|
Name |
Accession |
Description |
Interval |
E-value |
| SpoU |
COG0566 |
tRNA G18 (ribose-2'-O)-methylase SpoU [Translation, ribosomal structure and biogenesis]; tRNA ... |
4-244 |
1.61e-83 |
|
tRNA G18 (ribose-2'-O)-methylase SpoU [Translation, ribosomal structure and biogenesis]; tRNA G18 (ribose-2'-O)-methylase SpoU is part of the Pathway/BioSystem: tRNA modification
Pssm-ID: 440332 [Multi-domain] Cd Length: 265 Bit Score: 250.11 E-value: 1.61e-83
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488388038 4 ITSAQNSKIKNANKLKKKRERDKTGLALIEGIHLIEEAYQSQIEVIQLFIVDP--DRMSSsIVDYAKE----VYQINLKV 77
Cdd:COG0566 1 MTSPSNPRVKDLRKLRDKKYREEEGLFLAEGRHAVEEALKAGREIEELLVTEGalDRLAE-LLALAKAagipVYEVSREV 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488388038 78 AEALSGTVTPQGFFAIIKKPTY--------DKTQAKQVLLIDRIQDPGNLGTLIRTADAAGLDLIVMEKGTADPFQDKVI 149
Cdd:COG0566 80 LDKLSGTETHQGVLAVVRPPEYadledllaEAGEPPLLLVLDGVQDPGNLGAILRSAAAFGVDGVILPKRRADPYNPKVV 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488388038 150 RASQGSIFHIPVI-FDDINNYIHQF---NGPVYGTALENAVSFNDVEAQANFALVLGNEGEGVNPDLLKETTQNLTIPIY 225
Cdd:COG0566 160 RASAGALFHVPVArVTNLADALEELkeaGFWVVGTDLDGEASLYEVDLPGPVALVLGNEGKGLSRLVLEACDELVRIPMA 239
|
250
....*....|....*....
gi 488388038 226 GKAESLNVAIAGSILMYQL 244
Cdd:COG0566 240 GGVESLNVAVAAAILLYEA 258
|
|
| SpoU-like_rRNA-MTase |
cd18095 |
SAM-dependent rRNA methylase related to SpoU-TrmH; RNA 2'-O ribose methyltransferase catalyzes ... |
107-244 |
3.47e-63 |
|
SAM-dependent rRNA methylase related to SpoU-TrmH; RNA 2'-O ribose methyltransferase catalyzes the methyltransfer from S-adenosyl-L-methionine (AdoMet) to the 2'-OH group of ribose in tRNA or rRNA. It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349968 Cd Length: 143 Bit Score: 193.80 E-value: 3.47e-63
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488388038 107 VLLIDRIQDPGNLGTLIRTADAAGLDLIVMEKGTADPFQDKVIRASQGSIFHIPVIFDDIN----NYIHQFNGPVYGTAL 182
Cdd:cd18095 2 VLVLDGVQDPGNLGTIIRTAAAFGVDGVILSKGTVDPYNPKVVRASMGALFRLPIIRVDDLeellEELKEAGYKVVAADL 81
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 488388038 183 ENAVSFNDVEAQANFALVLGNEGEGVNPDLLKETTQNLTIPIYGKAESLNVAIAGSILMYQL 244
Cdd:cd18095 82 DGGSSLYDLDLPKPVALVLGNEGNGLSDELLELCDKRVTIPMSGGVESLNVAVAAAILLYEL 143
|
|
| SpoU_methylase |
pfam00588 |
SpoU rRNA Methylase family; This family of proteins probably use S-AdoMet. |
107-242 |
6.87e-44 |
|
SpoU rRNA Methylase family; This family of proteins probably use S-AdoMet.
