NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|488074860|ref|WP_002146257|]
View 

MULTISPECIES: BC1881 family protein [Bacillus]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
phage_BC1881 NF033495
BC1881 family protein; Members of this family of very small proteins (average length is about ...
 4-48 3.10e-14

BC1881 family protein; Members of this family of very small proteins (average length is about 50 residues) include BC1881 from the phBC6A51 prophage region of the Bacillus cereus ATCC 14579 genome.


:

Pssm-ID: 411137  Cd Length: 45  Bit Score: 58.80  E-value: 3.10e-14
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*
gi 488074860  4 IPTDVLSKELMEREGVISITVKEFEKIEVAGVVVSGPAVILINQD 48
Cdd:NF033495  1 VSTKELSEELKKREGVETINVEPYEKIEVGGIKVEGPAIILINQD 45
 
Name Accession Description Interval E-value
phage_BC1881 NF033495
BC1881 family protein; Members of this family of very small proteins (average length is about ...
 4-48 3.10e-14

BC1881 family protein; Members of this family of very small proteins (average length is about 50 residues) include BC1881 from the phBC6A51 prophage region of the Bacillus cereus ATCC 14579 genome.


Pssm-ID: 411137  Cd Length: 45  Bit Score: 58.80  E-value: 3.10e-14
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*
gi 488074860  4 IPTDVLSKELMEREGVISITVKEFEKIEVAGVVVSGPAVILINQD 48
Cdd:NF033495  1 VSTKELSEELKKREGVETINVEPYEKIEVGGIKVEGPAIILINQD 45
 
Name Accession Description Interval E-value
phage_BC1881 NF033495
BC1881 family protein; Members of this family of very small proteins (average length is about ...
 4-48 3.10e-14

BC1881 family protein; Members of this family of very small proteins (average length is about 50 residues) include BC1881 from the phBC6A51 prophage region of the Bacillus cereus ATCC 14579 genome.


Pssm-ID: 411137  Cd Length: 45  Bit Score: 58.80  E-value: 3.10e-14
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*
gi 488074860  4 IPTDVLSKELMEREGVISITVKEFEKIEVAGVVVSGPAVILINQD 48
Cdd:NF033495  1 VSTKELSEELKKREGVETINVEPYEKIEVGGIKVEGPAIILINQD 45
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH