|
Name |
Accession |
Description |
Interval |
E-value |
| ABC_drug_resistance_like |
cd03264 |
ABC-type multidrug transport system, ATPase component; The biological function of this family ... |
4-214 |
6.88e-107 |
|
ABC-type multidrug transport system, ATPase component; The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213231 [Multi-domain] Cd Length: 211 Bit Score: 309.12 E-value: 6.88e-107
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 4 IVIKDVNKTYdGKTYALKNINLEIKNGMFGILGRNGSGKSTLMNMLSTILQQSSGTIEINNISLTQTKQ-IRKMIGYLPQ 82
Cdd:cd03264 1 LQLENLTKRY-GKKRALDGVSLTLGPGMYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQkLRRRIGYLPQ 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 83 DFDFYPNMKVKETLHYLGILSGIPKANLKINVAASLEKVNLVEHQNKKVKSLSGGMKKRLGIAQAIIHNPQVLIVDEPTA 162
Cdd:cd03264 80 EFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTA 159
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 488422644 163 GLDPEERVRLRHLLSNLAKDKIVIISTHIVSDIESTCENIAILDKGVIAYKG 214
Cdd:cd03264 160 GLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211
|
|
| CcmA |
COG1131 |
ABC-type multidrug transport system, ATPase component [Defense mechanisms]; |
4-221 |
7.37e-93 |
|
ABC-type multidrug transport system, ATPase component [Defense mechanisms];
Pssm-ID: 440746 [Multi-domain] Cd Length: 236 Bit Score: 274.63 E-value: 7.37e-93
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 4 IVIKDVNKTYdGKTYALKNINLEIKNG-MFGILGRNGSGKSTLMNMLSTILQQSSGTIEINNISL-TQTKQIRKMIGYLP 81
Cdd:COG1131 1 IEVRGLTKRY-GDKTALDGVSLTVEPGeIFGLLGPNGAGKTTTIRMLLGLLRPTSGEVRVLGEDVaRDPAEVRRRIGYVP 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 82 QDFDFYPNMKVKETLHYLGILSGIPKANLKINVAASLEKVNLVEHQNKKVKSLSGGMKKRLGIAQAIIHNPQVLIVDEPT 161
Cdd:COG1131 80 QEPALYPDLTVRENLRFFARLYGLPRKEARERIDELLELFGLTDAADRKVGTLSGGMKQRLGLALALLHDPELLILDEPT 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 488422644 162 AGLDPEERVRLRHLLSNLAKD-KIVIISTHIVSDIESTCENIAILDKGVIAYKGSIKNLIE 221
Cdd:COG1131 160 SGLDPEARRELWELLRELAAEgKTVLLSTHYLEEAERLCDRVAIIDKGRIVADGTPDELKA 220
|
|
| NatA |
COG4555 |
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, ... |
4-226 |
2.17e-68 |
|
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, Inorganic ion transport and metabolism];
Pssm-ID: 443618 [Multi-domain] Cd Length: 243 Bit Score: 212.41 E-value: 2.17e-68
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 4 IVIKDVNKTYDGKTyALKNINLEIKNG-MFGILGRNGSGKSTLMNMLSTILQQSSGTIEINNISLT-QTKQIRKMIGYLP 81
Cdd:COG4555 2 IEVENLSKKYGKVP-ALKDVSFTAKDGeITGLLGPNGAGKTTLLRMLAGLLKPDSGSILIDGEDVRkEPREARRQIGVLP 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 82 QDFDFYPNMKVKETLHYLGILSGIPKANLKINVAASLEKVNLVEHQNKKVKSLSGGMKKRLGIAQAIIHNPQVLIVDEPT 161
Cdd:COG4555 81 DERGLYDRLTVRENIRYFAELYGLFDEELKKRIEELIELLGLEEFLDRRVGELSTGMKKKVALARALVHDPKVLLLDEPT 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 488422644 162 AGLDPEERVRLRHLLSNLAK-DKIVIISTHIVSDIESTCENIAILDKGVIAYKGSIKNLIELSDNK 226
Cdd:COG4555 161 NGLDVMARRLLREILRALKKeGKTVLFSSHIMQEVEALCDRVVILHKGKVVAQGSLDELREEIGEE 226
|
|
| ABC_DR_subfamily_A |
cd03230 |
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily ... |
4-210 |
1.62e-66 |
|
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A; This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213197 [Multi-domain] Cd Length: 173 Bit Score: 205.32 E-value: 1.62e-66
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 4 IVIKDVNKTYdGKTYALKNINLEIKNG-MFGILGRNGSGKSTLMNMLSTILQQSSGTIEINNISL-TQTKQIRKMIGYLP 81
Cdd:cd03230 1 IEVRNLSKRY-GKKTALDDISLTVEKGeIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIkKEPEEVKRRIGYLP 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 82 QDFDFYPNMKVKETLHYlgilsgipkanlkinvaaslekvnlvehqnkkvkslSGGMKKRLGIAQAIIHNPQVLIVDEPT 161
Cdd:cd03230 80 EEPSLYENLTVRENLKL------------------------------------SGGMKQRLALAQALLHDPELLILDEPT 123
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 488422644 162 AGLDPEERVRLRHLLSNLAKD-KIVIISTHIVSDIESTCENIAILDKGVI 210
Cdd:cd03230 124 SGLDPESRREFWELLRELKKEgKTILLSSHILEEAERLCDRVAILNNGRI 173
|
|
| YhaQ |
COG4152 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
4-219 |
8.44e-64 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443322 [Multi-domain] Cd Length: 298 Bit Score: 202.65 E-value: 8.44e-64
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 4 IVIKDVNKTYDGKTyALKNINLEIKNG-MFGILGRNGSGKSTLMNMLSTILQQSSGTIEINNISLTQtkQIRKMIGYLPQ 82
Cdd:COG4152 2 LELKGLTKRFGDKT-AVDDVSFTVPKGeIFGLLGPNGAGKTTTIRIILGILAPDSGEVLWDGEPLDP--EDRRRIGYLPE 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 83 DFDFYPNMKVKETLHYLGILSGIPKANLKINVAASLEKVNLVEHQNKKVKSLSGGMKKRLGIAQAIIHNPQVLIVDEPTA 162
Cdd:COG4152 79 ERGLYPKMKVGEQLVYLARLKGLSKAEAKRRADEWLERLGLGDRANKKVEELSKGNQQKVQLIAALLHDPELLILDEPFS 158
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 488422644 163 GLDPEERVRLRHLLSNLA-KDKIVIISTHIVSDIESTCENIAILDKGVIAYKGSIKNL 219
Cdd:COG4152 159 GLDPVNVELLKDVIRELAaKGTTVIFSSHQMELVEELCDRIVIINKGRKVLSGSVDEI 216
|
|
| ABC_subfamily_A |
cd03263 |
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily ... |
4-219 |
1.92e-62 |
|
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Pssm-ID: 213230 [Multi-domain] Cd Length: 220 Bit Score: 196.57 E-value: 1.92e-62
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 4 IVIKDVNKTY-DGKTYALKNINLEIKNG-MFGILGRNGSGKSTLMNMLSTILQQSSGTIEINNISL-TQTKQIRKMIGYL 80
Cdd:cd03263 1 LQIRNLTKTYkKGTKPAVDDLSLNVYKGeIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIrTDRKAARQSLGYC 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 81 PQDFDFYPNMKVKETLHYLGILSGIPKANLKINVAASLEKVNLVEHQNKKVKSLSGGMKKRLGIAQAIIHNPQVLIVDEP 160
Cdd:cd03263 81 PQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEP 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 488422644 161 TAGLDPEERVRLRHLLSNLAKDKIVIISTHIVSDIESTCENIAILDKGVIAYKGSIKNL 219
Cdd:cd03263 161 TSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219
|
|
| GldA_ABC_ATP |
TIGR03522 |
gliding motility-associated ABC transporter ATP-binding subunit GldA; Members of this protein ... |
4-230 |
1.77e-59 |
|
gliding motility-associated ABC transporter ATP-binding subunit GldA; Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Pssm-ID: 132561 [Multi-domain] Cd Length: 301 Bit Score: 191.53 E-value: 1.77e-59
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 4 IVIKDVNKTYdGKTYALKNINLEIKNG-MFGILGRNGSGKSTLMNMLSTILQQSSGTIEINNISLTQ-TKQIRKMIGYLP 81
Cdd:TIGR03522 3 IRVSSLTKLY-GTQNALDEVSFEAQKGrIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQnPKEVQRNIGYLP 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 82 QDFDFYPNMKVKETLHYLGILSGIPKANLKINVAASLEKVNLVEHQNKKVKSLSGGMKKRLGIAQAIIHNPQVLIVDEPT 161
Cdd:TIGR03522 82 EHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPT 161
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 488422644 162 AGLDPEERVRLRHLLSNLAKDKIVIISTHIVSDIESTCENIAILDKGVIAYKGSIKNLIELSDNKVYEI 230
