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Conserved domains on  [gi|488221551|ref|WP_002292759|]
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MULTISPECIES: phosphate ABC transporter permease PstA [Enterococcus]

Protein Classification

PstA family ABC transporter permease( domain architecture ID 11426443)

PstA family ABC transporter permease is the transmembrane subunit (TM) found in periplasmic binding protein (PBP)-dependent ATP-binding cassette (ABC) transporters; similar to phosphate transport system permease protein PstA

Gene Ontology:  GO:0140359|GO:0042626|GO:0043190|GO:0016020
PubMed:  25750732|24638992|18535149|17723295
TCDB:  3.A.1

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PstA COG0581
ABC-type phosphate transport system, permease component [Inorganic ion transport and ...
 35-292 9.57e-97

ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism];


:

Pssm-ID: 440346 [Multi-domain]  Cd Length: 259  Bit Score: 285.39  E-value: 9.57e-97
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488221551  35 RGIPHISWSFLTEPSKAYQEGGGIGIQLFNSIYLLLITMIISFPISLGAGIYLSEYAGKNWLTDVIRTSIEILSSLPSVV 114
Cdd:COG0581   16 KGLPALSWEFLTSSPSPGPEGGGILPAIVGTLLLVLLATLIAVPLGVLAAIYLAEYARGGRLARLIRFAIDVLAGVPSIV 95

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488221551 115 VGLFGFLVFVIQFQYGFSIISGALALTVFNLPLLTRTVEESLQAVHYTQREAGLALGLSRWETVIKVVVPEATPGILTGV 194
Cdd:COG0581   96 YGLFGYALFVLTLGLGFSLLAGALALALLMLPVVIRTTEEALRLVPNSLREASYALGATKWQTIRKVVLPAALPGILTGV 175

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488221551 195 ILSSGRIFGEAAALIYTAGqsapaldftnwnpLSVSSPISIFRQAETLAVHIWKINTEGTmPDGVSVSAGASAVLIIAVL 274
Cdd:COG0581  176 ILAIARAAGETAPLLFTAG-------------VSPFLPLSLFDPFATLPVHIYNLASSPY-PAAQELAWAAALVLLLLVL 241

                        250
                 ....*....|....*...
gi 488221551 275 LFNFGARAIGKRLYRKMT 292
Cdd:COG0581  242 LLNLLARLLRRRFRKKLK 259
 
Name Accession Description Interval E-value
PstA COG0581
ABC-type phosphate transport system, permease component [Inorganic ion transport and ...
 35-292 9.57e-97

ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440346 [Multi-domain]  Cd Length: 259  Bit Score: 285.39  E-value: 9.57e-97
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488221551  35 RGIPHISWSFLTEPSKAYQEGGGIGIQLFNSIYLLLITMIISFPISLGAGIYLSEYAGKNWLTDVIRTSIEILSSLPSVV 114
Cdd:COG0581   16 KGLPALSWEFLTSSPSPGPEGGGILPAIVGTLLLVLLATLIAVPLGVLAAIYLAEYARGGRLARLIRFAIDVLAGVPSIV 95

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488221551 115 VGLFGFLVFVIQFQYGFSIISGALALTVFNLPLLTRTVEESLQAVHYTQREAGLALGLSRWETVIKVVVPEATPGILTGV 194
Cdd:COG0581   96 YGLFGYALFVLTLGLGFSLLAGALALALLMLPVVIRTTEEALRLVPNSLREASYALGATKWQTIRKVVLPAALPGILTGV 175

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488221551 195 ILSSGRIFGEAAALIYTAGqsapaldftnwnpLSVSSPISIFRQAETLAVHIWKINTEGTmPDGVSVSAGASAVLIIAVL 274
Cdd:COG0581  176 ILAIARAAGETAPLLFTAG-------------VSPFLPLSLFDPFATLPVHIYNLASSPY-PAAQELAWAAALVLLLLVL 241

                        250
                 ....*....|....*...
gi 488221551 275 LFNFGARAIGKRLYRKMT 292
Cdd:COG0581  242 LLNLLARLLRRRFRKKLK 259
3a0107s02c TIGR00974
phosphate ABC transporter, permease protein PstA; This model describes PtsA, one of a pair of ...
 7-289 1.59e-75

phosphate ABC transporter, permease protein PstA; This model describes PtsA, one of a pair of permease proteins in the ABC (high affinity) phosphate transporter. In a number of species, this permease is fused with the PtsC protein (TIGR02138). In the model bacterium Escherichia coli, this transport system is induced when the concentration of extrallular inorganic phosphate is low. A constitutive, lower affinity transporter operates otherwise. [Transport and binding proteins, Anions]


