|
Name |
Accession |
Description |
Interval |
E-value |
| PspF |
COG1221 |
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain ... |
1-799 |
0e+00 |
|
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription, Signal transduction mechanisms];
Pssm-ID: 440834 [Multi-domain] Cd Length: 835 Bit Score: 761.18 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487961443 1 MKRIDLIFNAIQK-------GNYTEGITASELATLLQLDRANVSSDLNKLVKDNRLLKTSTRPVRF-------------- 59
Cdd:COG1221 1 MKRKEKILNYLKEltknlslEKKSEGFTAEEIAEKLGISRNNVSHELNELVKEGKLIKINGRPVLFldkeafeeqfgtkl 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487961443 60 ---YIETNTSLETHSTKG--TSLDTFAIENTSLKIAIEKAKASILYPPNGMHTLLLGETGVGKSMFASLMHEYAIEVEQL 134
Cdd:COG1221 81 kseYSFVELLAEKENNEEeeDPFDNLIGANGSLKNAIEQAKAAILYPPKGLHTLILGPTGVGKSFFAELMYEYAIEIGVL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487961443 135 PKDAPFIVFNCADYANNPQLLLGQLFGIKKGAYTGA-SDQKGLIEKAHEGILFLDEVHRLPPEGQEMLFTFIDRGVYRRL 213
Cdd:COG1221 161 PEDAPFVVFNCADYANNPQLLMSQLFGYVKGAFTGAdKDKEGLIEKADGGILFLDEVHRLPPEGQEMLFTFMDKGIYRRL 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487961443 214 GETENERKARVLIITATTEEPNSFLLKTFTRRIPMTVTLPPLRERTHKERFALLQLFFTNEAIRLRKEIHVSPNTMRAFV 293
Cdd:COG1221 241 GETEKTRKANVRIIFATTEDPESSLLKTFLRRIPMVIKLPSLEERSLEERLELIKHFFKEEAKRLNKPIKVSKEVLKALL 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487961443 294 FYNCPNNIGQLKTDVQIACAKAYSDFVTKKRDSVCVSSTDLPWYMKEGLFIERKSRH----LYQIPNETFVFTGDEGWSK 369
Cdd:COG1221 321 LYDCPGNIGQLKSDIQLACAKAFLNYITNKKEEIEITLSDLPENVKKGLLKLKENREeldkLSEYLEEYLIISPDTEKKL 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487961443 370 HTIKPEGSRS-SIYDYIDYKYEELQARGIEEEELELLIENDIQSFFVQYFNQISKKTSHENVFKIVDRNIVSVCEKIAEL 448
Cdd:COG1221 401 ISEEDEYELPyNFYEIIEDKYEELKSEGLSEEEINKIISKDIESYFKKLIFKLDKSNISEELLLIVVDEVIVNVVEIFEE 480
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487961443 449 AEKYLSKTFDEKVFLALSLHVQTTLQRLQGGKQIHHPQLNQIRTKYKEAFSVAMQCIQLLEEELQITIPIDEAGFLTMFF 528
Cdd:COG1221 481 AEKKLLRYNSSNLFIALSLHLLSTLLRIKKGKKIINPQLNEIKKKYYEEFILAAEAIKIIEEELKILIPDEEEGFILLLL 560
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487961443 529 VVDPIPASQTEVK--VLILAHGNGIATEMANVANELLGIDEVTGI-DMPLHESPKDFLERVKVYMKTLQNVNGLLLLVDM 605
Cdd:COG1221 561 IELKEEKSLSENVivVVVIAHGGAAASSSMAVVNLLLLEVAVAAIdDPPLEVVDVLIEEKTIVVIINKGKGGLLLLLDDG 640
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487961443 606 GSLAYIGDILETEFKIPVRVLSMTSTPHALEAARKAqlgYSLDALYETVKNLTPFYLNVQEEKKKPLSPMKSVILTACLT 685
Cdd:COG1221 641 GSLFGIIIIEEEGIIIVTVVIVSTTTVLEAAARKKL---LELDLDEIIVLEELLKNPLESKKIKISTSKKKKIIVTTIAI 717
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487961443 686 GEGSALAIQKMLENYLRFDKDLIEIIPISIVHEKDLTKMIENIKKERNIICIVTNFDMQIPCLTYHFQDIVNYTAIQPIQ 765
Cdd:COG1221 718 TTGEAGGILILILIIELLDKDLILIIIEILLIIIKEEILEKIIEEKKEVIIIVIISIIPLIIPPIILLLALKLIILIEIL 797
|
810 820 830
....*....|....*....|....*....|....
gi 487961443 766 ELITYEETYAKMADILEQQMQRNDGALLIKTIRY 799
Cdd:COG1221 798 VLLEILIDKEKIENIIKELLSLLNIIIVLLIIDI 831
|
|
| Sigma54_activat |
pfam00158 |
Sigma-54 interaction domain; |
83-245 |
5.94e-55 |
|
Sigma-54 interaction domain;
Pssm-ID: 425491 [Multi-domain] Cd Length: 168 Bit Score: 187.61 E-value: 5.94e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487961443 83 ENTSLKIAIEKAKASILYPpngMHTLLLGETGVGKSMFASLMHEYAieveqLPKDAPFIVFNCADYanNPQLLLGQLFGI 162
Cdd:pfam00158 4 ESPAMQEVLEQAKRVAPTD---APVLITGESGTGKELFARAIHQLS-----PRADGPFVAVNCAAI--PEELLESELFGH 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487961443 163 KKGAYTGA-SDQKGLIEKAHEGILFLDEVHRLPPEGQEMLFTFIDRGVYRRLGETEnERKARVLIITATTEEPNSFLLKT 241
Cdd:pfam00158 74 EKGAFTGAdSDRKGLFELADGGTLFLDEIGELPLELQAKLLRVLQEGEFERVGGTK-PIKVDVRIIAATNRDLEEAVAEG 152
|
....
gi 487961443 242 FTRR 245
Cdd:pfam00158 153 RFRE 156
|
|
| PTS_IIA_man |
cd00006 |
PTS_IIA, PTS system, mannose/sorbose specific IIA subunit. The bacterial phosphoenolpyruvate: ... |
540-660 |
1.84e-30 |
|
PTS_IIA, PTS system, mannose/sorbose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. IIA subunits receive phosphoryl groups from HPr and transfer them to IIB subunits, which in turn phosphorylate the substrate.
Pssm-ID: 237978 [Multi-domain] Cd Length: 122 Bit Score: 116.17 E-value: 1.84e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487961443 540 VKVLILAHGNgIATEMANVANELLGIDE-VTGIDMPLHESPKDFLERVKVYMKTLQNVNGLLLLVDM--GSLAYIGDILE 616
Cdd:cd00006 1 VGIIIATHGG-FASGLLNSAEMILGEQEnVEAIDFPPGESPDDLLEKIKAALAELDSGEGVLILTDLfgGSPNNAAARLS 79
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 487961443 617 TEfKIPVRVLSMTSTPHALEAARKAQLGYSLDALYETVKNLTPF 660
Cdd:cd00006 80 ME-HPPVEVIAGVNLPMLLEAARARELGLSLDELVENALEAGRE 122
|
|
| PEP_resp_reg |
TIGR02915 |
PEP-CTERM-box response regulator transcription factor; Members of this protein family share ... |
108-321 |
8.43e-26 |
|
PEP-CTERM-box response regulator transcription factor; Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC (see SP|Q06065). These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158). [Regulatory functions, DNA interactions]
Pssm-ID: 274348 [Multi-domain] Cd Length: 445 Bit Score: 111.76 E-value: 8.43e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487961443 108 LLLGETGVGKSMFASLMHEYAieveqLPKDAPFIVFNCADYANNpqLLLGQLFGIKKGAYTGASDQ-KGLIEKAHEGILF 186
Cdd:TIGR02915 166 LLLGESGTGKEVLARALHQLS-----DRKDKRFVAINCAAIPEN--LLESELFGYEKGAFTGAVKQtLGKIEYAHGGTLF 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487961443 187 LDEVHRLPPEGQEMLFTFIDRGVYRRLGETEnERKARVLIITATTE------EPNSFLLKTFTRRIPMTVTLPPLRERTh 260
Cdd:TIGR02915 239 LDEIGDLPLNLQAKLLRFLQERVIERLGGRE-EIPVDVRIVCATNQdlkrmiAEGTFREDLFYRIAEISITIPPLRSRD- 316
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 487961443 261 kERFALLQLFFTNE-AIRLRKEIH-VSPNTMRAFVFYNCPNNIGQLKTDVQIACAKAYSDFVT 321
Cdd:TIGR02915 317 -GDAVLLANAFLERfARELKRKTKgFTDDALRALEAHAWPGNVRELENKVKRAVIMAEGNQIT 378
|
|
| PRK10365 |
PRK10365 |
sigma-54-dependent response regulator transcription factor ZraR; |
99-335 |
5.80e-21 |
|
sigma-54-dependent response regulator transcription factor ZraR;
Pssm-ID: 182412 [Multi-domain] Cd Length: 441 Bit Score: 97.02 E-value: 5.80e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487961443 99 LYPPNGMHTLLLGETGVGKSMFASLMHEYAIEveqlpKDAPFIVFNCAdyANNPQLLLGQLFGIKKGAYTGASDQK-GLI 177
Cdd:PRK10365 157 LVAPSEATVLIHGDSGTGKELVARAIHASSAR-----SEKPLVTLNCA--ALNESLLESELFGHEKGAFTGADKRReGRF 229
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487961443 178 EKAHEGILFLDEVHRLPPEGQEMLFTFIDRGVYRRLGETENeRKARVLIITAT----TEEPNS--FLLKTFTRRIPMTVT 251
Cdd:PRK10365 230 VEADGGTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQT-ISVDVRLIAAThrdlAAEVNAgrFRQDLYYRLNVVAIE 308
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487961443 252 LPPLRERthKERFALL-QLFFTNEAIRLRKEIH-VSPNTMRAFVFYNCPNNIGQLKTDVQIACAKAYSDFVTKKRDSVCV 329
Cdd:PRK10365 309 VPSLRQR--REDIPLLaGHFLQRFAERNRKAVKgFTPQAMDLLIHYDWPGNIRELENAVERAVVLLTGEYISERELPLAI 386
|
....*.
