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Conserved domains on  [gi|488139531|ref|WP_002210739|]
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peptidoglycan-associated lipoprotein Pal [Yersinia pestis]

Protein Classification

PRK10802 family protein( domain architecture ID 11484955)

PRK10802 family protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK10802 PRK10802
peptidoglycan-associated lipoprotein Pal;
1-168 1.08e-119

peptidoglycan-associated lipoprotein Pal;


:

Pssm-ID: 182744 [Multi-domain]  Cd Length: 173  Bit Score: 334.92  E-value: 1.08e-119
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488139531   1 MQLNKVLKGLMLALPVLAVAACSSNKSANNDQS----GMGAGTGTE-NGSNLSSEEQARLQMQELQKNNIVYFGFDKYDI 75
Cdd:PRK10802   1 MQLNKVLKGLMLALPVMAIAACSSNKNASNDQSegmlGAGTGMDANgGNGNMSSEEQARLQMQQLQQNNIVYFDLDKYDI 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488139531  76 GSDFAQMLDAHAAFLRSNPSDKVVVEGHADERGTPEYNIALGERRASAVKMYLQGKGVSADQISIVSYGKEKPAVLGHDE 155
Cdd:PRK10802  81 RSDFAQMLDAHANFLRSNPSYKVTVEGHADERGTPEYNIALGERRANAVKMYLQGKGVSADQISIVSYGKEKPAVLGHDE 160

                        170
                 ....*....|...
gi 488139531 156 AAFAKNRRAVLVY 168
Cdd:PRK10802 161 AAYAKNRRAVLVY 173
 
Name Accession Description Interval E-value
PRK10802 PRK10802
peptidoglycan-associated lipoprotein Pal;
1-168 1.08e-119

peptidoglycan-associated lipoprotein Pal;


Pssm-ID: 182744 [Multi-domain]  Cd Length: 173  Bit Score: 334.92  E-value: 1.08e-119
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488139531   1 MQLNKVLKGLMLALPVLAVAACSSNKSANNDQS----GMGAGTGTE-NGSNLSSEEQARLQMQELQKNNIVYFGFDKYDI 75
Cdd:PRK10802   1 MQLNKVLKGLMLALPVMAIAACSSNKNASNDQSegmlGAGTGMDANgGNGNMSSEEQARLQMQQLQQNNIVYFDLDKYDI 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488139531  76 GSDFAQMLDAHAAFLRSNPSDKVVVEGHADERGTPEYNIALGERRASAVKMYLQGKGVSADQISIVSYGKEKPAVLGHDE 155
Cdd:PRK10802  81 RSDFAQMLDAHANFLRSNPSYKVTVEGHADERGTPEYNIALGERRANAVKMYLQGKGVSADQISIVSYGKEKPAVLGHDE 160

                        170
                 ....*....|...
gi 488139531 156 AAFAKNRRAVLVY 168
Cdd:PRK10802 161 AAYAKNRRAVLVY 173
Pal_lipo TIGR02802
peptidoglycan-associated lipoprotein; Members of this protein are Pal (also called OprL), the ...
 65-168 3.52e-67

peptidoglycan-associated lipoprotein; Members of this protein are Pal (also called OprL), the Peptidoglycan-Associated Lipoprotein of the Tol-Pal system. The system appears to be involved both in the maintenance of outer membrane integrity and in the import of certain organic molecules as nutrients. Members of this family contain a hydrodrophobic lipoprotein signal sequence, a conserved N-terminal cleavage and modification site, a poorly conserved low-complexity region, together comprising about 65 amino acids, and a well-conserved C-terminal domain. The seed alignment for this model includes only the conserved C-terminal domain.


Pssm-ID: 274307 [Multi-domain]  Cd Length: 104  Bit Score: 199.71  E-value: 3.52e-67
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488139531   65 IVYFGFDKYDIGSDFAQMLDAHAAFLRSNPSDKVVVEGHADERGTPEYNIALGERRASAVKMYLQGKGVSADQISIVSYG 144
Cdd:TIGR02802   1 RVYFDFDSSDLKSEAQATLDAHAQYLKKNPSVRVTIEGHTDERGTREYNLALGERRANAVKDYLQSKGVSASQIETVSYG 80

                          90       100
                  ....*....|....*....|....
gi 488139531  145 KEKPAVLGHDEAAFAKNRRAVLVY 168
Cdd:TIGR02802  81 KEKPAALGHDEAAWAKNRRAVLVY 104
OmpA COG2885
Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall ...
 66-168 3.71e-40

Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442131 [Multi-domain]  Cd Length: 294  Bit Score: 137.22  E-value: 3.71e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488139531  66 VYFGFDKYDIGSDFAQMLDAHAAFLRSNPSDKVVVEGHADERGTPEYNIALGERRASAVKMYLQGKGVSADQISIVSYGK 145
Cdd:COG2885  189 VYFDFDSAELTPEAKAALDELAALLKENPDLRIEIEGHTDSRGSDAYNLALSERRAEAVKDYLVSKGIPASRITAVGYGE 268

                         90       100
                 ....*....|....*....|...
gi 488139531 146 EKPAVLGHDEAAFAKNRRAVLVY 168
Cdd:COG2885  269 SRPVASNDTEEGRAKNRRVEIVV 291
OmpA_C-like cd07185
Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; ...
 66-167 6.29e-40

Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; OmpA-like domains (named after the C-terminal domain of Escherichia coli OmpA protein) have been shown to non-covalently associate with peptidoglycan, a network of glycan chains composed of disaccharides, which are crosslinked via short peptide bridges. Well-studied members of this family include the Escherichia coli outer membrane protein OmpA, the Escherichia coli lipoprotein PAL, Neisseria meningitdis RmpM, which interact with the outer membrane, as well as the Escherichia coli motor protein MotB, and the Vibrio flagellar motor proteins PomB and MotY, which interact with the inner membrane.


Pssm-ID: 143586 [Multi-domain]  Cd Length: 106  Bit Score: 130.75  E-value: 6.29e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488139531  66 VYFGFDKYDIGSDFAQMLDAHAAFLRSNPSDKVVVEGHADERGTPEYNIALGERRASAVKMYLQGKGVSADQISIVSYGK 145
Cdd:cd07185    4 IYFDFGSAELTPEAKPLLDKLAEVLKKNPDAKIRIEGHTDSRGSDAYNQELSERRAEAVADYLVSKGVDASRITAVGYGE 83

                         90       100
                 ....*....|....*....|..
gi 488139531 146 EKPAVLGHDEAAFAKNRRAVLV 167
Cdd:cd07185   84 SRPIASNDTEEGRAKNRRVEIV 105
OmpA pfam00691
OmpA family; The Pfam entry also includes MotB and related proteins which are not included in ...
 68-161 5.13e-21

OmpA family; The Pfam entry also includes MotB and related proteins which are not included in the Prosite family.


Pssm-ID: 425825 [Multi-domain]  Cd Length: 95  Bit Score: 82.02  E-value: 5.13e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488139531   68 FGFDKYDIGSDFAQMLDAHAAFLRSNP-SDKVVVEGHADERGTPEYNIALGERRASAVKMYLQGKGVSADQISIVSYGKE 146
Cdd:pfam00691   1 FDPGSSQLTPKAKATLDEIADLLKFPElKNTITIEGHTDTVGSAAYNWELSQRRAEAVRRYLVNFGVPPSRISVVGYGAT 80

                          90
                  ....*....|....*
gi 488139531  147 KPAVLGHDEAAFAKN 161
Cdd:pfam00691  81 KPITDNKTPEGRARN 95
 
Name Accession Description Interval E-value
PRK10802 PRK10802
peptidoglycan-associated lipoprotein Pal;
1-168 1.08e-119

peptidoglycan-associated lipoprotein Pal;


Pssm-ID: 182744 [Multi-domain]  Cd Length: 173  Bit Score: 334.92  E-value: 1.08e-119
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488139531   1 MQLNKVLKGLMLALPVLAVAACSSNKSANNDQS----GMGAGTGTE-NGSNLSSEEQARLQMQELQKNNIVYFGFDKYDI 75
Cdd:PRK10802   1 MQLNKVLKGLMLALPVMAIAACSSNKNASNDQSegmlGAGTGMDANgGNGNMSSEEQARLQMQQLQQNNIVYFDLDKYDI 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488139531  76 GSDFAQMLDAHAAFLRSNPSDKVVVEGHADERGTPEYNIALGERRASAVKMYLQGKGVSADQISIVSYGKEKPAVLGHDE 155
Cdd:PRK10802  81 RSDFAQMLDAHANFLRSNPSYKVTVEGHADERGTPEYNIALGERRANAVKMYLQGKGVSADQISIVSYGKEKPAVLGHDE 160