Pssm-ID: 273373  Cd Length: 271  Bit Score: 231.74  E-value: 1.59e-75
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488221551    7 DKIATGVLYVVSGIIVLILAALLLYILVRGIPHISWSFLTEPSKAYQEGGGIGIQLFNSIYLLLITMIISFPISLGAGIY 86
Cdd:TIGR00974   1 DKIFTFISLLSALLALLPLIWILWYILIKGLPALNLEFFTKSPTPTGAEGGIGPAIVGTLLLTLLAIVIAVPLGIGAAIY 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488221551   87 LSEYAGKNWLTDVIRTSIEILSSLPSVVVGLFGFLVFVIQ-FQYGFSIISGALALTVFNLPLLTRTVEESLQAVHYTQRE 165
Cdd:TIGR00974  81 LAEYANGSRFTKIIRFAVDILAGVPSIVVGLFGYGFFVLTyLGGGFSLLAGALALALLILPVIIRTTEEALKAVPKDLRE 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488221551  166 AGLALGLSRWETVIKVVVPEATPGILTGVILSSGRIFGEAAALIYTAGQSAPAldftnwnplsvssPISIFRQAETLAVH 245
Cdd:TIGR00974 161 ASLALGATKWQTIFKVVLPAALPGILTGIILSIARAAGETAPLLFTAGGSAFT-------------PPNLFDPFATLPVL 227

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....
gi 488221551  246 IWKINTEGTMPDGVSVSAGASAVLIIAVLLFNFGARAIGKRLYR 289
Cdd:TIGR00974 228 IYNLASEGPYVEAQQLAWAAALVLIVLVLLLNLIARLLRRRFKK 271
pstA PRK11268
phosphate ABC transporter permease PstA;
35-212 6.32e-36

phosphate ABC transporter permease PstA;


Pssm-ID: 183065 [Multi-domain]  Cd Length: 295  Bit Score: 130.57  E-value: 6.32e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488221551  35 RGIPHISWSFLTEPSKAYQ-EGGGIGIQLFNSIYLLLITMIISFPISLGAGIYLSEYAGKNWLTDVIRTSIEILSSLPSV 113
Cdd:PRK11268  55 LGIDGMSLALFTEMTPPPNtAGGGLANAIAGSGLLILWATVVGTPLGIMAGIYLAEYGRKSWLAEVIRFINDILLSAPSI 134

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488221551 114 VVGLFGFLVFVIQFQYgFSIISGALALTVFNLPLLTRTVEESLQAVHYTQREAGLALGLSRWETVIKVVVPEATPGILTG 193
Cdd:PRK11268 135 VVGLFVYTIVVAQMEH-FSGWAGVIALALLQIPIVIRTTENMLKLVPDSLREAAYALGTPKWKMISAITLKASVSGIMTG 213

                        170
                 ....*....|....*....
gi 488221551 194 VILSSGRIFGEAAALIYTA 212
Cdd:PRK11268 214 VLLAIARIAGETAPLLFTA 232
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 62-236 7.85e-18

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 79.63  E-value: 7.85e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488221551  62 LFNSIYLLLITMIISFPISLGAGIYLSEYagKNWLTDVIRTSIEILSSLPSVVVGLFGFLVFVIQFQYG---FSIISGAL 138
Cdd:cd06261    1 LLNTLLLALIATLLALVLGLLLGIILARK--RGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGilpGLGLPALI 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488221551 139 ALTVFNLPLLTRTVEESLQAVHYTQREAGLALGLSRWETVIKVVVPEATPGILTGVILSSGRIFGEAAALIYTAGQSAPA 218
Cdd:cd06261   79 LALLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGEAPG 158

                        170
                 ....*....|....*...
gi 488221551 219 LDFTNWNPLSVSSPISIF 236
Cdd:cd06261  159 PGTGLLLIFAILFPGDLG 176
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 80-216 5.41e-11

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 60.39  E-value: 5.41e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488221551   80 SLGAGIYLSEYAGKnWLTDVIRTSIEILSSLPSVVVGLFGFLVFVIQFqYGFSIISGALALTVFNLPLLTRTVEESLQAV 159
Cdd:pfam00528   1 GIPLGIIAALRRGR-RLDRLLRPLIDLLQALPSFVLAILLVVIAILSI-LGHGILPAIILALLGWAGYARLIRRAALRSL 78

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 488221551  160 HYTQREAGLALGLSRWETVIKVVVPEATPGILTGVILSSGRIFGEAAALIYTAGQSA 216
Cdd:pfam00528  79 PSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSWPG 135
ABC_perm1 NF038017
ABC transporter permease; Proteins of this family are the permease subunit of an ABC ...
 69-213 3.29e-08

ABC transporter permease; Proteins of this family are the permease subunit of an ABC transporter complex, which may be involved in tungstate uptake.


