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Conserved domains on  [gi|488223370|ref|WP_002294578|]
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MULTISPECIES: 50S ribosomal protein L33 [Enterococcus]

Protein Classification

50S ribosomal protein L33( domain architecture ID 10011455)

50S ribosomal protein L33 is a component of the large ribosomal subunit 50S

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
rpmG PRK00504
50S ribosomal protein L33; Validated
 1-50 9.91e-18

50S ribosomal protein L33; Validated


:

Pssm-ID: 234783  Cd Length: 50  Bit Score: 67.63  E-value: 9.91e-18
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|
gi 488223370  1 MAKKKAALACSVCGSRNYTKSVSEGKSGERLEINKFCKYCNQYTLHKETK 50
Cdd:PRK00504  1 MMRKKITLACTECKSRNYTTTKNKKNTPERLELKKFCPRCNKHTLHKETK 50
 
Name Accession Description Interval E-value
rpmG PRK00504
50S ribosomal protein L33; Validated
 1-50 9.91e-18

50S ribosomal protein L33; Validated


Pssm-ID: 234783  Cd Length: 50  Bit Score: 67.63  E-value: 9.91e-18
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|
gi 488223370  1 MAKKKAALACSVCGSRNYTKSVSEGKSGERLEINKFCKYCNQYTLHKETK 50
Cdd:PRK00504  1 MMRKKITLACTECKSRNYTTTKNKKNTPERLELKKFCPRCNKHTLHKETK 50
RpmG COG0267
Ribosomal protein L33 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L33 ...
 1-50 5.61e-15

Ribosomal protein L33 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L33 is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 440037  Cd Length: 52  Bit Score: 60.94  E-value: 5.61e-15
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|
gi 488223370  1 MAKKKAALACSVCGSRNYTKSVSEGKSGERLEINKFCKYCNQYTLHKETK 50
Cdd:COG0267   3 GMREKITLACTECKGRNYTTTKNKRNTPERLELKKYCPKCRKHTLHKETK 52
Ribosomal_L33 pfam00471
Ribosomal protein L33;
5-50 3.55e-13

Ribosomal protein L33;


Pssm-ID: 425701  Cd Length: 46  Bit Score: 56.28  E-value: 3.55e-13
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*.
gi 488223370   5 KAALACSVCGSRNYTKSVSEGKSGERLEINKFCKYCNQYTLHKETK 50
Cdd:pfam00471  1 KITLACTECKGRNYTTTKNKKNTPERLELKKYCPKCRKHTLHKETK 46
rpmG_bact TIGR01023
ribosomal protein L33, bacterial type; This model describes bacterial ribosomal protein L33 ...
 1-50 1.18e-08

ribosomal protein L33, bacterial type; This model describes bacterial ribosomal protein L33 and its chloroplast and mitochondrial equivalents. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 273399  Cd Length: 54  Bit Score: 45.13  E-value: 1.18e-08
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....
gi 488223370   1 MAKKKA----ALACSVCGSRNYTKSVSEGKSGERLEINKFCKYCNQYTLHKETK 50
Cdd:TIGR01023  1 MAKKGAreliRLVCTACTGINYTTTKNRRNKPEKLELRKYCPVCRKHVLHKEAK 54
 
Name Accession Description Interval E-value
rpmG PRK00504
50S ribosomal protein L33; Validated
 1-50 9.91e-18

50S ribosomal protein L33; Validated


Pssm-ID: 234783  Cd Length: 50  Bit Score: 67.63  E-value: 9.91e-18
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|
gi 488223370  1 MAKKKAALACSVCGSRNYTKSVSEGKSGERLEINKFCKYCNQYTLHKETK 50
Cdd:PRK00504  1 MMRKKITLACTECKSRNYTTTKNKKNTPERLELKKFCPRCNKHTLHKETK 50
RpmG COG0267
Ribosomal protein L33 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L33 ...
 1-50 5.61e-15

Ribosomal protein L33 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L33 is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 440037  Cd Length: 52  Bit Score: 60.94  E-value: 5.61e-15
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|
gi 488223370  1 MAKKKAALACSVCGSRNYTKSVSEGKSGERLEINKFCKYCNQYTLHKETK 50
Cdd:COG0267   3 GMREKITLACTECKGRNYTTTKNKRNTPERLELKKYCPKCRKHTLHKETK 52
Ribosomal_L33 pfam00471
Ribosomal protein L33;
5-50 3.55e-13

Ribosomal protein L33;


Pssm-ID: 425701  Cd Length: 46  Bit Score: 56.28  E-value: 3.55e-13
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*.
gi 488223370   5 KAALACSVCGSRNYTKSVSEGKSGERLEINKFCKYCNQYTLHKETK 50
Cdd:pfam00471  1 KITLACTECKGRNYTTTKNKKNTPERLELKKYCPKCRKHTLHKETK 46
rpmG_bact TIGR01023
ribosomal protein L33, bacterial type; This model describes bacterial ribosomal protein L33 ...
 1-50 1.18e-08

ribosomal protein L33, bacterial type; This model describes bacterial ribosomal protein L33 and its chloroplast and mitochondrial equivalents. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 273399  Cd Length: 54  Bit Score: 45.13  E-value: 1.18e-08
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....
gi 488223370   1 MAKKKA----ALACSVCGSRNYTKSVSEGKSGERLEINKFCKYCNQYTLHKETK 50
Cdd:TIGR01023  1 MAKKGAreliRLVCTACTGINYTTTKNRRNKPEKLELRKYCPVCRKHVLHKEAK 54
rpmG PRK00595
50S ribosomal protein L33; Validated
 8-50 1.51e-06

50S ribosomal protein L33; Validated


Pssm-ID: 179075  Cd Length: 53  Bit Score: 39.79  E-value: 1.51e-06
                        10        20        30        40
                ....*....|....*....|....*....|....*....|...
gi 488223370  8 LACSVCGSRNYTKSVSEGKSGERLEINKFCKYCNQYTLHKETK 50
Cdd:PRK00595 11 LESTEGTGRFYTTTKNKRNTPEKLELKKYDPVLRKHVLHKETK 53
rpl33 CHL00104
ribosomal protein L33
 1-50 8.10e-05

ribosomal protein L33


Pssm-ID: 177033  Cd Length: 66  Bit Score: 35.72  E-value: 8.10e-05
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 488223370  1 MAKKKAA-----LACSVCgSRNYTKSVSEGKS-----------GERLEINKFCKYCNQYTLHKETK 50
Cdd:CHL00104  1 MAKGKDVrvtviLECTSC-VRNGVNKESTGISryitqknrhntPNRLELKKFCPYCYKHTIHKEIK 65
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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