Cdd:TIGR03522 162 TGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELSAANKKQVIEV 230
|
|
| EcfA2 |
COG1122 |
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and ... |
4-221 |
1.04e-55 |
|
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and metabolism, General function prediction only];
Pssm-ID: 440739 [Multi-domain] Cd Length: 230 Bit Score: 179.45 E-value: 1.04e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 4 IVIKDVNKTYDGKTYALKNINLEIKNGMF-GILGRNGSGKSTLMNMLSTILQQSSGTIEINNISLTQT--KQIRKMIGYL 80
Cdd:COG1122 1 IELENLSFSYPGGTPALDDVSLSIEKGEFvAIIGPNGSGKSTLLRLLNGLLKPTSGEVLVDGKDITKKnlRELRRKVGLV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 81 PQDFD---FYP-----------NMkvketlhylgilsGIPKANLKINVAASLEKVNLVEHQNKKVKSLSGGMKKRLGIAQ 146
Cdd:COG1122 81 FQNPDdqlFAPtveedvafgpeNL-------------GLPREEIRERVEEALELVGLEHLADRPPHELSGGQKQRVAIAG 147
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 488422644 147 AIIHNPQVLIVDEPTAGLDPEERVRLRHLLSNLAKDKI-VIISTHIVSDIESTCENIAILDKGVIAYKGSIKNLIE 221
Cdd:COG1122 148 VLAMEPEVLVLDEPTAGLDPRGRRELLELLKRLNKEGKtVIIVTHDLDLVAELADRVIVLDDGRIVADGTPREVFS 223
|
|
| ABC_BcrA_bacitracin_resist |
cd03268 |
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily ... |
4-214 |
1.15e-55 |
|
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Pssm-ID: 213235 [Multi-domain] Cd Length: 208 Bit Score: 178.95 E-value: 1.15e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 4 IVIKDVNKTYDGKTyALKNINLEIKNG-MFGILGRNGSGKSTLMNMLSTILQQSSGTIEINNISLTQTKQIRKMIGYLPQ 82
Cdd:cd03268 1 LKTNDLTKTYGKKR-VLDDISLHVKKGeIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIGALIE 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 83 DFDFYPNMKVKETLHYLGILSGIPKANlkINVAasLEKVNLVEHQNKKVKSLSGGMKKRLGIAQAIIHNPQVLIVDEPTA 162
Cdd:cd03268 80 APGFYPNLTARENLRLLARLLGIRKKR--IDEV--LDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTN 155
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 488422644 163 GLDPEERVRLRHLLSNLAKDKI-VIISTHIVSDIESTCENIAILDKGVIAYKG 214
Cdd:cd03268 156 GLDPDGIKELRELILSLRDQGItVLISSHLLSEIQKVADRIGIINKGKLIEEG 208
|
|
| drrA |
TIGR01188 |
daunorubicin resistance ABC transporter ATP-binding subunit; This model describes daunorubicin ... |
11-244 |
6.88e-52 |
|
daunorubicin resistance ABC transporter ATP-binding subunit; This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. [Transport and binding proteins, Other]
Pssm-ID: 130256 [Multi-domain] Cd Length: 302 Bit Score: 172.19 E-value: 6.88e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 11 KTYdGKTYALKNINLEIKNG-MFGILGRNGSGKSTLMNMLSTILQQSSGTIEINNISLT-QTKQIRKMIGYLPQDFDFYP 88
Cdd:TIGR01188 1 KVY-GDFKAVDGVNFKVREGeVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVrEPRKVRRSIGIVPQYASVDE 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 89 NMKVKETLHYLGILSGIPKANLKINVAASLEKVNLVEHQNKKVKSLSGGMKKRLGIAQAIIHNPQVLIVDEPTAGLDPEE 168
Cdd:TIGR01188 80 DLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRT 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 488422644 169 RVRLRHLLSNLAKDKI-VIISTHIVSDIESTCENIAILDKGVIAYKGSIKNLIELSDNKVyeITISPSKLNQLKKNN 244
Cdd:TIGR01188 160 RRAIWDYIRALKEEGVtILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKRRLGKDT--LESRPRDIQSLKVEV 234
|
|
| ABC_DrrA |
cd03265 |
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein ... |
4-219 |
1.05e-51 |
|
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213232 [Multi-domain] Cd Length: 220 Bit Score: 169.09 E-value: 1.05e-51
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 4 IVIKDVNKTYDGkTYALKNINLEIKNG-MFGILGRNGSGKSTLMNMLSTILQQSSGTIEINNISLT-QTKQIRKMIGYLP 81
Cdd:cd03265 1 IEVENLVKKYGD-FEAVRGVSFRVRRGeIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVrEPREVRRRIGIVF 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 82 QDFDFYPNMKVKETLHYLGILSGIPKANLKINVAASLEKVNLVEHQNKKVKSLSGGMKKRLGIAQAIIHNPQVLIVDEPT 161
Cdd:cd03265 80 QDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPT 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 162 AGLDPEERVRLRHLLSNLAK--DKIVIISTHIVSDIESTCENIAILDKGVIAYKGSIKNL 219
Cdd:cd03265 160 IGLDPQTRAHVWEYIEKLKEefGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219
|
|
| ABC_putative_ATPase |
cd03269 |
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the ... |
6-214 |
3.85e-51 |
|
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213236 [Multi-domain] Cd Length: 210 Bit Score: 167.46 E-value: 3.85e-51
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 6 IKDVNKTYdGKTYALKNINLEIKNG-MFGILGRNGSGKSTLMNMLSTILQQSSGTIEINNISLTQTKQIRkmIGYLPQDF 84
Cdd:cd03269 3 VENVTKRF-GRVTALDDISFSVEKGeIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNR--IGYLPEER 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 85 DFYPNMKVKETLHYLGILSGIPKANLKINVAASLEKVNLVEHQNKKVKSLSGGMKKRLGIAQAIIHNPQVLIVDEPTAGL 164
Cdd:cd03269 80 GLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGL 159
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 488422644 165 DPEERVRLRHLLSNLA-KDKIVIISTHIVSDIESTCENIAILDKGVIAYKG 214
Cdd:cd03269 160 DPVNVELLKDVIRELArAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210
|
|
| ABC_cobalt_CbiO_domain1 |
cd03225 |
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ... |
5-208 |
1.74e-49 |
|
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213192 [Multi-domain] Cd Length: 211 Bit Score: 163.02 E-value: 1.74e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 5 VIKDVNKTY-DGKTYALKNINLEIKNGMF-GILGRNGSGKSTLMNMLSTILQQSSGTIEINNISLTQT--KQIRKMIGYL 80
Cdd:cd03225 1 ELKNLSFSYpDGARPALDDISLTIKKGEFvLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLslKELRRKVGLV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 81 PQDFD---FYPNmkVKETLHYLGILSGIPKANLKINVAASLEKVNLVEHQNKKVKSLSGGMKKRLGIAQAIIHNPQVLIV 157
Cdd:cd03225 81 FQNPDdqfFGPT--VEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLL 158
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 488422644 158 DEPTAGLDPEERVRLRHLLSNLAKDKI-VIISTHIVSDIESTCENIAILDKG 208
Cdd:cd03225 159 DEPTAGLDPAGRRELLELLKKLKAEGKtIIIVTHDLDLLLELADRVIVLEDG 210
|
|
| ABC_MJ0796_LolCDE_FtsE |
cd03255 |
ATP-binding cassette domain of the transporters involved in export of lipoprotein and ... |
4-210 |
3.58e-49 |
|
ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and Cell division ATP-binding protein FtsE; This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Pssm-ID: 213222 [Multi-domain] Cd Length: 218 Bit Score: 162.27 E-value: 3.58e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 4 IVIKDVNKTY---DGKTYALKNINLEIKNGMF-GILGRNGSGKSTLMNMLSTILQQSSGTIEINNISLTQ------TKQI 73
Cdd:cd03255 1 IELKNLSKTYgggGEKVQALKGVSLSIEKGEFvAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKlsekelAAFR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 74 RKMIGYLPQDFDFYPNMKVKETLHYLGILSGIPKANLKINVAASLEKVNLVEHQNKKVKSLSGGMKKRLGIAQAIIHNPQ 153
Cdd:cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPK 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 488422644 154 VLIVDEPTAGLDPEERVRLRHLLSNLAKD--KIVIISTHIVsDIESTCENIAILDKGVI 210
