|
Name |
Accession |
Description |
Interval |
E-value |
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
137-402 |
1.29e-19 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 88.25 E-value: 1.29e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488356494 137 QFALGELYFTNGQFVEAITRYQSIVESGTAQISAislNERLGSSYSMLGDFEEAVPYLEAAVK-EEQTDDRLFQLAFTYL 215
Cdd:COG2956 11 WYFKGLNYLLNGQPDKAIDLLEEALELDPETVEA---HLALGNLYRRRGEYDRAIRIHQKLLErDPDRAEALLELAQDYL 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488356494 216 QLHENQKAIALFQQLKTLNPHYQSLYLYLAKALQEEEQLEEAKAVIEEGIAENPFQVELYQFASENAYRLHDIAGAENWL 295
Cdd:COG2956 88 KAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEAL 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488356494 296 LKALELGEKTDESRLTLSNLYITEERFEEVITILNDLEETDHPYAEW--NLAKAYNELEDFAVAKVHYEQAAqELSHEPE 373
Cdd:COG2956 168 EKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPAlpRLAELYEKLGDPEEALELLRKAL-ELDPSDD 246
|
250 260
....*....|....*....|....*....
gi 488356494 374 FLKEYALFLREEGELEKAKHLLHHYLEHE 402
Cdd:COG2956 247 LLLALADLLERKEGLEAALALLERQLRRH 275
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
11-230 |
2.25e-18 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 84.40 E-value: 2.25e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488356494 11 LQAENLAEAQLMFEEALKKDDENTLA--DLGETLLSLGFLEEAKQIFQQLLEQFPDADGLNIPLAEIAIENNEIDDAFIY 88
Cdd:COG2956 53 RRRGEYDRAIRIHQKLLERDPDRAEAllELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEV 132
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488356494 89 LEKIPETSDSYVQSLLVTADLYQVLGIPEVSEAKLKEAANLMPEEPLIQFALGELYFTNGQFVEAITRYQSIVESGTAQI 168
Cdd:COG2956 133 LERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYL 212
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 488356494 169 SAIslnERLGSSYSMLGDFEEAVPYLEAAVKEEQTDDRLFQLAFTYLQLHENQKAIALFQQL 230
Cdd:COG2956 213 PAL---PRLAELYEKLGDPEEALELLRKALELDPSDDLLLALADLLERKEGLEAALALLERQ 271
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
38-332 |
2.50e-18 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 84.40 E-value: 2.50e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488356494 38 LGETLLSLGFLEEAKQIFQQLLEQFPDADGLNIPLAEIAIENNEIDDAFIYLEKipetsdsyvqsllvtadlyqvlgipe 117
Cdd:COG2956 14 KGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQK-------------------------- 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488356494 118 vseaklkeAANLMPEEPLIQFALGELYFTNGQFVEAITRYQSIVESGTAQISAIslnERLGSSYSMLGDFEEAVPYLEAA 197
Cdd:COG2956 68 --------LLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEAL---RLLAEIYEQEGDWEKAIEVLERL 136
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488356494 198 VKEEQTDDR-LFQLAFTYLQLHENQKAIALFQQLKTLNPHYQSLYLYLAKALQEEEQLEEAKAVIEEGIAENPFQVELYQ 276
Cdd:COG2956 137 LKLGPENAHaYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALP 216
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*.
gi 488356494 277 FASENAYRLHDIAGAENWLLKALELGEKTDEsRLTLSNLYITEERFEEVITILNDL 332
Cdd:COG2956 217 RLAELYEKLGDPEEALELLRKALELDPSDDL-LLALADLLERKEGLEAALALLERQ 271
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
8-268 |
2.98e-17 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 81.31 E-value: 2.98e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488356494 8 VQALQAENLAEAQLMFEEALKKDDEN--TLADLGETLLSLGFLEEAKQIFQQLLEQFPDADGLNIPLAEIAIENNEIDDA 85
Cdd:COG2956 16 LNYLLNGQPDKAIDLLEEALELDPETveAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRA 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488356494 86 FIYLEKIPETSDSYVQSLLVTADLYQVLGIPEVSEAKLKEAANLMPEEPLIQFALGELYFTNGQFVEAITRYQSIVEsgt 165
Cdd:COG2956 96 EELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALK--- 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488356494 166 AQISAISLNERLGSSYSMLGDFEEAVPYLEAAVKEEQTDDR-LFQLAFTYLQLHENQKAIALFQQLKTLNPhYQSLYLYL 244
Cdd:COG2956 173 LDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPaLPRLAELYEKLGDPEEALELLRKALELDP-SDDLLLAL 251
|
250 260
....*....|....*....|....
gi 488356494 245 AKALQEEEQLEEAKAVIEEGIAEN 268
Cdd:COG2956 252 ADLLERKEGLEAALALLERQLRRH 275
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
25-413 |
1.29e-16 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 82.05 E-value: 1.29e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488356494 25 EALKKDDENTLADLGETLLSLGFLEEAKQIFQQLLEQFPDADGLNIPLAEIAIENNEIDDAFIYLEKIPETSDSYVQSLL 104
Cdd:TIGR02917 458 EKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAIL 537
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488356494 105 VTADLYQVLGIPEVSEAKLKEAANLMPEEPLIQFALGELYFTNGQFVEAITRYQSIVESGTAQISAISLnerLGSSYSML 184
Cdd:TIGR02917 538 ALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLM---LGRAQLAA 614
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488356494 185 GDFEEAVPYLEAAVKEE-QTDDRLFQLAFTYLQLHENQKAIALFQQLKTLNPHYQSLYLYLAKALQEEEQLEEAKAVIEE 263
Cdd:TIGR02917 615 GDLNKAVSSFKKLLALQpDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKS 694
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488356494 264 GIAENPFQVELYQFASENAYRLHDIAGAENWLLKALEL----------------------GEKTDES-----------RL 310
Cdd:TIGR02917 695 LQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRapssqnaiklhrallasgntaeAVKTLEAwlkthpndavlRT 774
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488356494 311 TLSNLYITEERFEEVITILNDLEET--DHPYAEWNLAKAYNELEDfAVAKVHYEQAAQELSHEPEFLKEYALFLREEGEL 388
Cdd:TIGR02917 775 ALAELYLAQKDYDKAIKHYQTVVKKapDNAVVLNNLAWLYLELKD-PRALEYAERALKLAPNIPAILDTLGWLLVEKGEA 853
|
410 420
....*....|....*....|....*
gi 488356494 389 EKAKHLLHHYLEHEPGDVDMQSVLA 413
Cdd:TIGR02917 854 DRALPLLRKAVNIAPEAAAIRYHLA 878
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
3-416 |
4.38e-15 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 77.43 E-value: 4.38e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488356494 3 YSEKMVQaLQAENLAEAQLMFEEALKKDDENTLADL--GETLLSLGFLEEAKQIFQQLLEQFPDADGLNIPLAEIAIENN 80
Cdd:TIGR02917 265 YLKALVD-FQKKNYEDARETLQDALKSAPEYLPALLlaGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLG 343
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488356494 81 EIDDAFIYLEKIPETSDSYVQSLLVTADLYQVLGIPEVSEAKLKEAANLMPEEPLIQFALGELYFTNGQFVEAITRYQSI 160
Cdd:TIGR02917 344 RVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETA 423
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488356494 161 VESGTAQISAISLnerLGSSYSMLGDFEEAVPYLEAAVKEEQTDDRLFQL-AFTYLQLHENQKAIALFQQLKTLNPHYQS 239
Cdd:TIGR02917 424 AQLDPELGRADLL---LILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLlGAIYLGKGDLAKAREAFEKALSIEPDFFP 500
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488356494 240 LYLYLAKALQEEEQLEEAKAVIEEGIAENPFQVELYQFASENAYRLHDIAGAENWLLKALELGEKTDESRLTLSNLYITE 319
Cdd:TIGR02917 501 AAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGK 580
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488356494 320 ERFEEVITILNDLEET--DHPYAEWNLAKAYNELEDFAVAKVHYEQAAQELSHEPEFLKEYALFLREEGELEKAKHLLHH 397
Cdd:TIGR02917 581 GQLKKALAILNEAADAapDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKR 660
|
410
....*....|....*....
