|
Name |
Accession |
Description |
Interval |
E-value |
| DnaA |
TIGR00362 |
chromosomal replication initiator protein DnaA; DnaA is involved in DNA biosynthesis; ... |
8-442 |
0e+00 |
|
chromosomal replication initiator protein DnaA; DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273037 [Multi-domain] Cd Length: 437 Bit Score: 662.69 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488217152 8 WNELKATYQKDLSPASYNTWIETANPRTLDQNQLVVEVPSKIHKEYWEKNLATKIVEVGYMLSGNEIIPRFITGEEAEQE 87
Cdd:TIGR00362 1 WNRILERLEKELSEQEYNTWFKPLKLLSIEGNTLIISVPNEFVKEWIEKNYLDLIEELLQELFGAEIEIEFTVGEDEEEL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488217152 88 EV---IEEKNPKVVAPSPLKKAMLNPKYTFDTFVIGKGNQMAHAAALVVAEDPGSIYNPLFFYGGVGLGKTHLMHAIGHQ 164
Cdd:TIGR00362 81 EPnskKPEPAPPEAPAPPSSASGLNPKYTFDNFVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNE 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488217152 165 MLQSQPNAKVKYVSSETFANDFINSIQNKTAEEFRQEYRNVDLLLVDDIQFFAEKEATQEEFFHTFNALYNEGKQIVLTS 244
Cdd:TIGR00362 161 ILENNPNAKVLYVSSEKFTNDFVNALRNNKMEEFKEKYRSVDLLLIDDIQFLAGKERTQEEFFHTFNALHENNKQIVLTS 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488217152 245 DRLPNEIPKLQERLVSRFAWGLSVDITPPDLETRTAILRKKAAAERLEIPDDTLSYIAGQIDSNIRELEGALVRVQAFAA 324
Cdd:TIGR00362 241 DRPPKELPGLEDRLRSRFEWGLVVDIEPPDLETRLAILQKKAEEEGLELPDEVLEFIAKNITSNVRELEGALNRLLAYAS 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488217152 325 MNSEDISTSLAADALKTLKSGKgHPQLSILQIQEEVAKYYHIQLKDLKGKKRVKSIVVPRQIAMYLARELTDNSLPKIGA 404
Cdd:TIGR00362 321 LTGKPITLELAKEALKDLLRAQ-KKEITIENIQKVVAKYYNIKVSDLKSKKRTRNIVRPRQIAMYLAKELTDLSLPEIGK 399
|
410 420 430
....*....|....*....|....*....|....*...
gi 488217152 405 EFGGKDHTTVIHAHEKIQQLMDSSVSMQNEVSEIKNFL 442
Cdd:TIGR00362 400 AFGGRDHTTVLHAVRKIEKLIETDAELKEDIEELKRKL 437
|
|
| dnaA |
PRK00149 |
chromosomal replication initiator protein DnaA; |
3-444 |
0e+00 |
|
chromosomal replication initiator protein DnaA;
Pssm-ID: 234667 [Multi-domain] Cd Length: 401 Bit Score: 652.97 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488217152 3 SLDALWNELKATYQKDLSPASYNTWIETANPRTLDQNQLVVEVPSKIHKEYWEKNLATKIVEVgymlsgneiiprfitge 82
Cdd:PRK00149 1 NLQSLWEKVLERLKDELSEQEYETWIKPLKALSLEDNTLTLYVPNRFVKDWIEKNYLDLIEEA----------------- 63
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488217152 83 eaeqeevieeknpkvvapsplkkAMLNPKYTFDTFVIGKGNQMAHAAALVVAEDPGSIYNPLFFYGGVGLGKTHLMHAIG 162
Cdd:PRK00149 64 -----------------------LQLNPKYTFDNFVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIG 120
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488217152 163 HQMLQSQPNAKVKYVSSETFANDFINSIQNKTAEEFRQEYRNVDLLLVDDIQFFAEKEATQEEFFHTFNALYNEGKQIVL 242
Cdd:PRK00149 121 NYILEKNPNAKVVYVTSEKFTNDFVNALRNNTMEEFKEKYRSVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVL 200
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488217152 243 TSDRLPNEIPKLQERLVSRFAWGLSVDITPPDLETRTAILRKKAAAERLEIPDDTLSYIAGQIDSNIRELEGALVRVQAF 322
Cdd:PRK00149 201 TSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKKKAEEEGIDLPDEVLEFIAKNITSNVRELEGALNRLIAY 280
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488217152 323 AAMNSEDISTSLAADALKTLKSGKgHPQLSILQIQEEVAKYYHIQLKDLKGKKRVKSIVVPRQIAMYLARELTDNSLPKI 402
Cdd:PRK00149 281 ASLTGKPITLELAKEALKDLLAAQ-KKKITIENIQKVVAEYYNIKVSDLKSKSRTRNIARPRQIAMYLAKELTDLSLPEI 359
|
410 420 430 440
....*....|....*....|....*....|....*....|..
