|
Name |
Accession |
Description |
Interval |
E-value |
| TrmR |
COG4122 |
tRNA 5-hydroxyU34 O-methylase TrmR/YrrM [Translation, ribosomal structure and biogenesis]; ... |
37-195 |
5.90e-49 |
|
tRNA 5-hydroxyU34 O-methylase TrmR/YrrM [Translation, ribosomal structure and biogenesis]; tRNA 5-hydroxyU34 O-methylase TrmR/YrrM is part of the Pathway/BioSystem: tRNA modification
Pssm-ID: 443298 Cd Length: 173 Bit Score: 156.88 E-value: 5.90e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488129281 37 REMGQFLSILVKGCNVKKILEIGTSNGYSTLWLANAVEEtNGNVTTVELSSERVGEALGNFRKVNFTQRIDIHNQEAGAF 116
Cdd:COG4122 2 PEQGRLLYLLARLLGAKRILEIGTGTGYSTLWLARALPD-DGRLTTIEIDPERAAIARENFARAGLADRIRLILGDALEV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488129281 117 LDSQLDHSFDFIFLDSERTQYMWWWEHIKRILEPKGFLVIDNAASH------------AEELAEFIKMIEEDDTFETVLL 184
Cdd:COG4122 81 LPRLADGPFDLVFIDADKSNYPDYLELALPLLRPGGLIVADNVLWHgrvadparrdpsTRAIREFNEYLREDPRLESVLL 160
|
170
....*....|.
gi 488129281 185 AFQKGAFVARK 195
Cdd:COG4122 161 PIGDGLLLARK 171
|
|
| Methyltransf_3 |
pfam01596 |
O-methyltransferase; Members of this family are O-methyltransferases. The family includes ... |
15-195 |
7.28e-23 |
|
O-methyltransferase; Members of this family are O-methyltransferases. The family includes catechol o-methyltransferase, caffeoyl-CoA O-methyltransferase and a family of bacterial O-methyltransferases that may be involved in antibiotic production.
Pssm-ID: 396257 [Multi-domain] Cd Length: 203 Bit Score: 91.02 E-value: 7.28e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488129281 15 EQYGEEHDRHKKTREEKLRN------ISREMGQFLSILVKGCNVKKILEIGTSNGYSTLWLANAVEEtNGNVTTVELSSE 88
Cdd:pfam01596 1 ETSAYEHEYLKELREETAKLplapmqVSPDEGQFLGMLVKLTGAKNVLEIGVFTGYSALAMALALPE-DGKITAIDIDPE 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488129281 89 RVGEALGNFRKVNFTQRIDIHNQEAGAFLDS----QLDHSFDFIFLDSERTQYMWWWEHIKRILEPKGFLVIDNA----- 159
Cdd:pfam01596 80 AYEIAKKFIQKAGVAHKISFILGPALKVLEQltqdKPLPEFDFIFIDADKSNYPNYYERLLELLKVGGLMAIDNTlwhgk 159
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 488129281 160 -------ASHAEELAEFIKMIEEDDTFETVLLAFQKGAFVARK 195
Cdd:pfam01596 160 vtepddqEAKTQRLQEFNKDLAQDPRVEISVIPVGDGITLCRK 202
|
|
| PLN02781 |
PLN02781 |
Probable caffeoyl-CoA O-methyltransferase |
17-188 |
5.42e-15 |
|
Probable caffeoyl-CoA O-methyltransferase
Pssm-ID: 215417 Cd Length: 234 Bit Score: 70.62 E-value: 5.42e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488129281 17 YGEEHDRHKKTRE---EKLRNISrEM------GQFLSILVKGCNVKKILEIGTSNGYSTLWLANAVEEtNGNVTTVELSS 87
Cdd:PLN02781 26 YPREHELLKELREatvQKYGNLS-EMevpvdeGLFLSMLVKIMNAKNTLEIGVFTGYSLLTTALALPE-DGRITAIDIDK 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488129281 88 ERVGEALGNFRKVNFTQRIDIHNQEAGAFLDSQLDHS----FDFIFLDSERTQYMWWWEHIKRILEPKGFLVIDNA---- 159
Cdd:PLN02781 104 EAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDpkpeFDFAFVDADKPNYVHFHEQLLKLVKVGGIIAFDNTlwfg 183
|
170 180 190
....*....|....*....|....*....|.