gi 488356494 398 YLEHEPGDVDMQSVLADME 416
Cdd:TIGR02917 661 ALELKPDNTEAQIGLAQLL 679
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
177-418 |
4.31e-14 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 72.07 E-value: 4.31e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488356494 177 LGSSYSMLGDFEEAVPYLEAAVKEE-QTDDRLFQLAFTYLQLHENQKAIALFQQLKTLNPHYQSLYLYLAKALQEEEQLE 255
Cdd:COG2956 14 KGLNYLLNGQPDKAIDLLEEALELDpETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLD 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488356494 256 EAKAVIEEGIAENPFQVELYQFASENAYRLHDIAGAENWLLKALELGEKTDESRLTLSNLYITEERFEEVITILNDLEET 335
Cdd:COG2956 94 RAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKL 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488356494 336 D--HPYAEWNLAKAYNELEDFAVAKVHYEQAAQELSHEPEFLKEYALFLREEGELEKAKHLLHHYLEHEPGDvDMQSVLA 413
Cdd:COG2956 174 DpdCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSD-DLLLALA 252
|
....*
gi 488356494 414 DMEER 418
Cdd:COG2956 253 DLLER 257
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
15-414 |
1.03e-13 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 73.19 E-value: 1.03e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488356494 15 NLAEAQLMFEEALKKDDENTLAD--LGETLLSLGFLEEAKQIFQQLLEQFPDADGLNIPLAEIAIENNEIDDAFIYLEKI 92
Cdd:TIGR02917 310 NLEQAYQYLNQILKYAPNSHQARrlLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKA 389
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488356494 93 PETSDSYVQSLLVTADLYQVLGIPEVSEAKLKEAANLMPEEPLIQFALGELYFTNGQFVEAITRYQSIVESGTAQISAIS 172
Cdd:TIGR02917 390 TELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHN 469
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488356494 173 LnerLGSSYSMLGDFEEAVPYLEAAVKEEQTDdrlFQLAFTYLQLHENQK----AIALFQQLKTLNPHYQSLYLYLAKAL 248
Cdd:TIGR02917 470 L---LGAIYLGKGDLAKAREAFEKALSIEPDF---FPAAANLARIDIQEGnpddAIQRFEKVLTIDPKNLRAILALAGLY 543
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488356494 249 QEEEQLEEAKAVIEEGIAENPFQVELYQFASENAYRLHDIAGAENWLLKALELGEKTDESRLTLSNLYITEERFEEVITI 328
Cdd:TIGR02917 544 LRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSS 623
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488356494 329 LNDLEE--TDHPYAEWNLAKAYNELEDFAVAKVHYEQAAQELSHEPEFLKEYALFLREEGELEKAKHLLHHYLEHEPGDV 406
Cdd:TIGR02917 624 FKKLLAlqPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAA 703
|
....*...
gi 488356494 407 DMQSVLAD 414
Cdd:TIGR02917 704 LGFELEGD 711
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
208-414 |
9.12e-13 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 68.22 E-value: 9.12e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488356494 208 FQLAFTYLQLHENQKAIALFQQLKTLNPHYQSLYLYLAKALQEEEQLEEAKAVIEEGIAENPFQVELYQFASENAYRLHD 287
Cdd:COG2956 12 YFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGL 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488356494 288 IAGAENWLLKALELGEKTDESRLTLSNLYITEERFEEVITILNDLEETDHPYAEW--NLAKAYNELEDFAVAKVHYEQAA 365
Cdd:COG2956 92 LDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAycELAELYLEQGDYDEAIEALEKAL 171
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 488356494 366 QELSHEPEFLKEYALFLREEGELEKAKHLLHHYLEHEPGDVDMQSVLAD 414
Cdd:COG2956 172 KLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAE 220
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
8-240 |
4.73e-12 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 67.71 E-value: 4.73e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488356494 8 VQALQAENLAEAQLMFEEALKKDDENTLADLGETLLSLGFLEEAKQIFQQLLEQFPDADGLNIPLAEIA-------IENN 80
Cdd:COG3914 13 AAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLelaalllQALG 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488356494 81 EIDDAFIYLEKIPETSDSYVQSLLVTADLYQVLGIPEVSEAKLKEAANLMPEEPLIQFALGELYFTNGQFVEAITRYQSI 160
Cdd:COG3914 93 RYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRA 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488356494 161 VESGTAQISAISLnerLGSSYSMLGDFEEAVPYLEAAVKEEQTDDRLFQ-LAFTYLQLHENQKAIALFQQLKTLNPHYQS 239
Cdd:COG3914 173 LELDPDNAEALNN---LGNALQDLGRLEEAIAAYRRALELDPDNADAHSnLLFALRQACDWEVYDRFEELLAALARGPSE 249
|
.
