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Conserved domains on  [gi|487984124|ref|WP_002056685|]
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MULTISPECIES: plasmid mobilization protein [Acinetobacter]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK13877 super family cl20126
conjugal transfer transcriptional regulator TraJ;
4-78 4.10e-16

conjugal transfer transcriptional regulator TraJ;


The actual alignment was detected with superfamily member PRK13877:

Pssm-ID: 184361 [Multi-domain]  Cd Length: 114  Bit Score: 68.51  E-value: 4.10e-16
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 487984124   4 QKKPKRIRQKVIQVVVTEAEKKQIEESAAQGNLSASQYLRDLGLGYQPKSLTDIKTIQEIRSLKSDMNKVGGLLK 78
Cdd:PRK13877   2 EKKPTRKRGRHLRVPVLPDEKAEIEANAAAAGLSVARYLRDVGQGYQIKGVIDYEYVRELARINGDLGRLGGLLK 76
 
Name Accession Description Interval E-value
PRK13877 PRK13877
conjugal transfer transcriptional regulator TraJ;
4-78 4.10e-16

conjugal transfer transcriptional regulator TraJ;


Pssm-ID: 184361 [Multi-domain]  Cd Length: 114  Bit Score: 68.51  E-value: 4.10e-16
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 487984124   4 QKKPKRIRQKVIQVVVTEAEKKQIEESAAQGNLSASQYLRDLGLGYQPKSLTDIKTIQEIRSLKSDMNKVGGLLK 78
Cdd:PRK13877   2 EKKPTRKRGRHLRVPVLPDEKAEIEANAAAAGLSVARYLRDVGQGYQIKGVIDYEYVRELARINGDLGRLGGLLK 76
MbpA NF041418
mobilization protein MbpA;
11-78 1.88e-06

mobilization protein MbpA;


Pssm-ID: 469309 [Multi-domain]  Cd Length: 93  Bit Score: 43.00  E-value: 1.88e-06
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 487984124  11 RQKVIQVVVTEAEKKQIEESAAQGNLSASQYLRDLGLGYQPK---SLTDIKTIQEIRSLKSDMNKVGGLLK 78
Cdd:NF041418   1 KTEKITFRCSILEKKLLKERAARCGLSVSEYCRALALGGRPRerlTEEQIELLRELAKYKNNLQRIGNYFG 71
 
Name Accession Description Interval E-value
PRK13877 PRK13877
conjugal transfer transcriptional regulator TraJ;
4-78 4.10e-16

conjugal transfer transcriptional regulator TraJ;


Pssm-ID: 184361 [Multi-domain]  Cd Length: 114  Bit Score: 68.51  E-value: 4.10e-16
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 487984124   4 QKKPKRIRQKVIQVVVTEAEKKQIEESAAQGNLSASQYLRDLGLGYQPKSLTDIKTIQEIRSLKSDMNKVGGLLK 78
Cdd:PRK13877   2 EKKPTRKRGRHLRVPVLPDEKAEIEANAAAAGLSVARYLRDVGQGYQIKGVIDYEYVRELARINGDLGRLGGLLK 76
MbpA NF041418
mobilization protein MbpA;
11-78 1.88e-06

mobilization protein MbpA;


Pssm-ID: 469309 [Multi-domain]  Cd Length: 93  Bit Score: 43.00  E-value: 1.88e-06
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 487984124  11 RQKVIQVVVTEAEKKQIEESAAQGNLSASQYLRDLGLGYQPK---SLTDIKTIQEIRSLKSDMNKVGGLLK 78
Cdd:NF041418   1 KTEKITFRCSILEKKLLKERAARCGLSVSEYCRALALGGRPRerlTEEQIELLRELAKYKNNLQRIGNYFG 71
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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