|
Name |
Accession |
Description |
Interval |
E-value |
| DnaA |
TIGR00362 |
chromosomal replication initiator protein DnaA; DnaA is involved in DNA biosynthesis; ... |
7-448 |
0e+00 |
|
chromosomal replication initiator protein DnaA; DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273037 [Multi-domain] Cd Length: 437 Bit Score: 678.10 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488389136 7 WDKVLEIAQERISNTSYQTFIKDTQLYSLKNDEAIILVSLPFNASWLNQRYSEIMQAIIYDVIGYEVKPHFISEDELASY 86
Cdd:TIGR00362 1 WNRILERLEKELSEQEYNTWFKPLKLLSIEGNTLIISVPNEFVKEWIEKNYLDLIEELLQELFGAEIEIEFTVGEDEEEL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488389136 87 NNVNTQEVQEPQVQNSSIDDKTwgkeQFNMHNTFDTFVIGPGNRFPHAASLAVAEAPAEAYNPLFIYGGVGLGKTHLMHA 166
Cdd:TIGR00362 81 EPNSKKPEPAPPEAPAPPSSAS----GLNPKYTFDNFVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHA 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488389136 167 IGHHVLSNKPNAKVIYTSSEKFTNEFIKSIRDNETEAFREKYRKIDVLLIDDIQFIQNKEQTQEEFFHTFNELHQNNKQI 246
Cdd:TIGR00362 157 IGNEILENNPNAKVLYVSSEKFTNDFVNALRNNKMEEFKEKYRSVDLLLIDDIQFLAGKERTQEEFFHTFNALHENNKQI 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488389136 247 VISSDRPPKEIAKLEDRLRSRFEWGLIVDITPPDYETRMAILQKKIEEENLDIPPEALNYIANQIQSNIRELEGALTRLL 326
Cdd:TIGR00362 237 VLTSDRPPKELPGLEDRLRSRFEWGLVVDIEPPDLETRLAILQKKAEEEGLELPDEVLEFIAKNITSNVRELEGALNRLL 316
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488389136 327 AYSKLQGKPITTELTAEALKDIIqSPKSKKITIQDIQKVVGQYYSVRIEDFSAKKRTKSIAYPRQIAMYLSRELTDFSLP 406
Cdd:TIGR00362 317 AYASLTGKPITLELAKEALKDLL-RAQKKEITIENIQKVVAKYYNIKVSDLKSKKRTRNIVRPRQIAMYLAKELTDLSLP 395
|
410 420 430 440
....*....|....*....|....*....|....*....|..
gi 488389136 407 KIGEEFGGRDHTTVIHAHEKIANDIKSDPTFKQEVENLEKEI 448
Cdd:TIGR00362 396 EIGKAFGGRDHTTVLHAVRKIEKLIETDAELKEDIEELKRKL 437
|
|
| dnaA |
PRK00149 |
chromosomal replication initiator protein DnaA; |
2-450 |
0e+00 |
|
chromosomal replication initiator protein DnaA;
Pssm-ID: 234667 [Multi-domain] Cd Length: 401 Bit Score: 677.24 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488389136 2 SEKEIWDKVLEIAQERISNTSYQTFIKDTQLYSLKNDEAIILVSLPFNASWLNQRYSEIMQAIIydvigyevkphfised 81
Cdd:PRK00149 1 NLQSLWEKVLERLKDELSEQEYETWIKPLKALSLEDNTLTLYVPNRFVKDWIEKNYLDLIEEAL---------------- 64
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488389136 82 elasynnvntqevqepqvqnssiddktwgkeQFNMHNTFDTFVIGPGNRFPHAASLAVAEAPAEAYNPLFIYGGVGLGKT 161
Cdd:PRK00149 65 -------------------------------QLNPKYTFDNFVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKT 113
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488389136 162 HLMHAIGHHVLSNKPNAKVIYTSSEKFTNEFIKSIRDNETEAFREKYRKIDVLLIDDIQFIQNKEQTQEEFFHTFNELHQ 241
Cdd:PRK00149 114 HLLHAIGNYILEKNPNAKVVYVTSEKFTNDFVNALRNNTMEEFKEKYRSVDVLLIDDIQFLAGKERTQEEFFHTFNALHE 193
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488389136 242 NNKQIVISSDRPPKEIAKLEDRLRSRFEWGLIVDITPPDYETRMAILQKKIEEENLDIPPEALNYIANQIQSNIRELEGA 321
Cdd:PRK00149 194 AGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKKKAEEEGIDLPDEVLEFIAKNITSNVRELEGA 273
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488389136 322 LTRLLAYSKLQGKPITTELTAEALKDIIqSPKSKKITIQDIQKVVGQYYSVRIEDFSAKKRTKSIAYPRQIAMYLSRELT 401
Cdd:PRK00149 274 LNRLIAYASLTGKPITLELAKEALKDLL-AAQKKKITIENIQKVVAEYYNIKVSDLKSKSRTRNIARPRQIAMYLAKELT 352
|
410 420 430 440
....*....|....*....|....*....|....*....|....*....
gi 488389136 402 DFSLPKIGEEFGGRDHTTVIHAHEKIANDIKSDPTFKQEVENLEKEIRN 450
Cdd:PRK00149 353 DLSLPEIGRAFGGRDHTTVLHAVRKIEKLLEEDPELKEDVEELKRKLKS 401
|
|
| DnaA |
COG0593 |
Chromosomal replication initiation ATPase DnaA [Replication, recombination and repair]; |
119-417 |
0e+00 |
|
Chromosomal replication initiation ATPase DnaA [Replication, recombination and repair];
Pssm-ID: 440358 [Multi-domain] Cd Length: 303 Bit Score: 556.73 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488389136 119 TFDTFVIGPGNRFPHAASLAVAEAPAEAYNPLFIYGGVGLGKTHLMHAIGHHVLSNKPNAKVIYTSSEKFTNEFIKSIRD 198
Cdd:COG0593 6 TFDNFVVGPSNRLAHAAALAVAEWPGKAYNPLFLYGGVGLGKTHLLHAIGNEALENNPGARVVYLTAEEFTNDFINAIRN 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488389136 199 NETEAFREKYRKIDVLLIDDIQFIQNKEQTQEEFFHTFNELHQNNKQIVISSDRPPKEIAKLEDRLRSRFEWGLIVDITP 278
Cdd:COG0593 86 NTIEEFKEKYRSVDVLLIDDIQFLAGKEATQEEFFHTFNALREAGKQIVLTSDRPPKELPGLEERLRSRLEWGLVVDIQP 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488389136 279 PDYETRMAILQKKIEEENLDIPPEALNYIANQIQSNIRELEGALTRLLAYSKLQGKPITTELTAEALKDIIQSpKSKKIT 358
Cdd:COG0593 166 PDLETRIAILRKKAADRGLELPDEVLEYLARRIERNVRELEGALNRLDAYALLTGRPITLELAREVLKDLLRA-QKKEIT 244
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*....