gi 487961443 330 SSTDLP 335
Cdd:PRK10365 387 ASTPIP 392
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
106-248 |
6.93e-13 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 67.01 E-value: 6.93e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487961443 106 HTLLLGETGVGKSMFASLMHEYAieveqLPKDAPFIVFNCADY-ANNPQLLLGQLFGIKKGAYTGASDQKGLIEKAHE-- 182
Cdd:smart00382 4 VILIVGPPGSGKTTLARALAREL-----GPPGGGVIYIDGEDIlEEVLDQLLLIIVGGKKASGSGELRLRLALALARKlk 78
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 487961443 183 -GILFLDEVHRLPPEGQEMLFTFIDRgvYRRLGETENERKARVLIITATTEEPNSFLLK-TFTRRIPM 248
Cdd:smart00382 79 pDVLILDEITSLLDAEQEALLLLLEE--LRLLLLLKSEKNLTVILTTNDEKDLGPALLRrRFDRRIVL 144
|
|
| PRD |
pfam00874 |
PRD domain; The PRD domain (for PTS Regulation Domain), is the phosphorylatable regulatory ... |
801-885 |
3.16e-11 |
|
PRD domain; The PRD domain (for PTS Regulation Domain), is the phosphorylatable regulatory domain found in bacterial transcriptional antiterminator such as BglG, SacY and LicT, as well as in activators such as MtlR and LevR. The PRD is phosphorylated on one or two conserved histidine residues. PRD-containing proteins are involved in the regulation of catabolic operons in Gram+ and Gram- bacteria and are often characterized by a short N-terminal effector domain that binds to either RNA (CAT-RBD for antiterminators pfam03123) or DNA (for activators), and a duplicated PRD module which is phosphorylated by the sugar phosphotransferase system (PTS) in response to the availability of carbon source. The phosphorylations modify the conformation and stability of the dimeric proteins and thereby the RNA- or DNA-binding activity of the effector domain. The structure of the LicT PRD domains has been solved in both the active (pdb:1h99) and inactive state (pdb:1tlv), revealing massive structural rearrangements upon activation.
Pssm-ID: 459973 [Multi-domain] Cd Length: 90 Bit Score: 60.34 E-value: 3.16e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487961443 801 LNTIQELISLQLTPDSL-MGVILHMSCMVDRLQKGESLlPHPDKEKRRQDEYWMYMKVKKALQPIENTFEIQIPDDEVFY 879
Cdd:pfam00874 4 IELIEKKLGITFDDDILyIRLILHLAFAIERIKEGITI-ENPLLEEIKEKYPKEFEIAKKILEILEEELGIELPEDEIGY 82
|
....*.
gi 487961443 880 IMDFFI 885
Cdd:pfam00874 83 IALHFL 88
|
|
| BglG |
COG3711 |
Transcriptional antiterminator [Transcription]; |
794-880 |
1.47e-05 |
|
Transcriptional antiterminator [Transcription];
Pssm-ID: 442925 [Multi-domain] Cd Length: 618 Bit Score: 48.70 E-value: 1.47e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487961443 794 IKTIRYALNTIQELISLQLTPDSLMGVILHMSCMVDRLQKGESLLPHPD--KEKRRQDEYWMymkVKKALQPIENTFEIQ 871
Cdd:COG3711 179 LELIEEIIEEAEKKLGIKLSDSIYINLTDHIAIAIKRIKKGKYIKLDNPllWEIKKPKEYEI---AKEILKLIEERLGIS 255
|
....*....
gi 487961443 872 IPDDEVFYI 880
Cdd:COG3711 256 LPEDEIGYI 264
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PspF |
COG1221 |
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain ... |
1-799 |
0e+00 |
|
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription, Signal transduction mechanisms];
Pssm-ID: 440834 [Multi-domain] Cd Length: 835 Bit Score: 761.18 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487961443 1 MKRIDLIFNAIQK-------GNYTEGITASELATLLQLDRANVSSDLNKLVKDNRLLKTSTRPVRF-------------- 59
Cdd:COG1221 1 MKRKEKILNYLKEltknlslEKKSEGFTAEEIAEKLGISRNNVSHELNELVKEGKLIKINGRPVLFldkeafeeqfgtkl 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487961443 60 ---YIETNTSLETHSTKG--TSLDTFAIENTSLKIAIEKAKASILYPPNGMHTLLLGETGVGKSMFASLMHEYAIEVEQL 134
Cdd:COG1221 81 kseYSFVELLAEKENNEEeeDPFDNLIGANGSLKNAIEQAKAAILYPPKGLHTLILGPTGVGKSFFAELMYEYAIEIGVL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487961443 135 PKDAPFIVFNCADYANNPQLLLGQLFGIKKGAYTGA-SDQKGLIEKAHEGILFLDEVHRLPPEGQEMLFTFIDRGVYRRL 213
Cdd:COG1221 161 PEDAPFVVFNCADYANNPQLLMSQLFGYVKGAFTGAdKDKEGLIEKADGGILFLDEVHRLPPEGQEMLFTFMDKGIYRRL 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487961443 214 GETENERKARVLIITATTEEPNSFLLKTFTRRIPMTVTLPPLRERTHKERFALLQLFFTNEAIRLRKEIHVSPNTMRAFV 293
Cdd:COG1221 241 GETEKTRKANVRIIFATTEDPESSLLKTFLRRIPMVIKLPSLEERSLEERLELIKHFFKEEAKRLNKPIKVSKEVLKALL 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487961443 294 FYNCPNNIGQLKTDVQIACAKAYSDFVTKKRDSVCVSSTDLPWYMKEGLFIERKSRH----LYQIPNETFVFTGDEGWSK 369
Cdd:COG1221 321 LYDCPGNIGQLKSDIQLACAKAFLNYITNKKEEIEITLSDLPENVKKGLLKLKENREeldkLSEYLEEYLIISPDTEKKL 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487961443 370 HTIKPEGSRS-SIYDYIDYKYEELQARGIEEEELELLIENDIQSFFVQYFNQISKKTSHENVFKIVDRNIVSVCEKIAEL 448
Cdd:COG1221 401 ISEEDEYELPyNFYEIIEDKYEELKSEGLSEEEINKIISKDIESYFKKLIFKLDKSNISEELLLIVVDEVIVNVVEIFEE 480
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487961443 449 AEKYLSKTFDEKVFLALSLHVQTTLQRLQGGKQIHHPQLNQIRTKYKEAFSVAMQCIQLLEEELQITIPIDEAGFLTMFF 528
Cdd:COG1221 481 AEKKLLRYNSSNLFIALSLHLLSTLLRIKKGKKIINPQLNEIKKKYYEEFILAAEAIKIIEEELKILIPDEEEGFILLLL 560
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487961443 529 VVDPIPASQTEVK--VLILAHGNGIATEMANVANELLGIDEVTGI-DMPLHESPKDFLERVKVYMKTLQNVNGLLLLVDM 605
Cdd:COG1221 561 IELKEEKSLSENVivVVVIAHGGAAASSSMAVVNLLLLEVAVAAIdDPPLEVVDVLIEEKTIVVIINKGKGGLLLLLDDG 640
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487961443 606 GSLAYIGDILETEFKIPVRVLSMTSTPHALEAARKAqlgYSLDALYETVKNLTPFYLNVQEEKKKPLSPMKSVILTACLT 685
Cdd:COG1221 641 GSLFGIIIIEEEGIIIVTVVIVSTTTVLEAAARKKL---LELDLDEIIVLEELLKNPLESKKIKISTSKKKKIIVTTIAI 717
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487961443 686 GEGSALAIQKMLENYLRFDKDLIEIIPISIVHEKDLTKMIENIKKERNIICIVTNFDMQIPCLTYHFQDIVNYTAIQPIQ 765
Cdd:COG1221 718 TTGEAGGILILILIIELLDKDLILIIIEILLIIIKEEILEKIIEEKKEVIIIVIISIIPLIIPPIILLLALKLIILIEIL 797
|
810 820 830
....*....|....*....|....*....|....
