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Conserved domains on  [gi|488286483|ref|WP_002357691|]
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MULTISPECIES: NAD(P)/FAD-dependent oxidoreductase [Enterococcus]

Protein Classification

NAD(P)/FAD-dependent oxidoreductase( domain architecture ID 12044987)

NAD(P)/FAD-dependent oxidoreductase catalyzes the transfer of electrons from one molecule, the electron donor or reductant, to another molecule, the electron acceptor or oxidant

CATH:  3.50.50.60
EC:  1.14.13.-
Gene Ontology:  GO:0050660|GO:0050661
SCOP:  4000073

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
HI0933_like pfam03486
HI0933-like protein;
4-413 0e+00

HI0933-like protein;


:

Pssm-ID: 427330 [Multi-domain]  Cd Length: 406  Bit Score: 543.33  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488286483    4 FDVIIVGAGTSGMMATIAAAEAGAQVLLIEKNRRVGKKLLMTGGGRCNVTN-NRPAEEIISFIPGNGKFLYSAFSQFDNY 82
Cdd:pfam03486   1 FDVIVIGGGAAGLMAAISAAKRGRRVLLIEKGKKLGRKILISGGGRCNVTNlSEEPDNFLSRYPGNPKFLKSALSRFTPW 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488286483   83 DIMNFFESNGIHLKEEDHGRMFPVTDKSKSIVDALFNRINELGVTVFTKTQVTKLLRKDDQIIGVETELEKIYAPCVVLT 162
Cdd:pfam03486  81 DFIAFFESLGVPLKEEDHGRLFPDSDKASDIVDALLNELKELGVKIRLRTRVLSVEKDDDGRFRVKTGGEELEADSLVLA 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488286483  163 TGGRTYPSTGATGDGYKLAKKMGHTISPLYPTESPIISEEPFILDKTLQGLSLQDVNLtvlnQKGKPLVNHQMDMLFTHF 242
Cdd:pfam03486 161 TGGLSWPKTGSTGFGYPLAEQFGHTIIPLRPALVPFTIDEPFLFLKRLSGISLKNVVL----SNGKGGITFRGELLFTHR 236

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488286483  243 GISGPAALRCSSFINQELTRNGNqpVTVALDVFPTKSFEEVLKNVDYMIEEQPNKVAKNAFHSLIPERLLTFYLEKLAIE 322
Cdd:pfam03486 237 GLSGPAILQLSSYWRRAILKKGG--VTLSIDLLPDLDAEELAARLEKPRGAHPKKSLKNSLAGLLPKRLAEFLLEQAGIE 314

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488286483  323 E-VPAKQLTEKQRLSFVELLKDFQFTVTKTLPLEKSFVTGGGISLKEVTPKTMESKLVNGLFFAGELLDINGYTGGYNVT 401
Cdd:pfam03486 315 PdKKLAQLSKKELAALAQLLKAWTFTPNGTEGYRTAEVTAGGVDTKELSSKTMESKKVPGLFFAGEVLDVDGWTGGYNLQ 394

                         410
                  ....*....|..
gi 488286483  402 AAFVTGHVAGSH 413
Cdd:pfam03486 395 WAWSSGYAAGQG 406
 
Name Accession Description Interval E-value
HI0933_like pfam03486
HI0933-like protein;
4-413 0e+00

HI0933-like protein;


Pssm-ID: 427330 [Multi-domain]  Cd Length: 406  Bit Score: 543.33  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488286483    4 FDVIIVGAGTSGMMATIAAAEAGAQVLLIEKNRRVGKKLLMTGGGRCNVTN-NRPAEEIISFIPGNGKFLYSAFSQFDNY 82
Cdd:pfam03486   1 FDVIVIGGGAAGLMAAISAAKRGRRVLLIEKGKKLGRKILISGGGRCNVTNlSEEPDNFLSRYPGNPKFLKSALSRFTPW 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488286483   83 DIMNFFESNGIHLKEEDHGRMFPVTDKSKSIVDALFNRINELGVTVFTKTQVTKLLRKDDQIIGVETELEKIYAPCVVLT 162
Cdd:pfam03486  81 DFIAFFESLGVPLKEEDHGRLFPDSDKASDIVDALLNELKELGVKIRLRTRVLSVEKDDDGRFRVKTGGEELEADSLVLA 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488286483  163 TGGRTYPSTGATGDGYKLAKKMGHTISPLYPTESPIISEEPFILDKTLQGLSLQDVNLtvlnQKGKPLVNHQMDMLFTHF 242
Cdd:pfam03486 161 TGGLSWPKTGSTGFGYPLAEQFGHTIIPLRPALVPFTIDEPFLFLKRLSGISLKNVVL----SNGKGGITFRGELLFTHR 236

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488286483  243 GISGPAALRCSSFINQELTRNGNqpVTVALDVFPTKSFEEVLKNVDYMIEEQPNKVAKNAFHSLIPERLLTFYLEKLAIE 322
Cdd:pfam03486 237 GLSGPAILQLSSYWRRAILKKGG--VTLSIDLLPDLDAEELAARLEKPRGAHPKKSLKNSLAGLLPKRLAEFLLEQAGIE 314

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488286483  323 E-VPAKQLTEKQRLSFVELLKDFQFTVTKTLPLEKSFVTGGGISLKEVTPKTMESKLVNGLFFAGELLDINGYTGGYNVT 401
Cdd:pfam03486 315 PdKKLAQLSKKELAALAQLLKAWTFTPNGTEGYRTAEVTAGGVDTKELSSKTMESKKVPGLFFAGEVLDVDGWTGGYNLQ 394