gi 488389136 359 IQDIQKVVGQYYSVRIEDFSAKKRTKSIAYPRQIAMYLSRELTDFSLPKIGEEFGGRDH 417
Cdd:COG0593 245 IEDIQKAVAEYFGVSVADLLSKSRTREIARPRQIAMYLARELTDLSLPEIGRAFGGRDH 303
|
|
| Bac_DnaA |
pfam00308 |
Bacterial dnaA protein; |
115-331 |
3.17e-134 |
|
Bacterial dnaA protein;
Pssm-ID: 278724 [Multi-domain] Cd Length: 219 Bit Score: 385.14 E-value: 3.17e-134
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488389136 115 NMHNTFDTFVIGPGNRFPHAASLAVAEAPAEAYNPLFIYGGVGLGKTHLMHAIGHHVLSNKPNAKVIYTSSEKFTNEFIK 194
Cdd:pfam00308 2 NPRYTFENFVIGPSNRFAHAAALTVAKAPGKAYNPLFIYGGVGLGKTHLLHAIGNYALQNAPNLRVVYLTAEEFLNDFVD 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488389136 195 SIRDNETEAFREKYRKIDVLLIDDIQFIQNKEQTQEEFFHTFNELHQNNKQIVISSDRPPKEIAKLEDRLRSRFEWGLIV 274
Cdd:pfam00308 82 AIRDNKTNQFKEKYRNVDVLLIDDIQFLAGKEGTQEEFFHTFNALHESGKQIVFSSDRPPKELEELEDRLRSRFQWGLVT 161
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 488389136 275 DITPPDYETRMAILQKKIEEENLDIPPEALNYIANQIQSNIRELEGALTRLLAYSKL 331
Cdd:pfam00308 162 DIEPPDLETRLAILRKKAEAEGIEIPPEVLNFIAQRVTDNVRELEGALNRLLAYSSL 218
|
|
| Bac_DnaA_C |
cd06571 |
C-terminal domain of bacterial DnaA proteins. The DNA-binding C-terminal domain of DnaA ... |
359-448 |
1.17e-40 |
|
C-terminal domain of bacterial DnaA proteins. The DNA-binding C-terminal domain of DnaA contains a helix-turn-helix motif that specifically interacts with the DnaA box, a 9-mer motif that occurs repetitively in the replication origin oriC. Multiple copies of DnaA, which is an ATPase, bind to 9-mers at the origin and form an initial complex in which the DNA strands are being separated in an ATP-dependent step.
Pssm-ID: 119330 [Multi-domain] Cd Length: 90 Bit Score: 140.34 E-value: 1.17e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488389136 359 IQDIQKVVGQYYSVRIEDFSAKKRTKSIAYPRQIAMYLSRELTDFSLPKIGEEFGGRDHTTVIHAHEKIANDIKSDPTFK 438
Cdd:cd06571 1 IELIIEAVAEYFGISVEDLRSKSRKKEIALARQIAMYLARELTGLSLPEIGRAFGGRDHSTVLHAVRKIEELLEEDPELK 80
|
90
....*....|
gi 488389136 439 QEVENLEKEI 448
Cdd:cd06571 81 EDVEELEKKL 90
|
|
| Bac_DnaA_C |
smart00760 |
Bacterial dnaA protein helix-turn-helix domain; Could be involved in DNA-binding. |
358-426 |
2.50e-33 |
|
Bacterial dnaA protein helix-turn-helix domain; Could be involved in DNA-binding.
Pssm-ID: 197863 [Multi-domain] Cd Length: 69 Bit Score: 119.92 E-value: 2.50e-33
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 488389136 358 TIQDIQKVVGQYYSVRIEDFSAKKRTKSIAYPRQIAMYLSRELTDFSLPKIGEEFGGRDHTTVIHAHEK 426
Cdd:smart00760 1 TIEEIIEAVAEYFGVKPEDLKSKSRKREIVLARQIAMYLARELTDLSLPEIGKIFGGRDHSTVLHACRK 69
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| DnaA |
TIGR00362 |
chromosomal replication initiator protein DnaA; DnaA is involved in DNA biosynthesis; ... |
7-448 |
0e+00 |
|
chromosomal replication initiator protein DnaA; DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273037 [Multi-domain] Cd Length: 437 Bit Score: 678.10 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488389136 7 WDKVLEIAQERISNTSYQTFIKDTQLYSLKNDEAIILVSLPFNASWLNQRYSEIMQAIIYDVIGYEVKPHFISEDELASY 86
Cdd:TIGR00362 1 WNRILERLEKELSEQEYNTWFKPLKLLSIEGNTLIISVPNEFVKEWIEKNYLDLIEELLQELFGAEIEIEFTVGEDEEEL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488389136 87 NNVNTQEVQEPQVQNSSIDDKTwgkeQFNMHNTFDTFVIGPGNRFPHAASLAVAEAPAEAYNPLFIYGGVGLGKTHLMHA 166
Cdd:TIGR00362 81 EPNSKKPEPAPPEAPAPPSSAS----GLNPKYTFDNFVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHA 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488389136 167 IGHHVLSNKPNAKVIYTSSEKFTNEFIKSIRDNETEAFREKYRKIDVLLIDDIQFIQNKEQTQEEFFHTFNELHQNNKQI 246
Cdd:TIGR00362 157 IGNEILENNPNAKVLYVSSEKFTNDFVNALRNNKMEEFKEKYRSVDLLLIDDIQFLAGKERTQEEFFHTFNALHENNKQI 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488389136 247 VISSDRPPKEIAKLEDRLRSRFEWGLIVDITPPDYETRMAILQKKIEEENLDIPPEALNYIANQIQSNIRELEGALTRLL 326
Cdd:TIGR00362 237 VLTSDRPPKELPGLEDRLRSRFEWGLVVDIEPPDLETRLAILQKKAEEEGLELPDEVLEFIAKNITSNVRELEGALNRLL 316
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488389136 327 AYSKLQGKPITTELTAEALKDIIqSPKSKKITIQDIQKVVGQYYSVRIEDFSAKKRTKSIAYPRQIAMYLSRELTDFSLP 406
Cdd:TIGR00362 317 AYASLTGKPITLELAKEALKDLL-RAQKKEITIENIQKVVAKYYNIKVSDLKSKKRTRNIVRPRQIAMYLAKELTDLSLP 395
|
410 420 430 440
....*....|....*....|....*....|....*....|..