Pssm-ID: 411610 [Multi-domain]  Cd Length: 184  Bit Score: 52.55  E-value: 3.29e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488221551  69 LLITMIISFPisLGAGIYLSEYAGKNWLTDVIRTsieiLSSLPSVVVGLFGFLVFVIQFQYGF--------SIIsgaLAL 140
Cdd:NF038017   9 TLIAALIGIP--LGALLALRRFPGRRLVISLLNT----LMGLPPVVVGLIVYLLLSRSGPLGFlgllytptAMI---IAQ 79

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 488221551 141 TVFNLPLLTRTVEESLQAVHYTQREAGLALGLSRWETVIkVVVPEATPGILTGVILSSGRIFGEAAALIYTAG 213
Cdd:NF038017  80 AVLALPIVAGLTLAAVQGLDPELRLQILSLGATRWQALW-TLLKEARFALLAAVLAGFGRAISEVGAVMMVGG 151
 
Name Accession Description Interval E-value
PstA COG0581
ABC-type phosphate transport system, permease component [Inorganic ion transport and ...
 35-292 9.57e-97

ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440346 [Multi-domain]  Cd Length: 259  Bit Score: 285.39  E-value: 9.57e-97
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488221551  35 RGIPHISWSFLTEPSKAYQEGGGIGIQLFNSIYLLLITMIISFPISLGAGIYLSEYAGKNWLTDVIRTSIEILSSLPSVV 114
Cdd:COG0581   16 KGLPALSWEFLTSSPSPGPEGGGILPAIVGTLLLVLLATLIAVPLGVLAAIYLAEYARGGRLARLIRFAIDVLAGVPSIV 95

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488221551 115 VGLFGFLVFVIQFQYGFSIISGALALTVFNLPLLTRTVEESLQAVHYTQREAGLALGLSRWETVIKVVVPEATPGILTGV 194
Cdd:COG0581   96 YGLFGYALFVLTLGLGFSLLAGALALALLMLPVVIRTTEEALRLVPNSLREASYALGATKWQTIRKVVLPAALPGILTGV 175

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488221551 195 ILSSGRIFGEAAALIYTAGqsapaldftnwnpLSVSSPISIFRQAETLAVHIWKINTEGTmPDGVSVSAGASAVLIIAVL 274
Cdd:COG0581  176 ILAIARAAGETAPLLFTAG-------------VSPFLPLSLFDPFATLPVHIYNLASSPY-PAAQELAWAAALVLLLLVL 241

                        250
                 ....*....|....*...
gi 488221551 275 LFNFGARAIGKRLYRKMT 292
Cdd:COG0581  242 LLNLLARLLRRRFRKKLK 259
3a0107s02c TIGR00974
phosphate ABC transporter, permease protein PstA; This model describes PtsA, one of a pair of ...
 7-289 1.59e-75

phosphate ABC transporter, permease protein PstA; This model describes PtsA, one of a pair of permease proteins in the ABC (high affinity) phosphate transporter. In a number of species, this permease is fused with the PtsC protein (TIGR02138). In the model bacterium Escherichia coli, this transport system is induced when the concentration of extrallular inorganic phosphate is low. A constitutive, lower affinity transporter operates otherwise. [Transport and binding proteins, Anions]


Pssm-ID: 273373  Cd Length: 271  Bit Score: 231.74  E-value: 1.59e-75
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488221551    7 DKIATGVLYVVSGIIVLILAALLLYILVRGIPHISWSFLTEPSKAYQEGGGIGIQLFNSIYLLLITMIISFPISLGAGIY 86
Cdd:TIGR00974   1 DKIFTFISLLSALLALLPLIWILWYILIKGLPALNLEFFTKSPTPTGAEGGIGPAIVGTLLLTLLAIVIAVPLGIGAAIY 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488221551   87 LSEYAGKNWLTDVIRTSIEILSSLPSVVVGLFGFLVFVIQ-FQYGFSIISGALALTVFNLPLLTRTVEESLQAVHYTQRE 165
Cdd:TIGR00974  81 LAEYANGSRFTKIIRFAVDILAGVPSIVVGLFGYGFFVLTyLGGGFSLLAGALALALLILPVIIRTTEEALKAVPKDLRE 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488221551  166 AGLALGLSRWETVIKVVVPEATPGILTGVILSSGRIFGEAAALIYTAGQSAPAldftnwnplsvssPISIFRQAETLAVH 245
Cdd:TIGR00974 161 ASLALGATKWQTIFKVVLPAALPGILTGIILSIARAAGETAPLLFTAGGSAFT-------------PPNLFDPFATLPVL 227