                         410
                  ....*....|..
gi 488286483  402 AAFVTGHVAGSH 413
Cdd:pfam03486 395 WAWSSGYAAGQG 406
YhiN COG2081
Predicted flavoprotein YhiN [General function prediction only];
7-416 1.48e-180

Predicted flavoprotein YhiN [General function prediction only];


Pssm-ID: 441684 [Multi-domain]  Cd Length: 402  Bit Score: 508.82  E-value: 1.48e-180
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488286483   7 IIVGAGTSGMMATIAAAEAGAQVLLIEKNRRVGKKLLMTGGGRCNVTNNRPAEEIISFIPGNGKFLYSAFSQFDNYDIMN 86
Cdd:COG2081    1 IVIGAGAAGLMAAITAAERGARVLLLEKNPKVGRKILISGGGRCNFTNSEPLPEFLNYYGGNPHFLKSALSRFTPEDLIA 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488286483  87 FFESNGIHLKEEDHGRMFPVTDKSKSIVDALFNRINELGVTVFTKTQVTKLLRKDDQiIGVETEL-EKIYAPCVVLTTGG 165
Cdd:COG2081   81 FFEGLGIETKEESSGRVFPDSSKASDILRALLAELREAGVEIRLRTRVTGIEKEDGG-FGVETPDgETVRADAVVLATGG 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488286483 166 RTYPSTGATGDGYKLAKKMGHTISPLYPTESPIISEEPFIldKTLQGLSLQDVNLTVlnqKGKPLVNHQMDMLFTHFGIS 245
Cdd:COG2081  160 LSYPKLGSTGDGYRLAEQFGHTITPLRPALVPLTLSEHFF--KRLAGLSLKNVALSV---GGKKIASFRGELLFTHRGLS 234

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488286483 246 GPAALRCSSFINQELtrnGNQPVTVALDVFPTKSFEEVLKNVDYMIEEQPNKVAKNAFHSLIPERLLTFYLEKLAiEEVP 325
Cdd:COG2081  235 GPAILQLSSYWRDAL---KKGGATLTIDLLPDLDLEELDARLARPREKNGKKSLKNVLRGLLPKRLAALLLELAD-PDKP 310

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488286483 326 AKQLTEKQRLSFVELLKDFQFTVTKTLPLEKSFVTGGGISLKEVTPKTMESKLVNGLFFAGELLDINGYTGGYNVTAAFV 405
Cdd:COG2081  311 LAQLSKKEREALAALLKAWPLTPTGTRGYDEAIVTAGGVDTKELDPKTMESKKVPGLYFAGEVLDVDGPTGGYNLQWAWS 390

                        410
                 ....*....|.
gi 488286483 406 TGHVAGSHAAE 416
Cdd:COG2081  391 SGYAAGQAAAA 401
TIGR00275 TIGR00275
flavoprotein, HI0933 family; The model when searched with a partial length search brings in ...
 7-412 3.68e-180

flavoprotein, HI0933 family; The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae. [Unknown function, Enzymes of unknown specificity]


Pssm-ID: 272992 [Multi-domain]  Cd Length: 400  Bit Score: 507.90  E-value: 3.68e-180
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488286483    7 IIVGAGTSGMMATIAAAEAGAQVLLIEKNRRVGKKLLMTGGGRCNVTNNRPAEEIISFIPGNGKFLYSAFSQFDNYDIMN 86
Cdd:TIGR00275   1 IIIGGGAAGLMAAITAARAGLSVLLLEKNKKIGKKLLISGGGRCNLTNSCPTPEFVAYYPRNGKFLRSALSRFSNKDLID 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488286483   87 FFESNGIHLKEEDHGRMFPVTDKSKSIVDALFNRINELGVTVFTKTQVTKlLRKDDQIIGVETELEKIYAPCVVLTTGGR 166
Cdd:TIGR00275  81 FFESLGLELKVEEDGRVFPCSDSAADVLDALLNELKELGVEILTNSKVKS-IEKEDGGFGVETSGGEYEADKVIIATGGL 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488286483  167 TYPSTGATGDGYKLAKKMGHTISPLYPTESPIISEEPFIldKTLQGLSLQDVNLTVLNqkGKPLVNHQMDMLFTHFGISG 246
Cdd:TIGR00275 160 SYPQLGSTGDGYEIAESLGHTIVPPVPALVPLTLDESFL--KELSGISLDGVVLSLVN--GKKVLEEFGELLFTHFGLSG 235

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488286483  247 PAALRCSSFINQELtrNGNQPVTVALDVFPTKSFEEVLKNVDYMIEEQPNKVAKNAFHSLIPERLLTFYLEKLAIE-EVP 325
Cdd:TIGR00275 236 PAILDLSAFAARAL--LKHKGVELEIDLLPDLSEEELEQRLKRLRKSNPKKTVKNILKGLLPKRLAELLLEQLGIDpDLP 313

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488286483  326 AKQLTEKQRLSFVELLKDFQFTVTKTLPLEKSFVTGGGISLKEVTPKTMESKLVNGLFFAGELLDINGYTGGYNVTAAFV 405
Cdd:TIGR00275 314 AAQLSKKEIKKLVQLLKNWPFTISGTRGFKEAEVTAGGVSLKEINPKTMESKLVPGLYFAGEVLDIDGDTGGYNLQWAWS 393


                  ....*..
gi 488286483  406 TGHVAGS 412
Cdd:TIGR00275 394 SGYLAGK 400
PRK06481 PRK06481
flavocytochrome c;
3-419 1.52e-11

flavocytochrome c;