Pssm-ID: 425768 Cd Length: 142 Bit Score: 144.60 E-value: 6.87e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488388038 107 VLLIDRIQDPGNLGTLIRTADAAGLD-LIVMEKGTADPFQDKVIRASQGSIFHIPV-IFDDINNYIHQF---NGPVYGTA 181
Cdd:pfam00588 3 VVVLDNIQDPGNLGAIIRTAAAFGADgLILVEPRSADPYNPKAIRASAGALFHLPLvVVDNLEEALKDLkeaGYAVVATS 82
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 488388038 182 LeNAVSFNDVEAQANFALVLGNEGEGVNPDLLKETTQNLTIPIYGKAESLNVAIAGSILMY 242
Cdd:pfam00588 83 L-GGKSLYEIDFPKKVALVFGNEGTGLSNEVLELCDRLVRIPMSGDVESLNVAVAAAIALY 142
|
|
| rRNA_methyl_3 |
TIGR00186 |
rRNA methylase, putative, group 3; this is part of the trmH (spoU) family of rRNA methylases ... |
29-245 |
2.21e-29 |
|
rRNA methylase, putative, group 3; this is part of the trmH (spoU) family of rRNA methylases [Protein synthesis, tRNA and rRNA base modification]
Pssm-ID: 129290 [Multi-domain] Cd Length: 237 Bit Score: 110.13 E-value: 2.21e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488388038 29 LALIEGIHLIEEAYQSQIEVIQLFIVDPDRMSSsIVDYAKE----VYQINLKVAEALSGTVTPQGFFAIIKKPTY----- 99
Cdd:TIGR00186 1 QEYLYGKNAVLEALLNQQRVFILKGLESKRLKK-LIQLAKKqginIQLVDRQKLDQLTKGGNHQGIAAKVKPILYkdlnd 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488388038 100 --DKTQAKQ---VLLIDRIQDPGNLGTLIRTADAAGLDLIVMEKGTADPFQDKVIRASQGSIFHIPVI-FDDINNYI--- 170
Cdd:TIGR00186 80 lyKTAKSKKqpfLLILDEITDPHNLGAILRTAEAFGVDGVILPKRRSAPLNSTVVKTSSGAVEYVPLArVTNLSRTItkl 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 488388038 171 HQFNGPVYGTALENAVSFNDVEAQANFALVLGNEGEGVNPDLLKETTQNLTIPIYGKAESLNVAIAGSILMYQLK 245
Cdd:TIGR00186 160 KESGFWTVGTDLDAQDTLYQVKLTKPLALVVGNEGEGVSRLIKENCDFLIKIPMAGKVDSLNVSVAAGILLFEIK 234
|
|
| PRK11181 |
PRK11181 |
23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB; |
31-243 |
3.99e-12 |
|
23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB;
Pssm-ID: 183021 [Multi-domain] Cd Length: 244 Bit Score: 63.83 E-value: 3.99e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488388038 31 LIEGIH----LIEEAYQSQIEVIQLFIVDPDRMSSsIVDYAKE----VYQINLKVAEALSGTVTPQGFFAIIKK-PTY-- 99
Cdd:PRK11181 4 IIYGIHavqaLLERAPERFIEVFVLKGREDKRLLP-LINELEAqgivIQLANRQTLDEKAEGAVHQGIIARVKPgRQLqe 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488388038 100 -------DKTQAKQVLLIDRIQDPGNLGTLIRTADAAGLDLIVMEKGTADPFQDKVIRASQGSIFHIPVIfdDINN---- 168
Cdd:PRK11181 83 ndlpdllASLEQPFLLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACGAAETVPLI--RVTNlart 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 488388038 169 --YIHQFNGPVYGTALENAVSFNDVEAQANFALVLGNEGEGVNpDLLKETTQNL-TIPIYGKAESLNVAIAGSILMYQ 243
Cdd:PRK11181 161 mrMLQEKNIWIVGTAGEADHTLYQSKLTGPLALVMGAEGEGMR-RLTREHCDELiSIPMAGSVSSLNVSVATGICLFE 237
|
|
| SpoU_sub_bind |
smart00967 |
RNA 2'-O ribose methyltransferase substrate binding; This domain is a RNA 2'-O ribose ... |
32-96 |
6.23e-11 |
|
RNA 2'-O ribose methyltransferase substrate binding; This domain is a RNA 2'-O ribose methyltransferase substrate binding domain.
Pssm-ID: 214943 [Multi-domain] Cd Length: 70 Bit Score: 56.78 E-value: 6.23e-11
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488388038 32 IEGIHLIEEAYQSQIEVIQLFIV-DPDRMSSSIVDYAKE----VYQINLKVAEALSGTVTPQGFFAIIKK 96
Cdd:smart00967 1 IEGRHAVEEALKSGRRIKELYLTeGRAERLKELLKLAKErgikVIEVSKKELDKLSGTANHQGVVAVVKP 70
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| SpoU |
COG0566 |
tRNA G18 (ribose-2'-O)-methylase SpoU [Translation, ribosomal structure and biogenesis]; tRNA ... |
4-244 |
1.61e-83 |
|
tRNA G18 (ribose-2'-O)-methylase SpoU [Translation, ribosomal structure and biogenesis]; tRNA G18 (ribose-2'-O)-methylase SpoU is part of the Pathway/BioSystem: tRNA modification
Pssm-ID: 440332 [Multi-domain] Cd Length: 265 Bit Score: 250.11 E-value: 1.61e-83
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488388038 4 ITSAQNSKIKNANKLKKKRERDKTGLALIEGIHLIEEAYQSQIEVIQLFIVDP--DRMSSsIVDYAKE----VYQINLKV 77
Cdd:COG0566 1 MTSPSNPRVKDLRKLRDKKYREEEGLFLAEGRHAVEEALKAGREIEELLVTEGalDRLAE-LLALAKAagipVYEVSREV 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488388038 78 AEALSGTVTPQGFFAIIKKPTY--------DKTQAKQVLLIDRIQDPGNLGTLIRTADAAGLDLIVMEKGTADPFQDKVI 149
Cdd:COG0566 80 LDKLSGTETHQGVLAVVRPPEYadledllaEAGEPPLLLVLDGVQDPGNLGAILRSAAAFGVDGVILPKRRADPYNPKVV 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488388038 150 RASQGSIFHIPVI-FDDINNYIHQF---NGPVYGTALENAVSFNDVEAQANFALVLGNEGEGVNPDLLKETTQNLTIPIY 225
Cdd:COG0566 160 RASAGALFHVPVArVTNLADALEELkeaGFWVVGTDLDGEASLYEVDLPGPVALVLGNEGKGLSRLVLEACDELVRIPMA 239
|
250
....*....|....*....
