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Conserved domains on  [gi|488377320|ref|WP_002446705|]
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YtxH domain-containing protein [Staphylococcus epidermidis]

Protein Classification

YtxH domain-containing protein( domain architecture ID 1904375)

YtxH domain-containing protein similar to Leishmania small hydrophilic endoplasmic reticulum-associated protein (SHERP), which may function in modulating cellular processes related to membrane organization and/or acidification during vector transmission of infective Leishmania

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
GvpP super family cl44178
Gas vesicle protein YhaH [General function prediction only];
8-94 3.37e-05

Gas vesicle protein YhaH [General function prediction only];


The actual alignment was detected with superfamily member COG4980:

Pssm-ID: 444004 [Multi-domain]  Cd Length: 106  Bit Score: 40.34  E-value: 3.37e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488377320   8 FKVALGIGGAITAVAL------SRKESRDKLKQEYNKYKEDPELYKSSAKDLATQISNKANETIQEVKKNPKDYVERIKS 81
Cdd:COG4980    6 FLLGLLVGAAVGAAAGllfapkSGKETRKKLKDKADDLKDKAEDLKDELKEKASELSEEAKEKLDELIEEIKEKIEELKE 85

                         90
                 ....*....|...
gi 488377320  82 NPKEFLEEEKSKI 94
Cdd:COG4980   86 EVEPKIEELKEEA 98
 
Name Accession Description Interval E-value
GvpP COG4980
Gas vesicle protein YhaH [General function prediction only];
8-94 3.37e-05

Gas vesicle protein YhaH [General function prediction only];


Pssm-ID: 444004 [Multi-domain]  Cd Length: 106  Bit Score: 40.34  E-value: 3.37e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488377320   8 FKVALGIGGAITAVAL------SRKESRDKLKQEYNKYKEDPELYKSSAKDLATQISNKANETIQEVKKNPKDYVERIKS 81
Cdd:COG4980    6 FLLGLLVGAAVGAAAGllfapkSGKETRKKLKDKADDLKDKAEDLKDELKEKASELSEEAKEKLDELIEEIKEKIEELKE 85

                         90
                 ....*....|...
gi 488377320  82 NPKEFLEEEKSKI 94
Cdd:COG4980   86 EVEPKIEELKEEA 98
 
Name Accession Description Interval E-value
GvpP COG4980
Gas vesicle protein YhaH [General function prediction only];
8-94 3.37e-05

Gas vesicle protein YhaH [General function prediction only];


Pssm-ID: 444004 [Multi-domain]  Cd Length: 106  Bit Score: 40.34  E-value: 3.37e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488377320   8 FKVALGIGGAITAVAL------SRKESRDKLKQEYNKYKEDPELYKSSAKDLATQISNKANETIQEVKKNPKDYVERIKS 81
Cdd:COG4980    6 FLLGLLVGAAVGAAAGllfapkSGKETRKKLKDKADDLKDKAEDLKDELKEKASELSEEAKEKLDELIEEIKEKIEELKE 85

                         90
                 ....*....|...
gi 488377320  82 NPKEFLEEEKSKI 94
Cdd:COG4980   86 EVEPKIEELKEEA 98
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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