Cdd:cd03255 161 IILADEPTGNLDSETGKEVMELLRELNKEagTTIVVVTHDP-ELAEYADRIIELRDGKI 218
|
|
| ABC_Carb_Solutes_like |
cd03259 |
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is ... |
4-211 |
1.73e-48 |
|
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213226 [Multi-domain] Cd Length: 213 Bit Score: 160.38 E-value: 1.73e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 4 IVIKDVNKTYdGKTYALKNINLEIKNG-MFGILGRNGSGKSTLMNMLSTILQQSSGTIEINNISLTQTKQIRKMIGYLPQ 82
Cdd:cd03259 1 LELKGLSKTY-GSVRALDDLSLTVEPGeFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMVFQ 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 83 DFDFYPNMKVKETLHYLGILSGIPKANLKINVAASLEKVNLVEHQNKKVKSLSGGMKKRLGIAQAIIHNPQVLIVDEPTA 162
Cdd:cd03259 80 DYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLS 159
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 488422644 163 GLDPEERVRLRHLLSNLAK--DKIVIISTHIVSDIESTCENIAILDKGVIA 211
Cdd:cd03259 160 ALDAKLREELREELKELQRelGITTIYVTHDQEEALALADRIAVMNEGRIV 210
|
|
| ZnuC |
COG1121 |
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
4-212 |
1.34e-47 |
|
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440738 [Multi-domain] Cd Length: 245 Bit Score: 159.10 E-value: 1.34e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 4 IVIKDVNKTYDGKTyALKNINLEIKNG-MFGILGRNGSGKSTLMNMLSTILQQSSGTIEINNISLtqtKQIRKMIGYLPQ 82
Cdd:COG1121 7 IELENLTVSYGGRP-VLEDVSLTIPPGeFVAIVGPNGAGKSTLLKAILGLLPPTSGTVRLFGKPP---RRARRRIGYVPQ 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 83 DFDFYPN--MKVKET-----LHYLGILSGIPKANLKInVAASLEKVNLVEHQNKKVKSLSGGMKKRLGIAQAIIHNPQVL 155
Cdd:COG1121 83 RAEVDWDfpITVRDVvlmgrYGRRGLFRRPSRADREA-VDEALERVGLEDLADRPIGELSGGQQQRVLLARALAQDPDLL 161
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 488422644 156 IVDEPTAGLDPEERVRLRHLLSNLAKDKI-VIISTHIVSDIESTCENIAILDKGVIAY 212
Cdd:COG1121 162 LLDEPFAGVDAATEEALYELLRELRREGKtILVVTHDLGAVREYFDRVLLLNRGLVAH 219
|
|
| FepC |
COG1120 |
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion ... |
4-215 |
3.34e-47 |
|
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion transport and metabolism, Coenzyme transport and metabolism];
Pssm-ID: 440737 [Multi-domain] Cd Length: 254 Bit Score: 158.67 E-value: 3.34e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 4 IVIKDVNKTYDGKTyALKNINLEIKNGMF-GILGRNGSGKSTLMNMLSTILQQSSGTIEINNISLTQ--TKQIRKMIGYL 80
Cdd:COG1120 2 LEAENLSVGYGGRP-VLDDVSLSLPPGEVtALLGPNGSGKSTLLRALAGLLKPSSGEVLLDGRDLASlsRRELARRIAYV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 81 PQDFDFYPNMKVKET-----LHYLGILSGIPKANLKInVAASLEKVNLVEHQNKKVKSLSGGMKKRLGIAQAIIHNPQVL 155
Cdd:COG1120 81 PQEPPAPFGLTVRELvalgrYPHLGLFGRPSAEDREA-VEEALERTGLEHLADRPVDELSGGERQRVLIARALAQEPPLL 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 488422644 156 IVDEPTAGLDPEERVRLRHLLSNLAKD--KIVIISTHivsDIE---STCENIAILDKGVIAYKGS 215
Cdd:COG1120 160 LLDEPTSHLDLAHQLEVLELLRRLARErgRTVVMVLH---DLNlaaRYADRLVLLKDGRIVAQGP 221
|
|
| LolD |
COG1136 |
ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis]; |
1-190 |
2.01e-46 |
|
ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440751 [Multi-domain] Cd Length: 227 Bit Score: 155.59 E-value: 2.01e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 1 MNNIV-IKDVNKTY---DGKTYALKNINLEIKNGMF-GILGRNGSGKSTLMNMLSTILQQSSGTIEINNISLTQTKQI-- 73
Cdd:COG1136 1 MSPLLeLRNLTKSYgtgEGEVTALRGVSLSIEAGEFvAIVGPSGSGKSTLLNILGGLDRPTSGEVLIDGQDISSLSERel 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 74 ----RKMIGYLPQDFDFYPNMKVKETLHYLGILSGIPKANLKINVAASLEKVNLVEHQNKKVKSLSGGMKKRLGIAQAII 149
Cdd:COG1136 81 arlrRRHIGFVFQFFNLLPELTALENVALPLLLAGVSRKERRERARELLERVGLGDRLDHRPSQLSGGQQQRVAIARALV 160
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 488422644 150 HNPQVLIVDEPTAGLDPEERVRLRHLLSNLAKD--KIVIISTH 190
Cdd:COG1136 161 NRPKLILADEPTGNLDSKTGEEVLELLRELNRElgTTIVMVTH 203
|
|
| ABC_Metallic_Cations |
cd03235 |
ATP-binding cassette domain of the metal-type transporters; This family includes transporters ... |
6-212 |
4.48e-46 |
|
ATP-binding cassette domain of the metal-type transporters; This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Pssm-ID: 213202 [Multi-domain] Cd Length: 213 Bit Score: 154.23 E-value: 4.48e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 6 IKDVNKTYDGKTyALKNINLEIKNGMF-GILGRNGSGKSTLMNMLSTILQQSSGTIEINNISLTQTkqiRKMIGYLPQ-- 82
Cdd:cd03235 2 VEDLTVSYGGHP-VLEDVSFEVKPGEFlAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKE---RKRIGYVPQrr 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 83 DFDFYPNMKVKET-----LHYLGILSGIPKANLKInVAASLEKVNLVEHQNKKVKSLSGGMKKRLGIAQAIIHNPQVLIV 157
Cdd:cd03235 78 SIDRDFPISVRDVvlmglYGHKGLFRRLSKADKAK-VDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLL 156
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 488422644 158 DEPTAGLDPEERVRLRHLLSNL-AKDKIVIISTHivsDIEST---CENIAILDKGVIAY 212
Cdd:cd03235 157 DEPFAGVDPKTQEDIYELLRELrREGMTILVVTH---DLGLVleyFDRVLLLNRTVVAS 212
|
|
| ABC_NatA_sodium_exporter |
cd03266 |
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a ... |
4-214 |
5.34e-46 |
|
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein.
Pssm-ID: 213233 [Multi-domain] Cd Length: 218 Bit Score: 154.45 E-value: 5.34e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 4 IVIKDVNKTYD---GKTYALKNINLEIKNG-MFGILGRNGSGKSTLMNMLSTILQQSSGTIEINNISLTQTK-QIRKMIG 78
Cdd:cd03266 2 ITADALTKRFRdvkKTVQAVDGVSFTVKPGeVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPaEARRRLG 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 79 YLPQDFDFYPNMKVKETLHYLGILSGIPKANLKINVAASLEKVNLVEHQNKKVKSLSGGMKKRLGIAQAIIHNPQVLIVD 158
Cdd:cd03266 82 FVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLD 161
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 488422644 159 EPTAGLDPEERVRLRHLLSNL-AKDKIVIISTHIVSDIESTCENIAILDKGVIAYKG 214
Cdd:cd03266 162 EPTTGLDVMATRALREFIRQLrALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218
|
|
| PhnC |
COG3638 |
ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and ... |
4-230 |
6.83e-46 |
|
ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 442855 [Multi-domain] Cd Length: 249 Bit Score: 154.83 E-value: 6.83e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 4 IVIKDVNKTYDGKTYALKNINLEIKNGMF-GILGRNGSGKSTLMNMLSTILQQSSGTIEINNISLTQ--TKQIRKM---I 77
Cdd:COG3638 3 LELRNLSKRYPGGTPALDDVSLEIERGEFvALIGPSGAGKSTLLRCLNGLVEPTSGEILVDGQDVTAlrGRALRRLrrrI 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 78 GYLPQDFDFYPNMKVKE-----TLHYLG----ILSGIPKAnLKINVAASLEKVNLVEHQNKKVKSLSGGMKKRLGIAQAI 148
Cdd:COG3638 83 GMIFQQFNLVPRLSVLTnvlagRLGRTStwrsLLGLFPPE-DRERALEALERVGLADKAYQRADQLSGGQQQRVAIARAL 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 149 IHNPQVLIVDEPTAGLDPE--ERVrLRhLLSNLAK-DKI-VIISTHIVSDIESTCENIAILDKGVIAYKGSIKnliELSD 224
Cdd:COG3638 162 VQEPKLILADEPVASLDPKtaRQV-MD-LLRRIAReDGItVVVNLHQVDLARRYADRIIGLRDGRVVFDGPPA---ELTD 236
|
....*.