gi 488388038 226 GKAESLNVAIAGSILMYQL 244
Cdd:COG0566 240 GGVESLNVAVAAAILLYEA 258
|
|
| SpoU-like_rRNA-MTase |
cd18095 |
SAM-dependent rRNA methylase related to SpoU-TrmH; RNA 2'-O ribose methyltransferase catalyzes ... |
107-244 |
3.47e-63 |
|
SAM-dependent rRNA methylase related to SpoU-TrmH; RNA 2'-O ribose methyltransferase catalyzes the methyltransfer from S-adenosyl-L-methionine (AdoMet) to the 2'-OH group of ribose in tRNA or rRNA. It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349968 Cd Length: 143 Bit Score: 193.80 E-value: 3.47e-63
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488388038 107 VLLIDRIQDPGNLGTLIRTADAAGLDLIVMEKGTADPFQDKVIRASQGSIFHIPVIFDDIN----NYIHQFNGPVYGTAL 182
Cdd:cd18095 2 VLVLDGVQDPGNLGTIIRTAAAFGVDGVILSKGTVDPYNPKVVRASMGALFRLPIIRVDDLeellEELKEAGYKVVAADL 81
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 488388038 183 ENAVSFNDVEAQANFALVLGNEGEGVNPDLLKETTQNLTIPIYGKAESLNVAIAGSILMYQL 244
Cdd:cd18095 82 DGGSSLYDLDLPKPVALVLGNEGNGLSDELLELCDKRVTIPMSGGVESLNVAVAAAILLYEL 143
|
|
| SpoU-like_RNA-MTase |
cd18109 |
SAM-dependent RNA methylase related to SpoU-TrmH; RNA 2'-O ribose methyltransferase catalyzes ... |
107-244 |
7.15e-47 |
|
SAM-dependent RNA methylase related to SpoU-TrmH; RNA 2'-O ribose methyltransferase catalyzes the methyltransfer from S-adenosyl-L-methionine (AdoMet) to the 2'-OH group of ribose in tRNA or rRNA. It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349982 Cd Length: 141 Bit Score: 152.31 E-value: 7.15e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488388038 107 VLLIDRIQDPGNLGTLIRTADAAGLDLIVMEKGTADPFQDKVIRASQGSIFHIPVIFDDINNYI--HQFNGPVYGTALE- 183
Cdd:cd18109 2 TLALDGIQDPGNLGTIIRTADWFGIRQIICSPDTVDPYNPKVVQASMGSIFRVQIHYTDLPALLaeLKKAFPVYGADLDg 81
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 488388038 184 NAVSFNDVEAQAnfALVLGNEGEGVNPDLLKETTQNLTIPIYGK-AESLNVAIAGSILMYQL 244
Cdd:cd18109 82 ENLYEFTLPEKG--ILVMGNEGHGISPEVLKLLTHRLTIPRYGKgAESLNVAVATAILLSEF 141
|
|
| SpoU_methylase |
pfam00588 |
SpoU rRNA Methylase family; This family of proteins probably use S-AdoMet. |
107-242 |
6.87e-44 |
|
SpoU rRNA Methylase family; This family of proteins probably use S-AdoMet.
Pssm-ID: 425768 Cd Length: 142 Bit Score: 144.60 E-value: 6.87e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488388038 107 VLLIDRIQDPGNLGTLIRTADAAGLD-LIVMEKGTADPFQDKVIRASQGSIFHIPV-IFDDINNYIHQF---NGPVYGTA 181
Cdd:pfam00588 3 VVVLDNIQDPGNLGAIIRTAAAFGADgLILVEPRSADPYNPKAIRASAGALFHLPLvVVDNLEEALKDLkeaGYAVVATS 82
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 488388038 182 LeNAVSFNDVEAQANFALVLGNEGEGVNPDLLKETTQNLTIPIYGKAESLNVAIAGSILMY 242
Cdd:pfam00588 83 L-GGKSLYEIDFPKKVALVFGNEGTGLSNEVLELCDRLVRIPMSGDVESLNVAVAAAIALY 142
|
|
| SpoU-like_RlmB |
cd18103 |
SAM-dependent rRNA methylase related to RlmB; 23S rRNA-M2G2251-MTase RlmB catalyzes the ... |
107-244 |
3.64e-38 |
|
SAM-dependent rRNA methylase related to RlmB; 23S rRNA-M2G2251-MTase RlmB catalyzes the methylation of guanosine 2251, a modification conserved in the peptidyltransferase domain of 23S rRNA. It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349976 Cd Length: 143 Bit Score: 130.20 E-value: 3.64e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488388038 107 VLLIDRIQDPGNLGTLIRTADAAGLDLIVMEKGTADPFQDKVIRASQGSIFHIPVIF-DDINN---YIHQFNGPVYGTAL 182
Cdd:cd18103 2 LLILDGITDPHNLGAIIRSAEAFGVDGVIIPKRRSAPLTPTVAKASAGALEHLPIARvTNLARaleELKEAGFWIYGADG 81
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 488388038 183 ENAVSFNDVEAQANFALVLGNEGEGVNPDLLKETTQNLTIPIYGKAESLNVAIAGSILMYQL 244