gi 488217152 403 GAEFGGKDHTTVIHAHEKIQQLMDSSVSMQNEVSEIKNFLLN 444
Cdd:PRK00149 360 GRAFGGRDHTTVLHAVRKIEKLLEEDPELKEDVEELKRKLKS 401
|
|
| DnaA |
COG0593 |
Chromosomal replication initiation ATPase DnaA [Replication, recombination and repair]; |
108-411 |
0e+00 |
|
Chromosomal replication initiation ATPase DnaA [Replication, recombination and repair];
Pssm-ID: 440358 [Multi-domain] Cd Length: 303 Bit Score: 526.68 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488217152 108 LNPKYTFDTFVIGKGNQMAHAAALVVAEDPGSIYNPLFFYGGVGLGKTHLMHAIGHQMLQSQPNAKVKYVSSETFANDFI 187
Cdd:COG0593 1 LNPRYTFDNFVVGPSNRLAHAAALAVAEWPGKAYNPLFLYGGVGLGKTHLLHAIGNEALENNPGARVVYLTAEEFTNDFI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488217152 188 NSIQNKTAEEFRQEYRNVDLLLVDDIQFFAEKEATQEEFFHTFNALYNEGKQIVLTSDRLPNEIPKLQERLVSRFAWGLS 267
Cdd:COG0593 81 NAIRNNTIEEFKEKYRSVDVLLIDDIQFLAGKEATQEEFFHTFNALREAGKQIVLTSDRPPKELPGLEERLRSRLEWGLV 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488217152 268 VDITPPDLETRTAILRKKAAAERLEIPDDTLSYIAGQIDSNIRELEGALVRVQAFAAMNSEDISTSLAADALKTLKSGKg 347
Cdd:COG0593 161 VDIQPPDLETRIAILRKKAADRGLELPDEVLEYLARRIERNVRELEGALNRLDAYALLTGRPITLELAREVLKDLLRAQ- 239
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 488217152 348 HPQLSILQIQEEVAKYYHIQLKDLKGKKRVKSIVVPRQIAMYLARELTDNSLPKIGAEFGGKDH 411
Cdd:COG0593 240 KKEITIEDIQKAVAEYFGVSVADLLSKSRTREIARPRQIAMYLARELTDLSLPEIGRAFGGRDH 303
|
|
| Bac_DnaA |
pfam00308 |
Bacterial dnaA protein; |
108-326 |
1.39e-124 |
|
Bacterial dnaA protein;
Pssm-ID: 278724 [Multi-domain] Cd Length: 219 Bit Score: 360.49 E-value: 1.39e-124
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488217152 108 LNPKYTFDTFVIGKGNQMAHAAALVVAEDPGSIYNPLFFYGGVGLGKTHLMHAIGHQMLQSQPNAKVKYVSSETFANDFI 187
Cdd:pfam00308 1 LNPRYTFENFVIGPSNRFAHAAALTVAKAPGKAYNPLFIYGGVGLGKTHLLHAIGNYALQNAPNLRVVYLTAEEFLNDFV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488217152 188 NSIQNKTAEEFRQEYRNVDLLLVDDIQFFAEKEATQEEFFHTFNALYNEGKQIVLTSDRLPNEIPKLQERLVSRFAWGLS 267
Cdd:pfam00308 81 DAIRDNKTNQFKEKYRNVDVLLIDDIQFLAGKEGTQEEFFHTFNALHESGKQIVFSSDRPPKELEELEDRLRSRFQWGLV 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 488217152 268 VDITPPDLETRTAILRKKAAAERLEIPDDTLSYIAGQIDSNIRELEGALVRVQAFAAMN 326
Cdd:pfam00308 161 TDIEPPDLETRLAILRKKAEAEGIEIPPEVLNFIAQRVTDNVRELEGALNRLLAYSSLN 219
|
|
| Bac_DnaA_C |
cd06571 |
C-terminal domain of bacterial DnaA proteins. The DNA-binding C-terminal domain of DnaA ... |
356-440 |
2.21e-39 |
|
C-terminal domain of bacterial DnaA proteins. The DNA-binding C-terminal domain of DnaA contains a helix-turn-helix motif that specifically interacts with the DnaA box, a 9-mer motif that occurs repetitively in the replication origin oriC. Multiple copies of DnaA, which is an ATPase, bind to 9-mers at the origin and form an initial complex in which the DNA strands are being separated in an ATP-dependent step.
Pssm-ID: 119330 [Multi-domain] Cd Length: 90 Bit Score: 136.49 E-value: 2.21e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488217152 356 IQEEVAKYYHIQLKDLKGKKRVKSIVVPRQIAMYLARELTDNSLPKIGAEFGGKDHTTVIHAHEKIQQLMDSSVSMQNEV 435
Cdd:cd06571 4 IIEAVAEYFGISVEDLRSKSRKKEIALARQIAMYLARELTGLSLPEIGRAFGGRDHSTVLHAVRKIEELLEEDPELKEDV 83
|
....*
gi 488217152 436 SEIKN 440
Cdd:cd06571 84 EELEK 88
|
|
| Bac_DnaA_C |
smart00760 |
Bacterial dnaA protein helix-turn-helix domain; Could be involved in DNA-binding. |
352-420 |
2.01e-34 |
|
Bacterial dnaA protein helix-turn-helix domain; Could be involved in DNA-binding.
Pssm-ID: 197863 [Multi-domain] Cd Length: 69 Bit Score: 122.62 E-value: 2.01e-34
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 488217152 352 SILQIQEEVAKYYHIQLKDLKGKKRVKSIVVPRQIAMYLARELTDNSLPKIGAEFGGKDHTTVIHAHEK 420
Cdd:smart00760 1 TIEEIIEAVAEYFGVKPEDLKSKSRKREIVLARQIAMYLARELTDLSLPEIGKIFGGRDHSTVLHACRK 69
|
|
| IS21_help_AAA |
NF038214 |
IS21-like element helper ATPase IstB; This protein family model resembles PF01695, but was ... |
146-244 |
3.58e-08 |
|
IS21-like element helper ATPase IstB; This protein family model resembles PF01695, but was built to hit full-length AAA+ ATPases of IS21 family IS (insertion sequence) elements.