gi 488422644 225 NKVYEI 230
Cdd:COG3638 237 AVLREI 242
|
|
| MlaF |
COG1127 |
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall ... |
4-225 |
1.06e-45 |
|
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440744 [Multi-domain] Cd Length: 241 Bit Score: 154.37 E-value: 1.06e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 4 IVIKDVNKTYDGKTyALKNINLEIKNG-MFGILGRNGSGKSTLMNMLSTILQQSSGTI-----EINNISLTQTKQIRKMI 77
Cdd:COG1127 6 IEVRNLTKSFGDRV-VLDGVSLDVPRGeILAIIGGSGSGKSVLLKLIIGLLRPDSGEIlvdgqDITGLSEKELYELRRRI 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 78 GYLPQD---FDfypNMKVKETLHY-LGILSGIPKANLKINVAASLEKVNLVEHQNKKVKSLSGGMKKRLGIAQAIIHNPQ 153
Cdd:COG1127 85 GMLFQGgalFD---SLTVFENVAFpLREHTDLSEAEIRELVLEKLELVGLPGAADKMPSELSGGMRKRVALARALALDPE 161
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 488422644 154 VLIVDEPTAGLDPEERVRLRHLLSNLaKDKI---VIISTHIVSDIESTCENIAILDKGVIAYKGSIKNLIElSDN 225
Cdd:COG1127 162 ILLYDEPTAGLDPITSAVIDELIREL-RDELgltSVVVTHDLDSAFAIADRVAVLADGKIIAEGTPEELLA-SDD 234
|
|
| FtsE |
COG2884 |
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning]; |
4-190 |
2.51e-44 |
|
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442130 [Multi-domain] Cd Length: 223 Bit Score: 150.20 E-value: 2.51e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 4 IVIKDVNKTYDGKTYALKNINLEIKNGMFGIL-GRNGSGKSTLMNMLSTILQQSSGTIEINNISLTQTK-----QIRKMI 77
Cdd:COG2884 2 IRFENVSKRYPGGREALSDVSLEIEKGEFVFLtGPSGAGKSTLLKLLYGEERPTSGQVLVNGQDLSRLKrreipYLRRRI 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 78 GYLPQDFDFYPNMKVKETLHYLGILSGIPKANLKINVAASLEKVNLVEHQNKKVKSLSGGMKKRLGIAQAIIHNPQVLIV 157
Cdd:COG2884 82 GVVFQDFRLLPDRTVYENVALPLRVTGKSRKEIRRRVREVLDLVGLSDKAKALPHELSGGEQQRVAIARALVNRPELLLA 161
|
170 180 190
....*....|....*....|....*....|....
gi 488422644 158 DEPTAGLDPEERVRLRHLLSNLAKDKI-VIISTH 190
Cdd:COG2884 162 DEPTGNLDPETSWEIMELLEEINRRGTtVLIATH 195
|
|
| ABC_PhnC_transporter |
cd03256 |
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; ... |
4-228 |
3.01e-44 |
|
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213223 [Multi-domain] Cd Length: 241 Bit Score: 150.41 E-value: 3.01e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 4 IVIKDVNKTYDGKTYALKNINLEIKNG-MFGILGRNGSGKSTLMNMLSTILQQSSGTIEINNISLTQTK-----QIRKMI 77
Cdd:cd03256 1 IEVENLSKTYPNGKKALKDVSLSINPGeFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKgkalrQLRRQI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 78 GYLPQDFDFYPNMKVKE--------TLHYLGILSGIPKANLKINVAASLEKVNLVEHQNKKVKSLSGGMKKRLGIAQAII 149
Cdd:cd03256 81 GMIFQQFNLIERLSVLEnvlsgrlgRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARALM 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 150 HNPQVLIVDEPTAGLDPEERVRLRHLLSNLAKDK--IVIISTHIVSDIESTCENIAILDKGVIAYKGSIKNLIELSDNKV 227
Cdd:cd03256 161 QQPKLILADEPVASLDPASSRQVMDLLKRINREEgiTVIVSLHQVDLAREYADRIVGLKDGRIVFDGPPAELTDEVLDEI 240
|
.
gi 488422644 228 Y 228
Cdd:cd03256 241 Y 241
|
|
| CcmA |
COG4133 |
ABC-type transport system involved in cytochrome c biogenesis, ATPase component ... |
4-198 |
2.82e-42 |
|
ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443308 [Multi-domain] Cd Length: 206 Bit Score: 144.16 E-value: 2.82e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 4 IVIKDVNKTYDGKTyALKNINLEIKNG-MFGILGRNGSGKSTLMNMLSTILQQSSGTIEINNISLTQTK-QIRKMIGYLP 81
Cdd:COG4133 3 LEAENLSCRRGERL-LFSGLSFTLAAGeALALTGPNGSGKTTLLRILAGLLPPSAGEVLWNGEPIRDAReDYRRRLAYLG 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 82 QDFDFYPNMKVKETLHYLGILSGIPKANLKINVAasLEKVNLVEHQNKKVKSLSGGMKKRLGIAQAIIHNPQVLIVDEPT 161
Cdd:COG4133 82 HADGLKPELTVRENLRFWAALYGLRADREAIDEA--LEAVGLAGLADLPVRQLSAGQKRRVALARLLLSPAPLWLLDEPF 159
|
170 180 190
....*....|....*....|....*....|....*...
gi 488422644 162 AGLDPEERVRLRHLLSN-LAKDKIVIISTHIVSDIEST 198
Cdd:COG4133 160 TALDAAGVALLAELIAAhLARGGAVLLTTHQPLELAAA 197
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
4-221 |
3.40e-42 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 151.59 E-value: 3.40e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 4 IVIKDVNKTYD----GKTYALKNINLEIKNG-MFGILGRNGSGKSTLMNMLSTILQQSSGTIEINNISLT-----QTKQI 73
Cdd:COG1123 261 LEVRNLSKRYPvrgkGGVRAVDDVSLTLRRGeTLGLVGESGSGKSTLARLLLGLLRPTSGSILFDGKDLTklsrrSLREL 340
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 74 RKMIGYLPQD----FDfyPNMKVKETLHY-LGILSGIPKANLKINVAASLEKVNLV-EHQNKKVKSLSGGMKKRLGIAQA 147
Cdd:COG1123 341 RRRVQMVFQDpyssLN--PRMTVGDIIAEpLRLHGLLSRAERRERVAELLERVGLPpDLADRYPHELSGGQRQRVAIARA 418
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 488422644 148 IIHNPQVLIVDEPTAGLDPEERVRLRHLLSNLAKDK---IVIIsTHIVSDIESTCENIAILDKGVIAYKGSIKNLIE 221
Cdd:COG1123 419 LALEPKLLILDEPTSALDVSVQAQILNLLRDLQRELgltYLFI-SHDLAVVRYIADRVAVMYDGRIVEDGPTEEVFA 494
|
|
| ABC_MetN_methionine_transporter |
cd03258 |
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ... |
4-220 |
5.62e-42 |
|
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213225 [Multi-domain] Cd Length: 233 Bit Score: 144.26 E-value: 5.62e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 4 IVIKDVNKTYD---GKTYALKNINLEIKNG-MFGILGRNGSGKSTLMNMLSTILQQSSGTIEINNISLTQTK-----QIR 74
Cdd:cd03258 2 IELKNVSKVFGdtgGKVTALKDVSLSVPKGeIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSgkelrKAR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 75 KMIGYLPQDFDFYPNMKVKETLHYLGILSGIPKANLKINVAASLEKVNLVEHQNKKVKSLSGGMKKRLGIAQAIIHNPQV 154
Cdd:cd03258 82 RRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKV 161
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 488422644 155 LIVDEPTAGLDPEERVRLRHLLSNLAKD---KIVIIsTHIVSDIESTCENIAILDKGVIAYKGSIKNLI 220
Cdd:cd03258 162 LLCDEATSALDPETTQSILALLRDINRElglTIVLI-THEMEVVKRICDRVAVMEKGEVVEEGTVEEVF 229
|
|
| galliderm_ABC |
TIGR03740 |
gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit; Model TIGR03731 ... |
4-222 |
1.10e-41 |
|
gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit; Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Pssm-ID: 163452 [Multi-domain] Cd Length: 223 Bit Score: 143.31 E-value: 1.10e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 4 IVIKDVNKTYdGKTYALKNINLEI-KNGMFGILGRNGSGKSTLMNMLSTILQQSSGTIEINNISLTQtKQIRKmIGYLPQ 82
