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Conserved domains on  [gi|488032726|ref|WP_002104123|]
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MULTISPECIES: hypothetical protein [Bacillus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
COG4637 super family cl34796
Predicted ATPase [General function prediction only];
1-36 4.84e-05

Predicted ATPase [General function prediction only];


The actual alignment was detected with superfamily member COG4637:

Pssm-ID: 443675 [Multi-domain]  Cd Length: 371  Bit Score: 39.53  E-value: 4.84e-05
                         10        20        30
                 ....*....|....*....|....*....|....*.
gi 488032726   1 MRQVKNERQVIVVTHSSTIVTNADAEQVIVLKSDNK 36
Cdd:COG4637  303 LREASERTQVIVTTHSPALLDALEPEEVLVLEREDD 338
 
Name Accession Description Interval E-value
COG4637 COG4637
Predicted ATPase [General function prediction only];
1-36 4.84e-05

Predicted ATPase [General function prediction only];


Pssm-ID: 443675 [Multi-domain]  Cd Length: 371  Bit Score: 39.53  E-value: 4.84e-05
                         10        20        30
                 ....*....|....*....|....*....|....*.
gi 488032726   1 MRQVKNERQVIVVTHSSTIVTNADAEQVIVLKSDNK 36
Cdd:COG4637  303 LREASERTQVIVTTHSPALLDALEPEEVLVLEREDD 338
 
Name Accession Description Interval E-value
COG4637 COG4637
Predicted ATPase [General function prediction only];
1-36 4.84e-05

Predicted ATPase [General function prediction only];


Pssm-ID: 443675 [Multi-domain]  Cd Length: 371  Bit Score: 39.53  E-value: 4.84e-05
                         10        20        30
                 ....*....|....*....|....*....|....*.
gi 488032726   1 MRQVKNERQVIVVTHSSTIVTNADAEQVIVLKSDNK 36
Cdd:COG4637  303 LREASERTQVIVTTHSPALLDALEPEEVLVLEREDD 338
YbjD COG3593
Predicted ATP-dependent endonuclease of the OLD family, contains P-loop ATPase and TOPRIM ...
 5-59 1.26e-04

Predicted ATP-dependent endonuclease of the OLD family, contains P-loop ATPase and TOPRIM domains [Replication, recombination and repair];


Pssm-ID: 442812 [Multi-domain]  Cd Length: 359  Bit Score: 38.06  E-value: 1.26e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 488032726   5 KNERQVIVVTHSSTIVTNADAEQVIVLKSDNKHGWIENRGYPSDKiVMKYIVQYL 59
Cdd:COG3593  217 EKPNQVIITTHSPHLLSEVPLENIRRLRRDSGGTTSTKLIDLDDE-DLRKLLRYL 270
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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