Pssm-ID: 439516 Cd Length: 232 Bit Score: 54.01 E-value: 3.58e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488217152 146 FYGGVGLGKTHLMHAIGHQMLQSqpNAKVKYVSsetfANDFINS-----IQNKTAEEFRQeYRNVDLLLVDDIQF--FAE 218
Cdd:NF038214 95 LLGPPGTGKTHLAIALGYAACRQ--GYRVRFTT----AADLVEQlaqarADGRLGRLLRR-LARYDLLIIDELGYlpFSR 167
|
90 100
....*....|....*....|....*.
gi 488217152 219 KEAtqEEFFHTFNALYnEGKQIVLTS 244
Cdd:NF038214 168 EGA--NLLFELIADRY-ERGSTIITS 190
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| DnaA |
TIGR00362 |
chromosomal replication initiator protein DnaA; DnaA is involved in DNA biosynthesis; ... |
8-442 |
0e+00 |
|
chromosomal replication initiator protein DnaA; DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273037 [Multi-domain] Cd Length: 437 Bit Score: 662.69 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488217152 8 WNELKATYQKDLSPASYNTWIETANPRTLDQNQLVVEVPSKIHKEYWEKNLATKIVEVGYMLSGNEIIPRFITGEEAEQE 87
Cdd:TIGR00362 1 WNRILERLEKELSEQEYNTWFKPLKLLSIEGNTLIISVPNEFVKEWIEKNYLDLIEELLQELFGAEIEIEFTVGEDEEEL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488217152 88 EV---IEEKNPKVVAPSPLKKAMLNPKYTFDTFVIGKGNQMAHAAALVVAEDPGSIYNPLFFYGGVGLGKTHLMHAIGHQ 164
Cdd:TIGR00362 81 EPnskKPEPAPPEAPAPPSSASGLNPKYTFDNFVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNE 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488217152 165 MLQSQPNAKVKYVSSETFANDFINSIQNKTAEEFRQEYRNVDLLLVDDIQFFAEKEATQEEFFHTFNALYNEGKQIVLTS 244
Cdd:TIGR00362 161 ILENNPNAKVLYVSSEKFTNDFVNALRNNKMEEFKEKYRSVDLLLIDDIQFLAGKERTQEEFFHTFNALHENNKQIVLTS 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488217152 245 DRLPNEIPKLQERLVSRFAWGLSVDITPPDLETRTAILRKKAAAERLEIPDDTLSYIAGQIDSNIRELEGALVRVQAFAA 324
Cdd:TIGR00362 241 DRPPKELPGLEDRLRSRFEWGLVVDIEPPDLETRLAILQKKAEEEGLELPDEVLEFIAKNITSNVRELEGALNRLLAYAS 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488217152 325 MNSEDISTSLAADALKTLKSGKgHPQLSILQIQEEVAKYYHIQLKDLKGKKRVKSIVVPRQIAMYLARELTDNSLPKIGA 404
Cdd:TIGR00362 321 LTGKPITLELAKEALKDLLRAQ-KKEITIENIQKVVAKYYNIKVSDLKSKKRTRNIVRPRQIAMYLAKELTDLSLPEIGK 399
|
410 420 430
....*....|....*....|....*....|....*...
gi 488217152 405 EFGGKDHTTVIHAHEKIQQLMDSSVSMQNEVSEIKNFL 442
Cdd:TIGR00362 400 AFGGRDHTTVLHAVRKIEKLIETDAELKEDIEELKRKL 437
|
|
| dnaA |
PRK00149 |
chromosomal replication initiator protein DnaA; |
3-444 |
0e+00 |
|
chromosomal replication initiator protein DnaA;
Pssm-ID: 234667 [Multi-domain] Cd Length: 401 Bit Score: 652.97 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488217152 3 SLDALWNELKATYQKDLSPASYNTWIETANPRTLDQNQLVVEVPSKIHKEYWEKNLATKIVEVgymlsgneiiprfitge 82
Cdd:PRK00149 1 NLQSLWEKVLERLKDELSEQEYETWIKPLKALSLEDNTLTLYVPNRFVKDWIEKNYLDLIEEA----------------- 63
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488217152 83 eaeqeevieeknpkvvapsplkkAMLNPKYTFDTFVIGKGNQMAHAAALVVAEDPGSIYNPLFFYGGVGLGKTHLMHAIG 162
Cdd:PRK00149 64 -----------------------LQLNPKYTFDNFVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIG 120
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488217152 163 HQMLQSQPNAKVKYVSSETFANDFINSIQNKTAEEFRQEYRNVDLLLVDDIQFFAEKEATQEEFFHTFNALYNEGKQIVL 242
Cdd:PRK00149 121 NYILEKNPNAKVVYVTSEKFTNDFVNALRNNTMEEFKEKYRSVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVL 200
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488217152 243 TSDRLPNEIPKLQERLVSRFAWGLSVDITPPDLETRTAILRKKAAAERLEIPDDTLSYIAGQIDSNIRELEGALVRVQAF 322
Cdd:PRK00149 201 TSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKKKAEEEGIDLPDEVLEFIAKNITSNVRELEGALNRLIAY 280
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488217152 323 AAMNSEDISTSLAADALKTLKSGKgHPQLSILQIQEEVAKYYHIQLKDLKGKKRVKSIVVPRQIAMYLARELTDNSLPKI 402
Cdd:PRK00149 281 ASLTGKPITLELAKEALKDLLAAQ-KKKITIENIQKVVAEYYNIKVSDLKSKSRTRNIARPRQIAMYLAKELTDLSLPEI 359
|
410 420 430 440
....*....|....*....|....*....|....*....|..
gi 488217152 403 GAEFGGKDHTTVIHAHEKIQQLMDSSVSMQNEVSEIKNFLLN 444
Cdd:PRK00149 360 GRAFGGRDHTTVLHAVRKIEKLLEEDPELKEDVEELKRKLKS 401
|
|
| DnaA |
COG0593 |
Chromosomal replication initiation ATPase DnaA [Replication, recombination and repair]; |
108-411 |
0e+00 |
|
Chromosomal replication initiation ATPase DnaA [Replication, recombination and repair];
Pssm-ID: 440358 [Multi-domain] Cd Length: 303 Bit Score: 526.68 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488217152 108 LNPKYTFDTFVIGKGNQMAHAAALVVAEDPGSIYNPLFFYGGVGLGKTHLMHAIGHQMLQSQPNAKVKYVSSETFANDFI 187
Cdd:COG0593 1 LNPRYTFDNFVVGPSNRLAHAAALAVAEWPGKAYNPLFLYGGVGLGKTHLLHAIGNEALENNPGARVVYLTAEEFTNDFI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488217152 188 NSIQNKTAEEFRQEYRNVDLLLVDDIQFFAEKEATQEEFFHTFNALYNEGKQIVLTSDRLPNEIPKLQERLVSRFAWGLS 267
Cdd:COG0593 81 NAIRNNTIEEFKEKYRSVDVLLIDDIQFLAGKEATQEEFFHTFNALREAGKQIVLTSDRPPKELPGLEERLRSRLEWGLV 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488217152 268 VDITPPDLETRTAILRKKAAAERLEIPDDTLSYIAGQIDSNIRELEGALVRVQAFAAMNSEDISTSLAADALKTLKSGKg 347
Cdd:COG0593 161 VDIQPPDLETRIAILRKKAADRGLELPDEVLEYLARRIERNVRELEGALNRLDAYALLTGRPITLELAREVLKDLLRAQ- 239
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 488217152 348 HPQLSILQIQEEVAKYYHIQLKDLKGKKRVKSIVVPRQIAMYLARELTDNSLPKIGAEFGGKDH 411
Cdd:COG0593 240 KKEITIEDIQKAVAEYFGVSVADLLSKSRTREIARPRQIAMYLARELTDLSLPEIGRAFGGRDH 303
|
|
| dnaA |
PRK14086 |
chromosomal replication initiator protein DnaA; |
93-440 |
1.51e-156 |
|
chromosomal replication initiator protein DnaA;
Pssm-ID: 237605 [Multi-domain] Cd Length: 617 Bit Score: 456.59 E-value: 1.51e-156
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488217152 93 KNPKVVAPSPLKKAMLNPKYTFDTFVIGKGNQMAHAAALVVAEDPGSIYNPLFFYGGVGLGKTHLMHAIGHQMLQSQPNA 172
Cdd:PRK14086 266 AQPAPAPGPGEPTARLNPKYTFDTFVIGASNRFAHAAAVAVAEAPAKAYNPLFIYGESGLGKTHLLHAIGHYARRLYPGT 345
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488217152 173 KVKYVSSETFANDFINSIQNKTAEEFRQEYRNVDLLLVDDIQFFAEKEATQEEFFHTFNALYNEGKQIVLTSDRLPNEIP 252
Cdd:PRK14086 346 RVRYVSSEEFTNEFINSIRDGKGDSFRRRYREMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLV 425
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488217152 253 KLQERLVSRFAWGLSVDITPPDLETRTAILRKKAAAERLEIPDDTLSYIAGQIDSNIRELEGALVRVQAFAAMNSEDIST 332
Cdd:PRK14086 426 TLEDRLRNRFEWGLITDVQPPELETRIAILRKKAVQEQLNAPPEVLEFIASRISRNIRELEGALIRVTAFASLNRQPVDL 505
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488217152 333 SLAADALKTLKSGKGHPQLSILQIQEEVAKYYHIQLKDLKGKKRVKSIVVPRQIAMYLARELTDNSLPKIGAEFgGKDHT 412
Cdd:PRK14086 506 GLTEIVLRDLIPEDSAPEITAAAIMAATADYFGLTVEDLCGTSRSRVLVTARQIAMYLCRELTDLSLPKIGQQF-GRDHT 584
|
330 340
....*....|....*....|....*...
gi 488217152 413 TVIHAHEKIQQLMDSSVSMQNEVSEIKN 440
Cdd:PRK14086 585 TVMHADRKIRALMAERRSIYNQVTELTN 612
|
|
| Bac_DnaA |
pfam00308 |
Bacterial dnaA protein; |
108-326 |
1.39e-124 |
|
Bacterial dnaA protein;
Pssm-ID: 278724 [Multi-domain] Cd Length: 219 Bit Score: 360.49 E-value: 1.39e-124
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488217152 108 LNPKYTFDTFVIGKGNQMAHAAALVVAEDPGSIYNPLFFYGGVGLGKTHLMHAIGHQMLQSQPNAKVKYVSSETFANDFI 187
Cdd:pfam00308 1 LNPRYTFENFVIGPSNRFAHAAALTVAKAPGKAYNPLFIYGGVGLGKTHLLHAIGNYALQNAPNLRVVYLTAEEFLNDFV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488217152 188 NSIQNKTAEEFRQEYRNVDLLLVDDIQFFAEKEATQEEFFHTFNALYNEGKQIVLTSDRLPNEIPKLQERLVSRFAWGLS 267
Cdd:pfam00308 81 DAIRDNKTNQFKEKYRNVDVLLIDDIQFLAGKEGTQEEFFHTFNALHESGKQIVFSSDRPPKELEELEDRLRSRFQWGLV 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 488217152 268 VDITPPDLETRTAILRKKAAAERLEIPDDTLSYIAGQIDSNIRELEGALVRVQAFAAMN 326
Cdd:pfam00308 161 TDIEPPDLETRLAILRKKAEAEGIEIPPEVLNFIAQRVTDNVRELEGALNRLLAYSSLN 219
|
|
| PRK12422 |
PRK12422 |
chromosomal replication initiator protein DnaA; |
8-426 |
1.46e-71 |
|
chromosomal replication initiator protein DnaA;
Pssm-ID: 183521 [Multi-domain] Cd Length: 445 Bit Score: 232.42 E-value: 1.46e-71
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488217152 8 WNELKATYQKDLSPASYNTWIETANPRTLDQNQLVVEVPSKIHKEYWEKNLATKiVEVGYMLSGNEIIPRFIT--GEEAE 85
Cdd:PRK12422 4 WEEFLLLQEKEIGTETVDKWLRSLKVLCFDACNLYLEAKDSFQVTWFEEHIRHK-VKASLVNNNGKPIRVHVTslDKSTP 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488217152 86 QEEVIEEKNPKVvAPSPLKKAMLNPKYTFDTFVIGKGNQMAHAAALVVAEDP----GSIYNPLFFYGGVGLGKTHLMHAI 161
Cdd:PRK12422 83 FKKEKQIQQEKT-AYFTMKYGELDPLMTFANFLVTPENDLPHRILQEFTKVSeqgkGFPFNPIYLFGPEGSGKTHLMQAA 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488217152 162 GHQMLQSqpNAKVKYVSSETFANDFINSIQNKTAEEFRQEYRNVDLLLVDDIQFFAEKEATQEEFFHTFNALYNEGKQIV 241
Cdd:PRK12422 162 VHALRES--GGKILYVRSELFTEHLVSAIRSGEMQRFRQFYRNVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIV 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488217152 242 LTSDRLPNEIPKLQERLVSRFAWGLSVDITPPDLETRTAILRKKAAAERLEIPDDTLSYIAGQIDSNIRELEGA---LVR 318
Cdd:PRK12422 240 ISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERKAEALSIRIEETALDFLIEALSSNVKSLLHAltlLAK 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488217152 319 VQAFAAMNSEDISTSLAADALKTLKSGKGHPQLSILQIQEEVAKYYHIQLKDLKGKKRVKSIVVPRQIAMYLARELTDNS 398
Cdd:PRK12422 320 RVAYKKLSHQLLYVDDIKALLHDVLEAAESVRLTPSKIIRAVAQYYGVSPESILGRSQSREYVLPRQVAMYLCRQKLSLS 399
|
410 420
....*....|....*....|....*...