gi 487961443 766 ELITYEETYAKMADILEQQMQRNDGALLIKTIRY 799
Cdd:COG1221 798 VLLEILIDKEKIENIIKELLSLLNIIIVLLIIDI 831
|
|
| LevR |
COG3933 |
Transcriptional regulatory protein LevR, contains PRD, AAA+ and EIIA domains [Transcription]; |
1-885 |
0e+00 |
|
Transcriptional regulatory protein LevR, contains PRD, AAA+ and EIIA domains [Transcription];
Pssm-ID: 443134 [Multi-domain] Cd Length: 916 Bit Score: 668.36 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487961443 1 MKRIDLIFNAIQKGNYTEGITASELATLLQLDRANVSSDLNKLVKDNRLLKTSTRPVRFYIETNTSLETHSTKGTSLDTF 80
Cdd:COG3933 21 ARDLKELIKSKLLKESTGLLKLLALLLLLKRLSELLLELKKLKKEKKTLKKERSLLEKKKNKLNLKEEKKEKLDFKALIG 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487961443 81 AIEntSLKIAIEKAKASILYPPNGMHTLLLGETGVGKSMFASLMHEYAIEVEQLPKDAPFIVFNCADYANNPQLLLGQLF 160
Cdd:COG3933 101 LSL--SLLSAAAAAKAAKPPPPLGLLTLLLGGTGGGKSAFAGYMYAFAAKIAELAAPFVFFNFANAAYNPNLLLLLLFGL 178
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487961443 161 GIKKGAYTGAsDQKGLIEKAHEGILFLDEVHRLPPEGQEMLFTFIDRGVYRRLGETENERKARVLIITATTEEPNSFLLK 240
Cdd:COG3933 179 GGGAGGGAGA-DGGGLGGAAGAGGGLLDLLDELPLEGEEQEELFFLLGKGLFRGEGGESRSRRVRIIRATTETEESLLLT 257
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487961443 241 TFTRRIPMTVTLPPLRERTHKERFALLQLFFTNEAIRLRKEIHVSPNTMRAFVFYNCPNNIGQLKTDVQIACAKAYSDF- 319
Cdd:COG3933 258 TLTRRIRIIIILPRLPILERRERERLLLLLFEFEEEEIRIIKILIVLLLALLLLLLYVNNLGQLGLLKLLIKAAAAAALa 337
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487961443 320 --VTKKRDSVCVSSTDLPWYMKEGLFIERKSRHLYQIPNETFVFTGDEGWSKHTIKPEgSRSSIYDYIDYKYEELQARGI 397
Cdd:COG3933 338 kaIKEATIILRLLSKLLKLLLLLLLNERLLLLELKILIEPLDIFFDSSASSDESDESE-EDENLYEIIEIKKKLLLELGI 416
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487961443 398 EEEELELLIENDIQSFFVQYFNQISKKTSHENVFKIVDRNIVSVCEKIAELAEKYLSKTFDEKVFLALSLHVQTTLQRLQ 477
Cdd:COG3933 417 DEEEINIIIEIDIDVHLLKFIYDDNKNFNKEELAKIVDEDIINVVEEILELAEKKLGRKFSENFIYALSLHLSSFIERIK 496
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487961443 478 GGKQIHHPQLNQIRTKYKEAFSVAMQCIQLLEEELQITIPIDEAGFLTMFFVVDPIPASQTEVKVLILAHGNGIATEMAN 557
Cdd:COG3933 497 EGKEIINPNLNEIKKKYPKEFKVAKEIKELIEQELDIEIPEDEVGFLTLFLVSLNENNESGKVGVIVLAHGYSTASSMAE 576
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487961443 558 VANELLGIDEVTGIDMPLHESPKDFLERVKVYMKTLQNVNGLLLLVDMGSLAYIGDILETEFKIPVRVLSMTSTPHALEA 637
Cdd:COG3933 577 VANRLLGTNIFEAIDMPLDMSPEDILEKLKEYVKKIDTGKGVLLLVDMGSLTTFGEIIEEETGIPVKTIDMVSTPLVLEA 656
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487961443 638 ARKAQLGYSLDALYETVKNLTPFylNVQEEKKKPLSPMKSVILTACLTGEGSALAIQKMLENYLRFDKDLIEIIPISIVH 717
Cdd:COG3933 657 GRKALLGMSLEEIYESLKNFNPY--EKIISKNKPEKNKKKAIITTCFTGEGTAVKIKDLLEKSLPEDEDNIEIIPLDYLE 734
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487961443 718 EKDLTKMIENIKKERNIICIVTNFDMQIPCLTY-HFQDIVNYTAIQPIQELITYEET------------YAKMADILEQQ 784
Cdd:COG3933 735 LEEFKEKIDEIFKEYEILAIVGTIDPEIPDIPFiSLEDLISGEGIEKLQKLLGGELDaeeieeinneiiKNFSLESLIES 814
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487961443 785 MQRNDGALLIKTIRYALNTIQELISLQLTPDSLMGVILHMSCMVDRLQKGESLLPHPDKEKRRQDEYWMYMKVKKALQPI 864
Cdd:COG3933 815 LTILNPEKIINELEDFISRLENLLGIKLDNDVKIGLILHIACMIERLVTGEEILTYPNKEEFIQENESEYAVIKEAFSPI 894
|
890 900
....*....|....*....|.
gi 487961443 865 ENTFEIQIPDDEVFYIMDFFI 885
Cdd:COG3933 895 EEKYNIKIPDSEIAYIYDILK 915
|
|
| Sigma54_activat |
pfam00158 |
Sigma-54 interaction domain; |
83-245 |
5.94e-55 |
|
Sigma-54 interaction domain;
Pssm-ID: 425491 [Multi-domain] Cd Length: 168 Bit Score: 187.61 E-value: 5.94e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487961443 83 ENTSLKIAIEKAKASILYPpngMHTLLLGETGVGKSMFASLMHEYAieveqLPKDAPFIVFNCADYanNPQLLLGQLFGI 162
Cdd:pfam00158 4 ESPAMQEVLEQAKRVAPTD---APVLITGESGTGKELFARAIHQLS-----PRADGPFVAVNCAAI--PEELLESELFGH 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487961443 163 KKGAYTGA-SDQKGLIEKAHEGILFLDEVHRLPPEGQEMLFTFIDRGVYRRLGETEnERKARVLIITATTEEPNSFLLKT 241
Cdd:pfam00158 74 EKGAFTGAdSDRKGLFELADGGTLFLDEIGELPLELQAKLLRVLQEGEFERVGGTK-PIKVDVRIIAATNRDLEEAVAEG 152
|
....
gi 487961443 242 FTRR 245
Cdd:pfam00158 153 RFRE 156
|
|
| AtoC |
COG2204 |
DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, ... |
108-346 |
5.28e-36 |
|
DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, and a Fis-type DNA-binding domains [Signal transduction mechanisms];
Pssm-ID: 441806 [Multi-domain] Cd Length: 418 Bit Score: 141.64 E-value: 5.28e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487961443 108 LLLGETGVGKSMFASLMHEYAieveqLPKDAPFIVFNCAdyANNPQLLLGQLFGIKKGAYTGA-SDQKGLIEKAHEGILF 186
Cdd:COG2204 158 LITGESGTGKELVARAIHRLS-----PRADGPFVAVNCA--AIPEELLESELFGHEKGAFTGAvARRIGKFELADGGTLF 230
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487961443 187 LDEVHRLPPEGQEMLFTFIDRGVYRRLGETEnERKARVLIITATTE------EPNSFLLKTFTRRIPMTVTLPPLRERth 260
Cdd:COG2204 231 LDEIGEMPLALQAKLLRVLQEREFERVGGNK-PIPVDVRVIAATNRdleelvEEGRFREDLYYRLNVFPIELPPLRER-- 307
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487961443 261 KERFALLQLFFTNE-AIRLRKEIHVSPNTMRAFVFYNCPNNIGQLKTDVQIACAKAYSDFVTKKrdsvcvsstDLPWYMK 339
Cdd:COG2204 308 REDIPLLARHFLARfAAELGKPVKLSPEALEALLAYDWPGNVRELENVIERAVILADGEVITAE---------DLPEALE 378
|
....*..