gi 488129281 160 --ASHAEELAEFIKMIeeddtfETVLLAFQK 188
Cdd:PLN02781 184 fvAQEEDEVPEHMRAY------RKALLEFNK 208
|
|
| AdoMet_MTases |
cd02440 |
S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; ... |
54-156 |
5.00e-07 |
|
S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Pssm-ID: 100107 [Multi-domain] Cd Length: 107 Bit Score: 46.27 E-value: 5.00e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488129281 54 KILEIGTSNGYSTLWLANAVeetNGNVTTVELSSERVGEALGNFRKvNFTQRIDIHNQEAGAFLDsQLDHSFDFIFLDSE 133
Cdd:cd02440 1 RVLDLGCGTGALALALASGP---GARVTGVDISPVALELARKAAAA-LLADNVEVLKGDAEELPP-EADESFDVIISDPP 75
|
90 100 110
....*....|....*....|....*....|
gi 488129281 134 rtqYMWWWEHIKRILE-------PKGFLVI 156
Cdd:cd02440 76 ---LHHLVEDLARFLEearrllkPGGVLVL 102
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| TrmR |
COG4122 |
tRNA 5-hydroxyU34 O-methylase TrmR/YrrM [Translation, ribosomal structure and biogenesis]; ... |
37-195 |
5.90e-49 |
|
tRNA 5-hydroxyU34 O-methylase TrmR/YrrM [Translation, ribosomal structure and biogenesis]; tRNA 5-hydroxyU34 O-methylase TrmR/YrrM is part of the Pathway/BioSystem: tRNA modification
Pssm-ID: 443298 Cd Length: 173 Bit Score: 156.88 E-value: 5.90e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488129281 37 REMGQFLSILVKGCNVKKILEIGTSNGYSTLWLANAVEEtNGNVTTVELSSERVGEALGNFRKVNFTQRIDIHNQEAGAF 116
Cdd:COG4122 2 PEQGRLLYLLARLLGAKRILEIGTGTGYSTLWLARALPD-DGRLTTIEIDPERAAIARENFARAGLADRIRLILGDALEV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488129281 117 LDSQLDHSFDFIFLDSERTQYMWWWEHIKRILEPKGFLVIDNAASH------------AEELAEFIKMIEEDDTFETVLL 184
Cdd:COG4122 81 LPRLADGPFDLVFIDADKSNYPDYLELALPLLRPGGLIVADNVLWHgrvadparrdpsTRAIREFNEYLREDPRLESVLL 160
|
170
....*....|.
gi 488129281 185 AFQKGAFVARK 195
Cdd:COG4122 161 PIGDGLLLARK 171
|
|
| Methyltransf_3 |
pfam01596 |
O-methyltransferase; Members of this family are O-methyltransferases. The family includes ... |
15-195 |
7.28e-23 |
|
O-methyltransferase; Members of this family are O-methyltransferases. The family includes catechol o-methyltransferase, caffeoyl-CoA O-methyltransferase and a family of bacterial O-methyltransferases that may be involved in antibiotic production.
Pssm-ID: 396257 [Multi-domain] Cd Length: 203 Bit Score: 91.02 E-value: 7.28e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488129281 15 EQYGEEHDRHKKTREEKLRN------ISREMGQFLSILVKGCNVKKILEIGTSNGYSTLWLANAVEEtNGNVTTVELSSE 88
Cdd:pfam01596 1 ETSAYEHEYLKELREETAKLplapmqVSPDEGQFLGMLVKLTGAKNVLEIGVFTGYSALAMALALPE-DGKITAIDIDPE 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488129281 89 RVGEALGNFRKVNFTQRIDIHNQEAGAFLDS----QLDHSFDFIFLDSERTQYMWWWEHIKRILEPKGFLVIDNA----- 159
Cdd:pfam01596 80 AYEIAKKFIQKAGVAHKISFILGPALKVLEQltqdKPLPEFDFIFIDADKSNYPNYYERLLELLKVGGLMAIDNTlwhgk 159
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 488129281 160 -------ASHAEELAEFIKMIEEDDTFETVLLAFQKGAFVARK 195
Cdd:pfam01596 160 vtepddqEAKTQRLQEFNKDLAQDPRVEISVIPVGDGITLCRK 202
|
|
| PLN02781 |
PLN02781 |
Probable caffeoyl-CoA O-methyltransferase |
17-188 |
5.42e-15 |
|
Probable caffeoyl-CoA O-methyltransferase
Pssm-ID: 215417 Cd Length: 234 Bit Score: 70.62 E-value: 5.42e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488129281 17 YGEEHDRHKKTRE---EKLRNISrEM------GQFLSILVKGCNVKKILEIGTSNGYSTLWLANAVEEtNGNVTTVELSS 87
Cdd:PLN02781 26 YPREHELLKELREatvQKYGNLS-EMevpvdeGLFLSMLVKIMNAKNTLEIGVFTGYSLLTTALALPE-DGRITAIDIDK 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488129281 88 ERVGEALGNFRKVNFTQRIDIHNQEAGAFLDSQLDHS----FDFIFLDSERTQYMWWWEHIKRILEPKGFLVIDNA---- 159
Cdd:PLN02781 104 EAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDpkpeFDFAFVDADKPNYVHFHEQLLKLVKVGGIIAFDNTlwfg 183
|
170 180 190
....*....|....*....|....*....|.