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....
gi 488221551  246 IWKINTEGTMPDGVSVSAGASAVLIIAVLLFNFGARAIGKRLYR 289
Cdd:TIGR00974 228 IYNLASEGPYVEAQQLAWAAALVLIVLVLLLNLIARLLRRRFKK 271
PstC COG0573
ABC-type phosphate transport system, permease component [Inorganic ion transport and ...
 57-290 7.21e-43

ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440338 [Multi-domain]  Cd Length: 303  Bit Score: 148.70  E-value: 7.21e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488221551  57 GIGIQLFNSIYLLLITMIISFPISLGAGIYLSEYAGKnWLTDVIRTSIEILSSLPSVVVGLFGFLVFVIQFQ-------Y 129
Cdd:COG0573   74 GILPLIVGTLLVSLIALLIAVPLGLGIAIFLSEYAPP-RLRRILKPAIELLAGIPSVVYGFWGLFVLVPLLRdlfpwppS 152

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488221551 130 GFSIISGALALTVFNLPLLTRTVEESLQAVHYTQREAGLALGLSRWETVIKVVVPEATPGILTGVILSSGRIFGEAAALI 209
Cdd:COG0573  153 GFSLLTAGIVLAIMILPTITSLSRDALRAVPRSLREAALALGATRWETIRKVVLPAARSGIIAAVILGLGRALGETMAVL 232

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488221551 210 YTAGQSApaldftnwnplsvSSPISIFRQAETLAVHIwKINTEGTMPDGVSVSA--GASAVLIIAVLLFNFGARAIGKRL 287
Cdd:COG0573  233 MVAGNAP-------------QIPFSLFDPGRTLTALI-ALEFGEAPFGSLHYSAlfALGLVLFVITLLVNLLARLIVRRY 298


                 ...
gi 488221551 288 YRK 290
Cdd:COG0573  299 REK 301
phosphate_pstC TIGR02138
phosphate ABC transporter, permease protein PstC; The typical operon for the high affinity ...
 7-286 4.89e-37

phosphate ABC transporter, permease protein PstC; The typical operon for the high affinity inorganic phosphate ABC transporter encodes an ATP-binding protein, a phosphate-binding protein, and two permease proteins. This family consists of one of the two permease proteins, PstC, which is homologous to PstA (TIGR00974). In the model bacterium Escherichia coli, this transport system is induced when the concentration of extrallular inorganic phosphate is low. A constitutive, lower affinity transporter operates otherwise. [Transport and binding proteins, Anions]


Pssm-ID: 273992 [Multi-domain]  Cd Length: 295  Bit Score: 133.16  E-value: 4.89e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488221551    7 DKIATGVLYVVSGIIVLILAALLLYILVRGIPHIS----WSFLTEP-----SKAYQEGGGIGIQLFNSIYLLLITMIISF 77
Cdd:TIGR02138   1 EKIFKGLLLFSAVIIVLVLLLIVLFLLYEAIPAFEkngiLNFLTGTvwdpgSGPVQEQYGALPLIVGTLITSLIALLIAV 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488221551   78 PISLGAGIYLSEYAGKnWLTDVIRTSIEILSSLPSVVVGLFGFLVFV-----------------IQFQyGFSIISGALAL 140
Cdd:TIGR02138  81 PVGIGIAIFLSEIAPK-RVRSVLKPVVELLAGIPSVVYGFWGLFVLVpflkphfqpflgsnlglIPLF-GGPILTAGIVL 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488221551  141 TVFNLPLLTRTVEESLQAVHYTQREAGLALGLSRWETVIKVVVPEATPGILTGVILSSGRIFGEAAALIYTAGQSAPald 220
Cdd:TIGR02138 159 AIMILPTIASISRDALRAVPRSYKEASYALGATKWETIRRVILPAARSGIVGAVVLGLGRALGETMAVTMVIGNVFP--- 235

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 488221551  221 ftnwnplsvSSPISIFRQAETLAVHI-WKINTEGTMPDGVSVSAGASAVLIIAVLLFNFGARAIGKR 286
Cdd:TIGR02138 236 ---------ISPLSLFDPGTTITSLIaNQFGEASGGSVHTSALFALGLVLFVITLLVNILARYIVRR 293
pstA PRK11268
phosphate ABC transporter permease PstA;
35-212 6.32e-36

phosphate ABC transporter permease PstA;


