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Conserved domains on  [gi|488404577|ref|WP_002473962|]
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MULTISPECIES: ABC transporter permease [Staphylococcus]

Protein Classification

ABC transporter permease( domain architecture ID 10790725)

ABC transporter permease is the transmembrane subunit (TM) found in a periplasmic binding protein (PBP)-dependent ATP-binding cassette (ABC) transporter involved in the import of iron and iron-containing compounds

Gene Ontology:  GO:0043190|GO:0140359|GO:0042626|GO:0016020|GO:0006826
PubMed:  25750732|24638992|18535149|17723295
TCDB:  3.A.1

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CeuB COG4606
ABC-type enterochelin transport system, permease component [Inorganic ion transport and ...
 6-321 2.68e-140

ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism];


:

Pssm-ID: 443656  Cd Length: 318  Bit Score: 399.11  E-value: 2.68e-140
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488404577   6 KGYTLFILLVILTIVSLFIGVSQLSLIDIFHLSDEQMNILFSSRIPRTVSILLSGSSLALSGLIMQQMMQNKFVSPTTAG 85
Cdd:COG4606    3 KLRLLILLLLVLSILSLFIGVSDVSLSDLLSLDPEALQILLISRLPRTLAILLAGASLSVAGLIMQQLTRNRFVEPTTAG 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488404577  86 TMEWAKLGILISLLFFPNGHILIKLLFAVVLSIVGTFLFVQLINLIRVKDVIFVPLLGIMIGGILSSFTTFVALRTNALQ 165
Cdd:COG4606   83 TMESAKLGILVALLLFPGASLLGKMLVAFVFALAGTLLFLAILRRIPFKDALLVPLVGLMLGGVISAITTFFAYRFDLLQ 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488404577 166 SIGNWLTGNFAVITSGRFEVLYLTIPLLILAFVFANHFTIAGMGKDFSHNLGVSYEKIIKIALFITATLTALVVVTVGTL 245
Cdd:COG4606  163 SLSSWLQGDFSGVLRGRYELLWLSAPLAVLAYLYADRFTIAGMGEDFATNLGLNYRRVVNLGLVIVALITAVVVVTVGSI 242

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 488404577 246 PFLGLIVPNIISIYRGDHLKNALPHTLMLGAIFVLIADIIGRIIVYPYEINIGLTIGVFGTIIFLILLMKGRKNYA 321
Cdd:COG4606  243 PFLGLIVPNIVSLYMGDNLRRTLPWVALLGAGFVLACDILGRLIIYPYEIPIGTVVGVVGSAIFLYLLLRRRRRAA 318
 
Name Accession Description Interval E-value
CeuB COG4606
ABC-type enterochelin transport system, permease component [Inorganic ion transport and ...
 6-321 2.68e-140

ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 443656  Cd Length: 318  Bit Score: 399.11  E-value: 2.68e-140
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488404577   6 KGYTLFILLVILTIVSLFIGVSQLSLIDIFHLSDEQMNILFSSRIPRTVSILLSGSSLALSGLIMQQMMQNKFVSPTTAG 85
Cdd:COG4606    3 KLRLLILLLLVLSILSLFIGVSDVSLSDLLSLDPEALQILLISRLPRTLAILLAGASLSVAGLIMQQLTRNRFVEPTTAG 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488404577  86 TMEWAKLGILISLLFFPNGHILIKLLFAVVLSIVGTFLFVQLINLIRVKDVIFVPLLGIMIGGILSSFTTFVALRTNALQ 165
Cdd:COG4606   83 TMESAKLGILVALLLFPGASLLGKMLVAFVFALAGTLLFLAILRRIPFKDALLVPLVGLMLGGVISAITTFFAYRFDLLQ 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488404577 166 SIGNWLTGNFAVITSGRFEVLYLTIPLLILAFVFANHFTIAGMGKDFSHNLGVSYEKIIKIALFITATLTALVVVTVGTL 245
Cdd:COG4606  163 SLSSWLQGDFSGVLRGRYELLWLSAPLAVLAYLYADRFTIAGMGEDFATNLGLNYRRVVNLGLVIVALITAVVVVTVGSI 242

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 488404577 246 PFLGLIVPNIISIYRGDHLKNALPHTLMLGAIFVLIADIIGRIIVYPYEINIGLTIGVFGTIIFLILLMKGRKNYA 321
Cdd:COG4606  243 PFLGLIVPNIVSLYMGDNLRRTLPWVALLGAGFVLACDILGRLIIYPYEIPIGTVVGVVGSAIFLYLLLRRRRRAA 318
FecCD pfam01032
FecCD transport family; This is a sub-family of bacterial binding protein-dependent transport ...
 13-315 1.43e-47

FecCD transport family; This is a sub-family of bacterial binding protein-dependent transport systems family. This Pfam entry contains the inner components of this multicomponent transport system.