gi 488129281 160 --ASHAEELAEFIKMIeeddtfETVLLAFQK 188
Cdd:PLN02781 184 fvAQEEDEVPEHMRAY------RKALLEFNK 208
|
|
| Methyltransf_24 |
pfam13578 |
Methyltransferase domain; This family appears to be a methyltransferase domain. |
56-158 |
1.96e-14 |
|
Methyltransferase domain; This family appears to be a methyltransferase domain.
Pssm-ID: 433324 [Multi-domain] Cd Length: 106 Bit Score: 66.18 E-value: 1.96e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488129281 56 LEIGTSNGYSTLWLANAVEETN-GNVTTVELsSERVGEALGNFRKVNFTQRIDIHNQEAGAFLDSQLDHSFDFIFLDS-- 132
Cdd:pfam13578 1 VEIGTYSGVSTLWLAAALRDNGlGRLTAVDP-DPGAEEAGALLRKAGLDDRVRLIVGDSREALPSLADGPIDLLFIDGdh 79
|
90 100
....*....|....*....|....*.
gi 488129281 133 ERTQYMWWWEHIKRILEPKGFLVIDN 158
Cdd:pfam13578 80 TYEAVLNDLELWLPRLAPGGVILFHD 105
|
|
| PLN02589 |
PLN02589 |
caffeoyl-CoA O-methyltransferase |
17-158 |
1.16e-12 |
|
caffeoyl-CoA O-methyltransferase
Pssm-ID: 166230 Cd Length: 247 Bit Score: 64.24 E-value: 1.16e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488129281 17 YGEEHDRHKKTREEKLR---NI---SREMGQFLSILVKGCNVKKILEIGTSNGYSTLWLANAVEEtNGNVTTVELSSERV 90
Cdd:PLN02589 39 YPREPESMKELRELTAKhpwNImttSADEGQFLNMLLKLINAKNTMEIGVYTGYSLLATALALPE-DGKILAMDINRENY 117
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 488129281 91 GEALGNFRKVNFTQRIDIHNQEAGAFLDSQLDH-----SFDFIFLDSERTQYMWWWEHIKRILEPKGFLVIDN 158
Cdd:PLN02589 118 ELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDgkyhgTFDFIFVDADKDNYINYHKRLIDLVKVGGVIGYDN 190
|
|
| PLN02476 |
PLN02476 |
O-methyltransferase |
25-195 |
3.65e-10 |
|
O-methyltransferase
Pssm-ID: 178094 Cd Length: 278 Bit Score: 57.76 E-value: 3.65e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488129281 25 KKTREE--KLR----NISREMGQFLSILVKGCNVKKILEIGTSNGYSTLWLANAVEETnGNVTTVELSSERVGEALGNFR 98
Cdd:PLN02476 86 RQLREEtsKMRgsqmQVSPDQAQLLAMLVQILGAERCIEVGVYTGYSSLAVALVLPES-GCLVACERDSNSLEVAKRYYE 164
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488129281 99 KVNFTQRIDIHNQEAGAFLDSQL----DHSFDFIFLDSERTQYMWWWEHIKRILEPKGFLVIDNAASHAE---------- 164
Cdd:PLN02476 165 LAGVSHKVNVKHGLAAESLKSMIqngeGSSYDFAFVDADKRMYQDYFELLLQLVRVGGVIVMDNVLWHGRvadplvndak 244
|
170 180 190
....*....|....*....|....*....|...