Pssm-ID: 180584 [Multi-domain]  Cd Length: 506  Bit Score: 66.01  E-value: 1.52e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488286483   3 KFDVIIVGAGTSGMMATIAAAEAGAQVLLIEKNRRVGKKLLMTGGGR------------CNVTNNRPAEEIISFIPG-NG 69
Cdd:PRK06481  61 KYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVAGGNTMKASSGMnasetkfqkaqgIADSNDKFYEETLKGGGGtND 140

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488286483  70 KFLYSAFsqFDNY-DIMNFFESNGIHLKE------EDHGRMFPVTDKS---KSIVDALFNRINELGVTVFTKTQVTKLLR 139
Cdd:PRK06481 141 KALLRYF--VDNSaSAIDWLDSMGIKLDNltitggMSEKRTHRPHDGSavgGYLVDGLLKNVQERKIPLFVNADVTKITE 218

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488286483 140 KDDQIIGVETELE-----KIYAPCVVLTTGG---------------RTYPST---GATGDGYKLAKKMGHTISPLYPTE- 195
Cdd:PRK06481 219 KDGKVTGVKVKINgketkTISSKAVVVTTGGfgankdmiakyrpdlKGYVTTnqeGSTGDGIKMIEKLGGTTVDMDQIQi 298

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488286483 196 SPIISEEpfilDKTLQGLSLQDVNLTVLNQKGKPLVNhQMDmlfthfgisgpaalrcssfinqelTRNgnqpvtvaldvf 275
Cdd:PRK06481 299 HPTVQQS----KSYLIGEAVRGEGAILVNQKGKRFGN-ELD------------------------TRD------------ 337

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488286483 276 ptksfeevlkNVDYMIEEQPNKVAKNAFHSLIPERL--LTFYLEKLAIEE------------VPAKQLTEKQRL--SFVE 339
Cdd:PRK06481 338 ----------KVSAAINKLPEKYAYVVFDSGVKDRVkaIAQYEEKGFVEEgktidelakkinVPAETLTKTLDTwnKAVK 407

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488286483 340 LLKDFQFtvTKTLPLEKSFVTG---------------GGISLK---EVTPKtmESKLVNGLFFAGEL---LDINGYTGGY 398
Cdd:PRK06481 408 NKKDEAF--GRTTGMDNDLSTGpyyaikiapgihytmGGVKINtntEVLKK--DGSPITGLYAAGEVtggLHGENRIGGN 483

                        490       500
                 ....*....|....*....|.
gi 488286483 399 NVTAAFVTGHVAGSHAAEIAE 419
Cdd:PRK06481 484 SVADIIIFGRQAGTQSAEFAK 504
 
Name Accession Description Interval E-value
HI0933_like pfam03486
HI0933-like protein;
4-413 0e+00

HI0933-like protein;


Pssm-ID: 427330 [Multi-domain]  Cd Length: 406  Bit Score: 543.33  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488286483    4 FDVIIVGAGTSGMMATIAAAEAGAQVLLIEKNRRVGKKLLMTGGGRCNVTN-NRPAEEIISFIPGNGKFLYSAFSQFDNY 82
Cdd:pfam03486   1 FDVIVIGGGAAGLMAAISAAKRGRRVLLIEKGKKLGRKILISGGGRCNVTNlSEEPDNFLSRYPGNPKFLKSALSRFTPW 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488286483   83 DIMNFFESNGIHLKEEDHGRMFPVTDKSKSIVDALFNRINELGVTVFTKTQVTKLLRKDDQIIGVETELEKIYAPCVVLT 162
Cdd:pfam03486  81 DFIAFFESLGVPLKEEDHGRLFPDSDKASDIVDALLNELKELGVKIRLRTRVLSVEKDDDGRFRVKTGGEELEADSLVLA 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488286483  163 TGGRTYPSTGATGDGYKLAKKMGHTISPLYPTESPIISEEPFILDKTLQGLSLQDVNLtvlnQKGKPLVNHQMDMLFTHF 242
Cdd:pfam03486 161 TGGLSWPKTGSTGFGYPLAEQFGHTIIPLRPALVPFTIDEPFLFLKRLSGISLKNVVL----SNGKGGITFRGELLFTHR 236

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488286483  243 GISGPAALRCSSFINQELTRNGNqpVTVALDVFPTKSFEEVLKNVDYMIEEQPNKVAKNAFHSLIPERLLTFYLEKLAIE 322
Cdd:pfam03486 237 GLSGPAILQLSSYWRRAILKKGG--VTLSIDLLPDLDAEELAARLEKPRGAHPKKSLKNSLAGLLPKRLAEFLLEQAGIE 314

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488286483  323 E-VPAKQLTEKQRLSFVELLKDFQFTVTKTLPLEKSFVTGGGISLKEVTPKTMESKLVNGLFFAGELLDINGYTGGYNVT 401
Cdd:pfam03486 315 PdKKLAQLSKKELAALAQLLKAWTFTPNGTEGYRTAEVTAGGVDTKELSSKTMESKKVPGLFFAGEVLDVDGWTGGYNLQ 394

                         410
                  ....*....|..
gi 488286483  402 AAFVTGHVAGSH 413
Cdd:pfam03486 395 WAWSSGYAAGQG 406
YhiN COG2081
Predicted flavoprotein YhiN [General function prediction only];
7-416 1.48e-180

Predicted flavoprotein YhiN [General function prediction only];