Cdd:TIGR03740 1 LETKNLSKRF-GKQTAVNNISLTVpKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTR-KDLHK-IGSLIE 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 83 DFDFYPNMKVKETLHYLGILSGIPKANLKinvaASLEKVNLVEHQNKKVKSLSGGMKKRLGIAQAIIHNPQVLIVDEPTA 162
Cdd:TIGR03740 78 SPPLYENLTARENLKVHTTLLGLPDSRID----EVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTN 153
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 488422644 163 GLDPEERVRLRHLLSNLAKDKI-VIISTHIVSDIESTCENIAILDKGVIAYKGSIK---NLIEL 222
Cdd:TIGR03740 154 GLDPIGIQELRELIRSFPEQGItVILSSHILSEVQQLADHIGIISEGVLGYQGKINkseNLEKL 217
|
|
| ABC_ATPase |
cd00267 |
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large ... |
6-208 |
4.61e-41 |
|
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213179 [Multi-domain] Cd Length: 157 Bit Score: 139.69 E-value: 4.61e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 6 IKDVNKTYDGKTyALKNINLEIKNG-MFGILGRNGSGKSTLMNMLSTILQQSSGTIEINNISLTQ--TKQIRKMIGYLPQ 82
Cdd:cd00267 2 IENLSFRYGGRT-ALDNVSLTLKAGeIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKlpLEELRRRIGYVPQ 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 83 dfdfypnmkvketlhylgilsgipkanlkinvaaslekvnlvehqnkkvksLSGGMKKRLGIAQAIIHNPQVLIVDEPTA 162
Cdd:cd00267 81 ---------------------------------------------------LSGGQRQRVALARALLLNPDLLLLDEPTS 109
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 488422644 163 GLDPEERVRLRHLLSNLAKD-KIVIISTHIVSDIESTCENIAILDKG 208
Cdd:cd00267 110 GLDPASRERLLELLRELAEEgRTVIIVTHDPELAELAADRVIVLKDG 156
|
|
| ABCC_MRP_Like |
cd03228 |
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP ... |
4-208 |
4.96e-41 |
|
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213195 [Multi-domain] Cd Length: 171 Bit Score: 139.83 E-value: 4.96e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 4 IVIKDVNKTYDGK-TYALKNINLEIKNGMF-GILGRNGSGKSTLMNMLSTILQQSSGTIEINNISLTQ--TKQIRKMIGY 79
Cdd:cd03228 1 IEFKNVSFSYPGRpKPVLKDVSLTIKPGEKvAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDldLESLRKNIAY 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 80 LPQDFDFYpNMKVKEtlhylgilsgipkaNLkinvaaslekvnlvehqnkkvksLSGGMKKRLGIAQAIIHNPQVLIVDE 159
Cdd:cd03228 81 VPQDPFLF-SGTIRE--------------NI-----------------------LSGGQRQRIAIARALLRDPPILILDE 122
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 488422644 160 PTAGLDPEERVRLRHLLSNLAKDKIVIISTHIVSDIEStCENIAILDKG 208
Cdd:cd03228 123 ATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRD-ADRIIVLDDG 170
|
|
| ABC_Class3 |
cd03229 |
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is ... |
4-208 |
7.54e-41 |
|
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213196 [Multi-domain] Cd Length: 178 Bit Score: 139.63 E-value: 7.54e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 4 IVIKDVNKTYDGKTyALKNINLEIKNG-MFGILGRNGSGKSTLMNMLSTILQQSSGTIEINNISLT----QTKQIRKMIG 78
Cdd:cd03229 1 LELKNVSKRYGQKT-VLNDVSLNIEAGeIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTdledELPPLRRRIG 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 79 YLPQDFDFYPNMKVKETLHYLgilsgipkanlkinvaaslekvnlvehqnkkvksLSGGMKKRLGIAQAIIHNPQVLIVD 158
Cdd:cd03229 80 MVFQDFALFPHLTVLENIALG----------------------------------LSGGQQQRVALARALAMDPDVLLLD 125
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 488422644 159 EPTAGLDPEERVRLRHLLSNL-AKDKI-VIISTHIVSDIESTCENIAILDKG 208
Cdd:cd03229 126 EPTSALDPITRREVRALLKSLqAQLGItVVLVTHDLDEAARLADRVVVLRDG 177
|
|
| ABC_phnC |
TIGR02315 |
phosphonate ABC transporter, ATP-binding protein; Phosphonates are a class of ... |
4-228 |
7.76e-41 |
|
phosphonate ABC transporter, ATP-binding protein; Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. [Transport and binding proteins, Anions]
Pssm-ID: 131368 [Multi-domain] Cd Length: 243 Bit Score: 141.67 E-value: 7.76e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 4 IVIKDVNKTYDGKTYALKNINLEIKNGMF-GILGRNGSGKSTLMNMLSTILQQSSGTIEINNISLTQTK-----QIRKMI 77
Cdd:TIGR02315 2 LEVENLSKVYPNGKQALKNINLNINPGEFvAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRgkklrKLRRRI 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 78 GYLPQDFDFYPNMKVKET-LH--------YLGILSGIPKANlKINVAASLEKVNLVEHQNKKVKSLSGGMKKRLGIAQAI 148
Cdd:TIGR02315 82 GMIFQHYNLIERLTVLENvLHgrlgykptWRSLLGRFSEED-KERALSALERVGLADKAYQRADQLSGGQQQRVAIARAL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 149 IHNPQVLIVDEPTAGLDPEERVRLRHLLSNLAKDK--IVIISTHIVSDIESTCENIAILDKGVIAYKGSIKNLIELSDNK 226
Cdd:TIGR02315 161 AQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDgiTVIINLHQVDLAKKYADRIVGLKAGEIVFDGAPSELDDEVLRH 240
|
..
gi 488422644 227 VY 228
Cdd:TIGR02315 241 IY 242
|
|
| ECF_ATPase_2 |
TIGR04521 |
energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette ... |
4-215 |
1.76e-40 |
|
energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette (ABC) proteins by homology, but belong to energy coupling factor (ECF) transport systems. The architecture in general is two ATPase subunits (or a double-length fusion protein), a T component, and a substrate capture (S) component that is highly variable, and may be interchangeable in genomes with only one T component. This model identifies many but not examples of the downstream member of the pair of ECF ATPases in Firmicutes and Mollicutes. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 275314 [Multi-domain] Cd Length: 277 Bit Score: 141.82 E-value: 1.76e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 4 IVIKDVNKTYDGKT----YALKNINLEIKNGMF-GILGRNGSGKSTLMNMLSTILQQSSGTIEINNISLTQT-----KQI 73
Cdd:TIGR04521 1 IKLKNVSYIYQPGTpfekKALDDVSLTIEDGEFvAIIGHTGSGKSTLIQHLNGLLKPTSGTVTIDGRDITAKkkkklKDL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 74 RKMIGYLPQ-------------DFDFYP-NMkvketlhylgilsGIPKANLKINVAASLEKVNLVEHQnkKVKS---LSG 136
Cdd:TIGR04521 81 RKKVGLVFQfpehqlfeetvykDIAFGPkNL-------------GLSEEEAEERVKEALELVGLDEEY--LERSpfeLSG 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 137 GMKKRLGIAQAIIHNPQVLIVDEPTAGLDPEERVRLRHLLSNLAK--DKIVIISTHIVSDIESTCENIAILDKGVIAYKG 214
Cdd:TIGR04521 146 GQMRRVAIAGVLAMEPEVLILDEPTAGLDPKGRKEILDLFKRLHKekGLTVILVTHSMEDVAEYADRVIVMHKGKIVLDG 225
|
.
gi 488422644 215 S 215
Cdd:TIGR04521 226 T 226
|
|
| TauB |
COG1116 |
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion ... |
4-196 |
2.87e-40 |
|
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440733 [Multi-domain] Cd Length: 260 Bit Score: 140.61 E-value: 2.87e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 4 IVIKDVNKTY---DGKTYALKNINLEIKNGMF-GILGRNGSGKSTLMNMLSTILQQSSGTIEINNISLTQTkqiRKMIGY 79
Cdd:COG1116 8 LELRGVSKRFptgGGGVTALDDVSLTVAAGEFvALVGPSGCGKSTLLRLIAGLEKPTSGEVLVDGKPVTGP---GPDRGV 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 80 LPQDFDFYPNMKVKETLhYLGI-LSGIPKANLKINVAASLEKVNLVEHQNKKVKSLSGGMKKRLGIAQAIIHNPQVLIVD 158
Cdd:COG1116 85 VFQEPALLPWLTVLDNV-ALGLeLRGVPKAERRERARELLELVGLAGFEDAYPHQLSGGMRQRVAIARALANDPEVLLMD 163
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 488422644 159 EPTAGLDPEERVRLRHLLSNL--AKDKIVIISTHivsDIE 196
Cdd:COG1116 164 EPFGALDALTRERLQDELLRLwqETGKTVLFVTH---DVD 200
|
|
| SunT |
COG2274 |
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase ... |
3-221 |
2.92e-40 |
|
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms];
Pssm-ID: 441875 [Multi-domain] Cd Length: 711 Bit Score: 148.44 E-value: 2.92e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 3 NIVIKDVNKTYDG-KTYALKNINLEIKNGMF-GILGRNGSGKSTLMNMLSTILQQSSGTIEINNISLTQ--TKQIRKMIG 78
Cdd:COG2274 473 DIELENVSFRYPGdSPPVLDNISLTIKPGERvAIVGRSGSGKSTLLKLLLGLYEPTSGRILIDGIDLRQidPASLRRQIG 552
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 79 YLPQDFDFYP-----NmkvketlhylgILSGIPKANLKiNVAASLEKVNL---VEHQ----NKKV----KSLSGGMKKRL 142
Cdd:COG2274 553 VVLQDVFLFSgtireN-----------ITLGDPDATDE-EIIEAARLAGLhdfIEALpmgyDTVVgeggSNLSGGQRQRL 620
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 488422644 143 GIAQAIIHNPQVLIVDEPTAGLDPEERVRLRHLLSNLAKDKIVIISTHIVSDIEStCENIAILDKGVIAYKGSIKNLIE 221
Cdd:COG2274 621 AIARALLRNPRILILDEATSALDAETEAIILENLRRLLKGRTVIIIAHRLSTIRL-ADRIIVLDKGRIVEDGTHEELLA 698
|
|
| ABC_Org_Solvent_Resistant |
cd03261 |
ATP-binding cassette transport system involved in resistance to organic solvents; ABC ... |
4-225 |
4.41e-40 |
|
ATP-binding cassette transport system involved in resistance to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213228 [Multi-domain] Cd Length: 235 Bit Score: 139.56 E-value: 4.41e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 4 IVIKDVNKTYDGKTyALKNINLEIKNG-MFGILGRNGSGKSTLMNMLSTILQQSSGTIEINNI-----SLTQTKQIRKMI 77
Cdd:cd03261 1 IELRGLTKSFGGRT-VLKGVDLDVRRGeILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEdisglSEAELYRLRRRM 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 78 GYLPQD---FDfypNMKVKET----LHYLGILsgiPKANLKINVAASLEKVNLVEHQNKKVKSLSGGMKKRLGIAQAIIH 150
Cdd:cd03261 80 GMLFQSgalFD---SLTVFENvafpLREHTRL---SEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALAL 153
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 488422644 151 NPQVLIVDEPTAGLDPEERVRLRHLLSNL--AKDKIVIISTHIVSDIESTCENIAILDKGVIAYKGSIKNLIElSDN 225
Cdd:cd03261 154 DPELLLYDEPTAGLDPIASGVIDDLIRSLkkELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRA-SDD 229
|
|
| ABCG_White |
cd03234 |
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ... |
20-214 |
1.52e-39 |
|
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners.
Pssm-ID: 213201 [Multi-domain] Cd Length: 226 Bit Score: 137.79 E-value: 1.52e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 20 LKNINLEIKNG-MFGILGRNGSGKSTLMNMLSTILQQS---SGTIEINNISLTQtKQIRKMIGYLPQDFDFYPNMKVKET 95
Cdd:cd03234 23 LNDVSLHVESGqVMAILGSSGSGKTTLLDAISGRVEGGgttSGQILFNGQPRKP-DQFQKCVAYVRQDDILLPGLTVRET 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 96 LHYLGILSG---IPKANLKINVAASLEK-VNLVEHQNKKVKSLSGGMKKRLGIAQAIIHNPQVLIVDEPTAGLDPEERVR 171
Cdd:cd03234 102 LTYTAILRLprkSSDAIRKKRVEDVLLRdLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALN 181
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 488422644 172 LRHLLSNLAK-DKIVIISTHI-VSDIESTCENIAILDKGVIAYKG 214
Cdd:cd03234 182 LVSTLSQLARrNRIVILTIHQpRSDLFRLFDRILLLSSGEIVYSG 226
|
|
| ABC_Iron-Siderophores_B12_Hemin |
cd03214 |
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related ... |
6-214 |
1.15e-38 |
|
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins; ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Pssm-ID: 213181 [Multi-domain] Cd Length: 180 Bit Score: 134.10 E-value: 1.15e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 6 IKDVNKTYDGKTyALKNINLEIKNG-MFGILGRNGSGKSTLMNMLSTILQQSSGTIEINNISLTQ--TKQIRKMIGYLPQ 82
Cdd:cd03214 2 VENLSVGYGGRT-VLDDLSLSIEAGeIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASlsPKELARKIAYVPQ 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 83 dfdfypnmkvketlhylgilsgipkanlkinvaaSLEKVNLVEHQNKKVKSLSGGMKKRLGIAQAIIHNPQVLIVDEPTA 162
Cdd:cd03214 81 ----------------------------------ALELLGLAHLADRPFNELSGGERQRVLLARALAQEPPILLLDEPTS 126
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 488422644 163 GLDPEERVRLRHLLSNLAKD--KIVIISTHivsDIEST---CENIAILDKGVIAYKG 214
Cdd:cd03214 127 HLDIAHQIELLELLRRLARErgKTVVMVLH---DLNLAaryADRVILLKDGRIVAQG 180
|
|
| ABCG_EPDR |
cd03213 |
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette ... |
4-214 |
1.34e-38 |
|
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily; ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Pssm-ID: 213180 [Multi-domain] Cd Length: 194 Bit Score: 134.22 E-value: 1.34e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 4 IVIKDVNKTYDGKTYA-----LKNINLEIKNG-MFGILGRNGSGKSTLMNMLS--TILQQSSGTIEINNISLTQtKQIRK 75
Cdd:cd03213 4 LSFRNLTVTVKSSPSKsgkqlLKNVSGKAKPGeLTAIMGPSGAGKSTLLNALAgrRTGLGVSGEVLINGRPLDK-RSFRK 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 76 MIGYLPQDFDFYPNMKVKETLHYlgilsgipkanlkinvAASLekvnlvehqnkkvKSLSGGMKKRLGIAQAIIHNPQVL 155
Cdd:cd03213 83 IIGYVPQDDILHPTLTVRETLMF----------------AAKL-------------RGLSGGERKRVSIALELVSNPSLL 133
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 488422644 156 IVDEPTAGLDPEERVRLRHLLSNLAKD-KIVIISTHIVS-DIESTCENIAILDKGVIAYKG 214
Cdd:cd03213 134 FLDEPTSGLDSSSALQVMSLLRRLADTgRTIICSIHQPSsEIFELFDKLLLLSQGRVIYFG 194
|
|
| ABC_NikE_OppD_transporters |
cd03257 |
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter ... |
6-214 |
1.86e-38 |
|
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Pssm-ID: 213224 [Multi-domain] Cd Length: 228 Bit Score: 134.94 E-value: 1.86e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 6 IKDVNKTY---DGKTYALKNINLEIKNG-MFGILGRNGSGKSTLMNMLSTILQQSSGTI-----EINNISLTQTKQIRKM 76
Cdd:cd03257 4 VKNLSVSFptgGGSVKALDDVSFSIKKGeTLGLVGESGSGKSTLARAILGLLKPTSGSIifdgkDLLKLSRRLRKIRRKE 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 77 IGYLPQD----FDfyPNMKVK----ETLHYLGILSGipKANLKINVAASLEKVNLVE-HQNKKVKSLSGGMKKRLGIAQA 147
Cdd:cd03257 84 IQMVFQDpmssLN--PRMTIGeqiaEPLRIHGKLSK--KEARKEAVLLLLVGVGLPEeVLNRYPHELSGGQRQRVAIARA 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 148 IIHNPQVLIVDEPTAGLDPEERVRLRHLLSNLAKDK---IVIIsTHIVSDIESTCENIAILDKGVIAYKG 214
Cdd:cd03257 160 LALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELgltLLFI-THDLGVVAKIADRVAVMYAGKIVEEG 228
|
|
| ABC_tran |
pfam00005 |
ABC transporter; ABC transporters for a large family of proteins responsible for translocation ... |
20-162 |
1.87e-38 |
|
ABC transporter; ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide or belong in different polypeptide chains.