Pssm-ID: 183065 [Multi-domain]  Cd Length: 295  Bit Score: 130.57  E-value: 6.32e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488221551  35 RGIPHISWSFLTEPSKAYQ-EGGGIGIQLFNSIYLLLITMIISFPISLGAGIYLSEYAGKNWLTDVIRTSIEILSSLPSV 113
Cdd:PRK11268  55 LGIDGMSLALFTEMTPPPNtAGGGLANAIAGSGLLILWATVVGTPLGIMAGIYLAEYGRKSWLAEVIRFINDILLSAPSI 134

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488221551 114 VVGLFGFLVFVIQFQYgFSIISGALALTVFNLPLLTRTVEESLQAVHYTQREAGLALGLSRWETVIKVVVPEATPGILTG 193
Cdd:PRK11268 135 VVGLFVYTIVVAQMEH-FSGWAGVIALALLQIPIVIRTTENMLKLVPDSLREAAYALGTPKWKMISAITLKASVSGIMTG 213

                        170
                 ....*....|....*....
gi 488221551 194 VILSSGRIFGEAAALIYTA 212
Cdd:PRK11268 214 VLLAIARIAGETAPLLFTA 232
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 62-236 7.85e-18

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 79.63  E-value: 7.85e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488221551  62 LFNSIYLLLITMIISFPISLGAGIYLSEYagKNWLTDVIRTSIEILSSLPSVVVGLFGFLVFVIQFQYG---FSIISGAL 138
Cdd:cd06261    1 LLNTLLLALIATLLALVLGLLLGIILARK--RGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGilpGLGLPALI 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488221551 139 ALTVFNLPLLTRTVEESLQAVHYTQREAGLALGLSRWETVIKVVVPEATPGILTGVILSSGRIFGEAAALIYTAGQSAPA 218
Cdd:cd06261   79 LALLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGEAPG 158

                        170
                 ....*....|....*...
gi 488221551 219 LDFTNWNPLSVSSPISIF 236
Cdd:cd06261  159 PGTGLLLIFAILFPGDLG 176
CysU COG0555
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]; ...
 62-213 7.89e-14

ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440321 [Multi-domain]  Cd Length: 268  Bit Score: 69.78  E-value: 7.89e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488221551  62 LFNSIYLLLITMIISFPISLGAGIYLSEYA--GKNwltdVIRTSIEILSSLPSVVVGL-----------FGFLVFVIQFQ 128
Cdd:COG0555   56 LKLSLGTALIAALINLVFGLPLAWVLVRYRfpGKR----LVDALVDLPFALPTAVAGIallllfgpngwLGQLLAPLGIK 131

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488221551 129 YGFSIISGALALTVFNLPLLTRTVEESLQAVHYTQREAGLALGLSRWETVIKVVVPEATPGILTGVILSSGRIFGEAAAL 208
Cdd:COG0555  132 VAFTPLGIVLAQTFVSLPFVVRTVQPVLEELDPELEEAAATLGASRWQTFRRVILPLLLPALLTGFALAFARALGEFGAV 211


                 ....*
gi 488221551 209 IYTAG 213
Cdd:COG0555  212 IFIAG 216
PotC COG1177
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ...
 62-290 2.93e-12

ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];


Pssm-ID: 440790 [Multi-domain]  Cd Length: 262  Bit Score: 65.13  E-value: 2.93e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488221551  62 LFNSIYLLLITMIISFPISLGAGIYLSEYA--GKNWLTDVIRTSIeilsSLPSVVVGLfGFLVFVIQFQYGFSIISGALA 139
Cdd:COG1177   63 LLNSLLIALLSTLLATVLGTPAALALARYRfrGRRLLLALLLLPL----VVPGIVLGV-ALLLLFSALGLSGGLWGLILA 137

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488221551 140 LTVFNLPLLTRTVEESLQAVHYTQREAGLALGLSRWETVIKVVVPEATPGILTGVILSSGRIFGEAAALIYTAGqsapal 219
Cdd:COG1177  138 HVVFTLPFVVLVVLARLQGFDPSLEEAARDLGASPWQTFRRVTLPLIAPGILAGALLAFTLSFDEFVITLFLAG------ 211

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 488221551 220 dftnwnplsvsspisifRQAETLAVHIWKINTEGTMPdgvSVSAgASAVLIIAVLLFNFGARAIGKRLYRK 290
Cdd:COG1177  212 -----------------PGVTTLPVYIYSMIRRGISP---EINA-LSTLLILLSLLLLLLAERLRRRGERR 261
pstC PRK11275
phosphate ABC transporter permease PstC;
70-213 2.90e-11

phosphate ABC transporter permease PstC;