gi 487961443 340 EglfIER 346
Cdd:COG2204 379 E---VER 382
|
|
| AcoR |
COG3284 |
Transcriptional regulator DhaR of acetoin/glycerol metabolism [Transcription]; |
108-335 |
1.46e-34 |
|
Transcriptional regulator DhaR of acetoin/glycerol metabolism [Transcription];
Pssm-ID: 442514 [Multi-domain] Cd Length: 625 Bit Score: 140.81 E-value: 1.46e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487961443 108 LLLGETGVGKSMFASLMHEYAIeveqlPKDAPFIVFNCAdyANNPQLLLGQLFGIKKGAYTGASDQ--KGLIEKAHEGIL 185
Cdd:COG3284 348 LILGETGTGKELFARAIHAASP-----RADGPFVAVNCA--AIPEELIESELFGYEPGAFTGARRKgrPGKIEQADGGTL 420
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487961443 186 FLDEVHRLPPEGQEMLFTFIDRGVYRRLGETEnERKARVLIITATteepNSFLLK-----TFTR----RI-PMTVTLPPL 255
Cdd:COG3284 421 FLDEIGDMPLALQARLLRVLQEREVTPLGGTK-PIPVDVRLIAAT----HRDLRElvaagRFREdlyyRLnGLTLTLPPL 495
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487961443 256 RERTHKErfALLQLFFTNEAIRlRKEIHVSPNTMRAFVFYNCPNNIGQLKTDVQIACAKAysdfvtkkrDSVCVSSTDLP 335
Cdd:COG3284 496 REREDLP--ALIEHLLRELAAG-RGPLRLSPEALALLAAYPWPGNVRELRNVLRTALALA---------DGGVITVEDLP 563
|
|
| PTS_IIA_man |
cd00006 |
PTS_IIA, PTS system, mannose/sorbose specific IIA subunit. The bacterial phosphoenolpyruvate: ... |
540-660 |
1.84e-30 |
|
PTS_IIA, PTS system, mannose/sorbose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. IIA subunits receive phosphoryl groups from HPr and transfer them to IIB subunits, which in turn phosphorylate the substrate.
Pssm-ID: 237978 [Multi-domain] Cd Length: 122 Bit Score: 116.17 E-value: 1.84e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487961443 540 VKVLILAHGNgIATEMANVANELLGIDE-VTGIDMPLHESPKDFLERVKVYMKTLQNVNGLLLLVDM--GSLAYIGDILE 616
Cdd:cd00006 1 VGIIIATHGG-FASGLLNSAEMILGEQEnVEAIDFPPGESPDDLLEKIKAALAELDSGEGVLILTDLfgGSPNNAAARLS 79
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 487961443 617 TEfKIPVRVLSMTSTPHALEAARKAQLGYSLDALYETVKNLTPF 660
Cdd:cd00006 80 ME-HPPVEVIAGVNLPMLLEAARARELGLSLDELVENALEAGRE 122
|
|
| RocR |
COG3829 |
RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis ... |
67-305 |
1.27e-29 |
|
RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis domains [Transcription, Signal transduction mechanisms];
Pssm-ID: 443041 [Multi-domain] Cd Length: 448 Bit Score: 122.96 E-value: 1.27e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487961443 67 LETHSTKGTSLDTFAIENTSLKIAIEKAK------ASILyppngmhtlLLGETGVGKSMFASLMHEyaievEQLPKDAPF 140
Cdd:COG3829 127 LERGLSAKYTFDDIIGKSPAMKELLELAKrvaksdSTVL---------ILGESGTGKELFARAIHN-----ASPRRDGPF 192
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487961443 141 IVFNCAdyANNPQLLLGQLFGIKKGAYTGAS--DQKGLIEKAHEGILFLDEVHRLPPEGQEMLFTFIDRGVYRRLGETEn 218
Cdd:COG3829 193 VAVNCA--AIPENLLESELFGYEKGAFTGAKkgGKPGLFELADGGTLFLDEIGEMPLSLQAKLLRVLQEKEVRRVGGTK- 269
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487961443 219 ERKARVLIITAT-------TEEpnsfllKTFtRR--------IPmtVTLPPLRERthKERFALLQLFFTNE-AIRLRKEI 282
Cdd:COG3829 270 PIPVDVRIIAATnrdleemVEE------GRF-REdlyyrlnvIP--IHIPPLRER--KEDIPLLAEHFLEKfNKKYGKNI 338
|
250 260
....*....|....*....|....
gi 487961443 283 H-VSPNTMRAFVFYNCPNNIGQLK 305
Cdd:COG3829 339 KgISPEALELLLAYDWPGNVRELE 362
|
|
| PEP_resp_reg |
TIGR02915 |
PEP-CTERM-box response regulator transcription factor; Members of this protein family share ... |
108-321 |
8.43e-26 |
|
PEP-CTERM-box response regulator transcription factor; Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC (see SP|Q06065). These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158). [Regulatory functions, DNA interactions]
Pssm-ID: 274348 [Multi-domain] Cd Length: 445 Bit Score: 111.76 E-value: 8.43e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487961443 108 LLLGETGVGKSMFASLMHEYAieveqLPKDAPFIVFNCADYANNpqLLLGQLFGIKKGAYTGASDQ-KGLIEKAHEGILF 186
Cdd:TIGR02915 166 LLLGESGTGKEVLARALHQLS-----DRKDKRFVAINCAAIPEN--LLESELFGYEKGAFTGAVKQtLGKIEYAHGGTLF 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487961443 187 LDEVHRLPPEGQEMLFTFIDRGVYRRLGETEnERKARVLIITATTE------EPNSFLLKTFTRRIPMTVTLPPLRERTh 260
Cdd:TIGR02915 239 LDEIGDLPLNLQAKLLRFLQERVIERLGGRE-EIPVDVRIVCATNQdlkrmiAEGTFREDLFYRIAEISITIPPLRSRD- 316
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 487961443 261 kERFALLQLFFTNE-AIRLRKEIH-VSPNTMRAFVFYNCPNNIGQLKTDVQIACAKAYSDFVT 321
Cdd:TIGR02915 317 -GDAVLLANAFLERfARELKRKTKgFTDDALRALEAHAWPGNVRELENKVKRAVIMAEGNQIT 378
|
|
| TyrR |
COG3283 |
Transcriptional regulator TyrR of aromatic amino acids metabolism [Transcription, Amino acid ... |
108-305 |
3.67e-21 |
|
Transcriptional regulator TyrR of aromatic amino acids metabolism [Transcription, Amino acid transport and metabolism];
Pssm-ID: 442513 [Multi-domain] Cd Length: 514 Bit Score: 98.34 E-value: 3.67e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487961443 108 LLLGETGVGKSMFASLMHEYAIEveqlpKDAPFIVFNCA----DYANNpqlllgQLFGIKKGAYTGASD-QKGLIEKAHE 182
Cdd:COG3283 231 LIQGETGTGKELLARACHLASPR-----GDKPFLALNCAalpdDVAES------ELFGYAPGAFGNAREgKKGLFEQANG 299
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487961443 183 GILFLDEVHRLPPEGQEMLFTFIDRGVYRRLGEtENERKARVLIITATTEEpnsfLLKT----------FTRRIPMTVTL 252
Cdd:COG3283 300 GTVFLDEIGEMSPQLQAKLLRFLQDGTFRRVGE-EQEVKVDVRVICATQKD----LAELvqegefredlYYRLNVLTLTL 374
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 487961443 253 PPLRERthKERFALL-QLFFTNEAIRL-RKEIHVSPNTMRAFVFYNCPNNIGQLK 305
Cdd:COG3283 375 PPLRER--KSDILPLaEHFVARFSQQLgRPRPRLSPDLVDFLQSYPWPGNVRQLE 427
|
|
| PRK10365 |
PRK10365 |
sigma-54-dependent response regulator transcription factor ZraR; |
99-335 |
5.80e-21 |
|
sigma-54-dependent response regulator transcription factor ZraR;
Pssm-ID: 182412 [Multi-domain] Cd Length: 441 Bit Score: 97.02 E-value: 5.80e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487961443 99 LYPPNGMHTLLLGETGVGKSMFASLMHEYAIEveqlpKDAPFIVFNCAdyANNPQLLLGQLFGIKKGAYTGASDQK-GLI 177
Cdd:PRK10365 157 LVAPSEATVLIHGDSGTGKELVARAIHASSAR-----SEKPLVTLNCA--ALNESLLESELFGHEKGAFTGADKRReGRF 229
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487961443 178 EKAHEGILFLDEVHRLPPEGQEMLFTFIDRGVYRRLGETENeRKARVLIITAT----TEEPNS--FLLKTFTRRIPMTVT 251
Cdd:PRK10365 230 VEADGGTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQT-ISVDVRLIAAThrdlAAEVNAgrFRQDLYYRLNVVAIE 308
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487961443 252 LPPLRERthKERFALL-QLFFTNEAIRLRKEIH-VSPNTMRAFVFYNCPNNIGQLKTDVQIACAKAYSDFVTKKRDSVCV 329
Cdd:PRK10365 309 VPSLRQR--REDIPLLaGHFLQRFAERNRKAVKgFTPQAMDLLIHYDWPGNIRELENAVERAVVLLTGEYISERELPLAI 386
|
....*.