gi 488389136 407 KIGEEFGGRDHTTVIHAHEKIANDIKSDPTFKQEVENLEKEI 448
Cdd:TIGR00362 396 EIGKAFGGRDHTTVLHAVRKIEKLIETDAELKEDIEELKRKL 437
|
|
| dnaA |
PRK00149 |
chromosomal replication initiator protein DnaA; |
2-450 |
0e+00 |
|
chromosomal replication initiator protein DnaA;
Pssm-ID: 234667 [Multi-domain] Cd Length: 401 Bit Score: 677.24 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488389136 2 SEKEIWDKVLEIAQERISNTSYQTFIKDTQLYSLKNDEAIILVSLPFNASWLNQRYSEIMQAIIydvigyevkphfised 81
Cdd:PRK00149 1 NLQSLWEKVLERLKDELSEQEYETWIKPLKALSLEDNTLTLYVPNRFVKDWIEKNYLDLIEEAL---------------- 64
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488389136 82 elasynnvntqevqepqvqnssiddktwgkeQFNMHNTFDTFVIGPGNRFPHAASLAVAEAPAEAYNPLFIYGGVGLGKT 161
Cdd:PRK00149 65 -------------------------------QLNPKYTFDNFVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKT 113
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488389136 162 HLMHAIGHHVLSNKPNAKVIYTSSEKFTNEFIKSIRDNETEAFREKYRKIDVLLIDDIQFIQNKEQTQEEFFHTFNELHQ 241
Cdd:PRK00149 114 HLLHAIGNYILEKNPNAKVVYVTSEKFTNDFVNALRNNTMEEFKEKYRSVDVLLIDDIQFLAGKERTQEEFFHTFNALHE 193
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488389136 242 NNKQIVISSDRPPKEIAKLEDRLRSRFEWGLIVDITPPDYETRMAILQKKIEEENLDIPPEALNYIANQIQSNIRELEGA 321
Cdd:PRK00149 194 AGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKKKAEEEGIDLPDEVLEFIAKNITSNVRELEGA 273
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488389136 322 LTRLLAYSKLQGKPITTELTAEALKDIIqSPKSKKITIQDIQKVVGQYYSVRIEDFSAKKRTKSIAYPRQIAMYLSRELT 401
Cdd:PRK00149 274 LNRLIAYASLTGKPITLELAKEALKDLL-AAQKKKITIENIQKVVAEYYNIKVSDLKSKSRTRNIARPRQIAMYLAKELT 352
|
410 420 430 440
....*....|....*....|....*....|....*....|....*....
gi 488389136 402 DFSLPKIGEEFGGRDHTTVIHAHEKIANDIKSDPTFKQEVENLEKEIRN 450
Cdd:PRK00149 353 DLSLPEIGRAFGGRDHTTVLHAVRKIEKLLEEDPELKEDVEELKRKLKS 401
|
|
| DnaA |
COG0593 |
Chromosomal replication initiation ATPase DnaA [Replication, recombination and repair]; |
119-417 |
0e+00 |
|
Chromosomal replication initiation ATPase DnaA [Replication, recombination and repair];
Pssm-ID: 440358 [Multi-domain] Cd Length: 303 Bit Score: 556.73 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488389136 119 TFDTFVIGPGNRFPHAASLAVAEAPAEAYNPLFIYGGVGLGKTHLMHAIGHHVLSNKPNAKVIYTSSEKFTNEFIKSIRD 198
Cdd:COG0593 6 TFDNFVVGPSNRLAHAAALAVAEWPGKAYNPLFLYGGVGLGKTHLLHAIGNEALENNPGARVVYLTAEEFTNDFINAIRN 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488389136 199 NETEAFREKYRKIDVLLIDDIQFIQNKEQTQEEFFHTFNELHQNNKQIVISSDRPPKEIAKLEDRLRSRFEWGLIVDITP 278
Cdd:COG0593 86 NTIEEFKEKYRSVDVLLIDDIQFLAGKEATQEEFFHTFNALREAGKQIVLTSDRPPKELPGLEERLRSRLEWGLVVDIQP 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488389136 279 PDYETRMAILQKKIEEENLDIPPEALNYIANQIQSNIRELEGALTRLLAYSKLQGKPITTELTAEALKDIIQSpKSKKIT 358
Cdd:COG0593 166 PDLETRIAILRKKAADRGLELPDEVLEYLARRIERNVRELEGALNRLDAYALLTGRPITLELAREVLKDLLRA-QKKEIT 244
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*....