gi 488356494 240 L 240
Cdd:COG3914 250 L 250
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
209-410 |
1.69e-11 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 66.17 E-value: 1.69e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488356494 209 QLAFTYLQLHENQKAIALFQQLKTLNPHYQSLYLYLAKALQEEEQLEEA---------KAVIEEGIAENPFQVELYQFAS 279
Cdd:COG3914 6 LLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAaaaallalaAGEAAAAAAALLLLAALLELAA 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488356494 280 ENAYRLHDIAGAENWLLKALELGEKTDESRLTLSNLYITEERFEEVITILNDLEETDHPYAEW--NLAKAYNELEDFAVA 357
Cdd:COG3914 86 LLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAylNLGEALRRLGRLEEA 165
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 488356494 358 KVHYEQAAQELSHEPEFLKEYALFLREEGELEKAKHLLHHYLEHEPGDVDMQS 410
Cdd:COG3914 166 IAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHS 218
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
35-418 |
5.50e-11 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 64.72 E-value: 5.50e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488356494 35 LADLGETLLSLGFLEEAKQIFQQLLEQFPDADGLNIPLAEIAIENNEIDDAFIYLEKIPETSDSYVQSLLVTADLYQVLG 114
Cdd:TIGR02917 128 LALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLG 207
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488356494 115 IPEVSEAKLKEAANLMPE----------------------------------EPLIQFALGELYFTNGQFVEAITRYQSI 160
Cdd:TIGR02917 208 NIELALAAYRKAIALRPNniavllalatilieagefeeaekhadallkkapnSPLAHYLKALVDFQKKNYEDARETLQDA 287
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488356494 161 VESGTAQISAISLnerLGSSYSMLGDFEEAVPYLEAAVKEEQTDD---RLfqLAFTYLQLHENQKAIALFQQLKTLNPHY 237
Cdd:TIGR02917 288 LKSAPEYLPALLL---AGASEYQLGNLEQAYQYLNQILKYAPNSHqarRL--LASIQLRLGRVDEAIATLSPALGLDPDD 362
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488356494 238 QSL-----YLYLAKALQEEEQLEEAKA-VIEEGIAENPFQVELYQFASenayrlHDIAGAENWLLKALELGEKTDESRLT 311
Cdd:TIGR02917 363 PAAlsllgEAYLALGDFEKAAEYLAKAtELDPENAAARTQLGISKLSQ------GDPSEAIADLETAAQLDPELGRADLL 436
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488356494 312 LSNLYITEERFEEVITILNDLEET--DHPYAEWNLAKAYNELEDFAVAKVHYEQAaqeLSHEPEFLK---EYALFLREEG 386
Cdd:TIGR02917 437 LILSYLRSGQFDKALAAAKKLEKKqpDNASLHNLLGAIYLGKGDLAKAREAFEKA---LSIEPDFFPaaaNLARIDIQEG 513
|
410 420 430
....*....|....*....|....*....|..
gi 488356494 387 ELEKAKHLLHHYLEHEPGDVDMQSVLADMEER 418
Cdd:TIGR02917 514 NPDDAIQRFEKVLTIDPKNLRAILALAGLYLR 545
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
9-215 |
6.25e-11 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 64.24 E-value: 6.25e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488356494 9 QALQAENLAEAQLMFEEALKKDDENTLADLGETLLSLGFLEEAKQIFQQLLEQFPDADGLNIPLAEIAIENNEIDDAFIY 88
Cdd:COG3914 55 AAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAA 134
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488356494 89 LEKIPETSDSYVQSLLVTADLYQVLGIPEVSEAKLKEAANLMPEEPLIQFALGELYFTNGQFVEAITRYQSIVESGTAQI 168
Cdd:COG3914 135 LRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNA 214
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 488356494 169 SAISLnerLGSSYSMLGDFEEAVPYLEAAVKEEQTDDRLFQLAFTYL 215
Cdd:COG3914 215 DAHSN---LLFALRQACDWEVYDRFEELLAALARGPSELSPFALLYL 258
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
177-402 |
1.06e-10 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 61.56 E-value: 1.06e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488356494 177 LGSSYSMLGDFEEAVPYLEAAVKEEQTDDR-LFQLAFTYLQLHENQKAIALFQQLKTLNPHYQSLYLYLAKALQEEEQLE 255
Cdd:COG0457 14 LGLAYRRLGRYEEAIEDYEKALELDPDDAEaLYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYE 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488356494 256 EAKAVIEEGIAENPFQVELYQFASENAYRLHDIAGAENWLLKALELGEKTDESRLTLSNLYITEERFEEVITILNDLEET 335
Cdd:COG0457 94 EALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAA 173
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 488356494 336 DHPYAEWNLAKAYNELEDFAVAKVHYEQAAQELSHEPEFLKEYALFLREEGELEKAKHLLHHYLEHE 402
Cdd:COG0457 174 ALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAALAL 240
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
2-366 |
2.02e-10 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 62.79 E-value: 2.02e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488356494 2 SYSEKMVQALQAENLAEAQLMFEEALKKDDENTLAD--LGETLLSLGFLEEAKQIFQQLLEQFPDADGLNIPLAEIAIEN 79
Cdd:TIGR02917 24 ELIEAAKSYLQKNKYKAAIIQLKNALQKDPNDAEARflLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPLLARAYLLQ 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488356494 80 NEIDDAFIYLEKIPETSD-SYVQSLLVTADLYQVLGIPEVSEAKLKEAANLMPEEPLIQFALGELYFTNGQFVEAITRYQ 158
Cdd:TIGR02917 104 GKFQQVLDELPGKTLLDDeGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALID 183
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488356494 159 SIVESGTAQISAISLnerLGSSYSMLGDFEEAVPYLEAAVKEEQTDDR-LFQLAFTYLQLHENQKAIA-LFQQLKTLNPH 236
Cdd:TIGR02917 184 EVLTADPGNVDALLL---KGDLLLSLGNIELALAAYRKAIALRPNNIAvLLALATILIEAGEFEEAEKhADALLKKAPNS 260
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488356494 237 YQSLYLylaKALQEEEQLEEAKAV--IEEGIAENPFQVELYQFASENAYRLHDIAGAENWLLKALELGEKTDESRLTLSN 314
Cdd:TIGR02917 261 PLAHYL---KALVDFQKKNYEDARetLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLAS 337
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....