Pssm-ID: 426003  Cd Length: 311  Bit Score: 162.31  E-value: 1.43e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488404577   13 LLVILTIVSLFIGVSQLSLIDIFH-----LSDEQMNILFSSRIPRTVSILLSGSSLALSGLIMQQMMQNKFVSPTTAGTM 87
Cdd:pfam01032   1 LLLLLILLSLFIGAVKISPSDVFSallggDDSLAALIVLDLRLPRVLAALLVGAALAVSGALLQTVTRNPLADPSILGIS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488404577   88 EWAKLGILISLLFFPNGHILIKLLFAVVLSIVGTFLFVQLINLIRVKDVIFVPLLGIMIGGILSSFTTFVALRTN--ALQ 165
Cdd:pfam01032  81 SGAALGAVLAILLGGSLSLFALPLAAFIGALLAALLVYFLSRGRGGASPLRLILAGIAVSALLSALTSLLLLLLNpeALQ 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488404577  166 SIGNWLTGNFAVITSGRF-EVLYLTIPLLILAFVFANHFTIAGMGKDFSHNLGVSYEKIIKIALFITATLTALVVVTVGT 244
Cdd:pfam01032 161 SILFWLMGSLSGANWSDVlILLPLLLIGLILLLLLARKLNLLSLGDDTAKSLGVNVNRVRLLLLLLASLLTAASVAVVGP 240

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 488404577  245 LPFLGLIVPNIISIYRGDHLKNALPHTLMLGAIFVLIADIIGRIIVYPYEINIGLTIGVFGTIIFLILLMK 315
Cdd:pfam01032 241 IGFVGLIVPHIARLLVGANHRRLLPLSALLGALLLLLADILARTILSPYELPVGIVTALIGAPFFIYLLLR 311
TM_ABC_iron-siderophores_like cd06550
Transmembrane subunit (TM), of Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 69-313 4.73e-25

Transmembrane subunit (TM), of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters involved in the uptake of siderophores, heme, vitamin B12, or the divalent cations Mg2+ and Zn2+. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The TMs are bundles of alpha helices that transverse the cytoplasmic membrane multiple times. The two ABCs bind and hydrolyze ATP and drive the transport reaction. Each TM has a prominent cytoplasmic loop which contacts an ABC and represents a conserved motif. The two TMs form either a homodimer (e.g. in the case of the BtuC subunits of the Escherichia coli BtuCD vitamin B12 transporter), a heterodimer (e.g. the TroC and TroD subunits of the Treponema pallidum general transition metal transporter, TroBCD), or a pseudo-heterodimer (e.g. the FhuB protein of the E. coli ferrichrome transporter, FhuBC). FhuB contains two tandem TMs which associate to form the pseudo-heterodimer. Both FhuB TMs are found in this hierarchy.


Pssm-ID: 119348 [Multi-domain]  Cd Length: 261  Bit Score: 101.48  E-value: 4.73e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488404577  69 IMQQMMQNKFVSPTTAGTMEWAKLGILISLLFFPNGHILIKLLFAVVLSIVGTFLFVqLINLIRVKDVIFVPLLGIMIGG 148
Cdd:cd06550   17 ILQSLTRNRLASPSILGISHGALLGVVLALLLGIGLSNYALGAFAFAGALAIALLVL-LLASRGGLSPSKLILIGIVLSA 95

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488404577 149 ILSSFTTFVAL-RTNALQSIGNWLTGNFAVITSGR-FEVLYLTIPLLILAFVFANHFTIAGMGKDFSHNLGVSYEKIIKI 226
Cdd:cd06550   96 FFSAGVILISLlSDDSLQDLNIWLFGSILGVTWEDlLILLIILLLVLLLLLLLSRKLNLLTFDEDLAKSLGINVNLLRLL 175

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488404577 227 ALFITATLTALVVVTVGTLPFLGLIVPNIISIYRGDHLKNALPHTLMLGAIFVLIADIIGRIIvYPYEINIGLTIGVFGT 306
Cdd:cd06550  176 LLLLVALLVVAAVALVGVILFVGLIAPHLARRLFGRSHRYLLPLSALLGAILLLLGDLLSRTL-LPSELPVGPVTALLGA 254


