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Conserved domains on  [gi|488377911|ref|WP_002447296|]
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urease subunit beta [Staphylococcus epidermidis]

Protein Classification

urease subunit beta( domain architecture ID 10793749)

urease subunit beta (UreB) is a component of the urease enzyme complex that catalyzes the hydrolysis of urea into carbon dioxide and ammonia

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ureB PRK13201
urease subunit beta; Reviewed
 1-133 8.95e-83

urease subunit beta; Reviewed


:

Pssm-ID: 237302 [Multi-domain]  Cd Length: 136  Bit Score: 238.58  E-value: 8.95e-83
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488377911   1 MIPGEIIVKNTEIEINKHHPETVIEVKNTGDRPIQVGSHFHFFEANKALEFDREKAYGKHLDIPAGAAVRFEPGDEKKVQ 80
Cdd:PRK13201   1 MIPGEIITKSTEVEINNHHPETVIEVENTGDRPIQVGSHFHFYEANAALDFEREMAYGKHLDIPAGAAVRFEPGDKKEVQ 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....
gi 488377911  81 LVEYSGRRKIYGFRGLVDGDIDEERVFRPNDSNQN-AAVKNDAGEDNANKKGGK 133
Cdd:PRK13201  81 LVEYAGKRKIFGFRGMVNGPIDESRVYRPTDENDAyAGVFGDNGAENVNKKGGK 134
 
Name Accession Description Interval E-value
ureB PRK13201
urease subunit beta; Reviewed
 1-133 8.95e-83

urease subunit beta; Reviewed


Pssm-ID: 237302 [Multi-domain]  Cd Length: 136  Bit Score: 238.58  E-value: 8.95e-83
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488377911   1 MIPGEIIVKNTEIEINKHHPETVIEVKNTGDRPIQVGSHFHFFEANKALEFDREKAYGKHLDIPAGAAVRFEPGDEKKVQ 80
Cdd:PRK13201   1 MIPGEIITKSTEVEINNHHPETVIEVENTGDRPIQVGSHFHFYEANAALDFEREMAYGKHLDIPAGAAVRFEPGDKKEVQ 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....
gi 488377911  81 LVEYSGRRKIYGFRGLVDGDIDEERVFRPNDSNQN-AAVKNDAGEDNANKKGGK 133
Cdd:PRK13201  81 LVEYAGKRKIFGFRGMVNGPIDESRVYRPTDENDAyAGVFGDNGAENVNKKGGK 134
UreB COG0832
Urease beta subunit [Amino acid transport and metabolism];
4-104 2.13e-67

Urease beta subunit [Amino acid transport and metabolism];


Pssm-ID: 440594  Cd Length: 101  Bit Score: 198.36  E-value: 2.13e-67
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488377911   4 GEIIVKNTEIEINKHHPETVIEVKNTGDRPIQVGSHFHFFEANKALEFDREKAYGKHLDIPAGAAVRFEPGDEKKVQLVE 83
Cdd:COG0832    1 GEIIVADGDIELNAGRETITLTVANTGDRPIQVGSHYHFFEVNPALEFDREAARGMRLDIPAGTAVRFEPGQTREVELVP 80

                         90       100
                 ....*....|....*....|.
gi 488377911  84 YSGRRKIYGFRGLVDGDIDEE 104
Cdd:COG0832   81 IGGARRVYGFNGLVNGPLDDE 101
Urease_beta pfam00699
Urease beta subunit; This subunit is known as alpha in Heliobacter.
 3-100 4.79e-66

Urease beta subunit; This subunit is known as alpha in Heliobacter.


