NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|488284032|ref|WP_002355240|]
View 

MULTISPECIES: DUF4822 domain-containing protein [Enterococcus]

Protein Classification

DUF4822 domain-containing protein( domain architecture ID 11240926)

DUF4822 domain-containing protein similar to Enterococcus faecalis lipocalin-like protein EF0375

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
DUF4822 pfam16103
Domain of unknown function (DUF4822); A lipocain-like domain found in functionally ...
 201-321 5.33e-61

Domain of unknown function (DUF4822); A lipocain-like domain found in functionally uncharacterized bacterial proteins, often as a repeat of two domains. Proteins with this domain are found in a wide range of bacteria and are often annotated as S-layer proteins, but the origin of this annotation is not clear


:

Pssm-ID: 465023  Cd Length: 121  Bit Score: 190.62  E-value: 5.33e-61
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488284032  201 DDILGATLWNGTKVLDEDGNDVTEANKMFISLAKFDNKTSKYEFFDLETGKTRGDFGYFQVIDNNKIRAHVSIGDNKYGA 280
Cdd:pfam16103   1 SEILSSTNWQGTKVYDANGNDVTLENANFIGLAKFDADTGTYEFFDLETGESRGDYGTFFVTDDGKKRTLVSEGQNLYQA 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 488284032  281 ALELTELNDKRFTYTRMGKDNNGKEIKVFVEHEPYEGDFTP 321
Cdd:pfam16103  81 VVDLTELNKDEFTYKRMGKDADGNDIEVFVEHEPYTGHPEP 121
DUF4822 pfam16103
Domain of unknown function (DUF4822); A lipocain-like domain found in functionally ...
 60-176 2.04e-59

Domain of unknown function (DUF4822); A lipocain-like domain found in functionally uncharacterized bacterial proteins, often as a repeat of two domains. Proteins with this domain are found in a wide range of bacteria and are often annotated as S-layer proteins, but the origin of this annotation is not clear


:

Pssm-ID: 465023  Cd Length: 121  Bit Score: 186.39  E-value: 2.04e-59
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488284032   60 TEILSSTDWQGTKVYDKNNNDLTAENANFIGLAKYDGETGFYEFFDKETGETRGDEGTFFVTDDGEKRILISDTQN-YQA 138
Cdd:pfam16103   1 SEILSSTNWQGTKVYDANGNDVTLENANFIGLAKFDADTGTYEFFDLETGESRGDYGTFFVTDDGKKRTLVSEGQNlYQA 80

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 488284032  139 VVDLTEVTKDKFTYKRMGKDKDGKDVEVFVEHIPYSDE 176
Cdd:pfam16103  81 VVDLTELNKDEFTYKRMGKDADGNDIEVFVEHEPYTGH 118
 
Name Accession Description Interval E-value
DUF4822 pfam16103
Domain of unknown function (DUF4822); A lipocain-like domain found in functionally ...
 201-321 5.33e-61

Domain of unknown function (DUF4822); A lipocain-like domain found in functionally uncharacterized bacterial proteins, often as a repeat of two domains. Proteins with this domain are found in a wide range of bacteria and are often annotated as S-layer proteins, but the origin of this annotation is not clear


Pssm-ID: 465023  Cd Length: 121  Bit Score: 190.62  E-value: 5.33e-61
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488284032  201 DDILGATLWNGTKVLDEDGNDVTEANKMFISLAKFDNKTSKYEFFDLETGKTRGDFGYFQVIDNNKIRAHVSIGDNKYGA 280
Cdd:pfam16103   1 SEILSSTNWQGTKVYDANGNDVTLENANFIGLAKFDADTGTYEFFDLETGESRGDYGTFFVTDDGKKRTLVSEGQNLYQA 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 488284032  281 ALELTELNDKRFTYTRMGKDNNGKEIKVFVEHEPYEGDFTP 321
Cdd:pfam16103  81 VVDLTELNKDEFTYKRMGKDADGNDIEVFVEHEPYTGHPEP 121
DUF4822 pfam16103
Domain of unknown function (DUF4822); A lipocain-like domain found in functionally ...
 60-176 2.04e-59

Domain of unknown function (DUF4822); A lipocain-like domain found in functionally uncharacterized bacterial proteins, often as a repeat of two domains. Proteins with this domain are found in a wide range of bacteria and are often annotated as S-layer proteins, but the origin of this annotation is not clear


Pssm-ID: 465023  Cd Length: 121  Bit Score: 186.39  E-value: 2.04e-59
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488284032   60 TEILSSTDWQGTKVYDKNNNDLTAENANFIGLAKYDGETGFYEFFDKETGETRGDEGTFFVTDDGEKRILISDTQN-YQA 138
Cdd:pfam16103   1 SEILSSTNWQGTKVYDANGNDVTLENANFIGLAKFDADTGTYEFFDLETGESRGDYGTFFVTDDGKKRTLVSEGQNlYQA 80

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 488284032  139 VVDLTEVTKDKFTYKRMGKDKDGKDVEVFVEHIPYSDE 176
Cdd:pfam16103  81 VVDLTELNKDEFTYKRMGKDADGNDIEVFVEHEPYTGH 118
 
Name Accession Description Interval E-value
DUF4822 pfam16103
Domain of unknown function (DUF4822); A lipocain-like domain found in functionally ...
 201-321 5.33e-61

Domain of unknown function (DUF4822); A lipocain-like domain found in functionally uncharacterized bacterial proteins, often as a repeat of two domains. Proteins with this domain are found in a wide range of bacteria and are often annotated as S-layer proteins, but the origin of this annotation is not clear


Pssm-ID: 465023  Cd Length: 121  Bit Score: 190.62  E-value: 5.33e-61
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488284032  201 DDILGATLWNGTKVLDEDGNDVTEANKMFISLAKFDNKTSKYEFFDLETGKTRGDFGYFQVIDNNKIRAHVSIGDNKYGA 280
Cdd:pfam16103   1 SEILSSTNWQGTKVYDANGNDVTLENANFIGLAKFDADTGTYEFFDLETGESRGDYGTFFVTDDGKKRTLVSEGQNLYQA 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 488284032  281 ALELTELNDKRFTYTRMGKDNNGKEIKVFVEHEPYEGDFTP 321
Cdd:pfam16103  81 VVDLTELNKDEFTYKRMGKDADGNDIEVFVEHEPYTGHPEP 121
DUF4822 pfam16103
Domain of unknown function (DUF4822); A lipocain-like domain found in functionally ...
 60-176 2.04e-59

Domain of unknown function (DUF4822); A lipocain-like domain found in functionally uncharacterized bacterial proteins, often as a repeat of two domains. Proteins with this domain are found in a wide range of bacteria and are often annotated as S-layer proteins, but the origin of this annotation is not clear


Pssm-ID: 465023  Cd Length: 121  Bit Score: 186.39  E-value: 2.04e-59
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488284032   60 TEILSSTDWQGTKVYDKNNNDLTAENANFIGLAKYDGETGFYEFFDKETGETRGDEGTFFVTDDGEKRILISDTQN-YQA 138
Cdd:pfam16103   1 SEILSSTNWQGTKVYDANGNDVTLENANFIGLAKFDADTGTYEFFDLETGESRGDYGTFFVTDDGKKRTLVSEGQNlYQA 80

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 488284032  139 VVDLTEVTKDKFTYKRMGKDKDGKDVEVFVEHIPYSDE 176
Cdd:pfam16103  81 VVDLTELNKDEFTYKRMGKDADGNDIEVFVEHEPYTGH 118
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH