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Conserved domains on  [gi|488141740|ref|WP_002212948|]
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MULTISPECIES: SctQ family type III secretion system cytoplasmic ring protein YscQ [Yersinia pseudotuberculosis complex]

Protein Classification

flagellar motor switch protein FliN( domain architecture ID 11482501)

flagellar motor switch protein FliN is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK06933 PRK06933
YscQ/HrcQ family type III secretion apparatus protein;
1-307 8.99e-168

YscQ/HrcQ family type III secretion apparatus protein;


:

Pssm-ID: 235891 [Multi-domain]  Cd Length: 308  Bit Score: 467.68  E-value: 8.99e-168
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488141740   1 MSLLTLPQAKLSELSLRQRLSHYQQNYLWEEGKLELTVSEPPSSLNCILQLQWKGTHFTLYCFGNDLANWLTADLLGAPF 80
Cdd:PRK06933   1 MSLLTLPKASLSELSLRQRLSHYQQHFLWEEGKLSLTVSQPPSSLDCILQLQWKGQTFTLYCFGADLANWLAPDLQGAAF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488141740  81 FTLPKELQLALLERQTVFLPKLVCNDIATASLSVTQPLLSLRLSRDNAHISFWLTSAEALFALLPARPNSERIPLPILIS 160
Cdd:PRK06933  81 FSLPKELQLALLERQTVFLPKLVCNDLATASLSVTQPLLSLRLSRDNASLSLWLTSPEALLALLPPRPSSERLPIPLLLS 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488141740 161 LRWHKVYLTLDEVDSLRLGDVLLAPEGSGPNSPVLAYVGENPWGYFQLQSNKLEFIGMSHESDELNPEPL-TDLNQLPVQ 239
Cdd:PRK06933 161 LQWGKVYLTLDEFDSLELGDVLLAPEGSGPNSPVLAYVEGRPWAYCQLQSNKLELIGMHTESNDLNPEPLlTDLNQLPVQ 240

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 488141740 240 VSFEVGRQILDWHTLTSLEPGSLIDLTTPVDGEVRLLANGRLLGHGRLVEIQGRLGVRIERLTEVTIS 307
Cdd:PRK06933 241 VSFEVGRQTLDLHTLTSLQPGSLIDLTTPVDGEVRLLANGRLLGHGRLVEIQGRLGVRVERLFGVTQS 308
 
Name Accession Description Interval E-value
PRK06933 PRK06933
YscQ/HrcQ family type III secretion apparatus protein;
1-307 8.99e-168

YscQ/HrcQ family type III secretion apparatus protein;


Pssm-ID: 235891 [Multi-domain]  Cd Length: 308  Bit Score: 467.68  E-value: 8.99e-168
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488141740   1 MSLLTLPQAKLSELSLRQRLSHYQQNYLWEEGKLELTVSEPPSSLNCILQLQWKGTHFTLYCFGNDLANWLTADLLGAPF 80
Cdd:PRK06933   1 MSLLTLPKASLSELSLRQRLSHYQQHFLWEEGKLSLTVSQPPSSLDCILQLQWKGQTFTLYCFGADLANWLAPDLQGAAF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488141740  81 FTLPKELQLALLERQTVFLPKLVCNDIATASLSVTQPLLSLRLSRDNAHISFWLTSAEALFALLPARPNSERIPLPILIS 160
Cdd:PRK06933  81 FSLPKELQLALLERQTVFLPKLVCNDLATASLSVTQPLLSLRLSRDNASLSLWLTSPEALLALLPPRPSSERLPIPLLLS 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488141740 161 LRWHKVYLTLDEVDSLRLGDVLLAPEGSGPNSPVLAYVGENPWGYFQLQSNKLEFIGMSHESDELNPEPL-TDLNQLPVQ 239
Cdd:PRK06933 161 LQWGKVYLTLDEFDSLELGDVLLAPEGSGPNSPVLAYVEGRPWAYCQLQSNKLELIGMHTESNDLNPEPLlTDLNQLPVQ 240