Pssm-ID: 459909  Cd Length: 98  Bit Score: 194.91  E-value: 4.79e-66
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488377911    3 PGEIIVKNTEIEINKHHPETVIEVKNTGDRPIQVGSHFHFFEANKALEFDREKAYGKHLDIPAGAAVRFEPGDEKKVQLV 82
Cdd:pfam00699   1 PGEIITGDGDIELNAGRETITLTVTNTGDRPIQVGSHYHFFEVNPALEFDREAAYGMRLDIPAGTAVRFEPGDTKTVTLV 80

                          90
                  ....*....|....*...
gi 488377911   83 EYSGRRKIYGFRGLVDGD 100
Cdd:pfam00699  81 PIGGARVVYGFNGLVNGP 98
Urease_beta cd00407
Urease beta-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis ...
 1-101 5.23e-63

Urease beta-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide. Nickel-dependent ureases are found in bacteria, archaea, fungi and plants. Their primary role is to allow the use of external and internally-generated urea as a nitrogen source. The enzyme consists of three subunits, alpha, beta and gamma, which can exist as separate proteins or can be fused on a single protein chain. The alpha-beta-gamma heterotrimer forms multimers, mainly trimers. The large alpha subunit is the catalytic domain containing an active site with a bi-nickel center complexed by a carbamylated lysine. The beta and gamma subunits play a role in subunit association to form the higher order trimers.


Pssm-ID: 238238  Cd Length: 101  Bit Score: 187.34  E-value: 5.23e-63
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488377911   1 MIPGEIIVKNTEIEINKHHPETVIEVKNTGDRPIQVGSHFHFFEANKALEFDREKAYGKHLDIPAGAAVRFEPGDEKKVQ 80
Cdd:cd00407    1 MIPGEIILKEGDIELNAGREAVTLKVKNTGDRPIQVGSHYHFFEVNPALKFDREKAYGMRLDIPAGTAVRFEPGEEKEVE 80

                         90       100
                 ....*....|....*....|.
gi 488377911  81 LVEYSGRRKIYGFRGLVDGDI 101
Cdd:cd00407   81 LVPIGGKRRVYGFNGLVNGPL 101
urease_beta TIGR00192
urease, beta subunit; In a number of species, including B.subtilis, Synechocystis, and ...
 1-101 1.72e-48

urease, beta subunit; In a number of species, including B.subtilis, Synechocystis, and Haemophilus influenzae, urease subunits beta and gamma are encoded as separate polypeptides. In Helicobacter pylori UreA and in the fission yeast Schizosaccharomyces pombe, beta subunit-like sequence follows gamma subunit-like sequence in a single chain; the fission yeast protein contains additional C-terminal regions. [Central intermediary metabolism, Nitrogen metabolism]


Pssm-ID: 129296  Cd Length: 101  Bit Score: 150.75  E-value: 1.72e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488377911    1 MIPGEIIVKNTEIEINKHHPETVIEVKNTGDRPIQVGSHFHFFEANKALEFDREKAYGKHLDIPAGAAVRFEPGDEKKVQ 80
Cdd:TIGR00192   1 MIPGELQLAEGDITINEGRKTVSVKVKNTGDRPIQVGSHFHFFEVNRALDFDRELAFGMRLDIPSGTAVRFEPGEEKSVE 80

                          90       100
                  ....*....|....*....|.
gi 488377911   81 LVEYSGRRKIYGFRGLVDGDI 101
Cdd:TIGR00192  81 LVAIGGNRRIYGFNGLVDGQL 101
 
Name Accession Description Interval E-value
ureB PRK13201
urease subunit beta; Reviewed
 1-133 8.95e-83

urease subunit beta; Reviewed


Pssm-ID: 237302 [Multi-domain]  Cd Length: 136  Bit Score: 238.58  E-value: 8.95e-83
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488377911   1 MIPGEIIVKNTEIEINKHHPETVIEVKNTGDRPIQVGSHFHFFEANKALEFDREKAYGKHLDIPAGAAVRFEPGDEKKVQ 80
Cdd:PRK13201   1 MIPGEIITKSTEVEINNHHPETVIEVENTGDRPIQVGSHFHFYEANAALDFEREMAYGKHLDIPAGAAVRFEPGDKKEVQ 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....
gi 488377911  81 LVEYSGRRKIYGFRGLVDGDIDEERVFRPNDSNQN-AAVKNDAGEDNANKKGGK 133
Cdd:PRK13201  81 LVEYAGKRKIFGFRGMVNGPIDESRVYRPTDENDAyAGVFGDNGAENVNKKGGK 134
UreB COG0832
Urease beta subunit [Amino acid transport and metabolism];
4-104 2.13e-67