gi 488356494 315 LYITEERFEEVITILNDLEETD--HPYAEWNLAKAYNELEDFAVAKVHYEQAAQ 366
Cdd:TIGR02917 338 IQLRLGRVDEAIATLSPALGLDpdDPAALSLLGEAYLALGDFEKAAEYLAKATE 391
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
8-133 |
3.85e-10 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 57.51 E-value: 3.85e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488356494 8 VQALQAENLAEAQLMFEEALKKDDENT--LADLGETLLSLGFLEEAKQIFQQLLEQFPDADGLNIPLAEIAIENNEIDDA 85
Cdd:COG4783 12 QALLLAGDYDEAEALLEKALELDPDNPeaFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEA 91
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 488356494 86 FIYLEKIPETSDSYVQSLLVTADLYQVLGIPEVSEAKLKEAANLMPEE 133
Cdd:COG4783 92 LALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
99-336 |
1.93e-09 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 57.71 E-value: 1.93e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488356494 99 YVQSLLVTADLYQVLGIPEVSEAKLKEAANLMPEEPLIQFALGELYFTNGQFVEAITRYQSIVESGTAQISAISlneRLG 178
Cdd:COG0457 7 DAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN---NLG 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488356494 179 SSYSMLGDFEEAVPYLEAAVKEEQTDDR-LFQLAFTYLQLHENQKAIALFQQLKTLNPHYQSLYLYLAKALQEEEQLEEA 257
Cdd:COG0457 84 LALQALGRYEEALEDYDKALELDPDDAEaLYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEA 163
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 488356494 258 KAVIEEGIAENPFQVELYQFASENAYRLHDIAGAENWLLKALELGEKTDESRLTLSNLYITEERFEEVITILNDLEETD 336
Cdd:COG0457 164 LELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAALALYQ 242
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
26-245 |
7.47e-09 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 56.17 E-value: 7.47e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488356494 26 ALKKDDENTLADLGETLLSLGFLEEAKQIFQQLLEQFPDADGLNIPLAEIAIENNEIDDAFIYLEKIPETSDSYVQSLLV 105
Cdd:COG0457 2 ELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNN 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488356494 106 TADLYQVLGIPEVSEAKLKEAANLMPEEPLIQFALGELYFTNGQFVEAITRYQSIVEsgtAQISAISLNERLGSSYSMLG 185
Cdd:COG0457 82 LGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALE---LDPDDADALYNLGIALEKLG 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 488356494 186 DFEEAVPYLEAAVKEEQTDDRLFQLAFTYLQLHENQKAIALFQQLKTLNPHYQSLYLYLA 245
Cdd:COG0457 159 RYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAA 218
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
100-237 |
1.76e-08 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 52.89 E-value: 1.76e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488356494 100 VQSLLVTADLYQVLGIPEVSEAKLKEAANLMPEEPLIQFALGELYFTNGQFVEAITRYQSIVEsgtAQISAISLNERLGS 179
Cdd:COG4783 4 AEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALE---LDPDEPEARLNLGL 80
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 488356494 180 SYSMLGDFEEAVPYLEAAVKEEQTD-DRLFQLAFTYLQLHENQKAIALFQQLKTLNPHY 237
Cdd:COG4783 81 ALLKAGDYDEALALLEKALKLDPEHpEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
35-162 |
2.51e-08 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 52.50 E-value: 2.51e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488356494 35 LADLGETLLSLGFLEEAKQIFQQLLEQFPDADGLNIPLAEIAIENNEIDDAFIYLEKIPETSDSYVQSLLVTADLYQVLG 114
Cdd:COG4783 7 LYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAG 86
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 488356494 115 IPEVSEAKLKEAANLMPEEPLIQFALGELYFTNGQFVEAITRYQSIVE 162
Cdd:COG4783 87 DYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALE 134
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
96-413 |
1.66e-07 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 53.55 E-value: 1.66e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488356494 96 SDSYVQSLLVTADLYQVLGIPEVSEAKLKEAANLMPEEPLIQFALGELYFTNGQFVEAITRYQSIVESGtaqISAISLNE 175
Cdd:TIGR02917 18 GDQSPEELIEAAKSYLQKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLG---YPKNQVLP 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488356494 176 RLGSSYSMLGDFEEAVPYLEA--AVKEEQTDDRLFQLAFTYLQLHENQKAIALFQQLKTLNPHYQSLYLYLAKALQEEEQ 253
Cdd:TIGR02917 95 LLARAYLLQGKFQQVLDELPGktLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENR 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488356494 254 LEEAKAVIEEGIAENPFQVELYQFASENAYRLHDIAGAENWLLKALELGEKTDESRLTLSNLYITEERFEEVITILNDLE 333
Cdd:TIGR02917 175 FDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALL 254
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488356494 334 ET--DHPYAEWNLAKAYNELEDFAVAKVHYEQAaqeLSHEPEFLK--------EYALflreeGELEKAKHLLHHYLEHEP 403
Cdd:TIGR02917 255 KKapNSPLAHYLKALVDFQKKNYEDARETLQDA---LKSAPEYLPalllagasEYQL-----GNLEQAYQYLNQILKYAP 326
|
330
....*....|
gi 488356494 404 GDVDMQSVLA 413
Cdd:TIGR02917 327 NSHQARRLLA 336
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
72-301 |
2.08e-07 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 51.55 E-value: 2.08e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488356494 72 LAEIAIENNEIDDAFIYLEKIPETSDSYVQSLLVTADLYQVLGIPEVSEAKLKEAANLMPEEPLIQFALGELYFTNGQFV 151
Cdd:COG0457 14 LGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYE 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488356494 152 EAITRYQSIVESGTAQISAIslnERLGSSYSMLGDFEEAVPYLEAAVKEEQTD-DRLFQLAFTYLQLHENQKAIALFQQL 230
Cdd:COG0457 94 EALEDYDKALELDPDDAEAL---YNLGLALLELGRYDEAIEAYERALELDPDDaDALYNLGIALEKLGRYEEALELLEKL 170
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 488356494 231 KTLNPHYQSLYLYLAKALQEEEQLEEAKAVIEEGIAENPFQVELYQFASENAYRLHDIAGAENWLLKALEL 301
Cdd:COG0457 171 EAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAALALY 241
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
13-246 |
5.60e-07 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 52.01 E-value: 5.60e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488356494 13 AENLAEAQLMFEEALKKDDENTLADLGETLLSL--GFLEEAKQIFQQLLEQFPDADGLNIPLAEIAIENNEIDDAFIYLE 90
Cdd:TIGR02917 648 MKNYAKAITSLKRALELKPDNTEAQIGLAQLLLaaKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYR 727
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488356494 91 KIPETSDSyVQSLLVTADLYQVLGIPEVSEAKLKEAANLMPEEPLIQFALGELYFTNGQFVEAITRYQSIVESgtAQISA 170
Cdd:TIGR02917 728 KALKRAPS-SQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKK--APDNA 804
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 488356494 171 ISLNErLGSSYSMLGDfEEAVPYLEAAVK-EEQTDDRLFQLAFTYLQLHENQKAIALFQQLKTLNPHYQSLYLYLAK 246
Cdd:TIGR02917 805 VVLNN-LAWLYLELKD-PRALEYAERALKlAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLAL 879
|
|
| COG4700 |
COG4700 |
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown]; |
291-396 |
5.66e-07 |
|
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
Pssm-ID: 443735 [Multi-domain] Cd Length: 249 Bit Score: 50.27 E-value: 5.66e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488356494 291 AENWLLKALELGEKTDES-RLTLSNLYITEERFEEVITILNDLEETDHPY----AEWNLAKAYNELEDFAVAKVHYEQAA 365
Cdd:COG4700 108 AIELYEEALTGIFADDPHiLLGLAQALFELGRYAEALETLEKLIAKNPDFkssdAHLLYARALEALGDLEAAEAELEALA 187
|
90 100 110
....*....|....*....|....*....|.
