserved protein, YiaAB domain [Function unknown];
2-68 6.09e-21

Uncharacterized conserved protein, YiaAB domain [Function unknown];


Pssm-ID: 443439  Cd Length: 88  Bit Score: 78.39  E-value: 6.09e-21
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 487956086  2 RRRNTQAFTFLAWTSFVCALSGMLIGIYTLDETLSVKGYYLIGTLFLTMSCFVLQKTIRDNEEDNER 68
Cdd:COG4298   1 AQKDTPAWILQVWASFAVALGLTAIGIWYLPVDLWTKGYLGMGILFLVTSTFTLAKTLRDRHEADRL 67
YiaAB pfam05360
yiaA/B two helix domain; This domain consists of two transmembrane helices and a conserved ...
 9-61 5.81e-17

yiaA/B two helix domain; This domain consists of two transmembrane helices and a conserved linking section.


Pssm-ID: 428440 [Multi-domain]  Cd Length: 53  Bit Score: 67.16  E-value: 5.81e-17
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|...
gi 487956086   9 FTFLAWTSFVCALSGMLIGIYTLDETLSVKGYYLIGTLFLTMSCFVLQKTIRD 61
Cdd:pfam05360  1 FIGQSWLSFLLAVVALAIGLWYLPLDLWEKGFYAMGLLFSLFSAFTLQKTVRD 53
PRK11383 PRK11383
YiaB family inner membrane protein;
8-64 8.68e-05

YiaB family inner membrane protein;


Pssm-ID: 105206 [Multi-domain]  Cd Length: 145  Bit Score: 38.09  E-value: 8.68e-05
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 487956086   8 AFTFLAWTSFVCALSGMLIGIYTLDETLSVKGYYLIGTLFLTMSCFVLQKTIRDNEE 64
Cdd:PRK11383  11 AFSIVSWIALVGGIVTYLLGLWNAEMQLNEKGYYFAVLVLGLFSAASYQKTVRDKYE 67
 
Name Accession Description Interval E-value
YiaAB COG4298
Uncharacterized conserved protein, YiaAB domain [Function unknown];
2-68 6.09e-21

Uncharacterized conserved protein, YiaAB domain [Function unknown];


Pssm-ID: 443439  Cd Length: 88  Bit Score: 78.39  E-value: 6.09e-21
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 487956086  2 RRRNTQAFTFLAWTSFVCALSGMLIGIYTLDETLSVKGYYLIGTLFLTMSCFVLQKTIRDNEEDNER 68
Cdd:COG4298   1 AQKDTPAWILQVWASFAVALGLTAIGIWYLPVDLWTKGYLGMGILFLVTSTFTLAKTLRDRHEADRL 67
YiaAB pfam05360
yiaA/B two helix domain; This domain consists of two transmembrane helices and a conserved ...
 9-61 5.81e-17

yiaA/B two helix domain; This domain consists of two transmembrane helices and a conserved linking section.


Pssm-ID: 428440 [Multi-domain]  Cd Length: 53  Bit Score: 67.16  E-value: 5.81e-17
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|...
gi 487956086   9 FTFLAWTSFVCALSGMLIGIYTLDETLSVKGYYLIGTLFLTMSCFVLQKTIRD 61
Cdd:pfam05360  1 FIGQSWLSFLLAVVALAIGLWYLPLDLWEKGFYAMGLLFSLFSAFTLQKTVRD 53
YiaA COG4682
Uncharacterized membrane protein YiaA [Function unknown];
1-65 3.74e-11

Uncharacterized membrane protein YiaA [Function unknown];


Pssm-ID: 443718 [Multi-domain]  Cd Length: 138  Bit Score: 54.61  E-value: 3.74e-11
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 487956086   1 MRRRNTQAFTFLAWTSFVCALSGMLIGIYTLDETLSVKGYYLIGTLFLTMSCFVLQKTIRDNEED 65
Cdd:COG4682    1 MTQKPSAAFIGASWAALLIGFVAYLIGLWNAEMQLNEKGYYFTVLLFGLFSAVSLQKSVRDRLEG 65
YiaA COG4682
Uncharacterized membrane protein YiaA [Function unknown];
6-63 1.83e-05

Uncharacterized membrane protein YiaA [Function unknown];


Pssm-ID: 443718 [Multi-domain]  Cd Length: 138  Bit Score: 39.59  E-value: 1.83e-05
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 487956086   6 TQAFTFLAWTSFVCALSGMLIGIYTLDETLSVKGYYLIGTLFLTMSCFVLQKTIRDNE 63
Cdd:COG4682   69 TDIYYGLSWFSTIASILLLVIGLWNATLLLSEKGFYAMAFLLSLFAAIAVQKNTRDLQ 126
PRK11383 PRK11383
YiaB family inner membrane protein;
8-64 8.68e-05

YiaB family inner membrane protein;


Pssm-ID: 105206 [Multi-domain]  Cd Length: 145  Bit Score: 38.09  E-value: 8.68e-05
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 487956086   8 AFTFLAWTSFVCALSGMLIGIYTLDETLSVKGYYLIGTLFLTMSCFVLQKTIRDNEE 64
Cdd:PRK11383  11 AFSIVSWIALVGGIVTYLLGLWNAEMQLNEKGYYFAVLVLGLFSAASYQKTVRDKYE 67
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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