Urease beta subunit [Amino acid transport and metabolism];


Pssm-ID: 440594  Cd Length: 101  Bit Score: 198.36  E-value: 2.13e-67
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488377911   4 GEIIVKNTEIEINKHHPETVIEVKNTGDRPIQVGSHFHFFEANKALEFDREKAYGKHLDIPAGAAVRFEPGDEKKVQLVE 83
Cdd:COG0832    1 GEIIVADGDIELNAGRETITLTVANTGDRPIQVGSHYHFFEVNPALEFDREAARGMRLDIPAGTAVRFEPGQTREVELVP 80

                         90       100
                 ....*....|....*....|.
gi 488377911  84 YSGRRKIYGFRGLVDGDIDEE 104
Cdd:COG0832   81 IGGARRVYGFNGLVNGPLDDE 101
Urease_beta pfam00699
Urease beta subunit; This subunit is known as alpha in Heliobacter.
 3-100 4.79e-66

Urease beta subunit; This subunit is known as alpha in Heliobacter.


Pssm-ID: 459909  Cd Length: 98  Bit Score: 194.91  E-value: 4.79e-66
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488377911    3 PGEIIVKNTEIEINKHHPETVIEVKNTGDRPIQVGSHFHFFEANKALEFDREKAYGKHLDIPAGAAVRFEPGDEKKVQLV 82
Cdd:pfam00699   1 PGEIITGDGDIELNAGRETITLTVTNTGDRPIQVGSHYHFFEVNPALEFDREAAYGMRLDIPAGTAVRFEPGDTKTVTLV 80

                          90
                  ....*....|....*...
gi 488377911   83 EYSGRRKIYGFRGLVDGD 100
Cdd:pfam00699  81 PIGGARVVYGFNGLVNGP 98
Urease_beta cd00407
Urease beta-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis ...
 1-101 5.23e-63

Urease beta-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide. Nickel-dependent ureases are found in bacteria, archaea, fungi and plants. Their primary role is to allow the use of external and internally-generated urea as a nitrogen source. The enzyme consists of three subunits, alpha, beta and gamma, which can exist as separate proteins or can be fused on a single protein chain. The alpha-beta-gamma heterotrimer forms multimers, mainly trimers. The large alpha subunit is the catalytic domain containing an active site with a bi-nickel center complexed by a carbamylated lysine. The beta and gamma subunits play a role in subunit association to form the higher order trimers.


Pssm-ID: 238238  Cd Length: 101  Bit Score: 187.34  E-value: 5.23e-63
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488377911   1 MIPGEIIVKNTEIEINKHHPETVIEVKNTGDRPIQVGSHFHFFEANKALEFDREKAYGKHLDIPAGAAVRFEPGDEKKVQ 80
Cdd:cd00407    1 MIPGEIILKEGDIELNAGREAVTLKVKNTGDRPIQVGSHYHFFEVNPALKFDREKAYGMRLDIPAGTAVRFEPGEEKEVE 80

                         90       100
                 ....*....|....*....|.
gi 488377911  81 LVEYSGRRKIYGFRGLVDGDI 101
Cdd:cd00407   81 LVPIGGKRRVYGFNGLVNGPL 101
ureB PRK13203
urease subunit beta; Reviewed
 1-102 7.76e-62

urease subunit beta; Reviewed


Pssm-ID: 237303  Cd Length: 102  Bit Score: 184.65  E-value: 7.76e-62
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488377911   1 MIPGEIIVKNTEIEINKHHPETVIEVKNTGDRPIQVGSHFHFFEANKALEFDREKAYGKHLDIPAGAAVRFEPGDEKKVQ 80
Cdd:PRK13203   1 MIPGEYITADGEIELNAGRETVTLTVANTGDRPIQVGSHYHFFEVNPALSFDREAARGMRLNIPAGTAVRFEPGQTREVE 80