gi 488217152 399 LPKIGAEFgGKDHTTVIHAHEKIQQLMD 426
Cdd:PRK12422 400 YVKIGDVF-SRDHSTVISSIRAISQKLE 426
|
|
| Bac_DnaA_C |
cd06571 |
C-terminal domain of bacterial DnaA proteins. The DNA-binding C-terminal domain of DnaA ... |
356-440 |
2.21e-39 |
|
C-terminal domain of bacterial DnaA proteins. The DNA-binding C-terminal domain of DnaA contains a helix-turn-helix motif that specifically interacts with the DnaA box, a 9-mer motif that occurs repetitively in the replication origin oriC. Multiple copies of DnaA, which is an ATPase, bind to 9-mers at the origin and form an initial complex in which the DNA strands are being separated in an ATP-dependent step.
Pssm-ID: 119330 [Multi-domain] Cd Length: 90 Bit Score: 136.49 E-value: 2.21e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488217152 356 IQEEVAKYYHIQLKDLKGKKRVKSIVVPRQIAMYLARELTDNSLPKIGAEFGGKDHTTVIHAHEKIQQLMDSSVSMQNEV 435
Cdd:cd06571 4 IIEAVAEYFGISVEDLRSKSRKKEIALARQIAMYLARELTGLSLPEIGRAFGGRDHSTVLHAVRKIEELLEEDPELKEDV 83
|
....*
gi 488217152 436 SEIKN 440
Cdd:cd06571 84 EELEK 88
|
|
| Bac_DnaA_C |
pfam08299 |
Bacterial dnaA protein helix-turn-helix; |
355-421 |
4.56e-37 |
|
Bacterial dnaA protein helix-turn-helix;
Pssm-ID: 462419 [Multi-domain] Cd Length: 69 Bit Score: 129.83 E-value: 4.56e-37
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 488217152 355 QIQEEVAKYYHIQLKDLKGKKRVKSIVVPRQIAMYLARELTDNSLPKIGAEFGGKDHTTVIHAHEKI 421
Cdd:pfam08299 3 KIIEAVAEYFGISPEDLKSKSRKREIALARQIAMYLARELTDLSLPEIGRAFGGRDHSTVIHACKKI 69
|
|
| Bac_DnaA_C |
smart00760 |
Bacterial dnaA protein helix-turn-helix domain; Could be involved in DNA-binding. |
352-420 |
2.01e-34 |
|
Bacterial dnaA protein helix-turn-helix domain; Could be involved in DNA-binding.
Pssm-ID: 197863 [Multi-domain] Cd Length: 69 Bit Score: 122.62 E-value: 2.01e-34
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 488217152 352 SILQIQEEVAKYYHIQLKDLKGKKRVKSIVVPRQIAMYLARELTDNSLPKIGAEFGGKDHTTVIHAHEK 420
Cdd:smart00760 1 TIEEIIEAVAEYFGVKPEDLKSKSRKREIVLARQIAMYLARELTDLSLPEIGKIFGGRDHSTVLHACRK 69
|
|
| DnaA_homol_Hda |
TIGR03420 |
DnaA regulatory inactivator Hda; Members of this protein family are Hda (Homologous to DnaA). ... |
113-301 |
1.49e-25 |
|
DnaA regulatory inactivator Hda; Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP. [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 274571 [Multi-domain] Cd Length: 226 Bit Score: 103.81 E-value: 1.49e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488217152 113 TFDTFVIGkGNQ--MAHAAALVVAEDPGSIYnplfFYGGVGLGKTHLMHAIGHQMLQSQPNAkvKYVSSETFANDFINSI 190
Cdd:TIGR03420 13 TFDNFYAG-GNAelLAALRQLAAGKGDRFLY----LWGESGSGKSHLLQAACAAAEERGKSA--IYLPLAELAQADPEVL 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488217152 191 QNktAEEFrqeyrnvDLLLVDDIQFFAEKEATQEEFFHTFNALYNEGKQIVLTSDRLPNEIPKLQERLVSRFAWGLSVDI 270
Cdd:TIGR03420 86 EG--LEQA-------DLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWGLVFQL 156
|
170 180 190
....*....|....*....|....*....|.