gi 488356494 366 QELSHEPEFLkEYALFLREEGELEKAKHLLH 396
Cdd:COG4700 188 RRYSGPEARY-RYAKFLARQGRTAEAKELLE 217
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
144-235 |
7.32e-07 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 47.68 E-value: 7.32e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488356494 144 YFTNGQFVEAITRYQSIVESGTAQISAISLNERLGSSYSMLGDFEEAVPYLEAAVKE----EQTDDRLFQLAFTYLQLHE 219
Cdd:COG1729 3 LLKAGDYDEAIAAFKAFLKRYPNSPLAPDALYWLGEAYYALGDYDEAAEAFEKLLKRypdsPKAPDALLKLGLSYLELGD 82
|
90
....*....|....*.
gi 488356494 220 NQKAIALFQQLKTLNP 235
Cdd:COG1729 83 YDKARATLEELIKKYP 98
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
11-234 |
8.87e-07 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 50.01 E-value: 8.87e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488356494 11 LQAENLAEAQLMFEEALKKDDEN--TLADLGETLLSLGFLEEAKQIFQQLLEQFPDADGLNIPLAEIAIENNEIDDAFIY 88
Cdd:COG0457 19 RRLGRYEEAIEDYEKALELDPDDaeALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALED 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488356494 89 LEKIPETSDSYVQSLLVTADLYQVLGIPEVSEAKLKEAANLMPEEPLIQFALGELYFTNGQFVEAITRYQSIVESGTAQI 168
Cdd:COG0457 99 YDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAAL 178
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 488356494 169 SAISLNERLGSSYSMLGDFEEAVPYLEAAVKEEQTDDRLFQLAFTYLQLHENQKAIALFQQLKTLN 234
Cdd:COG0457 179 LAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAALALYQYR 244
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
137-269 |
9.56e-07 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 47.88 E-value: 9.56e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488356494 137 QFALGELYFTNGQFVEAITRYQSIVESGTAQISAislNERLGSSYSMLGDFEEAVPYLEAAVKEEQTDDR-LFQLAFTYL 215
Cdd:COG4783 7 LYALAQALLLAGDYDEAEALLEKALELDPDNPEA---FALLGEILLQLGDLDEAIVLLHEALELDPDEPEaRLNLGLALL 83
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 488356494 216 QLHENQKAIALFQQLKTLNPHYQSLYLYLAKALQEEEQLEEAKAVIEEGIAENP 269
Cdd:COG4783 84 KAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDP 137
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
207-392 |
1.12e-06 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 49.62 E-value: 1.12e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488356494 207 LFQLAFTYLQLHENQKAIALFQQLKTLNPHYQSLYLYLAKALQEEEQLEEAKAVIEEGIAENPFQVELYQFASENAYRLH 286
Cdd:COG0457 11 YNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALG 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488356494 287 DIAGAENWLLKALELGEKTDESRLTLSNLYITEERFEEVITILNDLEE--TDHPYAEWNLAKAYNELEDFAVAKVHYEQA 364
Cdd:COG0457 91 RYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALEldPDDADALYNLGIALEKLGRYEEALELLEKL 170
|
170 180
....*....|....*....|....*...
gi 488356494 365 AQELSHEPEFLKEYALFLREEGELEKAK 392
Cdd:COG0457 171 EAAALAALLAAALGEAALALAAAEVLLA 198
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
225-415 |
2.33e-06 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 49.61 E-value: 2.33e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488356494 225 ALFQQLKTLNPHYQSLYLYLAKALQEEEQLEEAKAVIEEGIAENPFQVELYQFASENAYRLHDIAGAENWLLKALElgek 304
Cdd:COG3914 2 AAAALLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLL---- 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488356494 305 tDESRLTLSNLYITEERFEEVITILNDLEE--TDHPYAEWNLAKAYNELEDFAVAKVHYEQAAQELSHEPEFLKEYALFL 382
Cdd:COG3914 78 -AALLELAALLLQALGRYEEALALYRRALAlnPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEAL 156
|
170 180 190
....*....|....*....|....*....|...
gi 488356494 383 REEGELEKAKHLLHHYLEHEPGDVDMQSVLADM 415
Cdd:COG3914 157 RRLGRLEEAIAALRRALELDPDNAEALNNLGNA 189
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
3-126 |
2.44e-06 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 48.57 E-value: 2.44e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488356494 3 YSEKMVQALQAENLAEAQLMFEEALKKDDENTLA--DLGETLLSLGFLEEAKQIFQQLLEQFPDADGLNIPLAEIAIENN 80
Cdd:COG2956 147 YCELAELYLEQGDYDEAIEALEKALKLDPDCARAllLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLG 226
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 488356494 81 EIDDAFIYLEKIPETSDSYVQsLLVTADLYQVLGIPEVSEAKLKEA 126
Cdd:COG2956 227 DPEEALELLRKALELDPSDDL-LLALADLLERKEGLEAALALLERQ 271
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
127-383 |
3.08e-06 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 49.22 E-value: 3.08e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488356494 127 ANLMPEEPLIQFALGELYFTNGQFVEAITRYQSIVESGTAQISAISLNERLGSSYSMLGDFEEAVPYLEAAVKEEQTDDR 206
Cdd:COG3914 1 AAAAALLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAAL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488356494 207 LFQLAFTYLQLHENQKAIALFQQLKTLNPHYQSLYLYLAKALQEEEqleeakavieegiaenpfqvelyqfasenayrlh 286
Cdd:COG3914 81 LELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALG---------------------------------- 126
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488356494 287 DIAGAENWLLKALELGEKTDESRLTLSNLYITEERFEEVITILNDLEETDHPYAEW--NLAKAYNELEDFAVAKVHYEQA 364
Cdd:COG3914 127 RLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEAlnNLGNALQDLGRLEEAIAAYRRA 206
|
250
....*....|....*....