Pssm-ID: 183070  Cd Length: 319  Bit Score: 62.79  E-value: 2.90e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488221551  70 LITMIISFPISLGAGIYLSEYAgKNWLTDVIRTSIEILSSLPSVVVGLFGFLVFVIQFQ--------------------- 128
Cdd:PRK11275  83 FIALLIAVPVSFGIALFLTELA-PGWLKRPLGIAIELLAAIPSIVYGMWGLFVFAPLFAtyfqepvgnvlsnipivgalf 161

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488221551 129 ----YGFSIISGALALTVFNLPLLTRTVEESLQAVHYTQREAGLALGLSRWETVIKVVVPEATPGILTGVILSSGRIFGE 204
Cdd:PRK11275 162 sgpaFGIGILAAGVILAIMIIPYIAAVMRDVFEQTPVMMKESAYGIGCTTWEVIWRIVLPFTKNGVIGGVMLGLGRALGE 241


                 ....*....
gi 488221551 205 AAALIYTAG 213
Cdd:PRK11275 242 TMAVTFIIG 250
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
62-286 3.20e-11

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 63.64  E-value: 3.20e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488221551  62 LFNSIYLLLITMIISFPISLGAGIYLSEYagKNWLTDVIRTSIEILSSLPSVVVGLfGFLVFVIQFQYGfsIISGALALT 141
Cdd:COG1178  340 LLNSLLLALLAALLAVLLALLLAYLVRRR--RGRLARLLDRLAMLPYAVPGIVLGL-GLLLLFNRPLPL--LLYGTLAIL 414

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488221551 142 VFN-----LPLLTRTVEESLQAVHYTQREAGLALGLSRWETVIKVVVPEATPGILTGVILSSGRIFGE--AAALIYTAGQ 214
Cdd:COG1178  415 VLAyvvrfLPFALRSLEAALAQIDPSLEEAARSLGASPLRTLRRVTLPLLRPGLLAAALLVFVTSMKElsATLLLRPPGF 494

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 488221551 215 sapaldftnwnplsvsspisifrqaETLAVHIWKINTEGTMPDGvsvsAGASAVLIIAVLLFNFGARAIGKR 286
Cdd:COG1178  495 -------------------------ETLAVLIYQLASSGRYGEA----AALALLLVLVSLLPVLLLERLLGR 537
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 80-216 5.41e-11

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 60.39  E-value: 5.41e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488221551   80 SLGAGIYLSEYAGKnWLTDVIRTSIEILSSLPSVVVGLFGFLVFVIQFqYGFSIISGALALTVFNLPLLTRTVEESLQAV 159
Cdd:pfam00528   1 GIPLGIIAALRRGR-RLDRLLRPLIDLLQALPSFVLAILLVVIAILSI-LGHGILPAIILALLGWAGYARLIRRAALRSL 78

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 488221551  160 HYTQREAGLALGLSRWETVIKVVVPEATPGILTGVILSSGRIFGEAAALIYTAGQSA 216
Cdd:pfam00528  79 PSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSWPG 135
PRK10971 PRK10971
sulfate/thiosulfate ABC transporter permease CysT;
109-216 6.58e-10

sulfate/thiosulfate ABC transporter permease CysT;


Pssm-ID: 182873  Cd Length: 277  Bit Score: 58.61  E-value: 6.58e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488221551 109 SLPSVVVGLFGFLVFVIQFQYG-----------FSIISGALALTVFNLPLLTRTVEESLQAVHYTQREAGLALGLSRWET 177
Cdd:PRK10971 105 ALPTAVAGLTLASLFSVNGWYGewlakfdikvtYTWLGIAVAMAFTSIPFVVRTVQPVLEELGPEYEEAAETLGATRWQS 184

                         90       100       110
                 ....*....|....*....|....*....|....*....
gi 488221551 178 VIKVVVPEATPGILTGVILSSGRIFGEAAALIYTAGQSA 216
Cdd:PRK10971 185 FRKVVLPELSPALLAGVALSFTRSLGEFGAVIFIAGNIA 223
modB PRK09421
molybdate ABC transporter permease subunit;
70-209 8.91e-10

molybdate ABC transporter permease subunit;


Pssm-ID: 181841  Cd Length: 229  Bit Score: 57.62  E-value: 8.91e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488221551  70 LITMIISFPISLGAGIYLS--EYAGKNWLTDVIRTSIeilsSLPSVVVG-----LFG-------FLVFVIQFQYGFSIIS 135
Cdd:PRK09421  19 SVAVLFSLPFGILVAWLLArcRFPGKSLLDSLLHLPL----VLPPVVTGyllliSMGrrgfigqWLYEWFGISFAFSWRG 94