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 488141740 240 VSFEVGRQILDWHTLTSLEPGSLIDLTTPVDGEVRLLANGRLLGHGRLVEIQGRLGVRIERLTEVTIS 307
Cdd:PRK06933 241 VSFEVGRQTLDLHTLTSLQPGSLIDLTTPVDGEVRLLANGRLLGHGRLVEIQGRLGVRVERLFGVTQS 308
SpaO_YscQ TIGR02551
type III secretion system apparatus protein YscQ/HrcQ; Genes in this family are found in type ...
 37-301 1.22e-64

type III secretion system apparatus protein YscQ/HrcQ; Genes in this family are found in type III secretion operons. The gene (YscQ) in Yersinia is essential for YOPs secretion, while SpaO in Shigella is involved in the Surface Presentation of Antigens apparatus found on the virulence plasmid, and HrcQ is involved in the Harpin secretory system in organisms like Pseudomonas syringae. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]


Pssm-ID: 274196 [Multi-domain]  Cd Length: 298  Bit Score: 205.34  E-value: 1.22e-64
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488141740   37 TVSEPPSSLNCILQLQWKGTHFTLYCFGNDLANWLTADLLGAPFFTLPKELQ----LALLERQTVFLPKLVCNDIATASL 112
Cdd:TIGR02551   1 ALAELPVSSGVWLALALAGQTLSLWLRGAELQLWLAPALATAAFASLPLELLlallLAALAPAGLLLTELVALGESPASL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488141740  113 SVTQPL-----LSLRLSRDN--------AHISFWLTSAEA-LFALLPARPNSERIPLPILISLRWHKVYLTLDEVDSLRL 178
Cdd:TIGR02551  81 PAPQLSplalrLGLTLEGLDgpepvlllATLALWLTWVAAaLLAALPARPTVLLKALPLPVRLEIGSSRLALDELRSLEV 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488141740  179 GDVLLAPEGSGPNSPVLAYV-GENPWGYFQLQSNKLEFIG--------MSHESDEL------NPEPLTDLNQLPVQVSFE 243
Cdd:TIGR02551 161 GDVLLLDNPSAARAGLGALLlWGPPWARVLLADDRLELIDgitadnldLSDLTDTEspdepaAPTPEVDLDQLPVTLEFE 240

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 488141740  244 VGRQILDWHTLTSLEPGSLIDLTTPVDGEVRLLANGRLLGHGRLVEIQGRLGVRIERL 301
Cdd:TIGR02551 241 LGRLTLTLAELAALQPGSVLELNVPVDGPVRLRANGRLLGRGELVDVGGRLGVRILEL 298
FliN COG1886
Flagellar motor switch/type III secretory pathway protein FliN [Cell motility, Intracellular ...
 136-301 2.49e-20

Flagellar motor switch/type III secretory pathway protein FliN [Cell motility, Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 441490 [Multi-domain]  Cd Length: 172  Bit Score: 86.21  E-value: 2.49e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488141740 136 SAEALFALLPARPNSERIPLPILISLRWHKVYLTLDEVDSLRLGDVLLAPEGSGPNSPVLAYVGENPWGYFQLQS--NKL 213
Cdd:COG1886    2 ALAALLLALLLALAALALLLALALALPVLLAALLALLLALLLLAPLLLLAAAGAALLLGLLDLLLEVGGLLLLGSdeEPA 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488141740 214 EFIGMSHESDELN-PEPLTDLNQLPVQVSFEVGRQILDWHTLTSLEPGSLIDLTTPVDGEVRLLANGRLLGHGRLVEIQG 292
Cdd:COG1886   82 EFEPLEDAPEAEEePENLDLLLDVPVEVTVELGRTRLTLRELLKLGPGSVIELDRLAGEPVDILVNGRLIARGEVVVVDD 161


                 ....*....
gi 488141740 293 RLGVRIERL 301
Cdd:COG1886  162 RFGVRITEI 170
FliMN_C pfam01052
Type III flagellar switch regulator (C-ring) FliN C-term; This family includes the C-terminal ...
 238-303 4.23e-14

Type III flagellar switch regulator (C-ring) FliN C-term; This family includes the C-terminal region of flagellar motor switch proteins FliN and FliM. It is associated with family FliM, pfam02154 and family FliN_N pfam16973.