gi 488356494 365 aqeLSHEPEFLKEYALFLR 383
Cdd:COG3914 207 ---LELDPDNADAHSNLLF 222
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
259-373 |
6.78e-06 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 45.38 E-value: 6.78e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488356494 259 AVIEEGIAENPFQVELYQFASENAYRLHDIAGAENWLLKALELGEKTDESRLTLSNLYITEERFEEVITILNDLEETD-- 336
Cdd:COG4235 4 ARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDpd 83
|
90 100 110
....*....|....*....|....*....|....*..
gi 488356494 337 HPYAEWNLAKAYNELEDFAVAKVHYEQAAQELSHEPE 373
Cdd:COG4235 84 NPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAP 120
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
271-405 |
6.99e-06 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 45.57 E-value: 6.99e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488356494 271 QVELYQFASENAYRLHDIAGAENWLLKALELGEKTDESRLTLSNLYITEERFEEVITILNDLEETD--HPYAEWNLAKAY 348
Cdd:COG4783 3 CAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDpdEPEARLNLGLAL 82
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 488356494 349 NELEDFAVAKVHYEQAAQELSHEPEFLKEYALFLREEGELEKAKHLLHHYLEHEPGD 405
Cdd:COG4783 83 LKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
176-301 |
7.05e-06 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 45.57 E-value: 7.05e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488356494 176 RLGSSYSMLGDFEEAVPYLEAAVKEEQTDDRLFQ-LAFTYLQLHENQKAIALFQQLKTLNPHYQSLYLYLAKALQEEEQL 254
Cdd:COG4783 9 ALAQALLLAGDYDEAEALLEKALELDPDNPEAFAlLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDY 88
|
90 100 110 120
....*....|....*....|....*....|....*....|....*..
gi 488356494 255 EEAKAVIEEGIAENPFQVELYQFASENAYRLHDIAGAENWLLKALEL 301
Cdd:COG4783 89 DEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALEL 135
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
100-211 |
7.33e-06 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 45.00 E-value: 7.33e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488356494 100 VQSLLVTADLYQVLGIPEVSEAKLKEAANLMPEEPLIQFALGELYFTNGQFVEAITRYQSIVESGTAQISAISLnerLGS 179
Cdd:COG4235 17 AEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYL---LGL 93
|
90 100 110
....*....|....*....|....*....|..
gi 488356494 180 SYSMLGDFEEAVPYLEAAVKEEQTDDRLFQLA 211
Cdd:COG4235 94 AAFQQGDYAEAIAAWQKLLALLPADAPARLLE 125
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
307-418 |
1.32e-05 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 44.80 E-value: 1.32e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488356494 307 ESRLTLSNLYITEERFEEVITILNDL--EETDHPYAEWNLAKAYNELEDFAVAKVHYEQAAQELSHEPEFLKEYALFLRE 384
Cdd:COG4783 5 EALYALAQALLLAGDYDEAEALLEKAleLDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLK 84
|
90 100 110
....*....|....*....|....*....|....
gi 488356494 385 EGELEKAKHLLHHYLEHEPGDVDMQSVLADMEER 418
Cdd:COG4783 85 AGDYDEALALLEKALKLDPEHPEAYLRLARAYRA 118
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
50-177 |
1.33e-05 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 44.61 E-value: 1.33e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488356494 50 EAKQIFQQLLEQFPDADGLNIPLAEIAIENNEIDDAFIYLEKIPETSDSYVQSLLVTADLYQVLGIPEVSEAKLKEAANL 129
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 488356494 130 MPEEPLIQFALGELYFTNGQFVEAITRYQSIVESGTAQISAISLNERL 177
Cdd:COG4235 81 DPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARLLEASI 128
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
11-92 |
1.44e-05 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 44.23 E-value: 1.44e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488356494 11 LQAENLAEAQLMFEEALKKDDENT--LADLGETLLSLGFLEEAKQIFQQLLEQFPDADGLNIPLAEIAIENNEIDDAFIY 88
Cdd:COG4235 28 LRLGRYDEALAAYEKALRLDPDNAdaLLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDYAEAIAA 107
|
....
gi 488356494 89 LEKI 92
Cdd:COG4235 108 WQKL 111
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
189-310 |
1.52e-05 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 44.23 E-value: 1.52e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488356494 189 EAVPYLEAAVKEEQTD-DRLFQLAFTYLQLHENQKAIALFQQLKTLNPHYQSLYLYLAKALQEEEQLEEAKAVIEEGIAE 267
Cdd:COG4235 1 EAIARLRQALAANPNDaEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80
|
90 100 110 120
....*....|....*....|....*....|....*....|...
gi 488356494 268 NPFQVELYQFASENAYRLHDIAGAENWLLKALELGEKTDESRL 310
Cdd:COG4235 81 DPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARL 123
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
265-418 |
2.48e-05 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 45.38 E-value: 2.48e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488356494 265 IAENPFQVELYQFASENAYRLHDIAGAENWLLKALELGEKTDESRLTLSNLYITEERFEEVITILNDLEETDHPYAE--W 342
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEalN 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 488356494 343 NLAKAYNELEDFAVAKVHYEQAAQELSHEPEFLKEYALFLREEGELEKAKHLLHHYLEHEPGDVDMQSVLADMEER 418
Cdd:COG0457 81 NLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEK 156
|
|
| COG4700 |
COG4700 |
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown]; |
139-243 |
2.50e-05 |
|
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
Pssm-ID: 443735 [Multi-domain] Cd Length: 249 Bit Score: 45.26 E-value: 2.50e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488356494 139 ALGELYFTNGQFVEAITRYQSIVESGTAQISAISLneRLGSSYSMLGDFEEAVPYLEAAVKEE---QTDDRLFQLAFTYL 215
Cdd:COG4700 94 RLADALLELGRYDEAIELYEEALTGIFADDPHILL--GLAQALFELGRYAEALETLEKLIAKNpdfKSSDAHLLYARALE 171
|
90 100
....*....|....*....|....*...