gi 488389136 359 IQDIQKVVGQYYSVRIEDFSAKKRTKSIAYPRQIAMYLSRELTDFSLPKIGEEFGGRDH 417
Cdd:COG0593 245 IEDIQKAVAEYFGVSVADLLSKSRTREIARPRQIAMYLARELTDLSLPEIGRAFGGRDH 303
|
|
| dnaA |
PRK14086 |
chromosomal replication initiator protein DnaA; |
113-451 |
2.04e-165 |
|
chromosomal replication initiator protein DnaA;
Pssm-ID: 237605 [Multi-domain] Cd Length: 617 Bit Score: 479.71 E-value: 2.04e-165
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488389136 113 QFNMHNTFDTFVIGPGNRFPHAASLAVAEAPAEAYNPLFIYGGVGLGKTHLMHAIGHHVLSNKPNAKVIYTSSEKFTNEF 192
Cdd:PRK14086 280 RLNPKYTFDTFVIGASNRFAHAAAVAVAEAPAKAYNPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEF 359
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488389136 193 IKSIRDNETEAFREKYRKIDVLLIDDIQFIQNKEQTQEEFFHTFNELHQNNKQIVISSDRPPKEIAKLEDRLRSRFEWGL 272
Cdd:PRK14086 360 INSIRDGKGDSFRRRYREMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGL 439
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488389136 273 IVDITPPDYETRMAILQKKIEEENLDIPPEALNYIANQIQSNIRELEGALTRLLAYSKLQGKPITTELTAEALKDIIQSP 352
Cdd:PRK14086 440 ITDVQPPELETRIAILRKKAVQEQLNAPPEVLEFIASRISRNIRELEGALIRVTAFASLNRQPVDLGLTEIVLRDLIPED 519
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488389136 353 KSKKITIQDIQKVVGQYYSVRIEDFSAKKRTKSIAYPRQIAMYLSRELTDFSLPKIGEEFgGRDHTTVIHAHEKIANDIK 432
Cdd:PRK14086 520 SAPEITAAAIMAATADYFGLTVEDLCGTSRSRVLVTARQIAMYLCRELTDLSLPKIGQQF-GRDHTTVMHADRKIRALMA 598
|
330
....*....|....*....
gi 488389136 433 SDPTFKQEVENLEKEIRNQ 451
Cdd:PRK14086 599 ERRSIYNQVTELTNRIKNG 617
|
|
| Bac_DnaA |
pfam00308 |
Bacterial dnaA protein; |
115-331 |
3.17e-134 |
|
Bacterial dnaA protein;
Pssm-ID: 278724 [Multi-domain] Cd Length: 219 Bit Score: 385.14 E-value: 3.17e-134
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488389136 115 NMHNTFDTFVIGPGNRFPHAASLAVAEAPAEAYNPLFIYGGVGLGKTHLMHAIGHHVLSNKPNAKVIYTSSEKFTNEFIK 194
Cdd:pfam00308 2 NPRYTFENFVIGPSNRFAHAAALTVAKAPGKAYNPLFIYGGVGLGKTHLLHAIGNYALQNAPNLRVVYLTAEEFLNDFVD 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488389136 195 SIRDNETEAFREKYRKIDVLLIDDIQFIQNKEQTQEEFFHTFNELHQNNKQIVISSDRPPKEIAKLEDRLRSRFEWGLIV 274
Cdd:pfam00308 82 AIRDNKTNQFKEKYRNVDVLLIDDIQFLAGKEGTQEEFFHTFNALHESGKQIVFSSDRPPKELEELEDRLRSRFQWGLVT 161
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 488389136 275 DITPPDYETRMAILQKKIEEENLDIPPEALNYIANQIQSNIRELEGALTRLLAYSKL 331
Cdd:pfam00308 162 DIEPPDLETRLAILRKKAEAEGIEIPPEVLNFIAQRVTDNVRELEGALNRLLAYSSL 218
|
|
| PRK12422 |
PRK12422 |
chromosomal replication initiator protein DnaA; |
95-434 |
4.98e-79 |
|
chromosomal replication initiator protein DnaA;
Pssm-ID: 183521 [Multi-domain] Cd Length: 445 Bit Score: 252.06 E-value: 4.98e-79
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488389136 95 QEPQVQNSSIDDKTWGKEQFNMHNTFDTFVIGPGNRFPHAASLAVAEAPAEA----YNPLFIYGGVGLGKTHLMHAIGHH 170
Cdd:PRK12422 85 KEKQIQQEKTAYFTMKYGELDPLMTFANFLVTPENDLPHRILQEFTKVSEQGkgfpFNPIYLFGPEGSGKTHLMQAAVHA 164
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488389136 171 VlsNKPNAKVIYTSSEKFTNEFIKSIRDNETEAFREKYRKIDVLLIDDIQFIQNKEQTQEEFFHTFNELHQNNKQIVISS 250
Cdd:PRK12422 165 L--RESGGKILYVRSELFTEHLVSAIRSGEMQRFRQFYRNVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISS 242
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488389136 251 DRPPKEIAKLEDRLRSRFEWGLIVDITPPDYETRMAILQKKIEEENLDIPPEALNYIANQIQSNIRELEGALTRL---LA 327
Cdd:PRK12422 243 TCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERKAEALSIRIEETALDFLIEALSSNVKSLLHALTLLakrVA 322
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488389136 328 YSKLQGKPITTELTAEALKDIIQSPKSKKITIQDIQKVVGQYYSVRIEDFSAKKRTKSIAYPRQIAMYLSRELTDFSLPK 407
Cdd:PRK12422 323 YKKLSHQLLYVDDIKALLHDVLEAAESVRLTPSKIIRAVAQYYGVSPESILGRSQSREYVLPRQVAMYLCRQKLSLSYVK 402
|
330 340
....*....|....*....|....*..
gi 488389136 408 IGEEFgGRDHTTVIHAHEKIANDIKSD 434
Cdd:PRK12422 403 IGDVF-SRDHSTVISSIRAISQKLEED 428
|
|
| Bac_DnaA_C |
cd06571 |
C-terminal domain of bacterial DnaA proteins. The DNA-binding C-terminal domain of DnaA ... |
359-448 |
1.17e-40 |
|
C-terminal domain of bacterial DnaA proteins. The DNA-binding C-terminal domain of DnaA contains a helix-turn-helix motif that specifically interacts with the DnaA box, a 9-mer motif that occurs repetitively in the replication origin oriC. Multiple copies of DnaA, which is an ATPase, bind to 9-mers at the origin and form an initial complex in which the DNA strands are being separated in an ATP-dependent step.