Cdd:cd18103 82 EAEKSLYDVDLTGPLALVLGSEGKGLRRLVLKNCDFLVKIPMAGKVDSLNVSVAAGIILYEI 143
|
|
| SpoU-like_family |
cd18082 |
SAM-dependent rRNA or tRNA methylase related to SpoU; RNA 2'-O ribose methyltransferase ... |
107-244 |
3.18e-37 |
|
SAM-dependent rRNA or tRNA methylase related to SpoU; RNA 2'-O ribose methyltransferase catalyzes the methyltransfer from S-adenosyl-L-methionine (AdoMet) to the 2'-OH group of ribose in tRNA or rRNA. It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349955 Cd Length: 145 Bit Score: 127.73 E-value: 3.18e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488388038 107 VLLIDRIQDPGNLGTLIRTADAAGLDLIVMEKGTADPFQDKVIRASQGSIFHIP-VIFDDINNYIHQF---NGPVYGTAL 182
Cdd:cd18082 1 HLVLDNIRSPGNIGSIFRTADAFGVEKIYLVGPTADIFDPKAKRTSRGTHFSVPyERVDNFEEYLKSLkeeGYPLIGLEL 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 488388038 183 EN---AVSFNDVEAQANFALVLGNEGEGVNPDLLKETTQNLTIPIYGKAESLNVAIAGSILMYQL 244
Cdd:cd18082 81 TDgsiPLSEFKFKKPKKIALIFGNERSGLSPELLALCDYTVHIPMSGKNSSLNVSVATGIALYEF 145
|
|
| SpoU-like_RNA-MTase |
cd18104 |
SAM-dependent RNA methylase related to SpoU-TrmH; RNA 2'-O ribose methyltransferase catalyzes ... |
107-242 |
1.79e-35 |
|
SAM-dependent RNA methylase related to SpoU-TrmH; RNA 2'-O ribose methyltransferase catalyzes the methyltransfer from S-adenosyl-L-methionine (AdoMet) to the 2'-OH group of ribose in tRNA or rRNA. It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349977 Cd Length: 146 Bit Score: 123.46 E-value: 1.79e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488388038 107 VLLIDRIQDPGNLGTLIRTADAAGLDLIVMEKGTADPFQDKVIRASQGSIFHIPVI---FDDINNYIHQFNGPVYGTALE 183
Cdd:cd18104 2 ILVLEGLEKPGNLGAILRSADAAGADAVILCDPKTDLFNPNVIRASLGAVFTLPVAeasSEETLAWLKENKIRILATTPK 81
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 488388038 184 NAVSFNDVEAQANFALVLGNEGEGVNPDLLKETTQNLTIPIYGKAESLNVAIAGSILMY 242
Cdd:cd18104 82 AEKLYYEADLRGPIAIVVGSESEGLSEFWLKAADERVRIPMAGQADSLNVSVAAAILLY 140
|
|
| rRNA_methyl_3 |
TIGR00186 |
rRNA methylase, putative, group 3; this is part of the trmH (spoU) family of rRNA methylases ... |
29-245 |
2.21e-29 |
|
rRNA methylase, putative, group 3; this is part of the trmH (spoU) family of rRNA methylases [Protein synthesis, tRNA and rRNA base modification]
Pssm-ID: 129290 [Multi-domain] Cd Length: 237 Bit Score: 110.13 E-value: 2.21e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488388038 29 LALIEGIHLIEEAYQSQIEVIQLFIVDPDRMSSsIVDYAKE----VYQINLKVAEALSGTVTPQGFFAIIKKPTY----- 99
Cdd:TIGR00186 1 QEYLYGKNAVLEALLNQQRVFILKGLESKRLKK-LIQLAKKqginIQLVDRQKLDQLTKGGNHQGIAAKVKPILYkdlnd 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488388038 100 --DKTQAKQ---VLLIDRIQDPGNLGTLIRTADAAGLDLIVMEKGTADPFQDKVIRASQGSIFHIPVI-FDDINNYI--- 170
Cdd:TIGR00186 80 lyKTAKSKKqpfLLILDEITDPHNLGAILRTAEAFGVDGVILPKRRSAPLNSTVVKTSSGAVEYVPLArVTNLSRTItkl 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 488388038 171 HQFNGPVYGTALENAVSFNDVEAQANFALVLGNEGEGVNPDLLKETTQNLTIPIYGKAESLNVAIAGSILMYQLK 245
Cdd:TIGR00186 160 KESGFWTVGTDLDAQDTLYQVKLTKPLALVVGNEGEGVSRLIKENCDFLIKIPMAGKVDSLNVSVAAGILLFEIK 234
|
|
| SpoU-like_AviRb |
cd18107 |
SAM-dependent rRNA methylase related to AviRb; AviRb from Streptomyces viridochromogenes ... |
107-243 |
8.18e-29 |
|
SAM-dependent rRNA methylase related to AviRb; AviRb from Streptomyces viridochromogenes methylates the 2'-O atom of U2479 of the 23S ribosomal RNA. AviRb is a member of the SPOUT (SpoU-TrmD) methyltransferase (MTase) superfamily, a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349980 Cd Length: 148 Bit Score: 106.32 E-value: 8.18e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488388038 107 VLLIDRIQDPGNLGTLIRTADAAGLDLIVMEKGTADPFQDKVIRASQGSIFHIPVIFDDINNYIHQF---------NGPV 177