                 ....*..
gi 488404577 307 IIFLILL 313
Cdd:cd06550  255 PYFLYLL 261
PRK10577 PRK10577
Fe(3+)-hydroxamate ABC transporter permease FhuB;
10-318 7.26e-21

Fe(3+)-hydroxamate ABC transporter permease FhuB;


Pssm-ID: 236720 [Multi-domain]  Cd Length: 668  Bit Score: 92.98  E-value: 7.26e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488404577  10 LFILLVILTIVSLFIGVSQlslIDIFHLSDEQMNILFSSRIPRTVSILLSGSSLALSGLIMQQMMQNKFVSPTTAGTMEW 89
Cdd:PRK10577 361 LGLLLLLALVVALSFGRDA---HGWNWLSGQLLDALLPLRLPRLLAALLAGAMLAVAGTLLQRLTRNPLASPEVLGISSG 437

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488404577  90 AKLGILISLLFFPnGHILIKLLFAVVLSIVGTFLFVQLINLIRVKDVIFVPLLGIMIGGILSSFTTFVALRTNA-LQSIG 168
Cdd:PRK10577 438 AGLGVVLALFLVP-GAGFGWLLAAALLGALAALALILLLARRGGFAPERLLLTGIALSALFTALIQLLLASGDPrAAQLL 516

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488404577 169 NWLTGNfaviTSGR--FEVLYLTIPLLIL---AFVFANHFTIAGMGKDFSHNLGVSYEKIIKIALFITATLTALVVVTVG 243
Cdd:PRK10577 517 TWLSGS----TYGVtwAQALPLLIVAVLLlalALLLRRWLDLLPLGDDTARALGLPVTRARLALLLLAALLTAAATATVG 592

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 488404577 244 TLPFLGLIVPNIISIYRGDHLKNALPHTLMLGAIFVLIADIIGRIIVYPYEINIGLTIGVFGTIIFLILLMKGRK 318
Cdd:PRK10577 593 PLSFVGLMAPHLARMLGGRRARPQLVLAALLGALLMVLADWLGRTLLFPYQIPAGLLAALIGAPYFLWLLRRSRR 667
 
Name Accession Description Interval E-value
CeuB COG4606
ABC-type enterochelin transport system, permease component [Inorganic ion transport and ...
 6-321 2.68e-140

ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 443656  Cd Length: 318  Bit Score: 399.11  E-value: 2.68e-140
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488404577   6 KGYTLFILLVILTIVSLFIGVSQLSLIDIFHLSDEQMNILFSSRIPRTVSILLSGSSLALSGLIMQQMMQNKFVSPTTAG 85
Cdd:COG4606    3 KLRLLILLLLVLSILSLFIGVSDVSLSDLLSLDPEALQILLISRLPRTLAILLAGASLSVAGLIMQQLTRNRFVEPTTAG 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488404577  86 TMEWAKLGILISLLFFPNGHILIKLLFAVVLSIVGTFLFVQLINLIRVKDVIFVPLLGIMIGGILSSFTTFVALRTNALQ 165
Cdd:COG4606   83 TMESAKLGILVALLLFPGASLLGKMLVAFVFALAGTLLFLAILRRIPFKDALLVPLVGLMLGGVISAITTFFAYRFDLLQ 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488404577 166 SIGNWLTGNFAVITSGRFEVLYLTIPLLILAFVFANHFTIAGMGKDFSHNLGVSYEKIIKIALFITATLTALVVVTVGTL 245
Cdd:COG4606  163 SLSSWLQGDFSGVLRGRYELLWLSAPLAVLAYLYADRFTIAGMGEDFATNLGLNYRRVVNLGLVIVALITAVVVVTVGSI 242

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 488404577 246 PFLGLIVPNIISIYRGDHLKNALPHTLMLGAIFVLIADIIGRIIVYPYEINIGLTIGVFGTIIFLILLMKGRKNYA 321
Cdd:COG4606  243 PFLGLIVPNIVSLYMGDNLRRTLPWVALLGAGFVLACDILGRLIIYPYEIPIGTVVGVVGSAIFLYLLLRRRRRAA 318
FecCD pfam01032
FecCD transport family; This is a sub-family of bacterial binding protein-dependent transport ...
 13-315 1.43e-47

FecCD transport family; This is a sub-family of bacterial binding protein-dependent transport systems family. This Pfam entry contains the inner components of this multicomponent transport system.


