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Conserved domains on  [gi|488094702|ref|WP_002166099|]
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MULTISPECIES: regulatory YrvL family protein [Bacillus cereus group]

Protein Classification

regulatory YrvL family protein( domain architecture ID 10624532)

regulatory YrvL family protein similar to Bacillus subtilis membrane-bound negative regulator YvrL that negatively regulates RNA polymerase sigma factor SigO-dependent transcription

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
YrvL pfam14184
Regulatory protein YrvL; YrvL prevents expression and activity of the YrvI sigma factor. It ...
 36-141 1.90e-17

Regulatory protein YrvL; YrvL prevents expression and activity of the YrvI sigma factor. It may function as an anti-sigma factor


:

Pssm-ID: 433758  Cd Length: 121  Bit Score: 72.67  E-value: 1.90e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488094702   36 VYVGIFHITGIEYSSRTALLLFFLLILLLD-GITYFIFIFFKVLLHPmmTSMPNWLSIALLSIIEITLDWFVIHTADDWI 114
Cdd:pfam14184  17 VMGGIFSLLGISYESVGSLLLFFLIFFVLGlPFEFFEKILPKALLYL--KKLSKWLAKLLAFILDLTFTWLAIHTVDELM 94

                          90       100
                  ....*....|....*....|....*..
gi 488094702  115 ESVQMPNIAELCVTLFLYTLNKLFSDK 141
Cdd:pfam14184  95 SSVSISLLSEIIFALLLALLDKLFDKK 121
 
Name Accession Description Interval E-value
YrvL pfam14184
Regulatory protein YrvL; YrvL prevents expression and activity of the YrvI sigma factor. It ...
 36-141 1.90e-17

Regulatory protein YrvL; YrvL prevents expression and activity of the YrvI sigma factor. It may function as an anti-sigma factor


Pssm-ID: 433758  Cd Length: 121  Bit Score: 72.67  E-value: 1.90e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488094702   36 VYVGIFHITGIEYSSRTALLLFFLLILLLD-GITYFIFIFFKVLLHPmmTSMPNWLSIALLSIIEITLDWFVIHTADDWI 114
Cdd:pfam14184  17 VMGGIFSLLGISYESVGSLLLFFLIFFVLGlPFEFFEKILPKALLYL--KKLSKWLAKLLAFILDLTFTWLAIHTVDELM 94

                          90       100
                  ....*....|....*....|....*..
gi 488094702  115 ESVQMPNIAELCVTLFLYTLNKLFSDK 141
Cdd:pfam14184  95 SSVSISLLSEIIFALLLALLDKLFDKK 121
 
Name Accession Description Interval E-value
YrvL pfam14184
Regulatory protein YrvL; YrvL prevents expression and activity of the YrvI sigma factor. It ...
 36-141 1.90e-17

Regulatory protein YrvL; YrvL prevents expression and activity of the YrvI sigma factor. It may function as an anti-sigma factor


Pssm-ID: 433758  Cd Length: 121  Bit Score: 72.67  E-value: 1.90e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488094702   36 VYVGIFHITGIEYSSRTALLLFFLLILLLD-GITYFIFIFFKVLLHPmmTSMPNWLSIALLSIIEITLDWFVIHTADDWI 114
Cdd:pfam14184  17 VMGGIFSLLGISYESVGSLLLFFLIFFVLGlPFEFFEKILPKALLYL--KKLSKWLAKLLAFILDLTFTWLAIHTVDELM 94

                          90       100
                  ....*....|....*....|....*..
gi 488094702  115 ESVQMPNIAELCVTLFLYTLNKLFSDK 141
Cdd:pfam14184  95 SSVSISLLSEIIFALLLALLDKLFDKK 121
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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