Pssm-ID: 441684 [Multi-domain]  Cd Length: 402  Bit Score: 508.82  E-value: 1.48e-180
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488286483   7 IIVGAGTSGMMATIAAAEAGAQVLLIEKNRRVGKKLLMTGGGRCNVTNNRPAEEIISFIPGNGKFLYSAFSQFDNYDIMN 86
Cdd:COG2081    1 IVIGAGAAGLMAAITAAERGARVLLLEKNPKVGRKILISGGGRCNFTNSEPLPEFLNYYGGNPHFLKSALSRFTPEDLIA 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488286483  87 FFESNGIHLKEEDHGRMFPVTDKSKSIVDALFNRINELGVTVFTKTQVTKLLRKDDQiIGVETEL-EKIYAPCVVLTTGG 165
Cdd:COG2081   81 FFEGLGIETKEESSGRVFPDSSKASDILRALLAELREAGVEIRLRTRVTGIEKEDGG-FGVETPDgETVRADAVVLATGG 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488286483 166 RTYPSTGATGDGYKLAKKMGHTISPLYPTESPIISEEPFIldKTLQGLSLQDVNLTVlnqKGKPLVNHQMDMLFTHFGIS 245
Cdd:COG2081  160 LSYPKLGSTGDGYRLAEQFGHTITPLRPALVPLTLSEHFF--KRLAGLSLKNVALSV---GGKKIASFRGELLFTHRGLS 234

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488286483 246 GPAALRCSSFINQELtrnGNQPVTVALDVFPTKSFEEVLKNVDYMIEEQPNKVAKNAFHSLIPERLLTFYLEKLAiEEVP 325
Cdd:COG2081  235 GPAILQLSSYWRDAL---KKGGATLTIDLLPDLDLEELDARLARPREKNGKKSLKNVLRGLLPKRLAALLLELAD-PDKP 310

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488286483 326 AKQLTEKQRLSFVELLKDFQFTVTKTLPLEKSFVTGGGISLKEVTPKTMESKLVNGLFFAGELLDINGYTGGYNVTAAFV 405
Cdd:COG2081  311 LAQLSKKEREALAALLKAWPLTPTGTRGYDEAIVTAGGVDTKELDPKTMESKKVPGLYFAGEVLDVDGPTGGYNLQWAWS 390

                        410
                 ....*....|.
gi 488286483 406 TGHVAGSHAAE 416
Cdd:COG2081  391 SGYAAGQAAAA 401
TIGR00275 TIGR00275
flavoprotein, HI0933 family; The model when searched with a partial length search brings in ...
 7-412 3.68e-180

flavoprotein, HI0933 family; The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae. [Unknown function, Enzymes of unknown specificity]


Pssm-ID: 272992 [Multi-domain]  Cd Length: 400  Bit Score: 507.90  E-value: 3.68e-180
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488286483    7 IIVGAGTSGMMATIAAAEAGAQVLLIEKNRRVGKKLLMTGGGRCNVTNNRPAEEIISFIPGNGKFLYSAFSQFDNYDIMN 86
Cdd:TIGR00275   1 IIIGGGAAGLMAAITAARAGLSVLLLEKNKKIGKKLLISGGGRCNLTNSCPTPEFVAYYPRNGKFLRSALSRFSNKDLID 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488286483   87 FFESNGIHLKEEDHGRMFPVTDKSKSIVDALFNRINELGVTVFTKTQVTKlLRKDDQIIGVETELEKIYAPCVVLTTGGR 166
Cdd:TIGR00275  81 FFESLGLELKVEEDGRVFPCSDSAADVLDALLNELKELGVEILTNSKVKS-IEKEDGGFGVETSGGEYEADKVIIATGGL 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488286483  167 TYPSTGATGDGYKLAKKMGHTISPLYPTESPIISEEPFIldKTLQGLSLQDVNLTVLNqkGKPLVNHQMDMLFTHFGISG 246
Cdd:TIGR00275 160 SYPQLGSTGDGYEIAESLGHTIVPPVPALVPLTLDESFL--KELSGISLDGVVLSLVN--GKKVLEEFGELLFTHFGLSG 235

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488286483  247 PAALRCSSFINQELtrNGNQPVTVALDVFPTKSFEEVLKNVDYMIEEQPNKVAKNAFHSLIPERLLTFYLEKLAIE-EVP 325
Cdd:TIGR00275 236 PAILDLSAFAARAL--LKHKGVELEIDLLPDLSEEELEQRLKRLRKSNPKKTVKNILKGLLPKRLAELLLEQLGIDpDLP 313

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488286483  326 AKQLTEKQRLSFVELLKDFQFTVTKTLPLEKSFVTGGGISLKEVTPKTMESKLVNGLFFAGELLDINGYTGGYNVTAAFV 405
Cdd:TIGR00275 314 AAQLSKKEIKKLVQLLKNWPFTISGTRGFKEAEVTAGGVSLKEINPKTMESKLVPGLYFAGEVLDIDGDTGGYNLQWAWS 393


                  ....*..
gi 488286483  406 TGHVAGS 412
Cdd:TIGR00275 394 SGYLAGK 400
SdhA COG1053
Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and ...
 1-181 8.69e-15

Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]; Succinate dehydrogenase/fumarate reductase, flavoprotein subunit is part of the Pathway/BioSystem: TCA cycle


Pssm-ID: 440673 [Multi-domain]  Cd Length: 443  Bit Score: 75.64  E-value: 8.69e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488286483   1 MKKFDVIIVGAGTSGMMATIAAAEAGAQVLLIEKNRRVGKKLLMTGGGrCNVTNNRPAEEiisfiPGN------------ 68
Cdd:COG1053    1 DHEYDVVVVGSGGAGLRAALEAAEAGLKVLVLEKVPPRGGHTAAAQGG-INAAGTNVQKA-----AGEdspeehfydtvk 74

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488286483  69 -GKFLYSAfsqfDN--------YDIMNFFESNGIHLKEEDHG-----------RMFPVTDKS-KSIVDALFNRINELGVT 127
Cdd:COG1053   75 gGDGLADQ----DLvealaeeaPEAIDWLEAQGVPFSRTPDGrlpqfgghsvgRTCYAGDGTgHALLATLYQAALRLGVE 150