                        170
                 ....*....|...
gi 488139531 156 AAFAKNRRAVLVY 168
Cdd:PRK10802 161 AAYAKNRRAVLVY 173
Pal_lipo TIGR02802
peptidoglycan-associated lipoprotein; Members of this protein are Pal (also called OprL), the ...
 65-168 3.52e-67

peptidoglycan-associated lipoprotein; Members of this protein are Pal (also called OprL), the Peptidoglycan-Associated Lipoprotein of the Tol-Pal system. The system appears to be involved both in the maintenance of outer membrane integrity and in the import of certain organic molecules as nutrients. Members of this family contain a hydrodrophobic lipoprotein signal sequence, a conserved N-terminal cleavage and modification site, a poorly conserved low-complexity region, together comprising about 65 amino acids, and a well-conserved C-terminal domain. The seed alignment for this model includes only the conserved C-terminal domain.


Pssm-ID: 274307 [Multi-domain]  Cd Length: 104  Bit Score: 199.71  E-value: 3.52e-67
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488139531   65 IVYFGFDKYDIGSDFAQMLDAHAAFLRSNPSDKVVVEGHADERGTPEYNIALGERRASAVKMYLQGKGVSADQISIVSYG 144
Cdd:TIGR02802   1 RVYFDFDSSDLKSEAQATLDAHAQYLKKNPSVRVTIEGHTDERGTREYNLALGERRANAVKDYLQSKGVSASQIETVSYG 80

                          90       100
                  ....*....|....*....|....
gi 488139531  145 KEKPAVLGHDEAAFAKNRRAVLVY 168
Cdd:TIGR02802  81 KEKPAALGHDEAAWAKNRRAVLVY 104
OmpA COG2885
Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall ...
 66-168 3.71e-40

Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442131 [Multi-domain]  Cd Length: 294  Bit Score: 137.22  E-value: 3.71e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488139531  66 VYFGFDKYDIGSDFAQMLDAHAAFLRSNPSDKVVVEGHADERGTPEYNIALGERRASAVKMYLQGKGVSADQISIVSYGK 145
Cdd:COG2885  189 VYFDFDSAELTPEAKAALDELAALLKENPDLRIEIEGHTDSRGSDAYNLALSERRAEAVKDYLVSKGIPASRITAVGYGE 268

                         90       100
                 ....*....|....*....|...
gi 488139531 146 EKPAVLGHDEAAFAKNRRAVLVY 168
Cdd:COG2885  269 SRPVASNDTEEGRAKNRRVEIVV 291
OmpA_C-like cd07185
Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; ...
 66-167 6.29e-40

Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; OmpA-like domains (named after the C-terminal domain of Escherichia coli OmpA protein) have been shown to non-covalently associate with peptidoglycan, a network of glycan chains composed of disaccharides, which are crosslinked via short peptide bridges. Well-studied members of this family include the Escherichia coli outer membrane protein OmpA, the Escherichia coli lipoprotein PAL, Neisseria meningitdis RmpM, which interact with the outer membrane, as well as the Escherichia coli motor protein MotB, and the Vibrio flagellar motor proteins PomB and MotY, which interact with the inner membrane.


Pssm-ID: 143586 [Multi-domain]  Cd Length: 106  Bit Score: 130.75  E-value: 6.29e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488139531  66 VYFGFDKYDIGSDFAQMLDAHAAFLRSNPSDKVVVEGHADERGTPEYNIALGERRASAVKMYLQGKGVSADQISIVSYGK 145
Cdd:cd07185    4 IYFDFGSAELTPEAKPLLDKLAEVLKKNPDAKIRIEGHTDSRGSDAYNQELSERRAEAVADYLVSKGVDASRITAVGYGE 83

                         90       100
                 ....*....|....*....|..
gi 488139531 146 EKPAVLGHDEAAFAKNRRAVLV 167
Cdd:cd07185   84 SRPIASNDTEEGRAKNRRVEIV 105
OmpA pfam00691
OmpA family; The Pfam entry also includes MotB and related proteins which are not included in ...
 68-161 5.13e-21

OmpA family; The Pfam entry also includes MotB and related proteins which are not included in the Prosite family.