Cdd:cd18107 2 VVLFDRPTSPGNLGTIIRSADALGAHGLVVTGHAADVYDPKTIRASTGSLFSLPIVRVPSNRELEDWvearkargtPLQL 81
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 488388038 178 YGTALENAVSFNDVEAQANFALVLGNEGEGVNPDLLKETTQNLTIPIYGKAESLNVAIAGSILMYQ 243
Cdd:cd18107 82 VGTDEHGDHQIADHDFTRPTLLLIGNETAGLSAAWRELCDETVSIPMAGSASSLNAACAASIFLYE 147
|
|
| SpoU-like_RNMTL1 |
cd18106 |
SAM-dependent rRNA methylase related to RNMTL1; RNMTL1 (also known as HC90, MRM3 and RMTL1) ... |
107-244 |
5.71e-28 |
|
SAM-dependent rRNA methylase related to RNMTL1; RNMTL1 (also known as HC90, MRM3 and RMTL1) catalyzes the methylation of 2'-O-ribose residues G1370 to GmG residue of the mitochondrial 16S rRNA. RNMTL1 is a member of the SPOUT (SpoU-TrmD) methyltransferase (MTase) superfamily, a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349979 Cd Length: 148 Bit Score: 103.87 E-value: 5.71e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488388038 107 VLLI-DRIQDPGNLGTLIRTADAAGLDLIVMEKGTADPFQDKVIRASQGSIFHIPVI----FDDINNYI----HQFngpV 177
Cdd:cd18106 1 LTVIcDNIRDPGNLGSILRSAAAAGCSKVLLTKGCVDPWEPKVLRAGAGAHFRLPIYgnlsWDDIPNYLpddsKVF---L 77
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 488388038 178 YGTALEnAVSFNDVEAQ-ANFALVLGNEGEGVNPDLLK----ETTQNLTIPIYGKAESLNVAIAGSILMYQL 244
Cdd:cd18106 78 ADNNLP-VQPYDSIDYCsGPIVLVIGGETHGVSPEAYKlahsTGGSRVHIPLANGVDSLNSAVAASILLFEM 148
|
|
| SpoU-like_MRM1 |
cd18105 |
SAM-dependent rRNA methylase related to MRM1; MRM1 catalyzes the methylation of 2'-O-ribose ... |
107-244 |
1.95e-23 |
|
SAM-dependent rRNA methylase related to MRM1; MRM1 catalyzes the methylation of 2'-O-ribose residues G1145 to GmG residue of the mitochondrial 16S rRNA. MRM1 is a member of the SPOUT (SpoU-TrmD) methyltransferase (MTase) superfamily, a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349978 Cd Length: 158 Bit Score: 92.58 E-value: 1.95e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488388038 107 VLLIDRIQDPGNLGTLIRTADAAGLDLIVM-EKGTAdPFQDKVIRASQGSIFHIPVI-FDDINNYIH--QFNG-PVYGTA 181
Cdd:cd18105 2 WLLLDEITDPQNLGAILRSAYFLGVDGVVVsSKNSA-PLSPVVSKASAGALELMPIYsVDNLASFLKssKENGwKVVGTS 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 488388038 182 LE----------NAVSFNDVEAQANFALVLGNEGEGVNPDLLKETTQNLTIPIYGKAE-----SLNVAIAGSILMYQL 244
Cdd:cd18105 81 APpsassdkktiPANELSELLLEKPTILVLGNEGRGLRTNIKNLCDYLVSIPGGRSAEnpgvdSLNVSVAAGILLHSL 158
|
|
| SpoU-like_TrmH |
cd18092 |
SAM-dependent tRNA methylase related to TrmH; TrmH catalyzes the transfer of the methyl group ... |
107-245 |
7.59e-22 |
|
SAM-dependent tRNA methylase related to TrmH; TrmH catalyzes the transfer of the methyl group from S-adenosyl-L-methionine (AdoMet) to the 2'-OH group of the ribose of the universally conserved guanosine 18 (G18) position in tRNA. It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349965 Cd Length: 162 Bit Score: 88.29 E-value: 7.59e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488388038 107 VLLIDRIQDPGNLGTLIRTADAAGL-DL-IVMEKGTADPFQdkviRASQGSIFHIPVI-FDDINNYIHQF--NGP-VYGT 180
Cdd:cd18092 18 TVVLENVHDPHNASAVLRTCDAFGVqDVhVIEPKNKFKKNR----GVAMGADKWLDVHrHDSTEECLAALkeQGYrIVAT 93
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 488388038 181 AL-ENAVSFNDVEAQANFALVLGNEGEGVNPDLLKETTQNLTIPIYGKAESLNVAIAGSILMYQLK 245
Cdd:cd18092 94 SLsPDAVPLDELDYTRPTALVFGNEKDGVSEEALAAADERVYIPMYGFVESLNVSVAAAIILYELQ 159
|
|
| SpoU-like |
cd18097 |