gi 488217152 271 TPPDLETRTAILRKKAAAERLEIPDDTLSYI 301
Cdd:TIGR03420 157 PPLSDEEKIAALQSRAARRGLQLPDEVADYL 187
|
|
| AAA |
cd00009 |
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ... |
121-266 |
1.50e-17 |
|
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Pssm-ID: 99707 [Multi-domain] Cd Length: 151 Bit Score: 79.50 E-value: 1.50e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488217152 121 KGNQMAHAAALVVAEDPgsIYNPLFFYGGVGLGKTHLMHAIGHQMlqSQPNAKVKYVSSETFANDFINSIQ----NKTAE 196
Cdd:cd00009 1 VGQEEAIEALREALELP--PPKNLLLYGPPGTGKTTLARAIANEL--FRPGAPFLYLNASDLLEGLVVAELfghfLVRLL 76
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 488217152 197 EFRQEYRNVDLLLVDDIQFF-AEKEATQEEFFHTFN---ALYNEGKQIVLTSDRLPN-EIPKLQERLVSRFAWGL 266
Cdd:cd00009 77 FELAEKAKPGVLFIDEIDSLsRGAQNALLRVLETLNdlrIDRENVRVIGATNRPLLGdLDRALYDRLDIRIVIPL 151
|
|
| PRK08116 |
PRK08116 |
hypothetical protein; Validated |
111-293 |
8.50e-14 |
|
hypothetical protein; Validated
Pssm-ID: 236153 [Multi-domain] Cd Length: 268 Bit Score: 71.21 E-value: 8.50e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488217152 111 KYTFDTFVIGKGNQMAHAAALVVAEDPGSIYN---PLFFYGGVGLGKTHLMHAIGHQMLQSQpnAKVKYVSSETFANDfI 187
Cdd:PRK08116 81 NSTFENFLFDKGSEKAYKIARKYVKKFEEMKKenvGLLLWGSVGTGKTYLAACIANELIEKG--VPVIFVNFPQLLNR-I 157
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488217152 188 NSIQNKTAEEFRQEY----RNVDLLLVDDIQffAEK--EATQEEFFHTFNALYNEGKQIVLTSDRLPNEIP-KLQERLVS 260
Cdd:PRK08116 158 KSTYKSSGKEDENEIirslVNADLLILDDLG--AERdtEWAREKVYNIIDSRYRKGLPTIVTTNLSLEELKnQYGKRIYD 235
|
170 180 190
....*....|....*....|....*....|....
gi 488217152 261 R-FAWGLSVDITPPDletrtaiLRKKAAAERLEI 293
Cdd:PRK08116 236 RiLEMCTPVENEGKS-------YRKEIAKEKLQR 262
|
|
| PRK08084 |
PRK08084 |
DnaA inactivator Hda; |
113-312 |
1.43e-13 |
|
DnaA inactivator Hda;
Pssm-ID: 181224 [Multi-domain] Cd Length: 235 Bit Score: 70.09 E-value: 1.43e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488217152 113 TFDTFVIGkGNQMAHAAALVVAEDPGSIYnpLFFYGGVGLGKTHLMHAIGHQMlqSQPNAKVKYVSSETFAndfinSIQN 192
Cdd:PRK08084 20 TFASFYPG-DNDSLLAALQNALRQEHSGY--IYLWSREGAGRSHLLHAACAEL--SQRGRAVGYVPLDKRA-----WFVP 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488217152 193 KTAEEFRQeyrnVDLLLVDDIQFFAEKEATQEEFFHTFNALYNEGK-QIVLTSDRLPNEIPKLQERLVSRFAWGLSVDIT 271
Cdd:PRK08084 90 EVLEGMEQ----LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRtRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQ 165
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 488217152 272 PPDLETRTAILRKKAAAERLEIPDDTLSYIAGQIDSNIREL 312
Cdd:PRK08084 166 PLSDEEKLQALQLRARLRGFELPEDVGRFLLKRLDREMRTL 206
|
|
| PRK08903 |
PRK08903 |
DnaA regulatory inactivator Hda; Validated |
113-300 |
1.70e-13 |
|
DnaA regulatory inactivator Hda; Validated
Pssm-ID: 236347 [Multi-domain] Cd Length: 227 Bit Score: 69.62 E-value: 1.70e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488217152 113 TFDTFVIGkGNqmAHAAALVVAEDPGSIYNPLFF-YGGVGLGKTHLMHAIGHQMLQSQPNAKvkYVSS----ETFANDfi 187
Cdd:PRK08903 16 TFDNFVAG-EN--AELVARLRELAAGPVADRFFYlWGEAGSGRSHLLQALVADASYGGRNAR--YLDAasplLAFDFD-- 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488217152 188 nsiqnktaeefrqeyRNVDLLLVDDIQffAEKEATQEEFFHTFNALYNEGKQIVLTSDRLPNEIPKLQERLVSRFAWGLS 267
Cdd:PRK08903 89 ---------------PEAELYAVDDVE--RLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLV 151
|
170 180 190
....*....|....*....|....*....|...
gi 488217152 268 VDITPPDLETRTAILRKKAAAERLEIPDDTLSY 300
Cdd:PRK08903 152 YELKPLSDADKIAALKAAAAERGLQLADEVPDY 184
|
|
| DnaC |
COG1484 |
DNA replication protein DnaC [Replication, recombination and repair]; |
144-244 |
1.01e-12 |
|
DNA replication protein DnaC [Replication, recombination and repair];
Pssm-ID: 441093 [Multi-domain] Cd Length: 242 Bit Score: 67.50 E-value: 1.01e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488217152 144 LFFYGGVGLGKTHLMHAIGHQMLQSqpNAKVKYVSSETFANDFINSIQNKTAEEFRQEYRNVDLLLVDDIQFFAEKEATQ 223
Cdd:COG1484 102 LILLGPPGTGKTHLAIALGHEACRA--GYRVRFTTAPDLVNELKEARADGRLERLLKRLAKVDLLILDELGYLPLDAEGA 179
|
90 100
....*....|....*....|.