                         90       100
                 ....*....|....*....|..
gi 488377911  81 LVEYSGRRKIYGFRGLVDGDID 102
Cdd:PRK13203  81 LVPLAGARRVYGFRGKVMGKLD 102
PRK13192 PRK13192
bifunctional urease subunit gamma/beta; Reviewed
 2-99 1.22e-53

bifunctional urease subunit gamma/beta; Reviewed


Pssm-ID: 183886 [Multi-domain]  Cd Length: 208  Bit Score: 167.47  E-value: 1.22e-53
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488377911   2 IPGEIIVKNTEIEINKHHPETVIEVKNTGDRPIQVGSHFHFFEANKALEFDREKAYGKHLDIPAGAAVRFEPGDEKKVQL 81
Cdd:PRK13192 111 YPGEILPGDGEIELNAGRPAVTLDVTNTGDRPIQVGSHFHFFEVNRALRFDRAAAYGMRLDIPAGTAVRFEPGETKEVRL 190

                         90
                 ....*....|....*...
gi 488377911  82 VEYSGRRKIYGFRGLVDG 99
Cdd:PRK13192 191 VPIGGARVVIGFNGLTNG 208
urease_beta TIGR00192
urease, beta subunit; In a number of species, including B.subtilis, Synechocystis, and ...
 1-101 1.72e-48

urease, beta subunit; In a number of species, including B.subtilis, Synechocystis, and Haemophilus influenzae, urease subunits beta and gamma are encoded as separate polypeptides. In Helicobacter pylori UreA and in the fission yeast Schizosaccharomyces pombe, beta subunit-like sequence follows gamma subunit-like sequence in a single chain; the fission yeast protein contains additional C-terminal regions. [Central intermediary metabolism, Nitrogen metabolism]


Pssm-ID: 129296  Cd Length: 101  Bit Score: 150.75  E-value: 1.72e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488377911    1 MIPGEIIVKNTEIEINKHHPETVIEVKNTGDRPIQVGSHFHFFEANKALEFDREKAYGKHLDIPAGAAVRFEPGDEKKVQ 80
Cdd:TIGR00192   1 MIPGELQLAEGDITINEGRKTVSVKVKNTGDRPIQVGSHFHFFEVNRALDFDRELAFGMRLDIPSGTAVRFEPGEEKSVE 80

                          90       100
                  ....*....|....*....|.
gi 488377911   81 LVEYSGRRKIYGFRGLVDGDI 101
Cdd:TIGR00192  81 LVAIGGNRRIYGFNGLVDGQL 101
PRK13986 PRK13986
urease subunit beta;
3-104 1.20e-45

urease subunit beta;


Pssm-ID: 184439 [Multi-domain]  Cd Length: 225  Bit Score: 147.67  E-value: 1.20e-45
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488377911   3 PGEIIVKNTEIEINKHHPETVIEVKNTGDRPIQVGSHFHFFEANKALEFDREKAYGKHLDIPAGAAVRFEPGDEKKVQLV 82
Cdd:PRK13986 108 PGELFLKDEDITINAGKKAVSVKVKNVGDRPVQVGSHFHFFEVNRCLEFDREKAFGKRLDIASGTAVRFEPGEEKSVELI 187

                         90       100
                 ....*....|....*....|..
gi 488377911  83 EYSGRRKIYGFRGLVDGDIDEE 104
Cdd:PRK13986 188 DIGGNRRIFGFNALVNRQADNE 209
PLN02303 PLN02303
urease
 1-105 8.41e-41

urease


Pssm-ID: 215172 [Multi-domain]  Cd Length: 837  Bit Score: 143.74  E-value: 8.41e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488377911   1 MIPGEIIVKNTEIEINKHHPETVIEVKNTGDRPIQVGSHFHFFEANKALEFDREKAYGKHLDIPAGAAVRFEPGDEKKVQ 80
Cdd:PLN02303 131 PIPGEIITGDGSIIINAGRKAVKLKVTNTGDRPIQVGSHYHFIETNPYLVFDRRKAYGMRLNIPAGTAVRFEPGETKTVT 210

