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Conserved domains on  [gi|488045696|ref|WP_002117093|]
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MULTISPECIES: hypothetical protein [Acinetobacter]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PspC_subgroup_1 super family cl41462
pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, ...
 41-76 2.61e-04

pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A. The other form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site.


The actual alignment was detected with superfamily member NF033838:

Pssm-ID: 468201 [Multi-domain]  Cd Length: 684  Bit Score: 39.61  E-value: 2.61e-04
                         10        20        30
                 ....*....|....*....|....*....|....*.
gi 488045696  41 PLVDPQPASTPAPAKPKPADPLPSSEPLAENASSQQ 76
Cdd:NF033838 416 PAEQPQPAPAPQPEKPAPKPEKPAEQPKAEKPADQQ 451
 
Name Accession Description Interval E-value
PspC_subgroup_1 NF033838
pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, ...
 41-76 2.61e-04

pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A. The other form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site.


Pssm-ID: 468201 [Multi-domain]  Cd Length: 684  Bit Score: 39.61  E-value: 2.61e-04
                         10        20        30
                 ....*....|....*....|....*....|....*.
gi 488045696  41 PLVDPQPASTPAPAKPKPADPLPSSEPLAENASSQQ 76
Cdd:NF033838 416 PAEQPQPAPAPQPEKPAPKPEKPAEQPKAEKPADQQ 451
PRK05641 PRK05641
putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
 40-90 3.61e-03

putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated


Pssm-ID: 235540 [Multi-domain]  Cd Length: 153  Bit Score: 35.61  E-value: 3.61e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|.
gi 488045696  40 APLVDPQPASTPAPAKPKPADPLPSSEPLAENASSQqlVSENVLKEPVPAQ 90
Cdd:PRK05641  46 SAVQEQVPTPAPAPAPAVPSAPTPVAPAAPAPAPAS--AGENVVTAPMPGK 94
 
Name Accession Description Interval E-value
PspC_subgroup_1 NF033838
pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, ...
 41-76 2.61e-04

pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A. The other form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site.


Pssm-ID: 468201 [Multi-domain]  Cd Length: 684  Bit Score: 39.61  E-value: 2.61e-04
                         10        20        30
                 ....*....|....*....|....*....|....*.
gi 488045696  41 PLVDPQPASTPAPAKPKPADPLPSSEPLAENASSQQ 76
Cdd:NF033838 416 PAEQPQPAPAPQPEKPAPKPEKPAEQPKAEKPADQQ 451
PRK05641 PRK05641
putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
 40-90 3.61e-03

putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated


Pssm-ID: 235540 [Multi-domain]  Cd Length: 153  Bit Score: 35.61  E-value: 3.61e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|.
gi 488045696  40 APLVDPQPASTPAPAKPKPADPLPSSEPLAENASSQqlVSENVLKEPVPAQ 90
Cdd:PRK05641  46 SAVQEQVPTPAPAPAPAVPSAPTPVAPAAPAPAPAS--AGENVVTAPMPGK 94
PHA03247 PHA03247
large tegument protein UL36; Provisional
 35-67 9.62e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 35.30  E-value: 9.62e-03
                          10        20        30
                  ....*....|....*....|....*....|...
gi 488045696   35 KTESSAPLVDPQPASTPAPAKPKPADPLPSSEP 67
Cdd:PHA03247  408 AAPVPASVPTPAPTPVPASAPPPPATPLPSAEP 440
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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