Pssm-ID: 394964 [Multi-domain] Cd Length: 150 Bit Score: 132.77 E-value: 1.87e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 20 LKNINLEIKNG-MFGILGRNGSGKSTLMNMLSTILQQSSGTIEINNISLTQT--KQIRKMIGYLPQDFDFYPNMKVKETL 96
Cdd:pfam00005 1 LKNVSLTLNPGeILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDLTDDerKSLRKEIGYVFQDPQLFPRLTVRENL 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 97 HYLGILSGIPKANLKINVAASLEKVNLV----EHQNKKVKSLSGGMKKRLGIAQAIIHNPQVLIVDEPTA 162
Cdd:pfam00005 81 RLGLLLKGLSKREKDARAEEALEKLGLGdladRPVGERPGTLSGGQRQRVAIARALLTKPKLLLLDEPTA 150
|
|
| ABC_NrtD_SsuB_transporters |
cd03293 |
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ... |
4-196 |
2.10e-38 |
|
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213260 [Multi-domain] Cd Length: 220 Bit Score: 134.52 E-value: 2.10e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 4 IVIKDVNKTYDGKTY---ALKNINLEIKNGMF-GILGRNGSGKSTLMNMLSTILQQSSGTIEINNISLTQTkqiRKMIGY 79
Cdd:cd03293 1 LEVRNVSKTYGGGGGavtALEDISLSVEEGEFvALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGP---GPDRGY 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 80 LPQDFDFYPNMKVKETLHyLGI-LSGIPKANLKINVAASLEKVNLVEHQNKKVKSLSGGMKKRLGIAQAIIHNPQVLIVD 158
Cdd:cd03293 78 VFQQDALLPWLTVLDNVA-LGLeLQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLD 156
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 488422644 159 EPTAGLDPEERVRLRHLLSNLAKD--KIVIISTHivsDIE 196
Cdd:cd03293 157 EPFSALDALTREQLQEELLDIWREtgKTVLLVTH---DID 193
|
|
| MalK |
COG3839 |
ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism]; ... |
1-210 |
2.23e-38 |
|
ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism];
Pssm-ID: 443050 [Multi-domain] Cd Length: 352 Bit Score: 138.28 E-value: 2.23e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 1 MNNIVIKDVNKTYdGKTYALKNINLEIKNGMF-GILGRNGSGKSTLMNMLSTILQQSSGTIEINNISLTQTKQIRKMIGY 79
Cdd:COG3839 1 MASLELENVSKSY-GGVEALKDIDLDIEDGEFlVLLGPSGCGKSTLLRMIAGLEDPTSGEILIGGRDVTDLPPKDRNIAM 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 80 LPQDFDFYPNMKVKETLHYlGI-LSGIPKANLKINVAASLEKVNLVEHQNKKVKSLSGGMKKRLGIAQAIIHNPQVLIVD 158
Cdd:COG3839 80 VFQSYALYPHMTVYENIAF-PLkLRKVPKAEIDRRVREAAELLGLEDLLDRKPKQLSGGQRQRVALGRALVREPKVFLLD 158
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 488422644 159 EPTAGLDPEERVRLRHLLSNLAKD--KIVIISTHivsD-IE--STCENIAILDKGVI 210
Cdd:COG3839 159 EPLSNLDAKLRVEMRAEIKRLHRRlgTTTIYVTH---DqVEamTLADRIAVMNDGRI 212
|
|
| ABC_HisP_GlnQ |
cd03262 |
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ... |
4-210 |
3.26e-38 |
|
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein.
Pssm-ID: 213229 [Multi-domain] Cd Length: 213 Bit Score: 133.81 E-value: 3.26e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 4 IVIKDVNKTYdGKTYALKNINLEIKNG-MFGILGRNGSGKSTL---MNMLSTIlqqSSGTIEINNISLTQTK----QIRK 75
Cdd:cd03262 1 IEIKNLHKSF-GDFHVLKGIDLTVKKGeVVVIIGPSGSGKSTLlrcINLLEEP---DSGTIIIDGLKLTDDKkninELRQ 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 76 MIGYLPQDFDFYPNMKVKETLHY-LGILSGIPKANLKINVAASLEKVNLVEHQNKKVKSLSGGMKKRLGIAQAIIHNPQV 154
Cdd:cd03262 77 KVGMVFQQFNLFPHLTVLENITLaPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKV 156
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 488422644 155 LIVDEPTAGLDPEERVRLRHLLSNLAKDKI-VIISTHIVSDIESTCENIAILDKGVI 210
Cdd:cd03262 157 MLFDEPTSALDPELVGEVLDVMKDLAEEGMtMVVVTHEMGFAREVADRVIFMDDGRI 213
|
|
| PRK13537 |
PRK13537 |
nodulation factor ABC transporter ATP-binding protein NodI; |
4-221 |
8.40e-38 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237420 [Multi-domain] Cd Length: 306 Bit Score: 135.70 E-value: 8.40e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 4 IVIKDVNKTYDGKTyALKNINLEIKNGM-FGILGRNGSGKSTLMNMLSTILQQSSGTIEINNISL-TQTKQIRKMIGYLP 81
Cdd:PRK13537 8 IDFRNVEKRYGDKL-VVDGLSFHVQRGEcFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVpSRARHARQRVGVVP 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 82 QDFDFYPNMKVKETLHYLGILSGIPKANLKINVAASLEKVNLVEHQNKKVKSLSGGMKKRLGIAQAIIHNPQVLIVDEPT 161
Cdd:PRK13537 87 QFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPT 166
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 488422644 162 AGLDPEER----VRLRHLlsnLAKDKIVIISTHIVSDIESTCENIAILDKGVIAYKGSIKNLIE 221
Cdd:PRK13537 167 TGLDPQARhlmwERLRSL---LARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIE 227
|
|
| CydC |
COG4987 |
ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease ... |
4-221 |
1.55e-37 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444011 [Multi-domain] Cd Length: 569 Bit Score: 139.52 E-value: 1.55e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 4 IVIKDVNKTYDG-KTYALKNINLEIKNG-MFGILGRNGSGKSTLMNMLSTILQQSSGTIEINNISLTQ--TKQIRKMIGY 79
Cdd:COG4987 334 LELEDVSFRYPGaGRPVLDGLSLTLPPGeRVAIVGPSGSGKSTLLALLLRFLDPQSGSITLGGVDLRDldEDDLRRRIAV 413
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 80 LPQD---FDfypnmkvkETLhylgilsgipKANLKI--------NVAASLEKVNL---VEHQNKKV--------KSLSGG 137
Cdd:COG4987 414 VPQRphlFD--------TTL----------RENLRLarpdatdeELWAALERVGLgdwLAALPDGLdtwlgeggRRLSGG 475
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 138 MKKRLGIAQAIIHNPQVLIVDEPTAGLDPEERVRLRHLLSNLAKDKIVIISTHIVSDIEStCENIAILDKGVIAYKGSIK 217
Cdd:COG4987 476 ERRRLALARALLRDAPILLLDEPTEGLDAATEQALLADLLEALAGRTVLLITHRLAGLER-MDRILVLEDGRIVEQGTHE 554
|
....
gi 488422644 218 NLIE 221
Cdd:COG4987 555 ELLA 558
|
|
| ABC_OpuCA_Osmoprotection |
cd03295 |
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding ... |
4-220 |
3.71e-37 |
|
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213262 [Multi-domain] Cd Length: 242 Bit Score: 132.04 E-value: 3.71e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 4 IVIKDVNKTYDGKTYALKNINLEIKNGMFGIL-GRNGSGKSTLMNMLSTILQQSSGTIEINNISLTQTK--QIRKMIGYL 80
Cdd:cd03295 1 IEFENVTKRYGGGKKAVNNLNLEIAKGEFLVLiGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDpvELRRKIGYV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 81 PQDFDFYPNMKVKETLHYLGILSGIPKANLKINVAASLEKVNL--VEHQNKKVKSLSGGMKKRLGIAQAIIHNPQVLIVD 158
Cdd:cd03295 81 IQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLdpAEFADRYPHELSGGQQQRVGVARALAADPPLLLMD 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 488422644 159 EPTAGLDPEERVRLRHLLSNLAKD--KIVIISTHivsDIEST---CENIAILDKGVIAYKGSIKNLI 220
Cdd:cd03295 161 EPFGALDPITRDQLQEEFKRLQQElgKTIVFVTH---DIDEAfrlADRIAIMKNGEIVQVGTPDEIL 224
|
|
| AbcC |
COG1135 |
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism]; |
4-265 |
1.07e-36 |
|
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440750 [Multi-domain] Cd Length: 339 Bit Score: 133.28 E-value: 1.07e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 4 IVIKDVNKTY---DGKTYALKNINLEIKNG-MFGILGRNGSGKSTLMNMLsTILQQ-SSGTIEINNISLTQTK-----QI 73
Cdd:COG1135 2 IELENLSKTFptkGGPVTALDDVSLTIEKGeIFGIIGYSGAGKSTLIRCI-NLLERpTSGSVLVDGVDLTALSerelrAA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 74 RKMIGYLPQDFDFYPNMKVKETLHYLGILSGIPKANLKINVAASLEKVNLVEHQNKKVKSLSGGMKKRLGIAQAIIHNPQ 153
Cdd:COG1135 81 RRKIGMIFQHFNLLSSRTVAENVALPLEIAGVPKAEIRKRVAELLELVGLSDKADAYPSQLSGGQKQRVGIARALANNPK 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 154 VLIVDEPTAGLDPE--ERVrLRhLLSNLAKD---KIVIIsTHIVSDIESTCENIAILDKGVIAYKGSI------------ 216
Cdd:COG1135 161 VLLCDEATSALDPEttRSI-LD-LLKDINRElglTIVLI-THEMDVVRRICDRVAVLENGRIVEQGPVldvfanpqselt 237
|
250 260 270 280
....*....|....*....|....*....|....*....|....*....