Pssm-ID: 119330 [Multi-domain] Cd Length: 90 Bit Score: 140.34 E-value: 1.17e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488389136 359 IQDIQKVVGQYYSVRIEDFSAKKRTKSIAYPRQIAMYLSRELTDFSLPKIGEEFGGRDHTTVIHAHEKIANDIKSDPTFK 438
Cdd:cd06571 1 IELIIEAVAEYFGISVEDLRSKSRKKEIALARQIAMYLARELTGLSLPEIGRAFGGRDHSTVLHAVRKIEELLEEDPELK 80
|
90
....*....|
gi 488389136 439 QEVENLEKEI 448
Cdd:cd06571 81 EDVEELEKKL 90
|
|
| Bac_DnaA_C |
pfam08299 |
Bacterial dnaA protein helix-turn-helix; |
359-427 |
2.07e-35 |
|
Bacterial dnaA protein helix-turn-helix;
Pssm-ID: 462419 [Multi-domain] Cd Length: 69 Bit Score: 125.59 E-value: 2.07e-35
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 488389136 359 IQDIQKVVGQYYSVRIEDFSAKKRTKSIAYPRQIAMYLSRELTDFSLPKIGEEFGGRDHTTVIHAHEKI 427
Cdd:pfam08299 1 IEKIIEAVAEYFGISPEDLKSKSRKREIALARQIAMYLARELTDLSLPEIGRAFGGRDHSTVIHACKKI 69
|
|
| Bac_DnaA_C |
smart00760 |
Bacterial dnaA protein helix-turn-helix domain; Could be involved in DNA-binding. |
358-426 |
2.50e-33 |
|
Bacterial dnaA protein helix-turn-helix domain; Could be involved in DNA-binding.
Pssm-ID: 197863 [Multi-domain] Cd Length: 69 Bit Score: 119.92 E-value: 2.50e-33
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 488389136 358 TIQDIQKVVGQYYSVRIEDFSAKKRTKSIAYPRQIAMYLSRELTDFSLPKIGEEFGGRDHTTVIHAHEK 426
Cdd:smart00760 1 TIEEIIEAVAEYFGVKPEDLKSKSRKREIVLARQIAMYLARELTDLSLPEIGKIFGGRDHSTVLHACRK 69
|
|
| DnaA_homol_Hda |
TIGR03420 |
DnaA regulatory inactivator Hda; Members of this protein family are Hda (Homologous to DnaA). ... |
119-346 |
1.11e-32 |
|
DnaA regulatory inactivator Hda; Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP. [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 274571 [Multi-domain] Cd Length: 226 Bit Score: 123.45 E-value: 1.11e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488389136 119 TFDTFvIGPGNRFPHAASLAVAEAPAEayNPLFIYGGVGLGKTHLMHAIGHHVLSNKPNAkvIYTSsekftnefIKSIRD 198
Cdd:TIGR03420 13 TFDNF-YAGGNAELLAALRQLAAGKGD--RFLYLWGESGSGKSHLLQAACAAAEERGKSA--IYLP--------LAELAQ 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488389136 199 NETEAFrEKYRKIDVLLIDDIQFIQNKEQTQEEFFHTFNELHQNNKQIVISSDRPPKEIA-KLEDrLRSRFEWGLIVDIT 277
Cdd:TIGR03420 80 ADPEVL-EGLEQADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPlRLPD-LRTRLAWGLVFQLP 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 488389136 278 PPDYETRMAILQKKIEEENLDIPPEALNYIANQIQSNIRELEGALTRLLAYSKLQGKPITTELTAEALK 346
Cdd:TIGR03420 158 PLSDEEKIAALQSRAARRGLQLPDEVADYLLRHGSRDMGSLMALLDALDRASLAAKRKITIPFVKEVLA 226
|
|
| PRK08903 |
PRK08903 |
DnaA regulatory inactivator Hda; Validated |
119-353 |
1.50e-20 |
|
DnaA regulatory inactivator Hda; Validated
Pssm-ID: 236347 [Multi-domain] Cd Length: 227 Bit Score: 90.04 E-value: 1.50e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488389136 119 TFDTFVIGPGNRFPHAASLAVAEAPAEAYnpLFIYGGVGLGKTHLMHAIGHHVLSNKPNAkvIYtssekftnefiksIRD 198
Cdd:PRK08903 16 TFDNFVAGENAELVARLRELAAGPVADRF--FYLWGEAGSGRSHLLQALVADASYGGRNA--RY-------------LDA 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488389136 199 NETEAFREKYRKIDVLLIDDIQFIQNKEQTQeeFFHTFNELHQNNK-QIVISSDRPPKEIAKLEDrLRSRFEWGLIVDIT 277
Cdd:PRK08903 79 ASPLLAFDFDPEAELYAVDDVERLDDAQQIA--LFNLFNRVRAHGQgALLVAGPAAPLALPLRED-LRTRLGWGLVYELK 155
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 488389136 278 PPDYETRMAILQKKIEEENLDIPPEALNYIANQIQSNIRELEGALTRLLAYSKLQGKPITTELtaeaLKDIIQSPK 353
Cdd:PRK08903 156 PLSDADKIAALKAAAAERGLQLADEVPDYLLTHFRRDMPSLMALLDALDRYSLEQKRPVTLPL----LREMLAQPE 227
|
|
| AAA |
cd00009 |
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ... |
142-272 |
4.76e-19 |
|
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Pssm-ID: 99707 [Multi-domain] Cd Length: 151 Bit Score: 83.73 E-value: 4.76e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488389136 142 APAEAYNPLFIYGGVGLGKTHLMHAIGHHvlSNKPNAKVIYTSSEKFTNEFIKSIRDNET----EAFREKYRKIDVLLID 217
Cdd:cd00009 14 LELPPPKNLLLYGPPGTGKTTLARAIANE--LFRPGAPFLYLNASDLLEGLVVAELFGHFlvrlLFELAEKAKPGVLFID 91
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 488389136 218 DIQFIQNKEQ-TQEEFFHTFNEL---HQNNKQIVISSDRPP-KEIAKLEDRLRSRFEWGL 272
Cdd:cd00009 92 EIDSLSRGAQnALLRVLETLNDLridRENVRVIGATNRPLLgDLDRALYDRLDIRIVIPL 151
|
|
| PRK08084 |
PRK08084 |
DnaA inactivator Hda; |
119-325 |
3.86e-15 |
|
DnaA inactivator Hda;
Pssm-ID: 181224 [Multi-domain] Cd Length: 235 Bit Score: 74.71 E-value: 3.86e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488389136 119 TFDTFVIGpGNRFPHAASLAVAEAPAEAYnpLFIYGGVGLGKTHLMHAIGHHVlsNKPNAKVIYTSSEKftnefiksiRD 198