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 488221551 136 GALALTVFNLPLLTRTVEESLQAVHYTQREAGLALGLSRWETVIKVVVPEATPGILTGVILSSGRIFGEAAALI 209
Cdd:PRK09421  95 AALAAAVMAFPLMVRAIRLSLEAVDRKLEQAARTLGASPWRVFFTITLPLTLPGIIAGTVLAFARSLGEFGATI 168
permease_CysT TIGR02139
sulfate ABC transporter, permease protein CysT; This model represents CysT, one of two ...
 116-213 1.54e-09

sulfate ABC transporter, permease protein CysT; This model represents CysT, one of two homologous, tandem permeases in the sulfate ABC transporter system; the other is CysW (TIGR02140). The sulfate transporter has been described in E. coli as transporting sulfate, thiosulfate, selenate, and selenite. Sulfate transporters may also transport molybdate ion if a specific molybdate transporter is not present. [Transport and binding proteins, Anions]


Pssm-ID: 131194  Cd Length: 265  Bit Score: 57.33  E-value: 1.54e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488221551  116 GLFGFLVFVIQFQYGFSIISGALALTVFNLPLLTRTVEESLQAVHYTQREAGLALGLSRWETVIKVVVPEATPGILTGVI 195
Cdd:TIGR02139 115 GWIGSFLAPLGIKIAFTPLGIVIALVFVSLPFVVRTVQPVLEEIEKELEEAAASLGASRWQTFWRVILPALLPALLTGFA 194

                          90
                  ....*....|....*...
gi 488221551  196 LSSGRIFGEAAALIYTAG 213
Cdd:TIGR02139 195 LAFARAVGEYGSVIFIAG 212
ABC_perm1 NF038017
ABC transporter permease; Proteins of this family are the permease subunit of an ABC ...
 69-213 3.29e-08

ABC transporter permease; Proteins of this family are the permease subunit of an ABC transporter complex, which may be involved in tungstate uptake.


Pssm-ID: 411610 [Multi-domain]  Cd Length: 184  Bit Score: 52.55  E-value: 3.29e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488221551  69 LLITMIISFPisLGAGIYLSEYAGKNWLTDVIRTsieiLSSLPSVVVGLFGFLVFVIQFQYGF--------SIIsgaLAL 140
Cdd:NF038017   9 TLIAALIGIP--LGALLALRRFPGRRLVISLLNT----LMGLPPVVVGLIVYLLLSRSGPLGFlgllytptAMI---IAQ 79

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 488221551 141 TVFNLPLLTRTVEESLQAVHYTQREAGLALGLSRWETVIkVVVPEATPGILTGVILSSGRIFGEAAALIYTAG 213
Cdd:NF038017  80 AVLALPIVAGLTLAAVQGLDPELRLQILSLGATRWQALW-TLLKEARFALLAAVLAGFGRAISEVGAVMMVGG 151
cysT CHL00187
sulfate transport protein; Provisional
 89-213 3.59e-08

sulfate transport protein; Provisional


Pssm-ID: 214388 [Multi-domain]  Cd Length: 237  Bit Score: 53.09  E-value: 3.59e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488221551  89 EYAGKNWLtDVIrtsIEILSSLPSVVVGL-----------FGFLVFVIQFQYGFSIISGALALTVFNLPLLTRTVEESLQ 157
Cdd:CHL00187  86 NFPGKRLL-DAA---VDLPFALPTSVAGLtlatvygdngwIGHLLSHLGIQIVFTKLGVLLAMIFVSFPFVVRTIQPVLQ 161

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 488221551 158 AVHYTQREAGLALGLSRWETVIKVVVPEATPGILTGVILSSGRIFGEAAALIYTAG 213
Cdd:CHL00187 162 EIEKELEEAAWSLGASPWQTFWKVIFPPLIPALLTGLALTFSRAIGEYGSIVIISS 217
HisM COG0765
ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]; ...
 62-191 4.40e-08

ABC-type amino acid transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 440528 [Multi-domain]  Cd Length: 218  Bit Score: 52.38  E-value: 4.40e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488221551  62 LFNSIYLLLITMIISFPisLGAGIYLSEYAGKNWLTDVIRTSIEILSSLPSVVVgLFgFLVFVI-QFQYGFS-IISGALA 139
Cdd:COG0765   19 LLVTLLLTVLAIVLGLV--LGLLLALARLSPNPVLRWLATAYVEFFRGTPLLVQ-LF-FIYFGLpLLGIDLSpFVAAVIA 94