SAM-dependent rRNA or tRNA methylase related to SpoU; RNA 2'-O ribose methyltransferase ... |
107-244 |
5.31e-21 |
|
SAM-dependent rRNA or tRNA methylase related to SpoU; RNA 2'-O ribose methyltransferase catalyzes the methyltransfer from S-adenosyl-L-methionine (AdoMet) to the 2'-OH group of ribose in tRNA or rRNA. It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349970 Cd Length: 144 Bit Score: 85.69 E-value: 5.31e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488388038 107 VLLIDRIQDPGNLGTLIRTADAAGLDLIVMEKGTADPFQDKVIRASQGSIFHIPV-IFDDINNYIHQFNGPVYG-TALE- 183
Cdd:cd18097 2 VVVLDNLRSAHNVGSIFRTADAAGVEKIYLCGYTPTPPHPKVAKTALGAEESVPWeHFEDTLEAVRALKARGYTiIALEt 81
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 488388038 184 --NAVSFNDVEAQANFALVLGNEGEGVNPDLLKETTQNLTIPIYGKAESLNVAIAGSILMYQL 244
Cdd:cd18097 82 teNSVPLHEARLPRPLALVLGNEVRGVSPEVLALCDAVVEIPMFGRKNSLNVAVAAAVALYEL 144
|
|
| SpoU-like |
cd18096 |
SAM-dependent rRNA or tRNA methylase related to SpoU; RNA 2'-O ribose methyltransferase ... |
107-243 |
3.25e-16 |
|
SAM-dependent rRNA or tRNA methylase related to SpoU; RNA 2'-O ribose methyltransferase catalyzes the methyltransfer from S-adenosyl-L-methionine (AdoMet) to the 2'-OH group of ribose in tRNA or rRNA. It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349969 Cd Length: 140 Bit Score: 73.02 E-value: 3.25e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488388038 107 VLLIDRIQDPGNLGTLIRTADAAGL-DLIVMEKGTADPFqdkvirASQGSIFHIPVIF----DDINNYIHQFNGPVYGT- 180
Cdd:cd18096 2 YLVLHNVAKRHNIGTIVRSANAFGVkEVHLVGRRKFNPF------GAMGTDRHVKFRHfdtlAEAKEYLKERGIRLVGVe 75
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 488388038 181 ALENAVSFNDVEAQANFALVLGNEGEGVNPDLLKETTQNLTIPIYGKA-ESLNVAIAGSILMYQ 243
Cdd:cd18096 76 IVPGAEPIETHPFPGDTAFVLGNEGTGLSDEQLAICDGFVYIPQYGSGtASLNVSVAASIVLHH 139
|
|
| SpoU-like_TRM3-like |
cd18091 |
SAM-dependent tRNA methylase related to TRM3; Yeast tRNA (guanosine(18)-2'-O) ... |
109-243 |
5.68e-16 |
|
SAM-dependent tRNA methylase related to TRM3; Yeast tRNA (guanosine(18)-2'-O)-methyltransferase TRM3 catalyzes the formation of 2'-O-methylguanosine at position 18 (Gm18) in various tRNAs. TRM3 is similar to C-terminal domain of TAR (HIV-1) RNA binding protein 1 (TARBP1), a protein binding to TAR, which functions as a RNA regulatory signal by forming a stable stem-loop structure to which transactivator protein Tat binds. The role of TARBP1 is believed to be to disengage RNA polymerase II from TAR during transcriptional elongation. TRM3 and the C-terminal methyltransferase domain of TARBP1 are members of the SPOUT methyltransferase superfamily.
Pssm-ID: 349964 Cd Length: 145 Bit Score: 72.18 E-value: 5.68e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488388038 109 LIDRiqdPGNLGTLIRTADAAGLD-LIVMEKGTADPFQDKVIRASqgSIFHIP---VIFDDINNYIHQFNGPVYG-TALE 183
Cdd:cd18091 7 LIDK---PPNLGGLCRTCEIFGVSkLVLPNLAVVEDKQFKALSVS--AEKWLPieeVKPEDLLPYLKEKKQEGYTiVGLE 81
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 488388038 184 ---NAVSFNDVEAQANFALVLGNEGEGVNPDLLKETTQNLTIPIYGKAESLNVAIAGSILMYQ 243
Cdd:cd18091 82 qtaNSVSLHDFQFPKKTVLVLGNEKEGIPAELLSLLDVCVEIPQLGVIRSLNVHVSGAIAIYE 144
|
|
| SpoU-like_NHR |
cd18108 |
Nosiheptide-resistance methyltransferase (NHR); Nosiheptide-resistance methyltransferase (NHR) ... |
107-243 |
1.57e-14 |
|