gi 488129281 165 --ELAEFIKMIEEDDTFETVLLAFQKGAFVARK 195
Cdd:PLN02476 245 tiSIRNFNKKLMDDKRVSISMVPIGDGMTICRK 277
|
|
| Gcd14 |
COG2519 |
tRNA A58 N-methylase Trm61 [Translation, ribosomal structure and biogenesis]; tRNA A58 ... |
53-156 |
3.34e-09 |
|
tRNA A58 N-methylase Trm61 [Translation, ribosomal structure and biogenesis]; tRNA A58 N-methylase Trm61 is part of the Pathway/BioSystem: tRNA modification
Pssm-ID: 442009 [Multi-domain] Cd Length: 249 Bit Score: 54.78 E-value: 3.34e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488129281 53 KKILEIGTSNGYSTLWLANAVEETnGNVTTVELSSERVGEALGNFRKVNFTQRIDIHNQEAGAFLDsqlDHSFDFIFLDs 132
Cdd:COG2519 93 ARVLEAGTGSGALTLALARAVGPE-GKVYSYERREDFAEIARKNLERFGLPDNVELKLGDIREGID---EGDVDAVFLD- 167
|
90 100
....*....|....*....|....*...
gi 488129281 133 ertqyM---W-WWEHIKRILEPKGFLVI 156
Cdd:COG2519 168 -----MpdpWeALEAVAKALKPGGVLVA 190
|
|
| SmtA |
COG0500 |
SAM-dependent methyltransferase [Secondary metabolites biosynthesis, transport and catabolism, ... |
54-168 |
7.30e-08 |
|
SAM-dependent methyltransferase [Secondary metabolites biosynthesis, transport and catabolism, General function prediction only];
Pssm-ID: 440266 [Multi-domain] Cd Length: 199 Bit Score: 50.30 E-value: 7.30e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488129281 54 KILEIGTSNGYSTLWLANAveeTNGNVTTVELSSERVGEALGNFRKVNFTQrIDIHNQEAGAFLDSQLDHsFDFIFLD-- 131
Cdd:COG0500 29 RVLDLGCGTGRNLLALAAR---FGGRVIGIDLSPEAIALARARAAKAGLGN-VEFLVADLAELDPLPAES-FDLVVAFgv 103
|
90 100 110 120
....*....|....*....|....*....|....*....|...
gi 488129281 132 ------SERTQYMwwwEHIKRILEPKGFLVIDNAASHAEELAE 168
Cdd:COG0500 104 lhhlppEEREALL---RELARALKPGGVLLLSASDAAAALSLA 143
|
|
| Cfa |
COG2230 |
Cyclopropane fatty-acyl-phospholipid synthase and related methyltransferases [Lipid transport ... |
54-156 |
3.14e-07 |
|
Cyclopropane fatty-acyl-phospholipid synthase and related methyltransferases [Lipid transport and metabolism];
Pssm-ID: 441831 [Multi-domain] Cd Length: 158 Bit Score: 48.00 E-value: 3.14e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488129281 54 KILEIGTSNGYSTLWLAnavEETNGNVTTVELSSERVGEALGNFRKVNFTQRIDIHNQEagaFLDSQLDHSFDFIFL--- 130
Cdd:COG2230 54 RVLDIGCGWGGLALYLA---RRYGVRVTGVTLSPEQLEYARERAAEAGLADRVEVRLAD---YRDLPADGQFDAIVSigm 127
|
90 100 110
....*....|....*....|....*....|.
