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Conserved domains on  [gi|488392106|ref|WP_002461491|]
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MULTISPECIES: cyclic-di-AMP receptor [Staphylococcus]

Protein Classification

cyclic-di-AMP receptor( domain architecture ID 10533043)

cyclic-di-AMP (c-di-AMP) receptor is involved in c-di-AMP-mediated signaling pathways; c-di-AMP is an essential bacterial second messenger

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CdAMP_rec pfam06153
Cyclic-di-AMP receptor; CdAMP is a family of bacterial cyclic-di-AMP receptor proteins. ...
 1-109 4.86e-68

Cyclic-di-AMP receptor; CdAMP is a family of bacterial cyclic-di-AMP receptor proteins. Cyclic-di-AMP (c-di-AMP) is a bacterial secondary messenger involved in various processes, including sensing of DNA-integrity, cell wall metabolism and potassium transport. CdAMP_rec has a ferredoxin-like fold and is structurally related to Pii-signal transduction proteins.


:

Pssm-ID: 283747  Cd Length: 109  Bit Score: 199.50  E-value: 4.86e-68
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488392106    1 MKMIIAIIQDQDSQELSDQLVKHDFRATKLATTGGFLRAGNTTFLCGVDDDRVDDILTVIDNTCGNREQLVSPMTPMGGS 80
Cdd:pfam06153   1 MKLVIAIVQDQDSNRLSDALTEQNFRATKLATTGGFLKAGNTTLMIGVEDERVDDVLSIIKDNCKTRDQLVTPISPMGGS 80

                          90       100
                  ....*....|....*....|....*....
gi 488392106   81 ADSYIPYPVEVEVGGATVFVMPIDAFHRF 109
Cdd:pfam06153  81 ADSYVPYPVEVEVGGATVFVLPVEKFHKF 109
 
Name Accession Description Interval E-value
CdAMP_rec pfam06153
Cyclic-di-AMP receptor; CdAMP is a family of bacterial cyclic-di-AMP receptor proteins. ...
 1-109 4.86e-68

Cyclic-di-AMP receptor; CdAMP is a family of bacterial cyclic-di-AMP receptor proteins. Cyclic-di-AMP (c-di-AMP) is a bacterial secondary messenger involved in various processes, including sensing of DNA-integrity, cell wall metabolism and potassium transport. CdAMP_rec has a ferredoxin-like fold and is structurally related to Pii-signal transduction proteins.


Pssm-ID: 283747  Cd Length: 109  Bit Score: 199.50  E-value: 4.86e-68
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488392106    1 MKMIIAIIQDQDSQELSDQLVKHDFRATKLATTGGFLRAGNTTFLCGVDDDRVDDILTVIDNTCGNREQLVSPMTPMGGS 80
Cdd:pfam06153   1 MKLVIAIVQDQDSNRLSDALTEQNFRATKLATTGGFLKAGNTTLMIGVEDERVDDVLSIIKDNCKTRDQLVTPISPMGGS 80

                          90       100
                  ....*....|....*....|....*....
gi 488392106   81 ADSYIPYPVEVEVGGATVFVMPIDAFHRF 109
Cdd:pfam06153  81 ADSYVPYPVEVEVGGATVFVLPVEKFHKF 109
DarA COG3870
Cyclic di-AMP receptor DarA/PstA [Signal transduction mechanisms];
1-109 4.96e-67

Cyclic di-AMP receptor DarA/PstA [Signal transduction mechanisms];


Pssm-ID: 443079  Cd Length: 109  Bit Score: 196.92  E-value: 4.96e-67
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488392106   1 MKMIIAIIQDQDSQELSDQLVKHDFRATKLATTGGFLRAGNTTFLCGVDDDRVDDILTVIDNTCGNREQLVSPMTPMGGS 80
Cdd:COG3870    1 MKLVIAIVQDEDANKLIDALVEAGFRATKLASTGGFLREGNTTLLIGVEDERVDEVLEIIKENCKSRKQFVTPPSPMAGS 80

                         90       100
                 ....*....|....*....|....*....
gi 488392106  81 ADSYIPYPVEVEVGGATVFVMPIDAFHRF 109
Cdd:COG3870   81 GDSYIPYPVEVEVGGATVFVLDVERFEKF 109
 
Name Accession Description Interval E-value
CdAMP_rec pfam06153
Cyclic-di-AMP receptor; CdAMP is a family of bacterial cyclic-di-AMP receptor proteins. ...
 1-109 4.86e-68

Cyclic-di-AMP receptor; CdAMP is a family of bacterial cyclic-di-AMP receptor proteins. Cyclic-di-AMP (c-di-AMP) is a bacterial secondary messenger involved in various processes, including sensing of DNA-integrity, cell wall metabolism and potassium transport. CdAMP_rec has a ferredoxin-like fold and is structurally related to Pii-signal transduction proteins.


Pssm-ID: 283747  Cd Length: 109  Bit Score: 199.50  E-value: 4.86e-68
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488392106    1 MKMIIAIIQDQDSQELSDQLVKHDFRATKLATTGGFLRAGNTTFLCGVDDDRVDDILTVIDNTCGNREQLVSPMTPMGGS 80
Cdd:pfam06153   1 MKLVIAIVQDQDSNRLSDALTEQNFRATKLATTGGFLKAGNTTLMIGVEDERVDDVLSIIKDNCKTRDQLVTPISPMGGS 80

                          90       100
                  ....*....|....*....|....*....
gi 488392106   81 ADSYIPYPVEVEVGGATVFVMPIDAFHRF 109
Cdd:pfam06153  81 ADSYVPYPVEVEVGGATVFVLPVEKFHKF 109
DarA COG3870
Cyclic di-AMP receptor DarA/PstA [Signal transduction mechanisms];
1-109 4.96e-67

Cyclic di-AMP receptor DarA/PstA [Signal transduction mechanisms];


Pssm-ID: 443079  Cd Length: 109  Bit Score: 196.92  E-value: 4.96e-67
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488392106   1 MKMIIAIIQDQDSQELSDQLVKHDFRATKLATTGGFLRAGNTTFLCGVDDDRVDDILTVIDNTCGNREQLVSPMTPMGGS 80
Cdd:COG3870    1 MKLVIAIVQDEDANKLIDALVEAGFRATKLASTGGFLREGNTTLLIGVEDERVDEVLEIIKENCKSRKQFVTPPSPMAGS 80

                         90       100
                 ....*....|....*....|....*....
gi 488392106  81 ADSYIPYPVEVEVGGATVFVMPIDAFHRF 109
Cdd:COG3870   81 GDSYIPYPVEVEVGGATVFVLDVERFEKF 109
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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