Pssm-ID: 425825 [Multi-domain]  Cd Length: 95  Bit Score: 82.02  E-value: 5.13e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488139531   68 FGFDKYDIGSDFAQMLDAHAAFLRSNP-SDKVVVEGHADERGTPEYNIALGERRASAVKMYLQGKGVSADQISIVSYGKE 146
Cdd:pfam00691   1 FDPGSSQLTPKAKATLDEIADLLKFPElKNTITIEGHTDTVGSAAYNWELSQRRAEAVRRYLVNFGVPPSRISVVGYGAT 80

                          90
                  ....*....|....*
gi 488139531  147 KPAVLGHDEAAFAKN 161
Cdd:pfam00691  81 KPITDNKTPEGRARN 95
MotB COG1360
Flagellar motor protein MotB [Cell motility];
50-167 1.25e-14

Flagellar motor protein MotB [Cell motility];


Pssm-ID: 440971 [Multi-domain]  Cd Length: 174  Bit Score: 67.56  E-value: 1.25e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488139531  50 EEQARLQMQELqknniVYFGFDKYDIGSDFAQMLDAHAAFLRSNPsDKVVVEGHADER--GTPEY--NIALGERRASAVK 125
Cdd:COG1360   50 EEGLVIEIQDR-----VLFDSGSAELTPEGRELLDKIAAVLAEVP-NRIRVEGHTDNVpiSTARFpsNWELSAARAAAVV 123

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|..
gi 488139531 126 MYLQGKGVSADQISIVSYGKEKPAVLGHDEAAFAKNRRAVLV 167
Cdd:COG1360  124 RYLIEGGVPPERLSAVGYGDTRPLAPNDTPEGRARNRRVEIV 165
PRK10808 PRK10808
outer membrane protein A; Reviewed
 66-148 7.78e-12

outer membrane protein A; Reviewed


Pssm-ID: 236764 [Multi-domain]  Cd Length: 351  Bit Score: 62.02  E-value: 7.78e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488139531  66 VYFGFDKYDIGSDFAQMLDAHAAFLRS-NPSD-KVVVEGHADERGTPEYNIALGERRASAVKMYLQGKGVSADQISIVSY 143
Cdd:PRK10808 226 VLFNFNKATLKPEGQQALDQLYSQLSNlDPKDgSVVVLGYTDRIGSDAYNQGLSEKRAQSVVDYLVSKGIPADKISARGM 305


                 ....*
gi 488139531 144 GKEKP 148
Cdd:PRK10808 306 GKSNP 310
PRK10510 PRK10510
OmpA family lipoprotein;
80-163 9.39e-07

OmpA family lipoprotein;


Pssm-ID: 182507 [Multi-domain]  Cd Length: 219  Bit Score: 46.79  E-value: 9.39e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488139531  80 AQMLDAHAAFLRSNPSDKVVVEGHADERGTPEYNIALGERRASAVKMYLQGKGVSADQISIVSYGKEKPAVLGHDEAAFA 159
Cdd:PRK10510 128 ANTLTGVAMVLKEYPKTAVNVVGYTDSTGSHDLNMRLSQQRADSVASALITQGVDASRIRTQGMGPANPIASNSTAEGKA 207


                 ....
gi 488139531 160 KNRR 163
Cdd:PRK10510 208 QNRR 211
PRK09039 PRK09039
peptidoglycan -binding protein;
100-163 2.28e-06

peptidoglycan -binding protein;


Pssm-ID: 181619 [Multi-domain]  Cd Length: 343  Bit Score: 46.11  E-value: 2.28e-06
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 488139531 100 VEGHADER---GTPEY--NIALGERRASAVKMYLQGKGVSADQISIVSYGKEKPAVLGHDEAAFAKNRR 163
Cdd:PRK09039 267 VDGHTDNVplsGTGRFrdNWELSSARAISVVKFLIALGVPADRLAAAGFGEFQPLDPGDTPEARARNRR 335
PRK09038 PRK09038
flagellar motor protein MotD; Reviewed
 59-167 1.03e-05

flagellar motor protein MotD; Reviewed


Pssm-ID: 181618 [Multi-domain]  Cd Length: 281  Bit Score: 44.23  E-value: 1.03e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488139531  59 ELQKNNIVYFGFDKYDIGSDFAQMLDAHAAFLRSNPSDkVVVEGHADER--GTPEY--NIALGERRASAVKMYLQGKGVS 134
Cdd:PRK09038 128 EIEINSSLLFGSGDAMLSDQAFAILEKVAEVLKPAPNP-IHVEGFTDNVpiATAQFpsNWELSAARAASVVRLLADDGVA 206

                         90       100       110
                 ....*....|....*....|....*....|...
gi 488139531 135 ADQISIVSYGKEKPAVLGHDEAAFAKNRRAVLV 167
Cdd:PRK09038 207 PSRLAAVGYGEFQPVADNDTAEGRARNRRVVLV 239
PRK06925 PRK06925
flagellar motor protein MotB;
83-167 1.10e-05

flagellar motor protein MotB;