Pssm-ID: 426003  Cd Length: 311  Bit Score: 162.31  E-value: 1.43e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488404577   13 LLVILTIVSLFIGVSQLSLIDIFH-----LSDEQMNILFSSRIPRTVSILLSGSSLALSGLIMQQMMQNKFVSPTTAGTM 87
Cdd:pfam01032   1 LLLLLILLSLFIGAVKISPSDVFSallggDDSLAALIVLDLRLPRVLAALLVGAALAVSGALLQTVTRNPLADPSILGIS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488404577   88 EWAKLGILISLLFFPNGHILIKLLFAVVLSIVGTFLFVQLINLIRVKDVIFVPLLGIMIGGILSSFTTFVALRTN--ALQ 165
Cdd:pfam01032  81 SGAALGAVLAILLGGSLSLFALPLAAFIGALLAALLVYFLSRGRGGASPLRLILAGIAVSALLSALTSLLLLLLNpeALQ 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488404577  166 SIGNWLTGNFAVITSGRF-EVLYLTIPLLILAFVFANHFTIAGMGKDFSHNLGVSYEKIIKIALFITATLTALVVVTVGT 244
Cdd:pfam01032 161 SILFWLMGSLSGANWSDVlILLPLLLIGLILLLLLARKLNLLSLGDDTAKSLGVNVNRVRLLLLLLASLLTAASVAVVGP 240

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 488404577  245 LPFLGLIVPNIISIYRGDHLKNALPHTLMLGAIFVLIADIIGRIIVYPYEINIGLTIGVFGTIIFLILLMK 315
Cdd:pfam01032 241 IGFVGLIVPHIARLLVGANHRRLLPLSALLGALLLLLADILARTILSPYELPVGIVTALIGAPFFIYLLLR 311
FepD COG0609
ABC-type Fe3+-siderophore transport system, permease component [Inorganic ion transport and ...
 21-317 5.67e-35

ABC-type Fe3+-siderophore transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440374  Cd Length: 306  Bit Score: 129.03  E-value: 5.67e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488404577  21 SLFIGVSQLSLIDIFH------LSDEQMNILFSSRIPRTVSILLSGSSLALSGLIMQQMMQNKFVSPTTAGTMEWAKLGI 94
Cdd:COG0609    1 SLSLGAVPISLSDVLRallgpdGDPTADLIVWDLRLPRVLLALLVGAALAVAGALMQGLTRNPLADPGILGVSSGAALGA 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488404577  95 LISLLFFPNGHILIKLLFAVVLSIVGTFLFVQLINLIRVKDVIFVPLLGIMIGGILSSFTTFVALRTN--ALQSIGNWLT 172
Cdd:COG0609   81 VLAIVLGGGLSALGLPLAAFLGALLAALLVYLLARRGGGLSPLRLVLAGVAVSALFSALTSLLLLLADpeQLRSIVFWLM 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488404577 173 GNFAVITSGRFE-VLYLTIPLLILAFVFANHFTIAGMGKDFSHNLGVSYEKIIKIALFITATLTALVVVTVGTLPFLGLI 251
Cdd:COG0609  161 GSLAGASWDDVLlLLPVLLIGLLLALLLARALNALALGDETARSLGVNVERLRLLLLLLAALLTGAAVAVAGPIGFVGLV 240

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 488404577 252 VPNIISIYRGDHLKNALPHTLMLGAIFVLIADIIGRIIVYPYEINIGLTIGVFGTIIFLILLMKGR 317
Cdd:COG0609  241 VPHIARLLVGPDHRRLLPASALLGALLLLLADTLARTILAPAELPVGIVTALIGAPFFLYLLRRRR 306
TM_ABC_iron-siderophores_like cd06550
Transmembrane subunit (TM), of Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 69-313 4.73e-25

Transmembrane subunit (TM), of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters involved in the uptake of siderophores, heme, vitamin B12, or the divalent cations Mg2+ and Zn2+. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The TMs are bundles of alpha helices that transverse the cytoplasmic membrane multiple times. The two ABCs bind and hydrolyze ATP and drive the transport reaction. Each TM has a prominent cytoplasmic loop which contacts an ABC and represents a conserved motif. The two TMs form either a homodimer (e.g. in the case of the BtuC subunits of the Escherichia coli BtuCD vitamin B12 transporter), a heterodimer (e.g. the TroC and TroD subunits of the Treponema pallidum general transition metal transporter, TroBCD), or a pseudo-heterodimer (e.g. the FhuB protein of the E. coli ferrichrome transporter, FhuBC). FhuB contains two tandem TMs which associate to form the pseudo-heterodimer. Both FhuB TMs are found in this hierarchy.