gi 488129281 131 -----DSERTQYMwwwEHIKRILEPKGFLVI 156
Cdd:COG2230 128 fehvgPENYPAYF---AKVARLLKPGGRLLL 155
|
|
| UbiE |
COG2226 |
Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG [Coenzyme transport and metabolism]; ... |
53-171 |
3.95e-07 |
|
Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG [Coenzyme transport and metabolism]; Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG is part of the Pathway/BioSystem: Biotin biosynthesis
Pssm-ID: 441828 [Multi-domain] Cd Length: 143 Bit Score: 47.30 E-value: 3.95e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488129281 53 KKILEIGTSNGYSTLWLAnaveETNGNVTTVELSSERVGEALGNFRKVNFtqRIDIHNQEAGAF-LDsqlDHSFDFIFLd 131
Cdd:COG2226 24 ARVLDLGCGTGRLALALA----ERGARVTGVDISPEMLELARERAAEAGL--NVEFVVGDAEDLpFP---DGSFDLVIS- 93
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 488129281 132 serTQYMWWWEH-------IKRILEPKG-FLVIDNAASHAEELAEFIK 171
Cdd:COG2226 94 ---SFVLHHLPDperalaeIARVLKPGGrLVVVDFSPPDLAELEELLA 138
|
|
| AdoMet_MTases |
cd02440 |
S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; ... |
54-156 |
5.00e-07 |
|
S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Pssm-ID: 100107 [Multi-domain] Cd Length: 107 Bit Score: 46.27 E-value: 5.00e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488129281 54 KILEIGTSNGYSTLWLANAVeetNGNVTTVELSSERVGEALGNFRKvNFTQRIDIHNQEAGAFLDsQLDHSFDFIFLDSE 133
Cdd:cd02440 1 RVLDLGCGTGALALALASGP---GARVTGVDISPVALELARKAAAA-LLADNVEVLKGDAEELPP-EADESFDVIISDPP 75
|
90 100 110
....*....|....*....|....*....|
gi 488129281 134 rtqYMWWWEHIKRILE-------PKGFLVI 156
Cdd:cd02440 76 ---LHHLVEDLARFLEearrllkPGGVLVL 102
|
|
| Methyltransf_25 |
pfam13649 |
Methyltransferase domain; This family appears to be a methyltransferase domain. |
55-152 |
7.48e-07 |
|
Methyltransferase domain; This family appears to be a methyltransferase domain.
Pssm-ID: 463945 [Multi-domain] Cd Length: 96 Bit Score: 45.63 E-value: 7.48e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488129281 55 ILEIGTSNGYSTLWLANAVeetNGNVTTVELSSERVGEALGNFRKVNFtqRIDIHNQEAGAFldSQLDHSFDFIFL---- 130
Cdd:pfam13649 1 VLDLGCGTGRLTLALARRG---GARVTGVDLSPEMLERARERAAEAGL--NVEFVQGDAEDL--PFPDGSFDLVVSsgvl 73
|
90 100
....*....|....*....|....*.
gi 488129281 131 ----DSERTQYMwwwEHIKRILEPKG 152
Cdd:pfam13649 74 hhlpDPDLEAAL---REIARVLKPGG 96
|
|
| UbiG |
COG2227 |
2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme transport and ... |
53-156 |
3.12e-06 |
|
2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme transport and metabolism]; 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase is part of the Pathway/BioSystem: Ubiquinone biosynthesis
Pssm-ID: 441829 [Multi-domain] Cd Length: 126 Bit Score: 44.62 E-value: 3.12e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488129281 53 KKILEIGTSNGYSTLWLANAVEEtngnVTTVELSSERVGEALGNFRKVNftqrIDIHNQEAGAFldSQLDHSFDFIFL-- 130
Cdd:COG2227 26 GRVLDVGCGTGRLALALARRGAD----VTGVDISPEALEIARERAAELN----VDFVQGDLEDL--PLEDGSFDLVICse 95
|
90 100 110
....*....|....*....|....*....|..
gi 488129281 131 ------DSERtqymwWWEHIKRILEPKGFLVI 156
Cdd:COG2227 96 vlehlpDPAA-----LLRELARLLKPGGLLLL 122
|
|
| Methyltransf_11 |
pfam08241 |
Methyltransferase domain; Members of this family are SAM dependent methyltransferases. |
56-156 |
8.61e-06 |
|
Methyltransferase domain; Members of this family are SAM dependent methyltransferases.
Pssm-ID: 462406 [Multi-domain] Cd Length: 94 Bit Score: 42.65 E-value: 8.61e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488129281 56 LEIGTSNGYSTLWLAnaveETNGNVTTVELSSERVGEALGNFRKVNFTQRIdihnqeaGAFLDSQL-DHSFDFIFLdser 134
Cdd:pfam08241 1 LDVGCGTGLLTELLA----RLGARVTGVDISPEMLELAREKAPREGLTFVV-------GDAEDLPFpDNSFDLVLS---- 65
|
90 100
....*....|....*....|....*....