gi 487961443 330 SSTDLP 335
Cdd:PRK10365 387 ASTPIP 392
|
|
| PRK10820 |
PRK10820 |
transcriptional regulator TyrR; |
108-305 |
6.33e-20 |
|
transcriptional regulator TyrR;
Pssm-ID: 236769 [Multi-domain] Cd Length: 520 Bit Score: 94.37 E-value: 6.33e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487961443 108 LLLGETGVGKSMFASLMHEYAIEVEQlpkdaPFIVFNCADYANNpqLLLGQLFGIKKGAYTGASD-QKGLIEKAHEGILF 186
Cdd:PRK10820 231 LITGDTGTGKDLLAYACHLRSPRGKK-----PFLALNCASIPDD--VVESELFGHAPGAYPNALEgKKGFFEQANGGSVL 303
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487961443 187 LDEVHRLPPEGQEMLFTFIDRGVYRRLGEtENERKARVLIITATTE------EPNSFLLKTFTRRIPMTVTLPPLRERTh 260
Cdd:PRK10820 304 LDEIGEMSPRMQAKLLRFLNDGTFRRVGE-DHEVHVDVRVICATQKnlvelvQKGEFREDLYYRLNVLTLNLPPLRDRP- 381
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 487961443 261 KERFALLQLF---FTNEAIRLRKEIhvSPNtMRAFVF-YNCPNNIGQLK 305
Cdd:PRK10820 382 QDIMPLTELFvarFADEQGVPRPKL--AAD-LNTVLTrYGWPGNVRQLK 427
|
|
| PRK11361 |
PRK11361 |
acetoacetate metabolism transcriptional regulator AtoC; |
82-311 |
1.58e-19 |
|
acetoacetate metabolism transcriptional regulator AtoC;
Pssm-ID: 183099 [Multi-domain] Cd Length: 457 Bit Score: 92.60 E-value: 1.58e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487961443 82 IENTSLKIAIEKAKasilyppngmhTLLLGETGVGKSMFASlmheyAIEVEQLPKDAPFIVFNCAdyANNPQLLLGQLFG 161
Cdd:PRK11361 155 ICKDTAKIALSQAS-----------VLISGESGTGKELIAR-----AIHYNSRRAKGPFIKVNCA--ALPESLLESELFG 216
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487961443 162 IKKGAYTGASDQK-GLIEKAHEGILFLDEVHRLPPEGQEMLFTFIDRGVYRRLGETENERkARVLIITATTEE------P 234
Cdd:PRK11361 217 HEKGAFTGAQTLRqGLFERANEGTLLLDEIGEMPLVLQAKLLRILQEREFERIGGHQTIK-VDIRIIAATNRDlqamvkE 295
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 487961443 235 NSFLLKTFTRRIPMTVTLPPLRERthKERFALLQLFFTNE--AIRLRKEIHVSPNTMRAFVFYNCPNNIGQLKTDVQIA 311
Cdd:PRK11361 296 GTFREDLFYRLNVIHLILPPLRDR--REDISLLANHFLQKfsSENQRDIIDIDPMAMSLLTAWSWPGNIRELSNVIERA 372
|
|
| pspF |
PRK11608 |
phage shock protein operon transcriptional activator; Provisional |
108-309 |
4.02e-18 |
|
phage shock protein operon transcriptional activator; Provisional
Pssm-ID: 236936 [Multi-domain] Cd Length: 326 Bit Score: 86.65 E-value: 4.02e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487961443 108 LLLGETGVGKSMFASLMHeYAIEVEQlpkdAPFIVFNCAdyANNPQLLLGQLFGIKKGAYTGAsdQK---GLIEKAHEGI 184
Cdd:PRK11608 33 LIIGERGTGKELIASRLH-YLSSRWQ----GPFISLNCA--ALNENLLDSELFGHEAGAFTGA--QKrhpGRFERADGGT 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487961443 185 LFLDEVHRLPPEGQEMLFTFIDRGVYRRLGETEnERKARVLIITATTE------EPNSFLLKTFTRRIPMTVTLPPLRER 258
Cdd:PRK11608 104 LFLDELATAPMLVQEKLLRVIEYGELERVGGSQ-PLQVNVRLVCATNAdlpamvAEGKFRADLLDRLAFDVVQLPPLRER 182
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 487961443 259 thKERFALLQLFFtneAIRLRKEIHV------SPNTMRAFVFYNCPNNIGQLKTDVQ 309
Cdd:PRK11608 183 --QSDIMLMAEHF---AIQMCRELGLplfpgfTERARETLLNYRWPGNIRELKNVVE 234
|
|
| PRD |
pfam00874 |
PRD domain; The PRD domain (for PTS Regulation Domain), is the phosphorylatable regulatory ... |
443-529 |
7.12e-18 |
|
PRD domain; The PRD domain (for PTS Regulation Domain), is the phosphorylatable regulatory domain found in bacterial transcriptional antiterminator such as BglG, SacY and LicT, as well as in activators such as MtlR and LevR. The PRD is phosphorylated on one or two conserved histidine residues. PRD-containing proteins are involved in the regulation of catabolic operons in Gram+ and Gram- bacteria and are often characterized by a short N-terminal effector domain that binds to either RNA (CAT-RBD for antiterminators pfam03123) or DNA (for activators), and a duplicated PRD module which is phosphorylated by the sugar phosphotransferase system (PTS) in response to the availability of carbon source. The phosphorylations modify the conformation and stability of the dimeric proteins and thereby the RNA- or DNA-binding activity of the effector domain. The structure of the LicT PRD domains has been solved in both the active (pdb:1h99) and inactive state (pdb:1tlv), revealing massive structural rearrangements upon activation.
Pssm-ID: 459973 [Multi-domain] Cd Length: 90 Bit Score: 79.22 E-value: 7.12e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487961443 443 EKIAELAEKYLSKTF-DEKVFLALSLHVQTTLQRLQGGKQIHHPQLNQIRTKYKEAFSVAMQCIQLLEEELQITIPIDEA 521
Cdd:pfam00874 1 EEIIELIEKKLGITFdDDILYIRLILHLAFAIERIKEGITIENPLLEEIKEKYPKEFEIAKKILEILEEELGIELPEDEI 80
|
....*...