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 488286483 128 VFTKTQVTKLLRKDDQIIGVET-----ELEKIYAPCVVLTTGG---------------RTYPSTGA---TGDGYKLA 181
Cdd:COG1053  151 IFTETEVLDLIVDDGRVVGVVArdrtgEIVRIRAKAVVLATGGfgrnyemraeylpeaEGALSTNApgnTGDGIAMA 227
PRK06481 PRK06481
flavocytochrome c;
3-419 1.52e-11

flavocytochrome c;


Pssm-ID: 180584 [Multi-domain]  Cd Length: 506  Bit Score: 66.01  E-value: 1.52e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488286483   3 KFDVIIVGAGTSGMMATIAAAEAGAQVLLIEKNRRVGKKLLMTGGGR------------CNVTNNRPAEEIISFIPG-NG 69
Cdd:PRK06481  61 KYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVAGGNTMKASSGMnasetkfqkaqgIADSNDKFYEETLKGGGGtND 140

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488286483  70 KFLYSAFsqFDNY-DIMNFFESNGIHLKE------EDHGRMFPVTDKS---KSIVDALFNRINELGVTVFTKTQVTKLLR 139
Cdd:PRK06481 141 KALLRYF--VDNSaSAIDWLDSMGIKLDNltitggMSEKRTHRPHDGSavgGYLVDGLLKNVQERKIPLFVNADVTKITE 218

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488286483 140 KDDQIIGVETELE-----KIYAPCVVLTTGG---------------RTYPST---GATGDGYKLAKKMGHTISPLYPTE- 195
Cdd:PRK06481 219 KDGKVTGVKVKINgketkTISSKAVVVTTGGfgankdmiakyrpdlKGYVTTnqeGSTGDGIKMIEKLGGTTVDMDQIQi 298

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488286483 196 SPIISEEpfilDKTLQGLSLQDVNLTVLNQKGKPLVNhQMDmlfthfgisgpaalrcssfinqelTRNgnqpvtvaldvf 275
Cdd:PRK06481 299 HPTVQQS----KSYLIGEAVRGEGAILVNQKGKRFGN-ELD------------------------TRD------------ 337

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488286483 276 ptksfeevlkNVDYMIEEQPNKVAKNAFHSLIPERL--LTFYLEKLAIEE------------VPAKQLTEKQRL--SFVE 339
Cdd:PRK06481 338 ----------KVSAAINKLPEKYAYVVFDSGVKDRVkaIAQYEEKGFVEEgktidelakkinVPAETLTKTLDTwnKAVK 407

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488286483 340 LLKDFQFtvTKTLPLEKSFVTG---------------GGISLK---EVTPKtmESKLVNGLFFAGEL---LDINGYTGGY 398
Cdd:PRK06481 408 NKKDEAF--GRTTGMDNDLSTGpyyaikiapgihytmGGVKINtntEVLKK--DGSPITGLYAAGEVtggLHGENRIGGN 483

                        490       500
                 ....*....|....*....|.
gi 488286483 399 NVTAAFVTGHVAGSHAAEIAE 419
Cdd:PRK06481 484 SVADIIIFGRQAGTQSAEFAK 504
NadB COG0029
Aspartate oxidase [Coenzyme transport and metabolism]; Aspartate oxidase is part of the ...
 111-181 1.20e-07

Aspartate oxidase [Coenzyme transport and metabolism]; Aspartate oxidase is part of the Pathway/BioSystem: NAD biosynthesis


Pssm-ID: 439800 [Multi-domain]  Cd Length: 521  Bit Score: 53.57  E-value: 1.20e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488286483 111 KSIVDALFNRINEL-GVTVFTKTQVTKLLR-KDDQIIGV------ETELEKIYAPCVVLTTGG--RTYPST----GATGD 176
Cdd:COG0029  130 REIERALLEAVRAHpNITVLENHFAVDLITdADGRCVGAyvldekTGEVETIRAKAVVLATGGagQLYAYTtnpdVATGD 209


                 ....*
gi 488286483 177 GYKLA 181
Cdd:COG0029  210 GIAMA 214
FAD_binding_2 pfam00890
FAD binding domain; This family includes members that bind FAD. This family includes the ...
 5-233 2.40e-06

FAD binding domain; This family includes members that bind FAD. This family includes the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase.


Pssm-ID: 395718 [Multi-domain]  Cd Length: 398  Bit Score: 49.21  E-value: 2.40e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488286483    5 DVIIVGAGTSGMMATIAAAEAGAQVLLIEKNRRVGKKLLMTGGGrCNVTNNRPAEEIISFIpgngKFLYSAFSQFDNY-- 82
Cdd:pfam00890   1 DVLVIGGGLAGLAAALAAAEAGLKVAVVEKGQPFGGATAWSSGG-IDALGNPPQGGIDSPE----LHPTDTLKGLDELad 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488286483   83 ------------DIMNFFESNGIHLKEEDHGR---------------MFPVTDKS------KSIVDALFNRINELGVTVF 129
Cdd:pfam00890  76 hpyveafveaapEAVDWLEALGVPFSRTEDGHldlrplgglsatwrtPHDAADRRrglgtgHALLARLLEGLRKAGVDFQ 155

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488286483  130 TKTQVTKLLRKDDQIIGVE------TELEKIYAPC-VVLTTGGR-----------TYPST----GATGDGYKLAKKMGHT 187
Cdd:pfam00890 156 PRTAADDLIVEDGRVTGAVvenrrnGREVRIRAIAaVLLATGGFgrlaelllpaaGYADTtnppANTGDGLALALRAGAA 235