Cdd:PRK08084 20 TFASFYPG-DNDSLLAALQNALRQEHSGY--IYLWSREGAGRSHLLHAACAEL--SQRGRAVGYVPLDK---------RA 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488389136 199 NETEAFREKYRKIDVLLIDDIQFIQNKEQTQEEFFHTFNE-LHQNNKQIVISSDRPPKEIA-KLEDrLRSRFEWGLIVDI 276
Cdd:PRK08084 86 WFVPEVLEGMEQLSLVCIDNIECIAGDELWEMAIFDLYNRiLESGRTRLLITGDRPPRQLNlGLPD-LASRLDWGQIYKL 164
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 488389136 277 TPPDYETRMAILQKKIEEENLDIPPEALNYIANQIQSNIRELEGALTRL 325
Cdd:PRK08084 165 QPLSDEEKLQALQLRARLRGFELPEDVGRFLLKRLDREMRTLFMTLDQL 213
|
|
| DnaC |
COG1484 |
DNA replication protein DnaC [Replication, recombination and repair]; |
114-256 |
6.91e-14 |
|
DNA replication protein DnaC [Replication, recombination and repair];
Pssm-ID: 441093 [Multi-domain] Cd Length: 242 Bit Score: 70.97 E-value: 6.91e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488389136 114 FNMHNTFDTFVIG--PGNRFPHAASLAVAEAPAEAYNpLFIYGGVGLGKTHLMHAIGHHVLSNkpNAKVIYTSSEKFTNE 191
Cdd:COG1484 65 FPAAKTLEDFDFDaqPGLDRRQILELATLDFIERGEN-LILLGPPGTGKTHLAIALGHEACRA--GYRVRFTTAPDLVNE 141
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 488389136 192 FIKSIRDNETEAFREKYRKIDVLLIDDIQFIQNKEQTQEEFFHTFNELHQnNKQIVISSDRPPKE 256
Cdd:COG1484 142 LKEARADGRLERLLKRLAKVDLLILDELGYLPLDAEGAELLFELISDRYE-RRSTIITSNLPFSE 205
|
|
| PRK06835 |
PRK06835 |
DNA replication protein DnaC; Validated |
150-267 |
1.59e-11 |
|
DNA replication protein DnaC; Validated
Pssm-ID: 235871 [Multi-domain] Cd Length: 329 Bit Score: 65.31 E-value: 1.59e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488389136 150 LFIYGGVGLGKTHLMHAIGHHVLSNKpnAKVIYTSSEKFTNEfIKSIRDNETEAFREKYRKI---DVLLIDDIQFIQNKE 226
Cdd:PRK06835 186 LLFYGNTGTGKTFLSNCIAKELLDRG--KSVIYRTADELIEI-LREIRFNNDKELEEVYDLLincDLLIIDDLGTEKITE 262
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 488389136 227 QTQEEFFHTFNELHQNNKQIVISSDRPPKEIAKL-EDRLRSR 267
Cdd:PRK06835 263 FSKSELFNLINKRLLRQKKMIISTNLSLEELLKTySERISSR 304
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
148-273 |
2.54e-10 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 58.54 E-value: 2.54e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488389136 148 NPLFIYGGVGLGKTHLMHAIGHhvLSNKPNAKVIYTSSEKFTNEFIKSIRDNETEAFRE---------------KYRKID 212
Cdd:smart00382 3 EVILIVGPPGSGKTTLARALAR--ELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKAsgsgelrlrlalalaRKLKPD 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 488389136 213 VLLIDDIQFIQNKEQTQEEFFH-----TFNELHQNNKQIVISSDRPPKEIAK-LEDRLRSRFEWGLI 273
Cdd:smart00382 81 VLILDEITSLLDAEQEALLLLLeelrlLLLLKSEKNLTVILTTNDEKDLGPAlLRRRFDRRIVLLLI 147
|
|
| HolA |
COG1466 |
DNA polymerase III, delta subunit [Replication, recombination and repair]; |
213-367 |
3.59e-08 |
|
DNA polymerase III, delta subunit [Replication, recombination and repair];
Pssm-ID: 441075 [Multi-domain] Cd Length: 305 Bit Score: 54.87 E-value: 3.59e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488389136 213 VLLIDDIQFIQNKEQTQEEFFHTFNELHQNNkQIVISSDRPPKEiAKLEDRLRSRfewGLIVDITPPDYETRMAILQKKI 292
Cdd:COG1466 65 LVIVRNAEFLKKPGEGLEALEAYLANPPPDT-VLVLTAGKLDKR-KKLFKALEKA---GVVVECYPLKERELPAWIRQRL 139
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 488389136 293 EEENLDIPPEALNYIANQIQSNIRELEGALTRLLAYsklqgkpitteltaealkdiiqSPKSKKITIQDIQKVVG 367
Cdd:COG1466 140 KAAGLRIDPDAAQLLAERVGGDLLALAQELEKLALY----------------------AGDGGTITLEDVEALVG 192
|
|
| PRK06030 |
PRK06030 |
hypothetical protein; Provisional |
378-449 |
1.04e-07 |
|
hypothetical protein; Provisional
Pssm-ID: 180356 Cd Length: 124 Bit Score: 50.55 E-value: 1.04e-07
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 488389136 378 SAKKRTKSIAYPRQIAMYLSRelTDFSLPKIGEEFG-GRDHTTVIHAHEKIaNDIKSDPTFKQEVENLEKEIR 449
Cdd:PRK06030 45 SPLRGRREVSRIRQIAMYVAH--VSLGWPMNEVALAfGRDRTTVGHACHTV-EDLRDDAAFDARVSVLERIVN 114
|
|
| PRK08116 |
PRK08116 |
hypothetical protein; Validated |
119-293 |
7.10e-07 |
|
hypothetical protein; Validated
Pssm-ID: 236153 [Multi-domain] Cd Length: 268 Bit Score: 50.40 E-value: 7.10e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488389136 119 TFDTFVIGPGNRFPHAASLAVAEAPAEAYN---PLFIYGGVGLGKTHLMHAIGHHVLSNKpnAKVIYTSSEKFTNEfIKS 195
Cdd:PRK08116 83 TFENFLFDKGSEKAYKIARKYVKKFEEMKKenvGLLLWGSVGTGKTYLAACIANELIEKG--VPVIFVNFPQLLNR-IKS 159
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488389136 196 IRDNETEAFREKY----RKIDVLLIDDIQFIQNKEQTQEEFFHTFNELHQNNKQIVISSDRPPKEIA-KLEDRLRSR-FE 269
Cdd:PRK08116 160 TYKSSGKEDENEIirslVNADLLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLSLEELKnQYGKRIYDRiLE 239
|
170 180
....*....|....*....|....