Pssm-ID: 460043 [Multi-domain]  Cd Length: 66  Bit Score: 65.82  E-value: 4.23e-14
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 488141740  238 VQVSFEVGRQILDWHTLTSLEPGSLIDLTTPVDGEVRLLANGRLLGHGRLVEIQGRLGVRIERLTE 303
Cdd:pfam01052   1 VELSAELGRTTLTLRELLNLKVGDVIPLDKPADEPVDVLVNGKPKFRGELGVVGGNLAVRITEIID 66
 
Name Accession Description Interval E-value
PRK06933 PRK06933
YscQ/HrcQ family type III secretion apparatus protein;
1-307 8.99e-168

YscQ/HrcQ family type III secretion apparatus protein;


Pssm-ID: 235891 [Multi-domain]  Cd Length: 308  Bit Score: 467.68  E-value: 8.99e-168
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488141740   1 MSLLTLPQAKLSELSLRQRLSHYQQNYLWEEGKLELTVSEPPSSLNCILQLQWKGTHFTLYCFGNDLANWLTADLLGAPF 80
Cdd:PRK06933   1 MSLLTLPKASLSELSLRQRLSHYQQHFLWEEGKLSLTVSQPPSSLDCILQLQWKGQTFTLYCFGADLANWLAPDLQGAAF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488141740  81 FTLPKELQLALLERQTVFLPKLVCNDIATASLSVTQPLLSLRLSRDNAHISFWLTSAEALFALLPARPNSERIPLPILIS 160
Cdd:PRK06933  81 FSLPKELQLALLERQTVFLPKLVCNDLATASLSVTQPLLSLRLSRDNASLSLWLTSPEALLALLPPRPSSERLPIPLLLS 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488141740 161 LRWHKVYLTLDEVDSLRLGDVLLAPEGSGPNSPVLAYVGENPWGYFQLQSNKLEFIGMSHESDELNPEPL-TDLNQLPVQ 239
Cdd:PRK06933 161 LQWGKVYLTLDEFDSLELGDVLLAPEGSGPNSPVLAYVEGRPWAYCQLQSNKLELIGMHTESNDLNPEPLlTDLNQLPVQ 240

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 488141740 240 VSFEVGRQILDWHTLTSLEPGSLIDLTTPVDGEVRLLANGRLLGHGRLVEIQGRLGVRIERLTEVTIS 307
Cdd:PRK06933 241 VSFEVGRQTLDLHTLTSLQPGSLIDLTTPVDGEVRLLANGRLLGHGRLVEIQGRLGVRVERLFGVTQS 308
SpaO_YscQ TIGR02551
type III secretion system apparatus protein YscQ/HrcQ; Genes in this family are found in type ...
 37-301 1.22e-64

type III secretion system apparatus protein YscQ/HrcQ; Genes in this family are found in type III secretion operons. The gene (YscQ) in Yersinia is essential for YOPs secretion, while SpaO in Shigella is involved in the Surface Presentation of Antigens apparatus found on the virulence plasmid, and HrcQ is involved in the Harpin secretory system in organisms like Pseudomonas syringae. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]