gi 488129281 135 TQYMWWWEH-------IKRILEPKGFLVI 156
Cdd:pfam08241 66 SEVLHHVEDperalreIARVLKPGGILII 94
|
|
| TrmN6 |
COG4123 |
tRNA1(Val) A37 N6-methylase TrmN6 [Translation, ribosomal structure and biogenesis]; tRNA1(Val) ... |
51-175 |
1.24e-04 |
|
tRNA1(Val) A37 N6-methylase TrmN6 [Translation, ribosomal structure and biogenesis]; tRNA1(Val) A37 N6-methylase TrmN6 is part of the Pathway/BioSystem: tRNA modification
Pssm-ID: 443299 [Multi-domain] Cd Length: 238 Bit Score: 41.28 E-value: 1.24e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488129281 51 NVKKILEIGTSNGYSTLWLANAVEetNGNVTTVELSSERVGEALGNFRKVNFTQRIDIHNQEAGAFLDSQLDHSFDFIF- 129
Cdd:COG4123 37 KGGRVLDLGTGTGVIALMLAQRSP--GARITGVEIQPEAAELARRNVALNGLEDRITVIHGDLKEFAAELPPGSFDLVVs 114
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 488129281 130 -------------LDSERTQYMW--------WWEHIKRILEPKG--FLVIdnaasHAEELAEFIKMIEE 175
Cdd:COG4123 115 nppyfkagsgrksPDEARAIARHedaltledLIRAAARLLKPGGrfALIH-----PAERLAEILAALRK 178
|
|
| RsmD |
COG0742 |
16S rRNA G966 N2-methylase RsmD [Translation, ribosomal structure and biogenesis]; 16S rRNA ... |
80-131 |
2.09e-03 |
|
16S rRNA G966 N2-methylase RsmD [Translation, ribosomal structure and biogenesis]; 16S rRNA G966 N2-methylase RsmD is part of the Pathway/BioSystem: 16S rRNA modification
Pssm-ID: 440505 [Multi-domain] Cd Length: 183 Bit Score: 37.37 E-value: 2.09e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|..
gi 488129281 80 VTTVELSSERVGEALGNFRKVNFTQRIDIHNQEAGAFLDSQLDHSFDFIFLD 131
Cdd:COG0742 67 VVFVEKDRKAAAVIRKNLEKLGLEDRARVIRGDALRFLKRLAGEPFDLVFLD 118
|
|
| GCD14 |
pfam08704 |
tRNA methyltransferase complex GCD14 subunit; GCD14 is a subunit of the tRNA methyltransferase ... |
46-131 |
2.51e-03 |
|
tRNA methyltransferase complex GCD14 subunit; GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA.
Pssm-ID: 312288 Cd Length: 242 Bit Score: 37.47 E-value: 2.51e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488129281 46 LVKGCNVkkiLEIGTSNGYSTLWLANAVEETnGNVTTVELSSERVGEALGNFRKVNFTQRIDIHNQEA--GAFLdSQLDH 123
Cdd:pfam08704 38 LRPGSVV---CESGTGSGSLSHAIIRTVAPT-GHLFTFEFHEQRADKAREEFREHGIDQLVTVTHRDVckEGFL-TEVSG 112
|
....*...
gi 488129281 124 SFDFIFLD 131
Cdd:pfam08704 113 KADAVFLD 120
|
|
| Methyltransf_31 |
pfam13847 |
Methyltransferase domain; This family appears to have methyltransferase activity. |
53-179 |
6.59e-03 |
|
Methyltransferase domain; This family appears to have methyltransferase activity.
Pssm-ID: 463998 [Multi-domain] Cd Length: 150 Bit Score: 35.47 E-value: 6.59e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488129281 53 KKILEIGTSNGYSTLWLANAVEEtNGNVTTVELSSERVGEALGNFRKVNFTqRIDIHNQEAGAFLDSQLDHSFDFIFLDS 132
Cdd:pfam13847 5 MRVLDLGCGTGHLSFELAEELGP-NAEVVGIDISEEAIEKARENAQKLGFD-NVEFEQGDIEELPELLEDDKFDVVISNC 82
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 488129281 133 ------ERTQYMwwwEHIKRILEPKGFLVIDNAAShaeeLAEFIKMIEEDDTF 179
Cdd:pfam13847 83 vlnhipDPDKVL---QEILRVLKPGGRLIISDPDS----LAELPAHVKEDSTY 128
|
|
| |