gi 488356494 216 QLHENQKAIALFQQLKTLNPHYQSLYLY 243
Cdd:COG4700 172 ALGDLEAAEAELEALARRYSGPEARYRY 199
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
238-366 |
2.53e-05 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 43.64 E-value: 2.53e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488356494 238 QSLYLYLAKALQEEEQLEEAKAVIEEGIAENPFQVELYQFASENAYRLHDIAGAENWLLKALELGEKTDESRLTLSNLYI 317
Cdd:COG4783 4 AEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALL 83
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|.
gi 488356494 318 TEERFEEVITILNDLEETD--HPYAEWNLAKAYNELEDFAVAKVHYEQAAQ 366
Cdd:COG4783 84 KAGDYDEALALLEKALKLDpeHPEAYLRLARAYRALGRPDEAIAALEKALE 134
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
201-329 |
3.82e-05 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 43.26 E-value: 3.82e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488356494 201 EQTDDRLFQLAFTYLQLHENQKAIALFQQLKTLNPHYQSLYLYLAKALQEEEQLEEAKAVIEEGIAENPFQVELYQFASE 280
Cdd:COG4783 1 AACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGL 80
|
90 100 110 120
....*....|....*....|....*....|....*....|....*....
gi 488356494 281 NAYRLHDIAGAENWLLKALELGEKTDESRLTLSNLYITEERFEEVITIL 329
Cdd:COG4783 81 ALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAAL 129
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
287-416 |
2.45e-04 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 43.53 E-value: 2.45e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488356494 287 DIAGAENWLLKALELGEKTDESRLTLSNLYITEERFEEVITILNDLEETDHP-YAEWN--LAKAYNELEDFAVAKVHYEQ 363
Cdd:TIGR02917 71 DYAAAEKELRKALSLGYPKNQVLPLLARAYLLQGKFQQVLDELPGKTLLDDEgAAELLalRGLAYLGLGQLELAQKSYEQ 150
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 488356494 364 AAQELSHEPEFLKEYALFLREEGELEKAKHLLHHYLEHEPGDVDMQSVLADME 416
Cdd:TIGR02917 151 ALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLL 203
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
233-400 |
3.52e-04 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 41.92 E-value: 3.52e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488356494 233 LNPHYQSLYLYLAKALQEEEQLEEAKAVIEEGIAENPFQVELYQFASENAYRLHDIAGAENWLLKALELGEKTDESRLTL 312
Cdd:COG0457 3 LDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNL 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488356494 313 SNLYITEERFEEVITILNDLEETD--HPYAEWNLAKAYNELEDFAVAKVHYEQAAQELSHEPEFLKEYALFLREEGELEK 390
Cdd:COG0457 83 GLALQALGRYEEALEDYDKALELDpdDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEE 162
|
170
....*....|
gi 488356494 391 AKHLLHHYLE 400
Cdd:COG0457 163 ALELLEKLEA 172
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
8-92 |
5.78e-04 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 39.20 E-value: 5.78e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488356494 8 VQALQAENLAEAQLMFEEALKKDDENTLAD-----LGETLLSLGFLEEAKQIFQQLLEQFPD---ADGLNIPLAEIAIEN 79
Cdd:COG1729 1 KALLKAGDYDEAIAAFKAFLKRYPNSPLAPdalywLGEAYYALGDYDEAAEAFEKLLKRYPDspkAPDALLKLGLSYLEL 80
|
90
....*....|...
gi 488356494 80 NEIDDAFIYLEKI 92
Cdd:COG1729 81 GDYDKARATLEEL 93
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
143-235 |
1.03e-03 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 38.23 E-value: 1.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488356494 143 LYFTNGQFVEAITRYQSIVESGTAQISAISLnerLGSSYSMLGDFEEAVPYLEAAVKEEQTDDRLFQLAFTYLQLHENQK 222
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNN---LGLLLLEQGRYDEAIALEKALKLDPNNAEALLNLAELLLELGDYDE 77
|
90
....*....|...
gi 488356494 223 AIALFQQLKTLNP 235
Cdd:COG3063 78 ALAYLERALELDP 90
|
|
| HemYx |
COG3071 |
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ... |
275-403 |
1.27e-03 |
|
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];
Pssm-ID: 442305 [Multi-domain] Cd Length: 323 Bit Score: 40.66 E-value: 1.27e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488356494 275 YQFASENAYRLHDIAGAENWLLKALELGEKTDESR-LTLSNLYITEERFEEVITILNDLEETD--HPYAEWNLAKAYNEL 351
Cdd:COG3071 53 YLLAARAAQALGDYERRDEYLAQALELAPEAELAVlLTRAELLLDQGQAEQALATLEALRAGAprHPQVLRLLLQAYRQL 132
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488356494 352 EDFAVA----------KVHYEQAAQELS------------------------------HEPEFLKEYALFLREEGELEKA 391
Cdd:COG3071 133 GDWEELlellpalrkhKALSAEEAQALErraylgllrqaardaealkalwkalpraerRDPELAAAYARALIALGDHDEA 212
|
170
....*....|..
gi 488356494 392 KHLLHHYLEHEP 403
Cdd:COG3071 213 ERLLREALKRQW 224
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
282-366 |
1.41e-03 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 37.84 E-value: 1.41e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488356494 282 AYRLHDIAGAENWLLKALELGEKTDESRLTLSNLYITEERFEEVITILNDLE-ETDHPYAEWNLAKAYNELEDFAVAKVH 360
Cdd:COG3063 2 YLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIALEKALKlDPNNAEALLNLAELLLELGDYDEALAY 81
|
....*.
gi 488356494 361 YEQAAQ 366
Cdd:COG3063 82 LERALE 87
|
|
| TPR_19 |
pfam14559 |
Tetratricopeptide repeat; |
48-104 |
2.14e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 434038 [Multi-domain] Cd Length: 65 Bit Score: 36.41 E-value: 2.14e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*....
gi 488356494 48 LEEAKQIFQQLLEQFPDADGLNIPLAEIAIENNEIDDAFIYLEKIPET--SDSYVQSLL 104
Cdd:pfam14559 4 YAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALPAAdpDDPRYAALL 62
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
10-91 |
2.27e-03 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 37.07 E-value: 2.27e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488356494 10 ALQAENLAEAQLMFEEALKKDDENTLA--DLGETLLSLGFLEEAKQiFQQLLEQFPDADGLNIPLAEIAIENNEIDDAFI 87
Cdd:COG3063 2 YLKLGDLEEAEEYYEKALELDPDNADAlnNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEALA 80
|
....