gi 487961443 522 GFLTMFFV 529
Cdd:pfam00874 81 GYIALHFL 88
|
|
| PRK15424 |
PRK15424 |
propionate catabolism operon regulatory protein PrpR; Provisional |
90-305 |
8.26e-18 |
|
propionate catabolism operon regulatory protein PrpR; Provisional
Pssm-ID: 237963 [Multi-domain] Cd Length: 538 Bit Score: 87.85 E-value: 8.26e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487961443 90 AIEKAKASI-LYPPNGMHTLLLGETGVGKSMFASLMH-EYAIEVEQLP--KDAPFIVFNCAdyANNPQLLLGQLFGIKKG 165
Cdd:PRK15424 227 QMEQVRQTIlLYARSSAAVLIQGETGTGKELAAQAIHrEYFARHDARQgkKSHPFVAVNCG--AIAESLLEAELFGYEEG 304
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487961443 166 AYTGA--SDQKGLIEKAHEGILFLDEVHRLPPEGQEMLFTFIDRGVYRRLGETEnERKARVLIITATTE------EPNSF 237
Cdd:PRK15424 305 AFTGSrrGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQ-PVPVDVRVISATHCdleedvRQGRF 383
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 487961443 238 LLKTFTRRIPMTVTLPPLRERTH----------KERFALLQLFFTnEAIRLRKEIHvspntMRAFVFYNCPNNIGQLK 305
Cdd:PRK15424 384 RRDLFYRLSILRLQLPPLRERVAdilplaesflKQSLAALSAPFS-AALRQGLQQC-----ETLLLHYDWPGNVRELR 455
|
|
| glnG |
PRK10923 |
nitrogen regulation protein NR(I); Provisional |
108-305 |
6.54e-16 |
|
nitrogen regulation protein NR(I); Provisional
Pssm-ID: 182842 [Multi-domain] Cd Length: 469 Bit Score: 81.46 E-value: 6.54e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487961443 108 LLLGETGVGKSMFASLMHEYAIEVEqlpkdAPFIVFNCAdyANNPQLLLGQLFGIKKGAYTGASD-QKGLIEKAHEGILF 186
Cdd:PRK10923 165 LINGESGTGKELVAHALHRHSPRAK-----APFIALNMA--AIPKDLIESELFGHEKGAFTGANTiRQGRFEQADGGTLF 237
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487961443 187 LDEVHRLPPEGQEMLFTFIDRGVYRRLGETEnERKARVLIITATTE------EPNSFLLKTFTRRIPMTVTLPPLRERTh 260
Cdd:PRK10923 238 LDEIGDMPLDVQTRLLRVLADGQFYRVGGYA-PVKVDVRIIAATHQnleqrvQEGKFREDLFHRLNVIRVHLPPLRERR- 315
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 487961443 261 kERFALLQLFFTNEAIR-LRKEIHV-SPNTMRAFVFYNCPNNIGQLK 305
Cdd:PRK10923 316 -EDIPRLARHFLQVAAReLGVEAKLlHPETEAALTRLAWPGNVRQLE 361
|
|
| AAA |
cd00009 |
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ... |
90-254 |
9.97e-16 |
|
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Pssm-ID: 99707 [Multi-domain] Cd Length: 151 Bit Score: 75.26 E-value: 9.97e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487961443 90 AIEKAKASILYPPNGmHTLLLGETGVGKSMFASLMHEYAIEveqlpKDAPFIVFNCADyannpqlLLGQLFGIKKGAYTG 169
Cdd:cd00009 6 AIEALREALELPPPK-NLLLYGPPGTGKTTLARAIANELFR-----PGAPFLYLNASD-------LLEGLVVAELFGHFL 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487961443 170 ASDQKGLIEKAHEGILFLDEVHRLPPEGQEMLFTFIDRGVYRRlgetenERKARVLIITATTEEPNSFLLKTFTRRIPMT 249
Cdd:cd00009 73 VRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLR------IDRENVRVIGATNRPLLGDLDRALYDRLDIR 146
|
....*
gi 487961443 250 VTLPP 254
Cdd:cd00009 147 IVIPL 151
|
|
| PRK05022 |
PRK05022 |
nitric oxide reductase transcriptional regulator NorR; |
108-304 |
1.16e-15 |
|
nitric oxide reductase transcriptional regulator NorR;
Pssm-ID: 235331 [Multi-domain] Cd Length: 509 Bit Score: 80.99 E-value: 1.16e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487961443 108 LLLGETGVGKSMFASLMHeyaievEQLP-KDAPFIVFNCAdyANNPQLLLGQLFGIKKGAYTGA-SDQKGLIEKAHEGIL 185
Cdd:PRK05022 214 LILGETGVGKELVARAIH------AASPrADKPLVYLNCA--ALPESLAESELFGHVKGAFTGAiSNRSGKFELADGGTL 285
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487961443 186 FLDEVHRLPPEGQEMLFTFIDRGVYRRLGEtENERKARVLIITATteepNSFL----------------LKTFtrriPMT 249
Cdd:PRK05022 286 FLDEIGELPLALQAKLLRVLQYGEIQRVGS-DRSLRVDVRVIAAT----NRDLreevragrfradlyhrLSVF----PLS 356
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 487961443 250 VtlPPLRERthKERFALLQLFFTnEAIRLR---KEIHVSPNTMRAFVFYNCPNNIGQL 304
Cdd:PRK05022 357 V--PPLRER--GDDVLLLAGYFL-EQNRARlglRSLRLSPAAQAALLAYDWPGNVREL 409
|
|
| PRK15115 |
PRK15115 |
response regulator GlrR; Provisional |
108-304 |
2.58e-15 |
|
response regulator GlrR; Provisional
Pssm-ID: 185070 [Multi-domain] Cd Length: 444 Bit Score: 79.50 E-value: 2.58e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487961443 108 LLLGETGVGKSMFASLMHEYAieveqlPK-DAPFIVFNCAdyANNPQLLLGQLFGIKKGAYTGA-SDQKGLIEKAHEGIL 185
Cdd:PRK15115 161 LINGQSGTGKEILAQAIHNAS------PRaSKPFIAINCG--ALPEQLLESELFGHARGAFTGAvSNREGLFQAAEGGTL 232
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487961443 186 FLDEVHRLPPEGQEMLFTFIDRGVYRRLGETeNERKARVLIITATTE------EPNSFLLKTFTRRIPMTVTLPPLRERT 259
Cdd:PRK15115 233 FLDEIGDMPAPLQVKLLRVLQERKVRPLGSN-RDIDIDVRIISATHRdlpkamARGEFREDLYYRLNVVSLKIPALAERT 311
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 487961443 260 hkERFALLqlffTNEAIRLRKEIH------VSPNTMRAFVFYNCPNNIGQL 304
Cdd:PRK15115 312 --EDIPLL----ANHLLRQAAERHkpfvraFSTDAMKRLMTASWPGNVRQL 356
|
|
| PRK11388 |
PRK11388 |
DNA-binding transcriptional regulator DhaR; Provisional |
108-305 |
3.55e-15 |
|
DNA-binding transcriptional regulator DhaR; Provisional
Pssm-ID: 183114 [Multi-domain] Cd Length: 638 Bit Score: 79.72 E-value: 3.55e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487961443 108 LLLGETGVGKSMFASLMHEyaiEVEQlpKDAPFIVFNCADYANNpqLLLGQLFGikKGAYTGASDQKGLIEKAHEGILFL 187
Cdd:PRK11388 352 LLCGEEGVGKALLAQAIHN---ESER--AAGPYIAVNCQLYPDE--ALAEEFLG--SDRTDSENGRLSKFELAHGGTLFL 422
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487961443 188 DEVHRLPPEGQEMLFTFIDRGVYRRLgeteNERK---ARVLIITATTEE-PNSFLLKTFTRRIPMT-----VTLPPLRER 258
Cdd:PRK11388 423 EKVEYLSPELQSALLQVLKTGVITRL----DSRRlipVDVRVIATTTADlAMLVEQNRFSRQLYYAlhafeITIPPLRMR 498
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 487961443 259 THKERFALLQLFFTNEAiRLRKEIHVSPNTMRAFVFYNCPNNIGQLK 305
Cdd:PRK11388 499 REDIPALVNNKLRSLEK-RFSTRLKIDDDALARLVSYRWPGNDFELR 544
|
|
| PRK15429 |
PRK15429 |
formate hydrogenlyase transcriptional activator FlhA; |
108-311 |
5.86e-15 |
|
formate hydrogenlyase transcriptional activator FlhA;
Pssm-ID: 237965 [Multi-domain] Cd Length: 686 Bit Score: 79.10 E-value: 5.86e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487961443 108 LLLGETGVGKSMFASLMHEYAIEveqlpKDAPFIVFNCAdyANNPQLLLGQLFGIKKGAYTGASDQK-GLIEKAHEGILF 186
Cdd:PRK15429 403 LILGETGTGKELIARAIHNLSGR-----NNRRMVKMNCA--AMPAGLLESDLFGHERGAFTGASAQRiGRFELADKSSLF 475
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487961443 187 LDEVHRLPPEGQEMLFTFIDRGVYRRLGeTENERKARVLIITATTEE------PNSFLLKTFTRRIPMTVTLPPLRERth 260
Cdd:PRK15429 476 LDEVGDMPLELQPKLLRVLQEQEFERLG-SNKIIQTDVRLIAATNRDlkkmvaDREFRSDLYYRLNVFPIHLPPLRER-- 552
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 487961443 261 KERFALLQLFFTNE-AIRLRKEIHVSP-NTMRAFVFYNCPNNIGQLKTDVQIA 311
Cdd:PRK15429 553 PEDIPLLVKAFTFKiARRMGRNIDSIPaETLRTLSNMEWPGNVRELENVIERA 605
|
|
| BglG |
COG3711 |
Transcriptional antiterminator [Transcription]; |
408-529 |
7.19e-14 |
|
Transcriptional antiterminator [Transcription];
Pssm-ID: 442925 [Multi-domain] Cd Length: 618 Bit Score: 75.67 E-value: 7.19e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487961443 408 NDIQSFFVQYFNQISKKTSHENVF--KIVDRNIVSVCEKIAELAEKYLSKTFDEKVFLALSLHVQTTLQRLQGGKQIHHP 485
Cdd:COG3711 146 LDIRKALAELLSELLSENDLLSLLllKLIPEEDLELIEEIIEEAEKKLGIKLSDSIYINLTDHIAIAIKRIKKGKYIKLD 225
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 487961443 486 QLNQIRTKYKEAFSVAMQCIQLLEEELQITIPIDEAGFLTMFFV 529
Cdd:COG3711 226 NPLLWEIKKPKEYEIAKEILKLIEERLGISLPEDEIGYIALHLL 269
|
|
| BglG |
COG3711 |
Transcriptional antiterminator [Transcription]; |
422-528 |
3.09e-13 |
|
Transcriptional antiterminator [Transcription];
Pssm-ID: 442925 [Multi-domain] Cd Length: 618 Bit Score: 73.36 E-value: 3.09e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487961443 422 SKKTSHENVFKIVDRNIVSVCEKIAELAEKYLSKTFDEKVFLA--LSLHVQTTLQRLQGGKQIHHPQLNQIRTKYKEAFS 499
Cdd:COG3711 271 ARLNNDNELSEIITLEITKLIKEIINIIEEELGIDLDEDSLLYerLITHLKPAINRLKYGIPIRNPLLEEIKEKYPEAFE 350
|
90 100
....*....|....*....|....*....