Pssm-ID: 119348 [Multi-domain]  Cd Length: 261  Bit Score: 101.48  E-value: 4.73e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488404577  69 IMQQMMQNKFVSPTTAGTMEWAKLGILISLLFFPNGHILIKLLFAVVLSIVGTFLFVqLINLIRVKDVIFVPLLGIMIGG 148
Cdd:cd06550   17 ILQSLTRNRLASPSILGISHGALLGVVLALLLGIGLSNYALGAFAFAGALAIALLVL-LLASRGGLSPSKLILIGIVLSA 95

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488404577 149 ILSSFTTFVAL-RTNALQSIGNWLTGNFAVITSGR-FEVLYLTIPLLILAFVFANHFTIAGMGKDFSHNLGVSYEKIIKI 226
Cdd:cd06550   96 FFSAGVILISLlSDDSLQDLNIWLFGSILGVTWEDlLILLIILLLVLLLLLLLSRKLNLLTFDEDLAKSLGINVNLLRLL 175

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488404577 227 ALFITATLTALVVVTVGTLPFLGLIVPNIISIYRGDHLKNALPHTLMLGAIFVLIADIIGRIIvYPYEINIGLTIGVFGT 306
Cdd:cd06550  176 LLLLVALLVVAAVALVGVILFVGLIAPHLARRLFGRSHRYLLPLSALLGAILLLLGDLLSRTL-LPSELPVGPVTALLGA 254


                 ....*..
gi 488404577 307 IIFLILL 313
Cdd:cd06550  255 PYFLYLL 261
PRK10577 PRK10577
Fe(3+)-hydroxamate ABC transporter permease FhuB;
10-318 7.26e-21

Fe(3+)-hydroxamate ABC transporter permease FhuB;


Pssm-ID: 236720 [Multi-domain]  Cd Length: 668  Bit Score: 92.98  E-value: 7.26e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488404577  10 LFILLVILTIVSLFIGVSQlslIDIFHLSDEQMNILFSSRIPRTVSILLSGSSLALSGLIMQQMMQNKFVSPTTAGTMEW 89
Cdd:PRK10577 361 LGLLLLLALVVALSFGRDA---HGWNWLSGQLLDALLPLRLPRLLAALLAGAMLAVAGTLLQRLTRNPLASPEVLGISSG 437

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488404577  90 AKLGILISLLFFPnGHILIKLLFAVVLSIVGTFLFVQLINLIRVKDVIFVPLLGIMIGGILSSFTTFVALRTNA-LQSIG 168
Cdd:PRK10577 438 AGLGVVLALFLVP-GAGFGWLLAAALLGALAALALILLLARRGGFAPERLLLTGIALSALFTALIQLLLASGDPrAAQLL 516

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488404577 169 NWLTGNfaviTSGR--FEVLYLTIPLLIL---AFVFANHFTIAGMGKDFSHNLGVSYEKIIKIALFITATLTALVVVTVG 243
Cdd:PRK10577 517 TWLSGS----TYGVtwAQALPLLIVAVLLlalALLLRRWLDLLPLGDDTARALGLPVTRARLALLLLAALLTAAATATVG 592

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 488404577 244 TLPFLGLIVPNIISIYRGDHLKNALPHTLMLGAIFVLIADIIGRIIVYPYEINIGLTIGVFGTIIFLILLMKGRK 318
Cdd:PRK10577 593 PLSFVGLMAPHLARMLGGRRARPQLVLAALLGALLMVLADWLGRTLLFPYQIPAGLLAALIGAPYFLWLLRRSRR 667
fecD PRK09777
Fe(3+) dicitrate ABC transporter permease subunit FecD;
9-317 8.89e-20

Fe(3+) dicitrate ABC transporter permease subunit FecD;