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|...
gi 488286483  188 ISPLY-------PTESPIISEEPFILDKTLQGLSlqdvnLTVLNQKGKPLVNH 233
Cdd:pfam00890 236 LTDDLmefvqfhPTSLVGIRLGSGLLIEALRGEG-----GILVNKDGRRFMNE 283
DadA COG0665
Glycine/D-amino acid oxidase (deaminating) [Amino acid transport and metabolism];
114-193 2.44e-06

Glycine/D-amino acid oxidase (deaminating) [Amino acid transport and metabolism];


Pssm-ID: 440429 [Multi-domain]  Cd Length: 364  Bit Score: 49.13  E-value: 2.44e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488286483 114 VDALFNRINELGVTVFTKTQVTKLLRKDDQIIGVETELEKIYAPCVVLTTGGRTypstgatgdgYKLAKKMGHTIsPLYP 193
Cdd:COG0665  154 VRALARAARAAGVRIREGTPVTGLEREGGRVTGVRTERGTVRADAVVLAAGAWS----------ARLLPMLGLRL-PLRP 222
PRK10157 PRK10157
putative oxidoreductase FixC; Provisional
 4-164 4.97e-06

putative oxidoreductase FixC; Provisional


Pssm-ID: 182273 [Multi-domain]  Cd Length: 428  Bit Score: 48.37  E-value: 4.97e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488286483   4 FDVIIVGAGTSGMMATIAAAEAGAQVLLIEKNRRVGKKllmtgggrcNVTNNRP-AEEIISFIPGngkFLYSA-FSQFDN 81
Cdd:PRK10157   6 FDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAK---------NVTGGRLyAHSLEHIIPG---FADSApVERLIT 73

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488286483  82 YDIMNFFESNGI----HLKEEDH---GRMFPVTdksKSIVDA-LFNRINELGVTVFTKTQVTKLLRKDDQIIGVETELEK 153
Cdd:PRK10157  74 HEKLAFMTEKSAmtmdYCNGDETspsQRSYSVL---RSKFDAwLMEQAEEAGAQLITGIRVDNLVQRDGKVVGVEADGDV 150

                        170
                 ....*....|.
gi 488286483 154 IYAPCVVLTTG 164
Cdd:PRK10157 151 IEAKTVILADG 161
COG1233 COG1233
Phytoene dehydrogenase-related protein [Secondary metabolites biosynthesis, transport and ...
 110-163 5.10e-06

Phytoene dehydrogenase-related protein [Secondary metabolites biosynthesis, transport and catabolism];


Pssm-ID: 440846 [Multi-domain]  Cd Length: 491  Bit Score: 48.69  E-value: 5.10e-06
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 488286483 110 SKSIVDALFNRINELGVTVFTKTQVTKLLRKDDQIIGVETE-LEKIYAPCVVLTT 163
Cdd:COG1233  221 MGALADALARLAEELGGEIRTGAEVERILVEGGRATGVRLAdGEEIRADAVVSNA 275
GG-red-SF TIGR02032
geranylgeranyl reductase family; This model represents a subfamily which includes ...
 4-186 9.64e-05

geranylgeranyl reductase family; This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates. [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]


Pssm-ID: 273936 [Multi-domain]  Cd Length: 295  Bit Score: 43.85  E-value: 9.64e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488286483    4 FDVIIVGAGTSGMMATIAAAEAGAQVLLIEKNRRVGKKLlmTGGG---RCNVTNNRPAEEIISfiPGNGKFLYSAFSQFD 80
Cdd:TIGR02032   1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRYKP--CGGAlspRALEELDLPGELIVN--LVRGARFFSPNGDSV 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488286483   81 NYDImnffesngihlkEEDHGRMFPVTDKSKSIVDalfnRINELGVTVFTKTQVTKLLRKDDQI-IGVETELEKIYAPCV 159
Cdd:TIGR02032  77 EIPI------------ETELAYVIDRDAFDEQLAE----RAQEAGAELRLGTRVLDVEIHDDRVvVIVRGSEGTVTAKIV 140

                         170       180
                  ....*....|....*....|....*..
gi 488286483  160 VlttggrtypstGATGDGYKLAKKMGH 186
Cdd:TIGR02032 141 I-----------GADGSRSIVAKKLGL 156
MnmG COG0445
tRNA U34 5-carboxymethylaminomethyl modifying enzyme MnmG/GidA [Translation, ribosomal ...
 134-168 1.58e-04

tRNA U34 5-carboxymethylaminomethyl modifying enzyme MnmG/GidA [Translation, ribosomal structure and biogenesis]; tRNA U34 5-carboxymethylaminomethyl modifying enzyme MnmG/GidA is part of the Pathway/BioSystem: tRNA modification


Pssm-ID: 440214 [Multi-domain]  Cd Length: 626  Bit Score: 43.84  E-value: 1.58e-04
                         10        20        30
                 ....*....|....*....|....*....|....*.
gi 488286483 134 VTKLLRKDDQIIGVETEL-EKIYAPCVVLTTGgrTY 168
Cdd:COG0445  125 VEDLIVEDGRVTGVVTADgIEFRAKAVVLTTG--TF 158
PRK08274 PRK08274
FAD-dependent tricarballylate dehydrogenase TcuA;
1-165 2.39e-04

FAD-dependent tricarballylate dehydrogenase TcuA;