Pssm-ID: 235887 [Multi-domain]  Cd Length: 230  Bit Score: 43.98  E-value: 1.10e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488139531  83 LDAHAAFLRSNPSDkVVVEGHADERGTPEY----NIALGERRASAVKMYLQGK-GVSADQISIVSYGKEKPAVLGHDEAA 157
Cdd:PRK06925 137 LHKIGVLLSTIPND-IKVEGHTDSRPISTYrypsNWELSAARASSVIRYFTSKeKLDSSRFIAVGYADTKPVVPNTTEEN 215

                         90
                 ....*....|
gi 488139531 158 FAKNRRAVLV 167
Cdd:PRK06925 216 MQENRRVEIV 225
PRK09967 PRK09967
OmpA family protein;
66-167 6.58e-05

OmpA family protein;


Pssm-ID: 182172 [Multi-domain]  Cd Length: 160  Bit Score: 41.12  E-value: 6.58e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488139531  66 VYFGFDKYDIGSDFAQMLDAHAAFLRSNPSDKVVVEGHADERGTPEYNIALGERRASAV-KMYLQGKGVSADQISIVSYG 144
Cdd:PRK09967  54 ILFAKNDYKLLPESQQQIQTMAAKLASTGLTHARMDGHTDNYGEDSYNEGLSLKRANVVaDAWAMGGQIPRSNLTTQGLG 133

                         90       100
                 ....*....|....*....|...
gi 488139531 145 KEKPAVLGHDEAAFAKNRRAVLV 167
Cdd:PRK09967 134 KKYPIASNKTAQGRAENRRVAVV 156
motB PRK08457
flagellar motor protein MotB; Reviewed
 23-165 9.08e-05

flagellar motor protein MotB; Reviewed


Pssm-ID: 181435 [Multi-domain]  Cd Length: 257  Bit Score: 41.24  E-value: 9.08e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488139531  23 SSNKSANNDQSGMGAG------TGTENGSNLSSEEQARLQMQE---LQKNNIVYFGFDKYDI-GSDFAQMLDAHAAFLRS 92
Cdd:PRK08457  72 PPDSGDAEEEMDELKSlkasqnTQQETIERRKGEGGALDQIDNgiaLKLPSKLLFENGSAEIiNADMMDYLKRIAKIITK 151

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 488139531  93 NPSD-KVVVEGHAD--ERGTPEY--NIALGERRASAVKMYLQGKGVSADQISIVSYGKEKPAVLGHDEAAFAKNRRAV 165
Cdd:PRK08457 152 LPKQvKINVRGYTDnsPLNKSRYkdHYELAAARAYNVMKVLIQYGINPNRLSFSSYGSNNPIAPNDSLENRLKNNRVE 229
PRK06742 PRK06742
flagellar motor protein MotS; Reviewed
 70-166 1.98e-03

flagellar motor protein MotS; Reviewed


Pssm-ID: 102525 [Multi-domain]  Cd Length: 225  Bit Score: 37.35  E-value: 1.98e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488139531  70 FDKYD--IGSDFAQMLDAHAAFLRSNPsDKVVVEGHADERgtPEYNIAL-------GERRASAVKMYLQGKGVSADQISI 140
Cdd:PRK06742 119 FDTGDanVKPEAKEIISQLVGFFQSVP-NPIVVEGHTDSR--PIHNDKFpsnwelsSARAANMIHHLIEVYNVDDKRLAA 195

                         90       100
                 ....*....|....*....|....*.
gi 488139531 141 VSYGKEKPAVLGHDEAAFAKNRRAVL 166
Cdd:PRK06742 196 VGYADTKPVVPNDSPQNWEKNRRVVI 221
motB PRK08944
flagellar motor protein MotB; Reviewed
 76-163 2.30e-03

flagellar motor protein MotB; Reviewed


Pssm-ID: 236356 [Multi-domain]  Cd Length: 302  Bit Score: 37.30  E-value: 2.30e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488139531  76 GSDFAQ-----MLDAHAAFLRSNPSdKVVVEGHADERGTP--EY--NIALGERRASAVKMYL-QGKGVSADQISIVSYGK 145
Cdd:PRK08944 186 GSAFLQpkfkpVVRKIGELLKDVPG-IITVSGHTDNVPISseLYrsNWDLSSARAVAVAHELlKVKGFDPQRLKVVGMAD 264

                         90
                 ....*....|....*...
gi 488139531 146 EKPAVLGHDEAAFAKNRR 163
Cdd:PRK08944 265 TQPLVPNDTAENRARNRR 282
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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