Pssm-ID: 182071  Cd Length: 318  Bit Score: 87.79  E-value: 8.89e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488404577   9 TLFILLVILTIVSLFIGVSQLS---LIDIFHLSDEQMNILFSSRIPRTVSILLSGSSLALSGLIMQQMMQNKFVSPTTAG 85
Cdd:PRK09777   8 FITLALAGCALLSLRMGVIPLPwraLLTDWQAGDEHYYVLMEYRLPRLLLALFVGAALAVSGVLVQGIVRNPLASPDILG 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488404577  86 TMEWAKLGILISLLFFPNGHILIKLLFAVVLSIVGTFLFVQLINLIRvkdVIFVPLLGIMIGGILSSFTTFVALRTNalQ 165
Cdd:PRK09777  88 VNHAASLASVGALLLFPSLPVMWLPLLAFIGGMAGLILLKMLAGTHQ---PMKLALTGVALSALWASLTDYLMLSRP--Q 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488404577 166 SIGN---WLTGNFAvitsGR-FEVLYLTIPLLI----LAFVFANHFTIAGMGKDFSHNLGVSYEKIIKIALFITATLTAL 237
Cdd:PRK09777 163 DINNallWLTGSLW----GRdWSFVKVALPWLIlllpLSLSFCRDLDLLALGDARATTLGVSVPHTQFWALLLAVALTAT 238

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488404577 238 VVVTVGTLPFLGLIVPNIISIYRGDHLKNALPHTLMLGAIFVLIADIIGRIIVYPYEINIGLTIGVFGTIIFLILLMKGR 317
Cdd:PRK09777 239 GVAACGPISFIGLVVPHLMRSLVGGRHRRLLPVSALTGALLLLLADLLARIIHPPLELPAGVLTAIIGAPWFFWLLVRMR 318
PRK10577 PRK10577
Fe(3+)-hydroxamate ABC transporter permease FhuB;
10-318 6.05e-19

Fe(3+)-hydroxamate ABC transporter permease FhuB;


Pssm-ID: 236720 [Multi-domain]  Cd Length: 668  Bit Score: 87.59  E-value: 6.05e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488404577  10 LFILLVILTIVSLFIGVSQLSLIDIFHLSDE---QMNILFSSRIPRTVSILLSGSSLALSGLIMQQMMQNKFVSPTTAGT 86
Cdd:PRK10577  20 LLLLALALTLTQLSAALPLSQWLQALWGPDAddlEQLLLHYSRLPRLAIALLVGAALGLAGALLQQVLRNPLASPTTLGV 99

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488404577  87 MEWAKLGILISLLFFPNGHILIKLLFAVVLSIVgTFLFVQLINLIRVKDVIFVPLLGIMIGGILSSFTT-FVALRTNALQ 165
Cdd:PRK10577 100 AAGAQLALVLATLFAPALLALASQLAAFAGGLL-AAALVFALAGGKRLSPLRLVLAGMVVSLYLGALTTlLLLFNEQYLQ 178

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488404577 166 SIGNWLTGNFAVI-TSGRFEVLYLTIPLLILAFVFANHFTIAGMGKDFSHNLGVSYEKIIKIALFITATLTALVVVTVGT 244
Cdd:PRK10577 179 GLFLWGAGSLAQNdWSGVQRLLPRLLVGLLLLLLLARPLTLLGLGDDVARSLGLAVSLTRLAALALAVLLSAAVVSAVGP 258

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 488404577 245 LPFLGLIVPNIISIYRGDHLKNALPHTLMLGAIFVLIADIIGRIIVYPYEINI--GLTIGVFGTIIFLILLMKGRK 318
Cdd:PRK10577 259 IGFIGLAAPNLARLLGARRLRARLPLSPLIGALLLLLTDQLVRLLAGVGGELLptGAVTALIGAPLLLWLLPRLRS 334
fecC PRK11228
iron-dicitrate ABC transporter permease FecC;
165-312 4.82e-13

iron-dicitrate ABC transporter permease FecC;


Pssm-ID: 183042  Cd Length: 323  Bit Score: 68.57  E-value: 4.82e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488404577 165 QSIGNWLTGNFAVITSGRFEVLY-LTIPLLILAFVFANHFTIAGMGKDFSHNLGVSYEKIIKIALFITATLTALVVVTVG 243
Cdd:PRK11228 170 YGIFYWLAGGVSHARWQEVWQLLpFVVTAVPVVLLLANQLNLLNLSDSSAHTLGVNLTRLRLVVNMLVLLLVGACVSVAG 249

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 488404577 244 TLPFLGLIVPNIISIYRGDHLKNALPHTLMLGAIFVLIADIIGRIIVYPYEINIGLTIGVFGTIIFLIL 312
Cdd:PRK11228 250 PVAFIGLLVPHLARFWIGYDQRNVLPMSMLLGATLMLLADLLARALAFPGELPAGAVLALIGAPCFVWL 318
btuC PRK09535
cobalamin ABC transporter permease BtuC;
35-315 1.39e-10

cobalamin ABC transporter permease BtuC;