                         90       100
                 ....*....|....*....|....*
gi 488377911  81 LVEYSGRRKIYGFRGLVDGDIDEER 105
Cdd:PLN02303 211 LVSIGGNKVIRGGNGIVDGPVDDSR 235
ureB PRK13204
urease subunit beta; Reviewed
 4-99 5.74e-40

urease subunit beta; Reviewed


Pssm-ID: 171902 [Multi-domain]  Cd Length: 159  Bit Score: 131.05  E-value: 5.74e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488377911   4 GEIIVKNTEIEINKHHPETVIEVKNTGDRPIQVGSHFHFFEANKALEFDREKAYGKHLDIPAGAAVRFEPGDEKKVQLVE 83
Cdd:PRK13204  27 GGYVLAKDPIEINQGRPRTTLTVRNTGDRPIQIGSHFHFFEVNRYLEFDRSKAFGLRLDIPANTAVRFEPGDEKEVTLVP 106

                         90
                 ....*....|....*.
gi 488377911  84 YSGRRKIYGFRGLVDG 99
Cdd:PRK13204 107 FAGKRFIFGFNNLVDG 122
ureB PRK13198
urease subunit beta; Reviewed
 4-99 2.55e-39

urease subunit beta; Reviewed


Pssm-ID: 171897 [Multi-domain]  Cd Length: 158  Bit Score: 129.42  E-value: 2.55e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488377911   4 GEIIVKNTEIEINKHHPETVIEVKNTGDRPIQVGSHFHFFEANKALEFDREKAYGKHLDIPAGAAVRFEPGDEKKVQLVE 83
Cdd:PRK13198  32 GGLVLAETPITFNENKPVTKVKVRNTGDRPIQVGSHFHFFEVNRALEFDRAAAYGKRLNISSTTAIRFEPGDETEVPLIP 111

                         90
                 ....*....|....*.
gi 488377911  84 YSGRRKIYGFRGLVDG 99
Cdd:PRK13198 112 FGGKQTLYGFNNLVDG 127
ureB PRK13205
urease subunit beta; Reviewed
 1-106 2.68e-33

urease subunit beta; Reviewed


Pssm-ID: 106174 [Multi-domain]  Cd Length: 162  Bit Score: 114.51  E-value: 2.68e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488377911   1 MIPGEIIVKNTEIEINKHHPETVIEVKNTGDRPIQVGSHFHFFEANKALEFDREKAYGKHLDIPAGAAVRFEPGDEKKVQ 80
Cdd:PRK13205   1 MIPGEYILSSESLTGNVGREAKTIEIINTGDRPVQIGSHFHFAEVNPSISFDRSEGYGFRLDIPSGTAVRLEPGDARTVN 80

                         90       100
                 ....*....|....*....|....*.
gi 488377911  81 LVEYSGRRKIYGFRGLVDGDIDEERV 106
Cdd:PRK13205  81 LVAIGGDRIVAGFRDLVDGPLEDLKV 106
ureB PRK13202
urease subunit beta; Reviewed
 1-93 7.45e-27

urease subunit beta; Reviewed


Pssm-ID: 106171  Cd Length: 104  Bit Score: 95.91  E-value: 7.45e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488377911   1 MIPGEIIVKNTEIEINKHHPETV-IEVKNTGDRPIQVGSHFHFFEANKALEFDREKAYGKHLDIPAGAAVRFEPGDEKKV 79
Cdd:PRK13202   1 MIPGEIFYGSGDIEMNAAALSRLqMRIINAGDRPVQVGSHVHLPQANRALSFDRATAHGYRLDIPAATAVRFEPGIPQIV 80

                         90
                 ....*....|....
gi 488377911  80 QLVEYSGRRKIYGF 93
Cdd:PRK13202  81 GLVPLGGRREVPGL 94
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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