gi 488389136 270 WGLIVDITPPDYetRMAILQKKIE 293
Cdd:PRK08116 240 MCTPVENEGKSY--RKEIAKEKLQ 261
|
|
| PRK12402 |
PRK12402 |
replication factor C small subunit 2; Reviewed |
150-348 |
1.55e-06 |
|
replication factor C small subunit 2; Reviewed
Pssm-ID: 237090 [Multi-domain] Cd Length: 337 Bit Score: 49.99 E-value: 1.55e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488389136 150 LFIYGGVGLGKTHLMHAIGHHVLSNKPNAKVIYTSSEKFTNEFIKSI-RDNETEAFREKYRKIDVLLIDDIQ-------- 220
Cdd:PRK12402 39 LLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADFFDQGKKYLvEDPRFAHFLGTDKRIRSSKIDNFKhvlkeyas 118
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488389136 221 -----------FIQNKEQTQEEFFHTFN---ELHQNNKQIVISSDRPPKEIAKLedrlRSRfewGLIVDITPPDYETRMA 286
Cdd:PRK12402 119 yrplsadyktiLLDNAEALREDAQQALRrimEQYSRTCRFIIATRQPSKLIPPI----RSR---CLPLFFRAPTDDELVD 191
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 488389136 287 ILQKKIEEENLDIPPEALNYIANQIQSNIRelEGALTRLLAYskLQGKPITTELTAEALKDI 348
Cdd:PRK12402 192 VLESIAEAEGVDYDDDGLELIAYYAGGDLR--KAILTLQTAA--LAAGEITMEAAYEALGDV 249
|
|
| PRK06921 |
PRK06921 |
hypothetical protein; Provisional |
148-267 |
3.90e-06 |
|
hypothetical protein; Provisional
Pssm-ID: 180750 [Multi-domain] Cd Length: 266 Bit Score: 48.24 E-value: 3.90e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488389136 148 NPLFIYGGVGLGKTHLMHAIGHHVLSNKPNAKVIYTSSEKFTNefIKSIRDNeTEAFREKYRKIDVLLIDDI-QFIQNKE 226
Cdd:PRK06921 118 NSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGD--LKDDFDL-LEAKLNRMKKVEVLFIDDLfKPVNGKP 194
|
90 100 110 120
....*....|....*....|....*....|....*....|....*
gi 488389136 227 QTQ----EEFFHTFNELHQNNKQIVISSDRPPKEIAKLEDRLRSR 267
Cdd:PRK06921 195 RATewqiEQMYSVLNYRYLNHKPILISSELTIDELLDIDEALGSR 239
|
|
| PRK09087 |
PRK09087 |
hypothetical protein; Validated |
214-351 |
1.31e-05 |
|
hypothetical protein; Validated
Pssm-ID: 169652 [Multi-domain] Cd Length: 226 Bit Score: 46.21 E-value: 1.31e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488389136 214 LLIDDIQFIQNKEQtqeEFFHTFNELHQNNKQIVISSDRPPKEI-AKLEDrLRSRFEWGLIVDITPPDYETRMAILQKKI 292
Cdd:PRK09087 91 VLIEDIDAGGFDET---GLFHLINSVRQAGTSLLMTSRLWPSSWnVKLPD-LKSRLKAATVVEIGEPDDALLSQVIFKLF 166
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 488389136 293 EEENLDIPPEALNYIANQIQsniRELEGALT---RL--LAYSklQGKPITTELTAEALKDIIQS 351
Cdd:PRK09087 167 ADRQLYVDPHVVYYLVSRME---RSLFAAQTivdRLdrLALE--RKSRITRALAAEVLNEMGQA 225
|
|
| IstB_IS21 |
pfam01695 |
IstB-like ATP binding protein; This protein contains an ATP/GTP binding P-loop motif. It is ... |
113-253 |
3.60e-04 |
|
IstB-like ATP binding protein; This protein contains an ATP/GTP binding P-loop motif. It is found associated with IS21 family insertion sequences. The function of this protein is unknown, but it may perform a transposase function.
Pssm-ID: 426385 [Multi-domain] Cd Length: 238 Bit Score: 42.05 E-value: 3.60e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488389136 113 QFNMHNTFDT--FVIGPGNRFPHAASLAVAEAPAEAYNPLFIyGGVGLGKTHLMHAIGhhVLSNKPNAKVIYTSSEKFTN 190
Cdd:pfam01695 57 KLPPHKTLEDfdFTFAPGLDQRIVAELASLSFIDRAQNVVLL-GPPGVGKTHLAIALG--VEACRAGYSVRFTSAADLVN 133
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 488389136 191 EFIKSIRDNETEAFREKYRKIDVLLIDDIQFIQNKEQTQEEFFHTFNELHQnNKQIVISSDRP 253
Cdd:pfam01695 134 QLKRAHGDGKLTRKLQQLLKPDVLILDEWGYLPLDQAEANLLFQVISKRYE-HRSIILTSNLP 195
|
|
| PRK06620 |
PRK06620 |
hypothetical protein; Validated |
192-346 |
4.04e-04 |
|
hypothetical protein; Validated
Pssm-ID: 168630 Cd Length: 214 Bit Score: 41.75 E-value: 4.04e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488389136 192 FIKSIRDNEteafrEKYRKIDVLLIDDIQFIQNKEqtqeeFFHTFNELHQNNKQIVISSDRPPKEIAkLEDrLRSRFEWG 271
Cdd:PRK06620 72 IIKDIFFNE-----EILEKYNAFIIEDIENWQEPA-----LLHIFNIINEKQKYLLLTSSDKSRNFT-LPD-LSSRIKSV 139
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 488389136 272 LIVDITPPDYETRMAILQKKIEEENLDIPPEALNYIANQIQSNIRELEGALTRLLAYSKLQGKPITTELTAEALK 346
Cdd:PRK06620 140 LSILLNSPDDELIKILIFKHFSISSVTISRQIIDFLLVNLPREYSKIIEILENINYFALISKRKITISLVKEVLN 214
|
|
| PRK08181 |
PRK08181 |
transposase; Validated |
150-253 |
4.71e-04 |
|
transposase; Validated
Pssm-ID: 136670 [Multi-domain] Cd Length: 269 Bit Score: 41.84 E-value: 4.71e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488389136 150 LFIYGGVGLGKTHLMHAIGHHVLSNkpNAKVIYTSSEKFTNEFIKSIRDNETEAFREKYRKIDVLLIDDIQFIqNKEQTQ 229
Cdd:PRK08181 109 LLLFGPPGGGKSHLAAAIGLALIEN--GWRVLFTRTTDLVQKLQVARRELQLESAIAKLDKFDLLILDDLAYV-TKDQAE 185
|
90 100
....*....|....*....|....