Pssm-ID: 236553  Cd Length: 366  Bit Score: 61.69  E-value: 1.39e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488404577  35 FHLSDEQMNILFSSRIPRTVSILLSGSSLALSGLIMQQMMQNKFVSPTTAGTMEWAKLGIlISLLFFPNGHILIKLLFAV 114
Cdd:PRK09535  81 FAVPETAQTIVLQIRLPRILLAATVGFALAAAGTVMQGFFRNPMADPSIIGVSSGAAVGA-VAAIVLPLAVPFGLQAAAF 159

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488404577 115 VLSIVGTFLfvqlINLIRVKD----VIFVPLLGIMIGGILSSFTTFVALRT-NALQSIGNWLTGNFAVITSGRFEV-LYL 188
Cdd:PRK09535 160 AGALVAAFG----VYAIATENgrtpVATLLLAGVAVQTFLGAVISYLLLHSgESLRRAVYWLMGHLHGSTWSDVEVaLPV 235

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488404577 189 TIPLLILAFVFANHFTIAGMGKDFSHNLGVSYEKIIKIALFITATLTALVVVTVGTLPFLGLIVPNIISIYRGDHLKNAL 268
Cdd:PRK09535 236 VVVGFVVLLAYARDLNVLLLGEEDAHTLGIEVERTKRLLLALASVVTAAAVAVAGVIGFVGLIVPHVMRLLVGPDHRILL 315

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*..
gi 488404577 269 PHTLMLGAIFVLIADIIGRiiVYPYEINIGLTIGVFGTIIFLILLMK 315
Cdd:PRK09535 316 PTSALAGASFLVATDTVAR--SGPAEVPVGIVTAALGAPFFLYLLRT 360
CeuC COG4605
ABC-type enterochelin transport system, permease component [Inorganic ion transport and ...
 107-318 2.69e-10

ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 443655  Cd Length: 317  Bit Score: 60.51  E-value: 2.69e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488404577 107 LIKLLFAVVLSIVGTFLFVQLINLIRVKDVIFVPLLGIMIGGILSSFTTFVALRTN-----ALQSIGnwltgnFAVITSG 181
Cdd:COG4605  102 LLNFLLEVALMVGFSLLLYRWLFRGGRRNLHLLLLVGVVLGTLFRSLSSFLQRLIDpnefdVLQDRL------FASFNNV 175

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488404577 182 RFEVLYLTIPLLILAFVFA----NHFTIAGMGKDFSHNLGVSYEKIIKIALFITATLTALVVVTVGTLPFLGLIVPNII- 256
Cdd:COG4605  176 NTDLLLIAAVIVLLALLLLwrlrRRLDVLALGRDQAINLGVDYRRVVRRLLILVAVLVAVSTALVGPITFLGLLVANLAy 255

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 488404577 257 SIYRGDHLKNALPHTLMLGAIFVLIADIIGRIIVYpYEINIGLTIGVFGTIIFLILLMKGRK 318
Cdd:COG4605  256 QLFGTYRHRYLLPAAALIGVIALVGGQFVVEHVFN-FSTTLSVIIEFVGGIYFLYLLLRKRR 316
PRK03784 PRK03784
vtamin B12-transporter permease; Provisional
 10-317 7.48e-10

vtamin B12-transporter permease; Provisional


Pssm-ID: 235159  Cd Length: 331  Bit Score: 59.20  E-value: 7.48e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488404577  10 LFILLVILTIVSLFIGVSQLSLIDIFhlSDEQMNILFSSRIPRTVSILLSGSSLALSGLIMQQMMQNKFVSPTTAGTMEW 89
Cdd:PRK03784  21 LSVLLLLALLLSLCAGEQWISPGDWL--SPRGELFVWQLRLPRTLAVLLVGAALAVSGAVMQALFENPLAEPGLLGVSNG 98

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488404577  90 AKLGILISLLFfpnGHILIKLLFAVVLSIVGTFLF-VQLINLIRVKDVIFVPLL--GIMIGGILSSFTTF-VALRTN-AL 164
Cdd:PRK03784  99 AGVALVAAVLL---GQGLLPPWALSLCAIAGALLItLILLRFARRHRLSTSRLLlaGVALGIICSALMTWaVYFSTSlDL 175

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488404577 165 QSIGNWLTGNFAVITSGRFEVLYLTIPLLILAFVFANHFTIAGMGKDFSHNLGVSYEKIIKIALFITATLTALVVVTVGT 244
Cdd:PRK03784 176 RQLMYWMMGGFGGVDWRQSWLMLALLPVLIWLCCQGRPLNMLALGEISARQLGLPLWFWRNLLVLATGWLVGVSVALAGA 255