gi 487961443 500 VAMQCIQLLEEELQITIPIDEAGFLTMFF 528
Cdd:COG3711 351 LAKKIAKYLEKELGIEIPEDEIGYLTLHF 379
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
106-248 |
6.93e-13 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 67.01 E-value: 6.93e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487961443 106 HTLLLGETGVGKSMFASLMHEYAieveqLPKDAPFIVFNCADY-ANNPQLLLGQLFGIKKGAYTGASDQKGLIEKAHE-- 182
Cdd:smart00382 4 VILIVGPPGSGKTTLARALAREL-----GPPGGGVIYIDGEDIlEEVLDQLLLIIVGGKKASGSGELRLRLALALARKlk 78
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 487961443 183 -GILFLDEVHRLPPEGQEMLFTFIDRgvYRRLGETENERKARVLIITATTEEPNSFLLK-TFTRRIPM 248
Cdd:smart00382 79 pDVLILDEITSLLDAEQEALLLLLEE--LRLLLLLKSEKNLTVILTTNDEKDLGPALLRrRFDRRIVL 144
|
|
| PRD |
pfam00874 |
PRD domain; The PRD domain (for PTS Regulation Domain), is the phosphorylatable regulatory ... |
801-885 |
3.16e-11 |
|
PRD domain; The PRD domain (for PTS Regulation Domain), is the phosphorylatable regulatory domain found in bacterial transcriptional antiterminator such as BglG, SacY and LicT, as well as in activators such as MtlR and LevR. The PRD is phosphorylated on one or two conserved histidine residues. PRD-containing proteins are involved in the regulation of catabolic operons in Gram+ and Gram- bacteria and are often characterized by a short N-terminal effector domain that binds to either RNA (CAT-RBD for antiterminators pfam03123) or DNA (for activators), and a duplicated PRD module which is phosphorylated by the sugar phosphotransferase system (PTS) in response to the availability of carbon source. The phosphorylations modify the conformation and stability of the dimeric proteins and thereby the RNA- or DNA-binding activity of the effector domain. The structure of the LicT PRD domains has been solved in both the active (pdb:1h99) and inactive state (pdb:1tlv), revealing massive structural rearrangements upon activation.
Pssm-ID: 459973 [Multi-domain] Cd Length: 90 Bit Score: 60.34 E-value: 3.16e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487961443 801 LNTIQELISLQLTPDSL-MGVILHMSCMVDRLQKGESLlPHPDKEKRRQDEYWMYMKVKKALQPIENTFEIQIPDDEVFY 879
Cdd:pfam00874 4 IELIEKKLGITFDDDILyIRLILHLAFAIERIKEGITI-ENPLLEEIKEKYPKEFEIAKKILEILEEELGIELPEDEIGY 82
|
....*.
gi 487961443 880 IMDFFI 885
Cdd:pfam00874 83 IALHFL 88
|
|
| FhlA |
COG3604 |
FhlA-type transcriptional regulator, contains GAF, AAA-type ATPase, and DNA-binding Fis ... |
109-305 |
1.45e-09 |
|
FhlA-type transcriptional regulator, contains GAF, AAA-type ATPase, and DNA-binding Fis domains [Transcription, Signal transduction mechanisms];
Pssm-ID: 442823 [Multi-domain] Cd Length: 338 Bit Score: 60.63 E-value: 1.45e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487961443 109 LLGETGVGKSMFASLMHEYAIEveqlpKDAPFIVFNCADYannPQLLLGQLfgikkgaytgasdqkgliekahegilfld 188
Cdd:COG3604 120 ILGETGTGKELVANAIHELSPR-----ADKPFVKVNCAAL---PESLLESL----------------------------- 162
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487961443 189 evhrlppegQEmlftfidrGVYRRLGETEnERKARVLIITATTE------EPNSFLLKTFTRRIPMTVTLPPLRERthKE 262
Cdd:COG3604 163 ---------QE--------GEFERVGGDE-TIKVDVRIIAATNRdleeevAEGRFREDLYYRLNVFPIRLPPLRER--RE 222
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 487961443 263 RFALLQLFFTNE-AIRLRKEI-HVSPNTMRAFVFYNCPNNIGQLK 305
Cdd:COG3604 223 DIPLLAEHFLEKfSRRLGKPIlRLSPEALEALMAYPWPGNVRELE 267
|
|
| LevR |
COG3933 |
Transcriptional regulatory protein LevR, contains PRD, AAA+ and EIIA domains [Transcription]; |
690-892 |
1.13e-08 |
|
Transcriptional regulatory protein LevR, contains PRD, AAA+ and EIIA domains [Transcription];
Pssm-ID: 443134 [Multi-domain] Cd Length: 916 Bit Score: 58.98 E-value: 1.13e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487961443 690 ALAIQKMLENYLRFDKDLIEIIPISIVHEKDLTKMIENIKKERNIICIVTNFDMQIP-----CLTYHFQDIVNYTA---- 760
Cdd:COG3933 333 AAALAKAIKEATIILRLLSKLLKLLLLLLLNERLLLLELKILIEPLDIFFDSSASSDesdesEEDENLYEIIEIKKklll 412
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487961443 761 -------IQPIQELITYEETYAKMADILEQQMQRND-----GALLIKTIRYALNTIQELISLQLTPDSLMGVILHMSCMV 828
Cdd:COG3933 413 elgideeEINIIIEIDIDVHLLKFIYDDNKNFNKEElakivDEDIINVVEEILELAEKKLGRKFSENFIYALSLHLSSFI 492
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 487961443 829 DRLQKGESLLPHPDKEKRRQ--DEYWMYMKVKKAlqpIENTFEIQIPDDEVFYIMDFFIKNQPVKN 892
Cdd:COG3933 493 ERIKEGKEIINPNLNEIKKKypKEFKVAKEIKEL---IEQELDIEIPEDEVGFLTLFLVSLNENNE 555
|
|
| PRK09772 |
PRK09772 |
transcriptional antiterminator BglG; Provisional |
438-540 |
4.75e-07 |
|
transcriptional antiterminator BglG; Provisional
Pssm-ID: 170086 [Multi-domain] Cd Length: 278 Bit Score: 52.40 E-value: 4.75e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487961443 438 IVSVCEKIAELAEKYLSKtFDEKVFLALSLHVQTTLQRLQGGKQIHHPQLNQIRTKYKEAFSVAMQCIQLLEEELQITIP 517
Cdd:PRK09772 72 VMATCDRIISLAQERLGK-LQDSIYISLTDHCQFAIKRFQQNVLLPNPLLWDIQRLYPKEFQLGEEALTIIDKRLGVQLP 150
|
90 100
....*....|....*....|...
