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Conserved domains on  [gi|488283818|ref|WP_002355026|]
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MULTISPECIES: DinB family glutathione transferase [Enterococcus]

Protein Classification

DinB family protein( domain architecture ID 229740)

DinB family protein adopts a four-helix bundle structure, similar to DNA damage-inducible protein DinB, a translesion Y-family DNA polymerase that possesses a specialized lesion bypass function

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DinB_2 super family cl46334
DinB superfamily; The DinB family are an uncharacterized family of potential enzymes. The ...
 11-131 2.19e-04

DinB superfamily; The DinB family are an uncharacterized family of potential enzymes. The structure of these proteins is composed of a four helix bundle.


The actual alignment was detected with superfamily member pfam12867:

Pssm-ID: 480674  Cd Length: 128  Bit Score: 38.98  E-value: 2.19e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488283818   11 LDRAHERFEETLAQMTVAEANTMPAPLIKSVTWLMWHTARELDLQISALNHSEPlwlsqhwtekfaLDLPDETEDWHHTP 90
Cdd:pfam12867   2 LERARARLLALLEGLPDEELNWRPAPGKWSIAWLLGHLADVEEVLLARLRLGEE------------APRPAYDPGEPPSA 69

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 488283818   91 EEAAkvvvaekqllsDYLAASVALTKSYLDQIKEEQLSDVI 131
Cdd:pfam12867  70 AELL-----------AYLAAVRARLLALLAALTDADLARPV 99
 
Name Accession Description Interval E-value
DinB_2 pfam12867
DinB superfamily; The DinB family are an uncharacterized family of potential enzymes. The ...
 11-131 2.19e-04

DinB superfamily; The DinB family are an uncharacterized family of potential enzymes. The structure of these proteins is composed of a four helix bundle.


Pssm-ID: 463733  Cd Length: 128  Bit Score: 38.98  E-value: 2.19e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488283818   11 LDRAHERFEETLAQMTVAEANTMPAPLIKSVTWLMWHTARELDLQISALNHSEPlwlsqhwtekfaLDLPDETEDWHHTP 90
Cdd:pfam12867   2 LERARARLLALLEGLPDEELNWRPAPGKWSIAWLLGHLADVEEVLLARLRLGEE------------APRPAYDPGEPPSA 69

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 488283818   91 EEAAkvvvaekqllsDYLAASVALTKSYLDQIKEEQLSDVI 131
Cdd:pfam12867  70 AELL-----------AYLAAVRARLLALLAALTDADLARPV 99
 
Name Accession Description Interval E-value
DinB_2 pfam12867
DinB superfamily; The DinB family are an uncharacterized family of potential enzymes. The ...
 11-131 2.19e-04

DinB superfamily; The DinB family are an uncharacterized family of potential enzymes. The structure of these proteins is composed of a four helix bundle.


Pssm-ID: 463733  Cd Length: 128  Bit Score: 38.98  E-value: 2.19e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488283818   11 LDRAHERFEETLAQMTVAEANTMPAPLIKSVTWLMWHTARELDLQISALNHSEPlwlsqhwtekfaLDLPDETEDWHHTP 90
Cdd:pfam12867   2 LERARARLLALLEGLPDEELNWRPAPGKWSIAWLLGHLADVEEVLLARLRLGEE------------APRPAYDPGEPPSA 69

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 488283818   91 EEAAkvvvaekqllsDYLAASVALTKSYLDQIKEEQLSDVI 131
Cdd:pfam12867  70 AELL-----------AYLAAVRARLLALLAALTDADLARPV 99
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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