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 488404577 245 LPFLGLIVPNIISIYRGDHLKNALPHTLMLGAIFVLIADIIGRIIVYPYEINIGLTIGVFGTIIFLILLMKGR 317
Cdd:PRK03784 256 IGFIGLVIPHILRLCGLTDHRVLLPGCALAGASLLLLADIVARLALASAELPIGVVTATLGAPVFIWLLLRSH 328
PRK10441 PRK10441
Fe(3+)-siderophore ABC transporter permease;
9-319 2.10e-09

Fe(3+)-siderophore ABC transporter permease;


Pssm-ID: 182464  Cd Length: 335  Bit Score: 57.79  E-value: 2.10e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488404577   9 TLFILLVILTIVSLFIGVSQLSLIDIFH-----LSDEQMNILFSSRIPRTVSILLSGSSLALSGLIMQQMMQNKFVSPTT 83
Cdd:PRK10441  15 GLLLLLIIATALSLLIGAKSLPASVVLEalsgtCQSADCTIVLDARLPRTLAGLLAGGALGLAGALMQTLTRNPLADPGL 94

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488404577  84 AGTMEWAKLGILISLLFFPNGHILIKLLFAVVLSIVGTFL--FVQLINLIRVKDVIFVpLLGIMIGGILSSFTTFVAL-R 160
Cdd:PRK10441  95 LGVNAGASFAIVLGAALFGYSSAQEQLAMAFAGALVASLIvaFTGSQGGGQLSPVRLT-LAGVALAAVLEGLTSGIALlN 173

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488404577 161 TNALQSIGNWLTGNFAVITsgrFEVLYLTIPLL----ILAFVFANHFTIAGMGKDFSHNLGVSYEKIIKIALFITATLTA 236
Cdd:PRK10441 174 PDVYDQLRFWQAGSLDIRN---LHTLKVVLIPVliagATALLLSRALNSLSLGSDTATALGSRVARTQLIGLLAITVLCG 250

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488404577 237 LVVVTVGTLPFLGLIVPNIISIYRGDHLKNALPHTLMLGAIFVLIADIIGRIIVyPYEINIGLTIGVFGTIIfLILLMKG 316
Cdd:PRK10441 251 SATAVVGPIAFIGLMMPHMARWLVGADHRWSLPVTLLATPALLLFADIIGRLLV-PGELRVSVVSAFIGAPV-LIFLVRR 328


                 ...
gi 488404577 317 RKN 319
Cdd:PRK10441 329 KTR 331
PRK10440 PRK10440
iron-enterobactin ABC transporter permease;
49-318 4.70e-08

iron-enterobactin ABC transporter permease;


Pssm-ID: 182463  Cd Length: 330  Bit Score: 53.56  E-value: 4.70e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488404577  49 RIPRTVSILLSGSSLALSGLIMQQMMQNKFVSPTTAGTMEWAKLGILISLLFFPNGHILIKllFAVVLSIVGTFLFVQLI 128
Cdd:PRK10440  59 RLPRVLMALLIGAALGVSGAIFQSLMRNPLGSPDVMGFNTGAWSGVLVAMVLFGQDLTAIA--LAAMAGGIVTSLLVWLL 136

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488404577 129 NLIRVKDVIFVPLLGIMIGGILSSFTTFVALRTN--ALQSIGNWLTGNFAVITSGR-FEVLYLTIPLLILAFVFANHFTI 205
Cdd:PRK10440 137 AWRNGIDTFRLIIIGIGVRAMLVAFNTWLLLKASleTALTAGLWNAGSLNGLTWAKtSPSAPIIILMLIAAALLVRRMRL 216

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488404577 206 AGMGKDFSHNLGVSYEKIIKIALFITATLTALVVVTVGTLPFLGLIVPNIISIYRGDHlKNALPHTLMLGAIFVLIADII 285
Cdd:PRK10440 217 LEMGDDTACALGVSVERSRLLLMLVAVVLTAAATALAGPISFIALVAPHIARRLSGTA-RWGLTQAALCGALLLLAADLC 295

                        250       260       270
                 ....*....|....*....|....*....|....
gi 488404577 286 GRIIVYPYEINIG-LTIGVFGTIIFLILLMKGRK 318
Cdd:PRK10440 296 AQQLFMPYQLPVGvVTVSLGGIYLIVLLIQESRK 329
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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