Pssm-ID: 274196 [Multi-domain]  Cd Length: 298  Bit Score: 205.34  E-value: 1.22e-64
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488141740   37 TVSEPPSSLNCILQLQWKGTHFTLYCFGNDLANWLTADLLGAPFFTLPKELQ----LALLERQTVFLPKLVCNDIATASL 112
Cdd:TIGR02551   1 ALAELPVSSGVWLALALAGQTLSLWLRGAELQLWLAPALATAAFASLPLELLlallLAALAPAGLLLTELVALGESPASL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488141740  113 SVTQPL-----LSLRLSRDN--------AHISFWLTSAEA-LFALLPARPNSERIPLPILISLRWHKVYLTLDEVDSLRL 178
Cdd:TIGR02551  81 PAPQLSplalrLGLTLEGLDgpepvlllATLALWLTWVAAaLLAALPARPTVLLKALPLPVRLEIGSSRLALDELRSLEV 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488141740  179 GDVLLAPEGSGPNSPVLAYV-GENPWGYFQLQSNKLEFIG--------MSHESDEL------NPEPLTDLNQLPVQVSFE 243
Cdd:TIGR02551 161 GDVLLLDNPSAARAGLGALLlWGPPWARVLLADDRLELIDgitadnldLSDLTDTEspdepaAPTPEVDLDQLPVTLEFE 240

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 488141740  244 VGRQILDWHTLTSLEPGSLIDLTTPVDGEVRLLANGRLLGHGRLVEIQGRLGVRIERL 301
Cdd:TIGR02551 241 LGRLTLTLAELAALQPGSVLELNVPVDGPVRLRANGRLLGRGELVDVGGRLGVRILEL 298
FliN COG1886
Flagellar motor switch/type III secretory pathway protein FliN [Cell motility, Intracellular ...
 136-301 2.49e-20

Flagellar motor switch/type III secretory pathway protein FliN [Cell motility, Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 441490 [Multi-domain]  Cd Length: 172  Bit Score: 86.21  E-value: 2.49e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488141740 136 SAEALFALLPARPNSERIPLPILISLRWHKVYLTLDEVDSLRLGDVLLAPEGSGPNSPVLAYVGENPWGYFQLQS--NKL 213
Cdd:COG1886    2 ALAALLLALLLALAALALLLALALALPVLLAALLALLLALLLLAPLLLLAAAGAALLLGLLDLLLEVGGLLLLGSdeEPA 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488141740 214 EFIGMSHESDELN-PEPLTDLNQLPVQVSFEVGRQILDWHTLTSLEPGSLIDLTTPVDGEVRLLANGRLLGHGRLVEIQG 292
Cdd:COG1886   82 EFEPLEDAPEAEEePENLDLLLDVPVEVTVELGRTRLTLRELLKLGPGSVIELDRLAGEPVDILVNGRLIARGEVVVVDD 161


                 ....*....
gi 488141740 293 RLGVRIERL 301
Cdd:COG1886  162 RFGVRITEI 170
FliMN_C pfam01052
Type III flagellar switch regulator (C-ring) FliN C-term; This family includes the C-terminal ...
 238-303 4.23e-14

Type III flagellar switch regulator (C-ring) FliN C-term; This family includes the C-terminal region of flagellar motor switch proteins FliN and FliM. It is associated with family FliM, pfam02154 and family FliN_N pfam16973.


Pssm-ID: 460043 [Multi-domain]  Cd Length: 66  Bit Score: 65.82  E-value: 4.23e-14
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 488141740  238 VQVSFEVGRQILDWHTLTSLEPGSLIDLTTPVDGEVRLLANGRLLGHGRLVEIQGRLGVRIERLTE 303
Cdd:pfam01052   1 VELSAELGRTTLTLRELLNLKVGDVIPLDKPADEPVDVLVNGKPKFRGELGVVGGNLAVRITEIID 66
PRK08158 PRK08158
YscQ/HrcQ family type III secretion apparatus protein;
101-298 8.24e-14

YscQ/HrcQ family type III secretion apparatus protein;