Nosiheptide-resistance methyltransferase (NHR); Nosiheptide-resistance methyltransferase (NHR) confers resistance to the thiazole antibiotic nosiheptide via catalyzing 2'O-methylation of 23S rRNA at the nucleotide A1067. NHR is a member of the SPOUT (SpoU-TrmD) methyltransferase (MTase) superfamily, a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349981 Cd Length: 144 Bit Score: 68.66 E-value: 1.57e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488388038 107 VLLIDRIQDPGNLGTLIRTA---DAAGLdlIVMEKGTADPFQDKVIRASQGSIFHIPVIF---DDINNYIHQFNGPVYGT 180
Cdd:cd18108 2 VVVLDGVRIVGNIGAIVRTSlalGAAGI--VLVDSDLATVADRRLLRASRGYVFSLPVVLadrEEAVAFLRDNDIPLMTL 79
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 488388038 181 ALENAVSFNDVEAQAN-FALVLGNEGEGVNPDLLKETTQNLTIPIYGKAESLNVAIAGSILMYQ 243
Cdd:cd18108 80 DADGDVPVKELGDRPDrLALVFGSEKGGPSGLFEEAAAGTVSIPMSSSTESLNVSVSAGIALHE 143
|
|
| PRK11181 |
PRK11181 |
23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB; |
31-243 |
3.99e-12 |
|
23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB;
Pssm-ID: 183021 [Multi-domain] Cd Length: 244 Bit Score: 63.83 E-value: 3.99e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488388038 31 LIEGIH----LIEEAYQSQIEVIQLFIVDPDRMSSsIVDYAKE----VYQINLKVAEALSGTVTPQGFFAIIKK-PTY-- 99
Cdd:PRK11181 4 IIYGIHavqaLLERAPERFIEVFVLKGREDKRLLP-LINELEAqgivIQLANRQTLDEKAEGAVHQGIIARVKPgRQLqe 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488388038 100 -------DKTQAKQVLLIDRIQDPGNLGTLIRTADAAGLDLIVMEKGTADPFQDKVIRASQGSIFHIPVIfdDINN---- 168
Cdd:PRK11181 83 ndlpdllASLEQPFLLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACGAAETVPLI--RVTNlart 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 488388038 169 --YIHQFNGPVYGTALENAVSFNDVEAQANFALVLGNEGEGVNpDLLKETTQNL-TIPIYGKAESLNVAIAGSILMYQ 243
Cdd:PRK11181 161 mrMLQEKNIWIVGTAGEADHTLYQSKLTGPLALVMGAEGEGMR-RLTREHCDELiSIPMAGSVSSLNVSVATGICLFE 237
|
|
| SpoU_sub_bind |
smart00967 |
RNA 2'-O ribose methyltransferase substrate binding; This domain is a RNA 2'-O ribose ... |
32-96 |
6.23e-11 |
|
RNA 2'-O ribose methyltransferase substrate binding; This domain is a RNA 2'-O ribose methyltransferase substrate binding domain.
Pssm-ID: 214943 [Multi-domain] Cd Length: 70 Bit Score: 56.78 E-value: 6.23e-11
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488388038 32 IEGIHLIEEAYQSQIEVIQLFIV-DPDRMSSSIVDYAKE----VYQINLKVAEALSGTVTPQGFFAIIKK 96
Cdd:smart00967 1 IEGRHAVEEALKSGRRIKELYLTeGRAERLKELLKLAKErgikVIEVSKKELDKLSGTANHQGVVAVVKP 70
|
|
| SpoU_sub_bind |
pfam08032 |
RNA 2'-O ribose methyltransferase substrate binding; This domain is a RNA 2'-O ribose ... |
31-98 |
7.01e-11 |
|
RNA 2'-O ribose methyltransferase substrate binding; This domain is a RNA 2'-O ribose methyltransferase substrate binding domain.
Pssm-ID: 429793 [Multi-domain] Cd Length: 74 Bit Score: 56.48 E-value: 7.01e-11
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 488388038 31 LIEGIHLIEEAYQSQIEVIQLFIVDP--DRMSSSIVDYAKE----VYQINLKVAEALSGTVTPQGFFAIIKKPT 98
Cdd:pfam08032 1 LIYGRHAVLEALKSGPEIKKLYLTEGrrDPRLKELLKLAKErgikVEEVDRKKLDKLSGTANHQGVVAEVKPYE 74
|
|
| PRK10864 |
PRK10864 |
putative methyltransferase; Provisional |
82-241 |
1.27e-10 |
|
putative methyltransferase; Provisional
Pssm-ID: 236779 [Multi-domain] Cd Length: 346 Bit Score: 60.56 E-value: 1.27e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488388038 82 SGTVTPQGFFAIIKK------PTYDKTQAKQ--VLLIDRIQDPGNLGTLIRTADAAGLDLIVM------EKGTAdpfqdk 147
Cdd:PRK10864 167 SGTEHHGGVCFLIKKrngtdvQQWLAQAGAQdcVLALEDVGNPHNLGGIMRSCAHFGVKGVVVqdaallESGAA------ 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488388038 148 vIRASQGSIFHI-PVIFDDINNYIHQFNGPVYG---TALENAVSFNDVEAQANFALVLGNEGEGVNPDLLKETTQNLTIP 223
Cdd:PRK10864 241 -IRTAEGGAEHVqPITGDSFVDVLDDFRQAGYTivtTSSHKGTPLFKASLPAKMVLVLGQEYDGLSDAARQQGDLSVSID 319
|
170
....*....|....*...