gi 487961443 518 IDEAGFLTMFFVVDPIPASQTEV 540
Cdd:PRK09772 151 KDEVGFIAMHLVSAQMSGNMEDV 173
|
|
| AAA_5 |
pfam07728 |
AAA domain (dynein-related subfamily); This Pfam entry includes some of the AAA proteins not ... |
106-245 |
4.16e-06 |
|
AAA domain (dynein-related subfamily); This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Pssm-ID: 400191 [Multi-domain] Cd Length: 135 Bit Score: 46.90 E-value: 4.16e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487961443 106 HTLLLGETGVGKSM----FASLMHEYAIEVEQLPKDAPfivfncADyannpqlllgQLFGIKKGAYTGASDQKG-LIEKA 180
Cdd:pfam07728 1 GVLLVGPPGTGKTElaerLAAALSNRPVFYVQLTRDTT------EE----------DLFGRRNIDPGGASWVDGpLVRAA 64
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 487961443 181 HEG-ILFLDEVHRLPPEGQEMLFTFIDRGVYRR--LGETENERKARVLIItATTEEPN---SFLLKTFTRR 245
Cdd:pfam07728 65 REGeIAVLDEINRANPDVLNSLLSLLDERRLLLpdGGELVKAAPDGFRLI-ATMNPLDrglNELSPALRSR 134
|
|
| BglG |
COG3711 |
Transcriptional antiterminator [Transcription]; |
794-880 |
1.47e-05 |
|
Transcriptional antiterminator [Transcription];
Pssm-ID: 442925 [Multi-domain] Cd Length: 618 Bit Score: 48.70 E-value: 1.47e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487961443 794 IKTIRYALNTIQELISLQLTPDSLMGVILHMSCMVDRLQKGESLLPHPD--KEKRRQDEYWMymkVKKALQPIENTFEIQ 871
Cdd:COG3711 179 LELIEEIIEEAEKKLGIKLSDSIYINLTDHIAIAIKRIKKGKYIKLDNPllWEIKKPKEYEI---AKEILKLIEERLGIS 255
|
....*....
gi 487961443 872 IPDDEVFYI 880
Cdd:COG3711 256 LPEDEIGYI 264
|
|
| PRK13342 |
PRK13342 |
recombination factor protein RarA; Reviewed |
83-237 |
4.36e-05 |
|
recombination factor protein RarA; Reviewed
Pssm-ID: 237355 [Multi-domain] Cd Length: 413 Bit Score: 47.00 E-value: 4.36e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487961443 83 ENTSLKIAIEKAKAS--ILY-PPngmhtlllgetGVGKSMFASLMHEYAieveqlpkDAPFIVFNCAdyannpqlllgqL 159
Cdd:PRK13342 23 PGKPLRRMIEAGRLSsmILWgPP-----------GTGKTTLARIIAGAT--------DAPFEALSAV------------T 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487961443 160 FGIKkgaytgasDQKGLIEKAHEG-------ILFLDEVHRLPPEGQEMLFTFIDRGvyrrlgetenerkaRVLIITATTE 232
Cdd:PRK13342 72 SGVK--------DLREVIEEARQRrsagrrtILFIDEIHRFNKAQQDALLPHVEDG--------------TITLIGATTE 129
|
....*
gi 487961443 233 EPnSF 237
Cdd:PRK13342 130 NP-SF 133
|
|
| EIIA-man |
pfam03610 |
PTS system fructose IIA component; |
541-653 |
5.03e-05 |
|
PTS system fructose IIA component;
Pssm-ID: 427399 [Multi-domain] Cd Length: 113 Bit Score: 43.39 E-value: 5.03e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487961443 541 KVLILAHGNgIATEMANVANELLG-IDEVTGIDMPLHESPKDFLERVKVYMKTLQNVNGLLLLVDMGSLAYIGD-ILETE 618
Cdd:pfam03610 1 GIVIVSHGE-LAEGLLELAEMMAGeQENVIAVGGTPGESIGTSFEKIVEAIENLDSGDGVLVLVDLGGATPNNEaALELL 79
|
90 100 110
....*....|....*....|....*....|....*
gi 487961443 619 FKIPVRVLSMTSTPHALEAARKAQlGYSLDALYET 653
Cdd:pfam03610 80 EKERMEVITGVNLPMVEGAYAARV-SASLGELVEA 113
|
|
| SpoVK |
COG0464 |
AAA+-type ATPase, SpoVK/Ycf46/Vps4 family [Cell wall/membrane/envelope biogenesis, Cell cycle ... |
99-271 |
6.38e-05 |
|
AAA+-type ATPase, SpoVK/Ycf46/Vps4 family [Cell wall/membrane/envelope biogenesis, Cell cycle control, cell division, chromosome partitioning, Signal transduction mechanisms];
Pssm-ID: 440232 [Multi-domain] Cd Length: 397 Bit Score: 46.44 E-value: 6.38e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487961443 99 LYPPNGMhtLLLGETGVGKSMFASLMheyAIEVeqlpkDAPFIVFNCADyannpqlLLGQlfgikkgaYTGASDQK--GL 176
Cdd:COG0464 188 LPPPRGL--LLYGPPGTGKTLLARAL---AGEL-----GLPLIEVDLSD-------LVSK--------YVGETEKNlrEV 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487961443 177 IEKAHE---GILFLDEVHRLPPEGQEMLFTFIDRGVYRRLGETENERKaRVLIITATteepNSFLL--KTFTRRIPMTVT 251
Cdd:COG0464 243 FDKARGlapCVLFIDEADALAGKRGEVGDGVGRRVVNTLLTEMEELRS-DVVVIAAT----NRPDLldPALLRRFDEIIF 317
|
170 180
....*....|....*....|
gi 487961443 252 LPPLrerTHKERFALLQLFF 271
Cdd:COG0464 318 FPLP---DAEERLEIFRIHL 334
|
|
| BglG |
COG3711 |
Transcriptional antiterminator [Transcription]; |
782-880 |
2.02e-04 |
|
Transcriptional antiterminator [Transcription];
Pssm-ID: 442925 [Multi-domain] Cd Length: 618 Bit Score: 45.24 E-value: 2.02e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487961443 782 EQQMQRNDGALLIKTIRYALNTIQELISLQLTPDS--LMGVILHMSCMVDRLQKGESLlPHP--DKEKRRQDEywMYMKV 857
Cdd:COG3711 276 DNELSEIITLEITKLIKEIINIIEEELGIDLDEDSllYERLITHLKPAINRLKYGIPI-RNPllEEIKEKYPE--AFELA 352
|
90 100
....*....|....*....|...
gi 487961443 858 KKALQPIENTFEIQIPDDEVFYI 880
Cdd:COG3711 353 KKIAKYLEKELGIEIPEDEIGYL 375
|
|
| AAA |
pfam00004 |
ATPase family associated with various cellular activities (AAA); AAA family proteins often ... |
108-246 |
2.27e-04 |
|
ATPase family associated with various cellular activities (AAA); AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes.
Pssm-ID: 459627 [Multi-domain] Cd Length: 130 Bit Score: 41.81 E-value: 2.27e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487961443 108 LLLGETGVGKSMFA-SLMHEYaieveqlpkDAPFIVFNCADyannpqlLLGQLFGIkkgaytGASDQKGLIEKAHE---G 183
Cdd:pfam00004 2 LLYGPPGTGKTTLAkAVAKEL---------GAPFIEISGSE-------LVSKYVGE------SEKRLRELFEAAKKlapC 59
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 487961443 184 ILFLDEVHRLPPEGQEMLFTFIDRGV---YRRLGETENeRKARVLIITATT--EEPNSFLLKTFTRRI 246
Cdd:pfam00004 60 VIFIDEIDALAGSRGSGGDSESRRVVnqlLTELDGFTS-SNSKVIVIAATNrpDKLDPALLGRFDRII 126
|
|
| Sigma54_activ_2 |
pfam14532 |
Sigma-54 interaction domain; |
108-255 |
2.45e-04 |
|
Sigma-54 interaction domain;
Pssm-ID: 434021 [Multi-domain] Cd Length: 138 Bit Score: 41.94 E-value: 2.45e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487961443 108 LLLGETGVGKSMFASLMHEYAIeveqlPKDAPFivfNCADYANNPQLLLgqlfgikkgaytgasdqkgliEKAHEGILFL 187
Cdd:pfam14532 25 FLTGEPGSGKEFCARYLHNPST-----PWVQPF---DIEYLAHAPLELL---------------------EQAKGGTLYL 75
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 487961443 188 DEVHRLPPEGQemlftfidRGVYRRLGETENERkARVLIITATT----EEPNSFLLKTFTRRIPMTVTLPPL 255
Cdd:pfam14532 76 KDIADLSKALQ--------KGLLLLLAKAEGYR-VRLVCTSSKDlpqlAAAGLFDEQLYFELSALRLHVPPL 138
|
|
| AAA_22 |
pfam13401 |
AAA domain; |
106-196 |
1.17e-03 |
|
AAA domain;
Pssm-ID: 379165 [Multi-domain] Cd Length: 129 Bit Score: 40.02 E-value: 1.17e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487961443 106 HTLLLGETGVGKSMFASLMHeyaievEQLPKDAPFIVFNCADYANNPQLLLGQL---FGIKKGAYTGASD-----QKGLI 177
Cdd:pfam13401 7 ILVLTGESGTGKTTLLRRLL------EQLPEVRDSVVFVDLPSGTSPKDLLRALlraLGLPLSGRLSKEEllaalQQLLL 80
|
90
....*....|....*....
gi 487961443 178 EKAHEGILFLDEVHRLPPE 196
Cdd:pfam13401 81 ALAVAVVLIIDEAQHLSLE 99
|
|
| |