Pssm-ID: 181259 [Multi-domain]  Cd Length: 303  Bit Score: 70.67  E-value: 8.24e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488141740 101 KLVCNDIATASLSVTQPLLSLRLSRDNahisFWLTSAEALFALLPARPNSERIPLPILISLRWHKVYLTLDevdsLRLGD 180
Cdd:PRK08158 102 RLCVGNPVPGSALPEGPLLRIMTDRGG----LWFENAPELPAVGGGRPKMLRWPLRFVIGSSDTQRSLLGR----IGIGD 173

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488141740 181 VLLAPegsgpNSPVLAYVGENPWGYFQLQSNKL--EFIGMSHESDELNPE----PLTDLNQLPVQVSFEVGRQILDWHTL 254
Cdd:PRK08158 174 VLLIS-----TSRAEVYCYAKKIGHFNRVEEGIivETLDIQHIEEENNTTetaeTLPGLNQLPVKLEFVLYRKNVTLAEL 248

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....
gi 488141740 255 TSLEPGSLIDLTTPVDGEVRLLANGRLLGHGRLVEIQGRLGVRI 298
Cdd:PRK08158 249 EELCQQQLLSLPTNAELNVEIRANGALLGNGELVQMDDTLGVEI 292
fliN TIGR02480
flagellar motor switch protein FliN; Proteins that consist largely of the domain described by ...
 237-298 3.54e-08

flagellar motor switch protein FliN; Proteins that consist largely of the domain described by this model for this protein family can be designated flagellar motor switch protein FliN. Longer proteins in which this region is a C-terminal domain typically are designated FliY. More distantly related sequences, outside the scope of this family, are associated with type III secretion and include the surface presentation of antigens protein SpaO required or invasion of host cells by Salmonella enterica. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 131533 [Multi-domain]  Cd Length: 77  Bit Score: 49.90  E-value: 3.54e-08
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 488141740  237 PVQVSFEVGRQILDWHTLTSLEPGSLIDLTTPVDGEVRLLANGRLLGHGRLVEIQGRLGVRI 298
Cdd:TIGR02480   9 PVELTVELGRTRITLGDLLKLGEGSVIELDKLAGEPLDILVNGRLIARGEVVVVEDKFGIRI 70
FliM COG1868
Flagellar motor switch protein FliM [Cell motility];
233-303 9.02e-07

Flagellar motor switch protein FliM [Cell motility];


Pssm-ID: 441473 [Multi-domain]  Cd Length: 326  Bit Score: 49.77  E-value: 9.02e-07
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 488141740 233 LNQLPVQVSFEVGRQILDWHTLTSLEPGSLIDLTTPVDGEVRLLANGRLLGHGRLVEIQGRLGVRIERLTE 303
Cdd:COG1868  252 LEEAEVELSAELGETEITLRELLNLKVGDVIPLDKKVDDPLTVYVGGVPKFEGKPGVSNGRLAVKITEIIE 322
PRK08035 PRK08035
YscQ/HrcQ family type III secretion apparatus protein;
233-300 1.31e-06

YscQ/HrcQ family type III secretion apparatus protein;


Pssm-ID: 181204 [Multi-domain]  Cd Length: 323  Bit Score: 49.04  E-value: 1.31e-06
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 488141740 233 LNQLPVQVSFEVGRQILDWHTLTSLEPGSLIDLTTPVDGEVRLLANGRLLGHGRLVEIQGRLGVRIER 300
Cdd:PRK08035 248 LEQLPQQVVMEIGRLSLPIGQLRQLAVGDVLPVGGCFYPEVTIRLNGRIIGQGELLACDNELMVRITR 315
fliN PRK08983
flagellar motor switch protein FliN;
209-304 1.16e-05

flagellar motor switch protein FliN;