gi 488388038 224 IYGKAESLNVAIAGSILM 241
Cdd:PRK10864 320 GTGNVESLNVSVATGVLL 337
|
|
| SpoU-like |
cd18098 |
SAM-dependent rRNA or tRNA methylase related to SpoU; RNA 2'-O ribose methyltransferase ... |
110-242 |
1.53e-10 |
|
SAM-dependent rRNA or tRNA methylase related to SpoU; RNA 2'-O ribose methyltransferase catalyzes the methyltransfer from S-adenosyl-L-methionine (AdoMet) to the 2'-OH group of ribose in tRNA or rRNA. It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349971 Cd Length: 138 Bit Score: 57.66 E-value: 1.53e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488388038 110 IDRIQDPGNLGTLIRTADAAGLDLIV-------MEKGTADpfqdkviraSQGSIFHIPVI-FDDINNYihqFNGPVYGTA 181
Cdd:cd18098 5 IENPKTPKNVGTLWRAAGCLGASFVFtigarykRRKQSTD---------TSKAWRHIPLFhYDDLEDL---AEPLPFGAV 72
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 488388038 182 L------ENAVSFNDVEAQANFALVLGNEGEGVNPDLLKETTQNLTIPIYGkaeSLNVAIAGSILMY 242
Cdd:cd18098 73 LvaveltEGATPLPDFKHPDRAVYLLGPEDGGLPQEVLARCHHVVYLPTRG---SLNVAVAGSIVLY 136
|
|
| SpoU-like_TrmL |
cd18094 |
SAM-dependent tRNA methylase related to TrmL; tRNA (Um34/Cm34) methyltransferase TrmL ... |
116-243 |
1.88e-09 |
|
SAM-dependent tRNA methylase related to TrmL; tRNA (Um34/Cm34) methyltransferase TrmL catalyzes the methyl transfer from S-adenosyl-L-methionine (AdoMet) to the 2'-OH at position 34 in both tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349967 Cd Length: 145 Bit Score: 54.77 E-value: 1.88e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488388038 116 PGNLGTLIRTADAAGLDLIVMEKgTADPFQDK-VIRASQGSIFHIPV-IFDDINNYIHQF-NGPVYGTALENAVSFNDVE 192
Cdd:cd18094 10 PQNTGNIARTCAATGARLHLIEP-LGFSLDDKrLKRAGLDYWDHVDLtVHDSWEAFLEALpPGRLFLFTTKGTKPYTDFD 88
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 488388038 193 AQANFALVLGNEGEGVNPDLLKETTQN-LTIPIYGKAESLNVAIAGSILMYQ 243
Cdd:cd18094 89 FKPGDYLVFGRESTGLPEEILDAFPDRrLRIPMRPKVRSLNLSNSVAIVLYE 140
|
|
| PRK11081 |
PRK11081 |
tRNA guanosine-2'-O-methyltransferase; Provisional |
100-243 |
7.31e-09 |
|
tRNA guanosine-2'-O-methyltransferase; Provisional
Pssm-ID: 236837 [Multi-domain] Cd Length: 229 Bit Score: 54.23 E-value: 7.31e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488388038 100 DKTQAKQVLLIDRIQDPGNLGTLIRTADAAGldliVMEKGTADPFQDKVIRAS--QGSIFHIPVI-FDDINNYIHQFNG- 175
Cdd:PRK11081 14 ARRQPDLTVCMEQVHKPHNVSAIIRTADAVG----VHEVHAVWPGSRMRTMGStaAGSNSWVQVKtHRTIGDAVAHLKGq 89
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 488388038 176 --PVYGTAL-ENAVSFNDVEAQANFALVLGNEGEGVNPDLLKETTQNLTIPIYGKAESLNVAIAGSILMYQ 243
Cdd:PRK11081 90 gmQILATHLsDTAVDFREIDYTRPTCILMGQEKTGISQEALALADQDIIIPMIGMVQSLNVSVASALILYE 160
|
|
| TrmL |
COG0219 |
tRNA(Leu) C34 or U34 (ribose-2'-O)-methylase TrmL, contains SPOUT domain [Translation, ... |
116-242 |
1.32e-05 |
|
tRNA(Leu) C34 or U34 (ribose-2'-O)-methylase TrmL, contains SPOUT domain [Translation, ribosomal structure and biogenesis]; tRNA(Leu) C34 or U34 (ribose-2'-O)-methylase TrmL, contains SPOUT domain is part of the Pathway/BioSystem: tRNA modification
Pssm-ID: 439989 Cd Length: 153 Bit Score: 43.87 E-value: 1.32e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488388038 116 PGNLGTLIRTADAAG--LDLIvmeKGTADPFQDK-VIRASQGSIFHIPV-IFDDINNYIHQF-NGPVYgtALEN--AVSF 188
Cdd:COG0219 12 PQNTGNIIRLCAATGarLHLI---EPLGFSLDDKkLKRAGLDYWELVDLtVHDSWEAFLEALpGGRLF--LFTTkgTKPY 86
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 488388038 189 NDVEAQANFALVLGNEGEGVNPDLLKET-TQNLTIPIYGKAESLNVAIAGSILMY 242
Cdd:COG0219 87 TDVDYQPGDVLLFGRETAGLPEEVLAAPaDQRLRIPMRPGVRSLNLSNAVAIVLY 141
|
|
| |