Pssm-ID: 236214 [Multi-domain]  Cd Length: 466  Bit Score: 43.33  E-value: 2.39e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488286483   1 MKKFDVIIVGAGTSGMMATIAAAEAGAQVLLIEK--------NRRVGKKL-LMTGGGRCNVTNNRPAEE----IISFIPG 67
Cdd:PRK08274   2 ASMVDVLVIGGGNAALCAALAAREAGASVLLLEAaprewrggNSRHTRNLrCMHDAPQDVLVGAYPEEEfwqdLLRVTGG 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488286483  68 NGKflySAFSQF---DNYDIMNFFESNGIHLKEEDHGRMFPVTDKS------KSIVDALFNRINELGVTVFTKTQVTKLL 138
Cdd:PRK08274  82 RTD---EALARLlirESSDCRDWMRKHGVRFQPPLSGALHVARTNAffwgggKALVNALYRSAERLGVEIRYDAPVTALE 158

                        170       180       190
                 ....*....|....*....|....*....|..
gi 488286483 139 RKDDQIIGVET-----ELEKIYAPCVVLTTGG 165
Cdd:PRK08274 159 LDDGRFVGARAgsaagGAERIRAKAVVLAAGG 190
FAD_oxidored pfam12831
FAD dependent oxidoreductase; This family of proteins contains FAD dependent oxidoreductases ...
 5-177 2.88e-04

FAD dependent oxidoreductase; This family of proteins contains FAD dependent oxidoreductases and related proteins.


Pssm-ID: 432816 [Multi-domain]  Cd Length: 420  Bit Score: 42.98  E-value: 2.88e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488286483    5 DVIIVGAGTSGMMATIAAAEAGAQVLLIEKNRRVGKklLMTGGGRCNVTNNRPAEEIIsfIPGngkfLYSAFSQfdnydi 84
Cdd:pfam12831   1 DVVVVGGGPAGVAAAIAAARAGAKVLLVERRGFLGG--MLTSGLVGPDMGFYLNKEQV--VGG----IAREFRQ------ 66

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488286483   85 mnffesngiHLKEEDHGRMFPVTDKSKSIVD------ALFNRINELGVTVFTKTQVTKLLRKDDQIIGVETE----LEKI 154
Cdd:pfam12831  67 ---------RLRARGGLPGPYGLRGGWVPFDpevakaVLDEMLAEAGVTVLLHTRVVGVVKEGGRITGVTVEtkggRITI 137

                         170       180
                  ....*....|....*....|...
gi 488286483  155 YAPCVVlttggrtypstGATGDG 177
Cdd:pfam12831 138 RAKVFI-----------DATGDG 149
FixC COG0644
Dehydrogenase (flavoprotein) [Energy production and conversion];
28-195 4.27e-04

Dehydrogenase (flavoprotein) [Energy production and conversion];


Pssm-ID: 440409 [Multi-domain]  Cd Length: 281  Bit Score: 41.88  E-value: 4.27e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488286483  28 QVLLIEKNRRVGKKLLmtGGGrcnvTNNRPAEEIisFIPGNGKFLYSAFSQFdnydimnffesnGIHLKEEDHGRMFPVT 107
Cdd:COG0644   18 SVLLLEKGSFPGDKIC--GGG----LLPRALEEL--EPLGLDEPLERPVRGA------------RFYSPGGKSVELPPGR 77

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488286483 108 DKSkSIVD------ALFNRINELGVTVFTKTQVTKLLRKDDQIIgVETE-LEKIYAPCVVlttggrtypstGATGDGYKL 180
Cdd:COG0644   78 GGG-YVVDrarfdrWLAEQAEEAGAEVRTGTRVTDVLRDDGRVV-VRTGdGEEIRADYVV-----------DADGARSLL 144

                        170
                 ....*....|....*
gi 488286483 181 AKKMGHTISPLYPTE 195
Cdd:COG0644  145 ARKLGLKRRSDEPQD 159
GIDA pfam01134
Glucose inhibited division protein A;
373-415 5.64e-04

Glucose inhibited division protein A;


Pssm-ID: 250388 [Multi-domain]  Cd Length: 391  Bit Score: 41.77  E-value: 5.64e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 488286483  373 TMESKLVNGLFFAGellDINGyTGGYnvTAAFVTGHVAGSHAA 415
Cdd:pfam01134 348 TLETKKIPGLFFAG---QING-TEGY--EEAAAQGLLAGINAA 384
sdhA PRK06263
succinate dehydrogenase flavoprotein subunit; Reviewed
 113-185 9.90e-04

succinate dehydrogenase flavoprotein subunit; Reviewed


Pssm-ID: 235758 [Multi-domain]  Cd Length: 543  Bit Score: 41.51  E-value: 9.90e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488286483 113 IVDALFNRINELGVTVFTKTQVTKLLRKDD-QIIG------VETELEKIYAPCVVLTTGG--RTYP----STGATGDGYK 179
Cdd:PRK06263 136 MMMGLMEYLIKERIKILEEVMAIKLIVDENrEVIGaifldlRNGEIFPIYAKATILATGGagQLYPitsnPIQKTGDGFA 215


                 ....*.
gi 488286483 180 LAKKMG 185
Cdd:PRK06263 216 IAYRAG 221
sdhA PRK07803
succinate dehydrogenase flavoprotein subunit; Reviewed
 123-188 1.10e-03

succinate dehydrogenase flavoprotein subunit; Reviewed


Pssm-ID: 236101 [Multi-domain]  Cd Length: 626  Bit Score: 41.17  E-value: 1.10e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 488286483 123 ELGVTVFTKTQVTKLLRKDDQIIGV-----ET-ELEKIYAPCVVLTTG--GRTYPSTG----ATGDGYKLAKKMGHTI 188
Cdd:PRK07803 163 EARIKVFAECTITELLKDGGRIAGAfgywrESgRFVLFEAPAVVLATGgiGKSFKVTSnsweYTGDGHALALRAGATL 240
PRK08071 PRK08071
L-aspartate oxidase; Provisional
 111-185 1.55e-03