gi 488356494 88 YLEK 91
Cdd:COG3063 81 YLER 84
|
|
| PRK11447 |
PRK11447 |
cellulose synthase subunit BcsC; Provisional |
50-405 |
2.54e-03 |
|
cellulose synthase subunit BcsC; Provisional
Pssm-ID: 183140 [Multi-domain] Cd Length: 1157 Bit Score: 40.07 E-value: 2.54e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488356494 50 EAKQIFQQLLEQFPDADGLNIPLAEIAIENNEIDDAFIYLEKIPETSDSYVQSllvtADLY--QVLGIP--EVSEAKLKE 125
Cdd:PRK11447 165 EAINQLQRLNADYPGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAA----AQLWygQIKDMPvsDASVAALQK 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488356494 126 AANLMPEEPLIQFALGELYFTNGQFVEAITRYQSiveSGTAQISAislnerlgssysmlGDFEEAVPYLEAAVKEEQTD- 204
Cdd:PRK11447 241 YLQVFSDGDSVAAARSQLAEQQKQLADPAFRARA---QGLAAVDS--------------GQGGKAIPELQQAVRANPKDs 303
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488356494 205 DRLFQLAFTYLQLHENQKAIALFQQLKTLNPH------YQSLylylakalqeeEQLEEAKAVIEEG----IAENPFQVE- 273
Cdd:PRK11447 304 EALGALGQAYSQQGDRARAVAQFEKALALDPHssnrdkWESL-----------LKVNRYWLLIQQGdaalKANNLAQAEr 372
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488356494 274 LYQFA----SENAYRL----------HDIAGAENWLLKALELGEKTDESRLTLSNLYITE--ERFEEVITIL-----NDL 332
Cdd:PRK11447 373 LYQQArqvdNTDSYAVlglgdvamarKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQspEKALAFIASLsasqrRSI 452
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 488356494 333 EETDHPYAEWNLAKAYNELE---DFAVAKVHYEQAAQELSHEPEFLKEYALFLREEGELEKAKHLLHHYLEHEPGD 405
Cdd:PRK11447 453 DDIERSLQNDRLAQQAEALEnqgKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPND 528
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
291-417 |
2.87e-03 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 37.68 E-value: 2.87e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488356494 291 AENWLLKALELGEKTDESRLTLSNLYITEERFEEVITILNDLEETDHPYAEW--NLAKAYNELEDFAVAKVHYEQAAQEL 368
Cdd:COG4235 2 AIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADAllDLAEALLAAGDTEEAEELLERALALD 81
|
90 100 110 120
....*....|....*....|....*....|....*....|....*....
gi 488356494 369 SHEPEFLKEYALFLREEGELEKAKHLLHHYLEHEPGDVDMQSVLADMEE 417
Cdd:COG4235 82 PDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARLLEASIAE 130
|
|
| TPR_19 |
pfam14559 |
Tetratricopeptide repeat; |
352-413 |
2.88e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 434038 [Multi-domain] Cd Length: 65 Bit Score: 36.02 E-value: 2.88e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 488356494 352 EDFAVAKVHYEQAAQELSHEPEFLKEYALFLREEGELEKAKHLLHHYLEHEPGDVDMQSVLA 413
Cdd:pfam14559 2 GDYAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALPAADPDDPRYAALLA 63
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
119-200 |
3.71e-03 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 36.89 E-value: 3.71e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488356494 119 SEAKLKEAANLMPEEPLI---QFALGELYFTNGQFVEAITRYQSIVESGTAQISAISLNERLGSSYSMLGDFEEAVPYLE 195
Cdd:COG1729 12 AIAAFKAFLKRYPNSPLApdaLYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKAPDALLKLGLSYLELGDYDKARATLE 91
|
....*
gi 488356494 196 AAVKE 200
Cdd:COG1729 92 ELIKK 96
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
342-418 |
4.81e-03 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 36.91 E-value: 4.81e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 488356494 342 WNLAKAYNELEDFAVAKVHYEQAAQELSHEPEFLKEYALFLREEGELEKAKHLLHHYLEHEPGDVDMQSVLADMEER 418
Cdd:COG4235 21 LLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQ 97
|
|
| TPR_19 |
pfam14559 |
Tetratricopeptide repeat; |
13-66 |
6.03e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 434038 [Multi-domain] Cd Length: 65 Bit Score: 35.25 E-value: 6.03e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*.
gi 488356494 13 AENLAEAQLMFEEALKKDDENT--LADLGETLLSLGFLEEAKQIFQQLLEQFPDAD 66
Cdd:pfam14559 1 EGDYAEALELLEQALAEDPDNAeaRLGLAEALLALGRLDEAEALLAALPAADPDDP 56
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
10-66 |
6.38e-03 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 36.12 E-value: 6.38e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 488356494 10 ALQAENLAEAQLMFEEALKKDDENTLAD-----LGETLLSLGFLEEAKQIFQQLLEQFPDAD 66
Cdd:COG1729 40 YYALGDYDEAAEAFEKLLKRYPDSPKAPdallkLGLSYLELGDYDKARATLEELIKKYPDSE 101
|
|
| ACL4-like |
cd24142 |
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ... |
185-330 |
9.91e-03 |
|
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.
Pssm-ID: 467942 [Multi-domain] Cd Length: 306 Bit Score: 37.61 E-value: 9.91e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488356494 185 GDFEEAVPYLEAAVKEEQTDDR-LFQLAFTYLQLHENQKAIALFQQLKTLNPHYQ-SLYLYLAKALQEEEQLEEAK---A 259
Cdd:cd24142 14 GNFELALKFLQRALELEPNNVEaLELLGEILLELGDVEEAREVLLRAIELDPDGGyEKYLYLGQLSGGEEALQYYEkgiE 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488356494 260 VIEEGIAENpfQVELYQFASENAYRLHDIAGA----------------------ENWLLKALELGEKTDESRLTLSNLYI 317
Cdd:cd24142 94 ILEEELQAL--QAASAEAEEEAEELKRKLSSAlcalaeiymtdlcdepdaeqrcEELITKALELDPTNPEALQTLASLRI 171
|
170
....*....|...
gi 488356494 318 TEERFEEVITILN 330
Cdd:cd24142 172 SQQRPDEAKEALR 184
|
|
| |