Pssm-ID: 236360 [Multi-domain]  Cd Length: 127  Bit Score: 43.97  E-value: 1.16e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488141740 209 QSNKLEFIGMSHESDELNPEPLTDLN---QLPVQVSFEVGRQILDWHTLTSLEPGSLIDLTTpVDGE-VRLLANGRLLGH 284
Cdd:PRK08983  21 EALAAELDELVDDSAPITEDEARKLDtilDIPVTISMEVGRSFISIRNLLQLNQGSVVELDR-VAGEpLDVMVNGTLIAH 99

                         90       100
                 ....*....|....*....|
gi 488141740 285 GRLVEIQGRLGVrieRLTEV 304
Cdd:PRK08983 100 GEVVVVNDKFGI---RLTDV 116
PRK08916 PRK08916
flagellar motor switch protein FliN;
228-304 1.25e-05

flagellar motor switch protein FliN;


Pssm-ID: 236350 [Multi-domain]  Cd Length: 116  Bit Score: 43.59  E-value: 1.25e-05
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 488141740 228 EPLTDLnqlPVQVSFEVGRQILDWHTLTSLEPGSLIDLTTPVDGEVRLLANGRLLGHGRLVEIQGRLGVrieRLTEV 304
Cdd:PRK08916  40 EAVFDV---PVQVSAVLGRSKMDVGQLLKLGPGSVLELDRKVGEAIDIYVNNRLVARGEVVLVEDRLGV---TMTEI 110
PRK06782 PRK06782
flagellar motor switch protein; Reviewed
 228-301 1.24e-04

flagellar motor switch protein; Reviewed


Pssm-ID: 235861 [Multi-domain]  Cd Length: 528  Bit Score: 43.29  E-value: 1.24e-04
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 488141740 228 EPLTDLNQL----PVQVSFEVGRQILDWHTLTSLEPGSLIDLTTPVDGEVRLLANGRLLGHGRLVEIQGRLGVRIERL 301
Cdd:PRK06782 450 EPVYMDTSIlqdvPMNVKVVFGSTKKTIQDILSLQENEVVVLDEDIDEPIRIYVNGVLVAYGELVNVDGFFGVKVTKS 527
fliN PRK05698
flagellar motor switch protein FliN;
236-304 1.33e-04

flagellar motor switch protein FliN;


Pssm-ID: 168189 [Multi-domain]  Cd Length: 155  Bit Score: 41.71  E-value: 1.33e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 488141740 236 LPVQVSFEVGRQILDWHTLTSLEPGSLIDLTTPVDGEVRLLANGRLLGHGRLVEIQGRLGVrieRLTEV 304
Cdd:PRK05698  79 IPVSISMEVGSTDINIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVVVNEKFGI---RLTDV 144
PRK08433 PRK08433
flagellar motor switch protein FliN;
234-298 6.15e-04

flagellar motor switch protein FliN;


Pssm-ID: 181423 [Multi-domain]  Cd Length: 111  Bit Score: 38.58  E-value: 6.15e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 488141740 234 NQLPVQVSF--EVGRQILDWHTLTSLEPGSLIDLTTPVDGEVRLLANGRLLGHGRLVEIQGRLGVRI 298
Cdd:PRK08433  28 NLLDIEVDFsaELGTTQISLLEILKFEKGSVIDLEKPAGESVELYINGRIIGKGEVMVYEKNLAIRI 94
PRK08119 PRK08119
flagellar motor switch protein; Validated
 237-302 8.74e-04

flagellar motor switch protein; Validated


Pssm-ID: 236154 [Multi-domain]  Cd Length: 382  Bit Score: 40.61  E-value: 8.74e-04
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 488141740 237 PVQVSFEVGR------QILdwhtltSLEPGSLIDLTTPVDGEVRLLANGRLLGHGRLVEIQGRLGVRI-------ERLT 302
Cdd:PRK08119 307 PLQVTVELGRtkksikDIL------ELGTGSIIELDKLAGEPVDILVNGKLIAKGEVVVIDENFGVRItdivsqsERIK 379
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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