L-aspartate oxidase; Provisional


Pssm-ID: 236147 [Multi-domain]  Cd Length: 510  Bit Score: 40.74  E-value: 1.55e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488286483 111 KSIVDALFNRINElGVTVFTKTQVTKLLRKDDQIIGVET-----ELEKIYAPCVVLTTGG--RTYPSTG----ATGDGYK 179
Cdd:PRK08071 130 KNLLEHLLQELVP-HVTVVEQEMVIDLIIENGRCIGVLTkdsegKLKRYYADYVVLASGGcgGLYAFTSndktITGDGLA 208


                 ....*.
gi 488286483 180 LAKKMG 185
Cdd:PRK08071 209 MAYRAG 214
PRK00711 PRK00711
D-amino acid dehydrogenase;
92-193 2.56e-03

D-amino acid dehydrogenase;


Pssm-ID: 234819 [Multi-domain]  Cd Length: 416  Bit Score: 39.78  E-value: 2.56e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488286483  92 GIHLKEEDHG--RMFPVtdksksivdALFNRINELGVTVFTKTQVTKLLRKDDQIIGVETELEKIYAPCVVLTTGgrTYp 169
Cdd:PRK00711 189 GLRLPNDETGdcQLFTQ---------RLAAMAEQLGVKFRFNTPVDGLLVEGGRITGVQTGGGVITADAYVVALG--SY- 256

                         90       100
                 ....*....|....*....|....
gi 488286483 170 STGatgdgykLAKKMGHTIsPLYP 193
Cdd:PRK00711 257 STA-------LLKPLGVDI-PVYP 272
DAO pfam01266
FAD dependent oxidoreductase; This family includes various FAD dependent oxidoreductases: ...
 5-165 2.59e-03

FAD dependent oxidoreductase; This family includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase EC:1.1.99.5, Sarcosine oxidase beta subunit EC:1.5.3.1, D-alanine oxidase EC:1.4.99.1, D-aspartate oxidase EC:1.4.3.1.


Pssm-ID: 426168 [Multi-domain]  Cd Length: 339  Bit Score: 39.69  E-value: 2.59e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488286483    5 DVIIVGAGTSGMMATIAAAEAGAQVLLIEKNRRVGK-------KLLMTGGGrcnvtnNRPAEEIISF------------- 64
Cdd:pfam01266   1 DVVVIGGGIVGLSTAYELARRGLSVTLLERGDDPGSgasgrnaGLIHPGLR------YLEPSELARLalealdlweelee 74

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488286483   65 -------IPGNGKfLYSAFSQFDNY--DIMNFFESNGIH---LKEEDHGRMFPVTDKSKS--------------IVDALF 118
Cdd:pfam01266  75 elgidcgFRRCGV-LVLARDEEEEAleKLLAALRRLGVPaelLDAEELRELEPLLPGLRGglfypdgghvdparLLRALA 153

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*..
gi 488286483  119 NRINELGVTVFTKTQVTKLLRKDDqIIGVETELEkiyAPCVVLTTGG 165
Cdd:pfam01266 154 RAAEALGVRIIEGTEVTGIEEEGG-VWGVVTTGE---ADAVVNAAGA 196
MnmG COG0445
tRNA U34 5-carboxymethylaminomethyl modifying enzyme MnmG/GidA [Translation, ribosomal ...
 373-415 3.84e-03

tRNA U34 5-carboxymethylaminomethyl modifying enzyme MnmG/GidA [Translation, ribosomal structure and biogenesis]; tRNA U34 5-carboxymethylaminomethyl modifying enzyme MnmG/GidA is part of the Pathway/BioSystem: tRNA modification


Pssm-ID: 440214 [Multi-domain]  Cd Length: 626  Bit Score: 39.60  E-value: 3.84e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|...
gi 488286483 373 TMESKLVNGLFFAGElldINGyTGGYNVTAAfvTGHVAGSHAA 415
Cdd:COG0445  355 TLETKKIEGLFFAGQ---ING-TTGYEEAAA--QGLMAGINAA 391
PTZ00306 PTZ00306
NADH-dependent fumarate reductase; Provisional
 126-232 4.00e-03

NADH-dependent fumarate reductase; Provisional


Pssm-ID: 140327 [Multi-domain]  Cd Length: 1167  Bit Score: 39.76  E-value: 4.00e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488286483  126 VTVFTKTQVTKLLRKDD-----------------QIIGVETELEKIYAPCVVLTTGG----RT--------------YPS 170
Cdd:PTZ00306  562 VTIMTETTVTSLLSESSarpdgvreirvtgvrykQASDASGQVMDLLADAVILATGGfsndHTpnsllreyapqlsgFPT 641

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488286483  171 TG---ATGDGYKLAKKMGHTI-----SPLYPTeSPIISEEPFILDKTLQGLSLQDVNLTVLNQKGKPLVN 232
Cdd:PTZ00306  642 TNgpwATGDGVKLARKLGATLvdmdkVQLHPT-GLIDPKDPSNRTKYLGPEALRGSGGVLLNKNGERFVN 710
PRK07233 PRK07233
hypothetical protein; Provisional
 110-163 9.54e-03

hypothetical protein; Provisional


Pssm-ID: 235977 [Multi-domain]  Cd Length: 434  Bit Score: 37.94  E-value: 9.54e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....
gi 488286483 110 SKSIVDALFNRINELGVTVFTKTQVTKLLRKDDQIIGVETELEKIYAPCVVLTT 163
Cdd:PRK07233 197 FATLIDALAEAIEARGGEIRLGTPVTSVVIDGGGVTGVEVDGEEEDFDAVISTA 250
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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