gi 488389136 230 EEFFHTFNELHQNNKQIVISSDRP 253
Cdd:PRK08181 186 TSVLFELISARYERRSILITANQP 209
|
|
| PRK06672 |
PRK06672 |
hypothetical protein; Validated |
4-90 |
8.18e-04 |
|
hypothetical protein; Validated
Pssm-ID: 180654 [Multi-domain] Cd Length: 341 Bit Score: 41.29 E-value: 8.18e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488389136 4 KEIWDKVLEIAQERISNTSYQTFIKDTQLySLKNDEAIILVSLPFNASWLNQRYSEIMQAIIYDVIGYEVKPHFisedEL 83
Cdd:PRK06672 192 KTIWNKIKDKMQLKISRPSYETWVKETTA-RINEDSLIIYFENEFQQEWVKKSYKDLISQIAKELTGNTYEIQF----EL 266
|
....*..
gi 488389136 84 ASYNNVN 90
Cdd:PRK06672 267 KSNTTSN 273
|
|
| PRK08939 |
PRK08939 |
primosomal protein DnaI; Reviewed |
144-219 |
4.53e-03 |
|
primosomal protein DnaI; Reviewed
Pssm-ID: 236353 [Multi-domain] Cd Length: 306 Bit Score: 39.08 E-value: 4.53e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488389136 144 AEAYNP------LFIYGGVGLGKTHLMHAIGHHVLSNKPNAKVIYTSSekFTNEFIKSIRDNETEAFREKYRKIDVLLID 217
Cdd:PRK08939 147 LEAYPPgekvkgLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPE--FIRELKNSISDGSVKEKIDAVKEAPVLMLD 224
|
..
gi 488389136 218 DI 219
Cdd:PRK08939 225 DI 226
|
|
| SpoVK |
COG0464 |
AAA+-type ATPase, SpoVK/Ycf46/Vps4 family [Cell wall/membrane/envelope biogenesis, Cell cycle ... |
150-348 |
5.66e-03 |
|
AAA+-type ATPase, SpoVK/Ycf46/Vps4 family [Cell wall/membrane/envelope biogenesis, Cell cycle control, cell division, chromosome partitioning, Signal transduction mechanisms];
Pssm-ID: 440232 [Multi-domain] Cd Length: 397 Bit Score: 38.74 E-value: 5.66e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488389136 150 LFiYGGVGLGKTHLMHAIGHHVlsnkpNAKVIYTSSEKFTNEFI----KSIRdnetEAFREKYRKID-VLLIDDIQFI-- 222
Cdd:COG0464 195 LL-YGPPGTGKTLLARALAGEL-----GLPLIEVDLSDLVSKYVgeteKNLR----EVFDKARGLAPcVLFIDEADALag 264
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488389136 223 ---QNKEQTQEEFFHTF-NELHQNNKQIVIssdrppkeIA------KLEDRLRSRFEwgLIVDITPPDYETRMAILQKKI 292
Cdd:COG0464 265 krgEVGDGVGRRVVNTLlTEMEELRSDVVV--------IAatnrpdLLDPALLRRFD--EIIFFPLPDAEERLEIFRIHL 334
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 488389136 293 EEENLDiPPEALNYIANQ-IQSNIRELEGAL--TRLLAYsKLQGKPITTELTAEALKDI 348
Cdd:COG0464 335 RKRPLD-EDVDLEELAEAtEGLSGADIRNVVrrAALQAL-RLGREPVTTEDLLEALERE 391
|
|
| CDC6 |
COG1474 |
Cdc6-related protein, AAA superfamily ATPase [Replication, recombination and repair]; |
150-308 |
8.19e-03 |
|
Cdc6-related protein, AAA superfamily ATPase [Replication, recombination and repair];
Pssm-ID: 441083 [Multi-domain] Cd Length: 389 Bit Score: 38.29 E-value: 8.19e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488389136 150 LFIYGGVGLGKT----HLMHAIGHHVLSNKPNAKVIY------TSSEKFTNEFIKSIRDNETE-----AFREKYRKI--- 211
Cdd:COG1474 54 VLIYGPTGTGKTavakYVLEELEEEAEERGVDVRVVYvncrqaSTRYRVLSRILEELGSGEDIpstglSTDELFDRLyea 133
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488389136 212 -----DVLLI--DDIQFIQNKEqtQEEFFHTFNELHQNNKQ-----IVISSDrpPKEIAKLEDRLRSRFewgLIVDITPP 279
Cdd:COG1474 134 lderdGVLVVvlDEIDYLVDDE--GDDLLYQLLRANEELEGarvgvIGISND--LEFLENLDPRVKSSL---GEEEIVFP 206
|
170 180 190
....*....|....*....|....*....|....*
gi 488389136 280 DY---ETRmAILQKKIEE---ENLdIPPEALNYIA 308
Cdd:COG1474 207 PYdadELR-DILEDRAELafyDGV-LSDEVIPLIA 239
|
|
| |