gi 488217152 224 EEFFHTFNALYnEGKQIVLTS 244
Cdd:COG1484 180 ELLFELISDRY-ERRSTIITS 199
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
142-261 |
1.66e-09 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 56.23 E-value: 1.66e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488217152 142 NPLFFYGGVGLGKTHLMHAIGHQMLqsQPNAKVKYVSSETFANDFINSIQNKT----------AEEFRQ-----EYRNVD 206
Cdd:smart00382 3 EVILIVGPPGSGKTTLARALARELG--PPGGGVIYIDGEDILEEVLDQLLLIIvggkkasgsgELRLRLalalaRKLKPD 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 488217152 207 LLLVDDIQFFAEKEATQEEFFH-----TFNALYNEGKQIVLTSDRLPNEIPKLQERLVSR 261
Cdd:smart00382 81 VLILDEITSLLDAEQEALLLLLeelrlLLLLKSEKNLTVILTTNDEKDLGPALLRRRFDR 140
|
|
| PRK06835 |
PRK06835 |
DNA replication protein DnaC; Validated |
144-261 |
2.24e-09 |
|
DNA replication protein DnaC; Validated
Pssm-ID: 235871 [Multi-domain] Cd Length: 329 Bit Score: 58.76 E-value: 2.24e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488217152 144 LFFYGGVGLGKTHLMHAIGHQMLQsqpNAK-VKYVSSETFANDfINSIQNKTAEEFRQEY---RNVDLLLVDDIQffAEK 219
Cdd:PRK06835 186 LLFYGNTGTGKTFLSNCIAKELLD---RGKsVIYRTADELIEI-LREIRFNNDKELEEVYdllINCDLLIIDDLG--TEK 259
|
90 100 110 120
....*....|....*....|....*....|....*....|....*
gi 488217152 220 --EATQEEFFHTFNALYNEGKQIVLTSDRLPNEIPKL-QERLVSR 261
Cdd:PRK06835 260 itEFSKSELFNLINKRLLRQKKMIISTNLSLEELLKTySERISSR 304
|
|
| IS21_help_AAA |
NF038214 |
IS21-like element helper ATPase IstB; This protein family model resembles PF01695, but was ... |
146-244 |
3.58e-08 |
|
IS21-like element helper ATPase IstB; This protein family model resembles PF01695, but was built to hit full-length AAA+ ATPases of IS21 family IS (insertion sequence) elements.
Pssm-ID: 439516 Cd Length: 232 Bit Score: 54.01 E-value: 3.58e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488217152 146 FYGGVGLGKTHLMHAIGHQMLQSqpNAKVKYVSsetfANDFINS-----IQNKTAEEFRQeYRNVDLLLVDDIQF--FAE 218
Cdd:NF038214 95 LLGPPGTGKTHLAIALGYAACRQ--GYRVRFTT----AADLVEQlaqarADGRLGRLLRR-LARYDLLIIDELGYlpFSR 167
|
90 100
....*....|....*....|....*.
gi 488217152 219 KEAtqEEFFHTFNALYnEGKQIVLTS 244
Cdd:NF038214 168 EGA--NLLFELIADRY-ERGSTIITS 190
|
|
| DnaA_N |
pfam11638 |
DnaA N-terminal domain; This family of proteins represents the N-terminal domain of DnaA, a ... |
5-62 |
4.72e-07 |
|
DnaA N-terminal domain; This family of proteins represents the N-terminal domain of DnaA, a protein involved in the initiation of bacterial chromosomal replication. The structure of this domain is known. It is also found in three copies in some proteins. The exact function of this domain is uncertain but it has been suggested to play a role in oligomerization.
Pssm-ID: 463316 [Multi-domain] Cd Length: 65 Bit Score: 46.89 E-value: 4.72e-07
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*....
gi 488217152 5 DALWNELKATYQKDLSPASYNTWIETANPRTLDQN-QLVVEVPSKIHKEYWEKNLATKI 62
Cdd:pfam11638 1 EELWERVLERLRKEVGEQTFNTWIKPLTLVDLDDGgSLTLSVPNRFVRDWVEEHYLDRI 59
|
|
| PRK12402 |
PRK12402 |
replication factor C small subunit 2; Reviewed |
185-341 |
4.16e-05 |
|
replication factor C small subunit 2; Reviewed
Pssm-ID: 237090 [Multi-domain] Cd Length: 337 Bit Score: 45.37 E-value: 4.16e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488217152 185 DFINSIQNKTAEefrqeYRNVD----LLLVDDiqffaeKEATQEEFFHtfnAL------YNEGKQIVLTSDRLPNEIPKL 254
Cdd:PRK12402 107 DNFKHVLKEYAS-----YRPLSadykTILLDN------AEALREDAQQ---ALrrimeqYSRTCRFIIATRQPSKLIPPI 172
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488217152 255 QERlvsrfawGLSVDITPPDLETRTAILRKKAAAERLEIPDDTLSYIAGQIDSNIRElegALVRVQaFAAMNSEDISTSL 334
Cdd:PRK12402 173 RSR-------CLPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLELIAYYAGGDLRK---AILTLQ-TAALAAGEITMEA 241
|
....*..
gi 488217152 335 AADALKT 341
Cdd:PRK12402 242 AYEALGD 248
|
|
| PRK08939 |
PRK08939 |
primosomal protein DnaI; Reviewed |
144-213 |
5.79e-05 |
|
primosomal protein DnaI; Reviewed
Pssm-ID: 236353 [Multi-domain] Cd Length: 306 Bit Score: 44.86 E-value: 5.79e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 488217152 144 LFFYGGVGLGKTHLMHAIGHQMlqsqpnaKVKYVSS-----ETFANDFINSIQNKTAEEFRQEYRNVDLLLVDDI 213
Cdd:PRK08939 159 LYLYGDFGVGKSYLLAAIANEL-------AKKGVSStllhfPEFIRELKNSISDGSVKEKIDAVKEAPVLMLDDI 226
|
|
| PRK12377 |
PRK12377 |
putative replication protein; Provisional |
108-213 |
2.40e-04 |
|
putative replication protein; Provisional
Pssm-ID: 183482 [Multi-domain] Cd Length: 248 Bit Score: 42.51 E-value: 2.40e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488217152 108 LNPKYTFDTF-VIGKGNQMAHAAALVVAEDPGSIYNPLFFYGGVGLGKTHLMHAIGHQMLQSQPNAKVKYVSSETFAndF 186
Cdd:PRK12377 67 LHRKCSFANYqVQNDGQRYALSQAKSIADELMTGCTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSR--L 144
|
90 100
....*....|....*....|....*...