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|..
gi 488221551 140 LTVFNLPLLTRTVEESLQAVHYTQREAGLALGLSRWETVIKVVVPEATPGIL 191
Cdd:COG0765   95 LTLNSAAYLAEIVRAGIQSVPKGQWEAARALGLSRWQTMRRIILPQALRIIL 146
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
62-196 1.36e-07

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 52.47  E-value: 1.36e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488221551  62 LFNSIYLLLITMIISFPISLGAG--IYLSEYAGKNWLtdvirtsiEILSSLPSVV---------VGLFGF---------L 121
Cdd:COG1178   56 LGNTLLLALLVTLLSLLLGVPLAwlLARTDFPGRRLL--------RWLLLLPLALppyvvalawIALFGPngllntllrA 127

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 488221551 122 VFVIQFQYGFSIISGALALTVFNLPLLTRTVEESLQAVHYTQREAGLALGLSRWETVIKVVVPEATPGILTGVIL 196
Cdd:COG1178  128 LFGLEPPDIYGLGGIILVLVLFNYPYVYLLLRAALRSIDASLEEAARSLGASPWRAFRRVTLPLLRPAIAAGALL 202
TauC COG0600
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion ...
 56-199 2.57e-06

ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440365 [Multi-domain]  Cd Length: 254  Bit Score: 47.84  E-value: 2.57e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488221551  56 GGIGIQLFNSIYLLLITMIISFPISLGAGIYLSEYAgknWLTDVIRTSIEILSSLPSVVVGLFGFLVFviqfqyGFSIIS 135
Cdd:COG0600   57 GELWEHLLASLLRVLLGFALAALLGVPLGLLLGLSR---LLRRLLDPLLVFLRPIPPLALAPLLILWF------GIGEAS 127

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 488221551 136 GALALTVFNLPLLTRTVEESLQAVHYTQREAGLALGLSRWETVIKVVVPEATPGILTGVILSSG 199
Cdd:COG0600  128 KIFVIFLGAFFPILLNTAAGVRSVDPELLELARSLGASRWQILRKVVLPAALPYIFTGLRIALG 191
DppB COG0601
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ...
 58-203 1.15e-04

ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];


Pssm-ID: 440366 [Multi-domain]  Cd Length: 314  Bit Score: 43.13  E-value: 1.15e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488221551  58 IGIQLFNSIYLLLITMIISFPISLGAGIYLSEYAGKnWLTDVIRTSIEILSSLPSVVVGLFGFLVFVIQFQ----YGFSI 133
Cdd:COG0601   91 IAERLPVTLELALLALLLALLIGIPLGILAALRRGS-WLDRLITVLALLGISIPSFWLGLLLILLFAVKLGwlpvSGRVS 169

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488221551 134 ISG------------ALALTVFNLPLLTRTVEESLQAV---HY--TQReaglALGLSRWETVIKVVVPEATPGILTGVIL 196
Cdd:COG0601  170 PWEdfldalrhlilpALTLALGSLAGIARLTRSSMLEVlgqDYvrTAR----AKGLSERRVLLRHALRNALIPVVTVLGL 245


                 ....*..
gi 488221551 197 SSGRIFG 203
Cdd:COG0601  246 QLGGLLG 252
PotB COG1176
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport ...
 99-196 9.08e-04

ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism];


Pssm-ID: 440789 [Multi-domain]  Cd Length: 287  Bit Score: 40.13  E-value: 9.08e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488221551  99 VIRTSIEILSSLPSVVVGL-FGFLVFVIqfqygfsiisgalaltvfnLPLLTrtveeSLQAVHYTQREAGLALGLSRWET 177
Cdd:COG1176  143 LIDEPLRLLYTEFAVVIGLvYVYLPFMV-------------------LPLYA-----ALEKIDPSLLEAARDLGASPWQT 198

                         90
                 ....*....|....*....
gi 488221551 178 VIKVVVPEATPGILTGVIL 196
Cdd:COG1176  199 FRRVILPLSLPGIIAGSLL 217
PRK11123 PRK11123
arginine ABC transporter permease ArtQ;
118-190 3.04e-03

arginine ABC transporter permease ArtQ;


Pssm-ID: 182979 [Multi-domain]  Cd Length: 238  Bit Score: 38.12  E-value: 3.04e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488221551 118 FGFLVFVIQFQYGFSIIS----GALALTVFNLPLLTRTVEESLQAVHYTQREAGLALGLSRWETVIKVVVPE----ATPG 189
Cdd:PRK11123  85 LGFVQIPVQMDIENFEVSpflcGVIALSLLYAAYASQTLRGALKAVPVGQWESGQALGLSKSAIFFRLVMPQmwrhALPG 164


                 .
gi 488221551 190 I 190
Cdd:PRK11123 165 L 165
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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