gi 488217152 187 INSIQNKTAEE-FRQEYRNVDLLLVDDI 213
Cdd:PRK12377 145 HESYDNGQSGEkFLQELCKVDLLVLDEI 172
|
|
| PRK09087 |
PRK09087 |
hypothetical protein; Validated |
109-345 |
2.59e-04 |
|
hypothetical protein; Validated
Pssm-ID: 169652 [Multi-domain] Cd Length: 226 Bit Score: 42.35 E-value: 2.59e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488217152 109 NPKYTFDTFVIGKGNQMAHAaalVVAEDPGSIYNPLFFYGGVGLGKTHLMhaighQMLQSQPNAkvkyvssETFANDFIN 188
Cdd:PRK09087 15 DPAYGRDDLLVTESNRAAVS---LVDHWPNWPSPVVVLAGPVGSGKTHLA-----SIWREKSDA-------LLIHPNEIG 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488217152 189 SIQNKTAEEFRQEYRNVDLLLVDDiqffaekeatqEEFFHTFNALYNEGKQIVLTSDRLPNEIPKLQERLVSRFAWGLSV 268
Cdd:PRK09087 80 SDAANAAAEGPVLIEDIDAGGFDE-----------TGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVV 148
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 488217152 269 DITPPDLETRTAILRKKAAAERLEIPDDTLSYIAGQIDSNIRELEGALVRVQAFAAMNSEDISTSLAADALKTLKSG 345
Cdd:PRK09087 149 EIGEPDDALLSQVIFKLFADRQLYVDPHVVYYLVSRMERSLFAAQTIVDRLDRLALERKSRITRALAAEVLNEMGQA 225
|
|
| PRK06921 |
PRK06921 |
hypothetical protein; Provisional |
142-261 |
8.96e-04 |
|
hypothetical protein; Provisional
Pssm-ID: 180750 [Multi-domain] Cd Length: 266 Bit Score: 40.92 E-value: 8.96e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488217152 142 NPLFFYGGVGLGKTHLMHAIGHQMLQ--SQPNAKVKYVSSETFANDFINSIQNKtAEEFRQeyrnVDLLLVDDI--QFFA 217
Cdd:PRK06921 118 NSIALLGQPGSGKTHLLTAAANELMRkkGVPVLYFPFVEGFGDLKDDFDLLEAK-LNRMKK----VEVLFIDDLfkPVNG 192
|
90 100 110 120
....*....|....*....|....*....|....*....|....*..
gi 488217152 218 EKEATQ---EEFFHTFNALYNEGKQIVLTSDRLPNEIPKLQERLVSR 261
Cdd:PRK06921 193 KPRATEwqiEQMYSVLNYRYLNHKPILISSELTIDELLDIDEALGSR 239
|
|
| IstB_IS21 |
pfam01695 |
IstB-like ATP binding protein; This protein contains an ATP/GTP binding P-loop motif. It is ... |
144-245 |
1.13e-03 |
|
IstB-like ATP binding protein; This protein contains an ATP/GTP binding P-loop motif. It is found associated with IS21 family insertion sequences. The function of this protein is unknown, but it may perform a transposase function.
Pssm-ID: 426385 [Multi-domain] Cd Length: 238 Bit Score: 40.51 E-value: 1.13e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488217152 144 LFFYGGVGLGKTHLMHAIGHQMLQSqpNAKVKYVSSETFANDFINSIQNKTAEEFRQEYRNVDLLLVDDIQFFAEKEATQ 223
Cdd:pfam01695 95 VVLLGPPGVGKTHLAIALGVEACRA--GYSVRFTSAADLVNQLKRAHGDGKLTRKLQQLLKPDVLILDEWGYLPLDQAEA 172
|
90 100
....*....|....*....|..
gi 488217152 224 EEFFHTFNALYnEGKQIVLTSD 245
Cdd:pfam01695 173 NLLFQVISKRY-EHRSIILTSN 193
|
|
| PRK07952 |
PRK07952 |
DNA replication protein DnaC; Validated |
113-213 |
1.54e-03 |
|
DNA replication protein DnaC; Validated
Pssm-ID: 181180 [Multi-domain] Cd Length: 244 Bit Score: 40.14 E-value: 1.54e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488217152 113 TFDTFVIGKGNQMA--HAAALVVAEDPGSIYNpLFFYGGVGLGKTHLMHAIGHQMLQSQPNAKVKYVSS------ETFAN 184
Cdd:PRK07952 70 SFENYRVECEGQMNalSKARQYVEEFDGNIAS-FIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADimsamkDTFSN 148
|
90 100
....*....|....*....|....*....
gi 488217152 185 dfinsiQNKTAEEFRQEYRNVDLLLVDDI 213
Cdd:PRK07952 149 ------SETSEEQLLNDLSNVDLLVIDEI 171
|
|
| PRK06672 |
PRK06672 |
hypothetical protein; Validated |
7-72 |
1.62e-03 |
|
hypothetical protein; Validated
Pssm-ID: 180654 [Multi-domain] Cd Length: 341 Bit Score: 40.52 E-value: 1.62e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 488217152 7 LWNELKATYQKDLSPASYNTWIETANPRtLDQNQLVVEVPSKIHKEYWEKNLATKIVEVGYMLSGN 72
Cdd:PRK06672 194 IWNKIKDKMQLKISRPSYETWVKETTAR-INEDSLIIYFENEFQQEWVKKSYKDLISQIAKELTGN 258
|
|
| PRK06030 |
PRK06030 |
hypothetical protein; Provisional |
370-426 |
2.87e-03 |
|
hypothetical protein; Provisional
Pssm-ID: 180356 Cd Length: 124 Bit Score: 37.83 E-value: 2.87e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*...
gi 488217152 370 DLKGKKRVKSIVV-PRQIAMYLARELTDNSLPKIGAEFGgKDHTTVIHAHEKIQQLMD 426
Cdd:PRK06030 42 EIASPLRGRREVSrIRQIAMYVAHVSLGWPMNEVALAFG-RDRTTVGHACHTVEDLRD 98
|
|
| |