gi 488422644 217 KNLIELSDNkvyeITISPSKLNQLKKNNifitkiqEYEHLLKVRFVSES 265
Cdd:COG1135 238 RRFLPTVLN----DELPEELLARLREAA-------GGGRLVRLTFVGES 275
|
|
| PotA |
COG3842 |
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport ... |
1-211 |
1.31e-36 |
|
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443052 [Multi-domain] Cd Length: 353 Bit Score: 133.68 E-value: 1.31e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 1 MNNIVIKDVNKTYdGKTYALKNINLEIKNG-MFGILGRNGSGKSTLMNMLSTILQQSSGTIEINNISLTQTKQIRKMIGY 79
Cdd:COG3842 3 MPALELENVSKRY-GDVTALDDVSLSIEPGeFVALLGPSGCGKTTLLRMIAGFETPDSGRILLDGRDVTGLPPEKRNVGM 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 80 LPQDFDFYPNMKVKETLHY-LGILsGIPKANLKINVAASLEKVNLVEHQNKKVKSLSGGMKKRLGIAQAIIHNPQVLIVD 158
Cdd:COG3842 82 VFQDYALFPHLTVAENVAFgLRMR-GVPKAEIRARVAELLELVGLEGLADRYPHQLSGGQQQRVALARALAPEPRVLLLD 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 488422644 159 EPTAGLDPEERVRLRHLLSNLAKD-KI-VIISTH------IVSDiestceNIAILDKGVIA 211
Cdd:COG3842 161 EPLSALDAKLREEMREELRRLQRElGItFIYVTHdqeealALAD------RIAVMNDGRIE 215
|
|
| ABC_FtsE |
cd03292 |
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where ... |
4-210 |
2.11e-36 |
|
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages
Pssm-ID: 213259 [Multi-domain] Cd Length: 214 Bit Score: 129.45 E-value: 2.11e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 4 IVIKDVNKTYDGKTYALKNINLEIKNGMFGIL-GRNGSGKSTLMNMLSTILQQSSGTIEINNISLT-----QTKQIRKMI 77
Cdd:cd03292 1 IEFINVTKTYPNGTAALDGINISISAGEFVFLvGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSdlrgrAIPYLRRKI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 78 GYLPQDFDFYPNMKVKETLHYLGILSGIPKANLKINVAASLEKVNLVEHQNKKVKSLSGGMKKRLGIAQAIIHNPQVLIV 157
Cdd:cd03292 81 GVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIA 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 488422644 158 DEPTAGLDPEERVRLRHLL--SNLAKDKIViISTHIVSDIESTCENIAILDKGVI 210
Cdd:cd03292 161 DEPTGNLDPDTTWEIMNLLkkINKAGTTVV-VATHAKELVDTTRHRVIALERGKL 214
|
|
| ModF |
COG1119 |
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA ... |
4-220 |
3.89e-36 |
|
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA [Inorganic ion transport and metabolism];
Pssm-ID: 440736 [Multi-domain] Cd Length: 250 Bit Score: 129.82 E-value: 3.89e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 4 IVIKDVNKTYDGKTyALKNINLEIKNGMF-GILGRNGSGKSTLMNMLSTILQQSSG-TIEInnisLTQTK------QIRK 75
Cdd:COG1119 4 LELRNVTVRRGGKT-ILDDISWTVKPGEHwAILGPNGAGKSTLLSLITGDLPPTYGnDVRL----FGERRggedvwELRK 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 76 MIGYLPQDF--DFYPNMKVKETlhylgILSGI---------PKANLKINVAASLEKVNLVEHQNKKVKSLSGGMKKRLGI 144
Cdd:COG1119 79 RIGLVSPALqlRFPRDETVLDV-----VLSGFfdsiglyrePTDEQRERARELLELLGLAHLADRPFGTLSQGEQRRVLI 153
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 488422644 145 AQAIIHNPQVLIVDEPTAGLDPEERVRLRHLLSNLAKDK---IVIIsTHIVSDIESTCENIAILDKGVIAYKGSIKNLI 220
Cdd:COG1119 154 ARALVKDPELLILDEPTAGLDLGARELLLALLDKLAAEGaptLVLV-THHVEEIPPGITHVLLLKDGRVVAAGPKEEVL 231
|
|
| PRK13536 |
PRK13536 |
nodulation factor ABC transporter ATP-binding protein NodI; |
4-221 |
7.67e-36 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237419 [Multi-domain] Cd Length: 340 Bit Score: 131.11 E-value: 7.67e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 4 IVIKDVNKTYDGKTyALKNINLEIKNG-MFGILGRNGSGKSTLMNMLSTILQQSSGTIEINNISL-TQTKQIRKMIGYLP 81
Cdd:PRK13536 42 IDLAGVSKSYGDKA-VVNGLSFTVASGeCFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVpARARLARARIGVVP 120
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 82 QDFDFYPNMKVKETLHYLGILSGIPKANLKINVAASLEKVNLVEHQNKKVKSLSGGMKKRLGIAQAIIHNPQVLIVDEPT 161
Cdd:PRK13536 121 QFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILDEPT 200
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 488422644 162 AGLDPEER----VRLRHLlsnLAKDKIVIISTHIVSDIESTCENIAILDKGVIAYKGSIKNLIE 221
Cdd:PRK13536 201 TGLDPHARhliwERLRSL---LARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALID 261
|
|
| CydD |
COG4988 |
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease ... |
4-221 |
1.45e-35 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444012 [Multi-domain] Cd Length: 563 Bit Score: 134.12 E-value: 1.45e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 4 IVIKDVNKTYDGKTYALKNINLEIKNG-MFGILGRNGSGKSTLMNMLSTILQQSSGTIEINNISLTQ--TKQIRKMIGYL 80
Cdd:COG4988 337 IELEDVSFSYPGGRPALDGLSLTIPPGeRVALVGPSGAGKSTLLNLLLGFLPPYSGSILINGVDLSDldPASWRRQIAWV 416
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 81 PQDfdfyPnmkvketlhYLgiLSGIPKANLKIN--------VAASLEKVNL---VEHQNKKVKS--------LSGGMKKR 141
Cdd:COG4988 417 PQN----P---------YL--FAGTIRENLRLGrpdasdeeLEAALEAAGLdefVAALPDGLDTplgeggrgLSGGQAQR 481
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 142 LGIAQAIIHNPQVLIVDEPTAGLDPEERVRLRHLLSNLAKDKIVIISTHIVSDIEStCENIAILDKGVIAYKGSIKNLIE 221
Cdd:COG4988 482 LALARALLRDAPLLLLDEPTAHLDAETEAEILQALRRLAKGRTVILITHRLALLAQ-ADRILVLDDGRIVEQGTHEELLA 560
|
|
| ABC_NatA_like |
cd03267 |
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; ... |
19-214 |
3.22e-35 |
|
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein.
Pssm-ID: 213234 [Multi-domain] Cd Length: 236 Bit Score: 127.06 E-value: 3.22e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 19 ALKNINLEIKNG-MFGILGRNGSGKSTLMNMLSTILQQSSGTIEIN-NISLTQTKQIRKMIGY-LPQDFDFYPNMKVKET 95
Cdd:cd03267 36 ALKGISFTIEKGeIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAgLVPWKRRKKFLRRIGVvFGQKTQLWWDLPVIDS 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 96 LHYLGILSGIPKANLKINVAASLEKVNLVEHQNKKVKSLSGGMKKRLGIAQAIIHNPQVLIVDEPTAGLDPEERVRLRHL 175
Cdd:cd03267 116 FYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNF 195
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 488422644 176 LSNLAKDK--IVIISTHIVSDIESTCENIAILDKGVIAYKG 214
Cdd:cd03267 196 LKEYNRERgtTVLLTSHYMKDIEALARRVLVIDKGRLLYDG 236
|
|
| GlnQ |
COG1126 |
ABC-type polar amino acid transport system, ATPase component [Amino acid transport and ... |
4-215 |
4.31e-35 |
|
ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440743 [Multi-domain] Cd Length: 239 Bit Score: 126.65 E-value: 4.31e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 4 IVIKDVNKTYdGKTYALKNINLEIKNG-MFGILGRNGSGKSTL---MNMLSTIlqqSSGTIEINNISLTQTK----QIRK 75
Cdd:COG1126 2 IEIENLHKSF-GDLEVLKGISLDVEKGeVVVIIGPSGSGKSTLlrcINLLEEP---DSGTITVDGEDLTDSKkdinKLRR 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 76 MIGYLPQDFDFYPNMKVKETLhylgILS-----GIPKANLKINVAASLEKVNLVEHQNKKVKSLSGGMKKRLGIAQAIIH 150
Cdd:COG1126 78 KVGMVFQQFNLFPHLTVLENV----TLApikvkKMSKAEAEERAMELLERVGLADKADAYPAQLSGGQQQRVAIARALAM 153
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 488422644 151 NPQVLIVDEPTAGLDPeERVR--LRhLLSNLAKDKI-VIISTH------IVSDiestceNIAILDKGVIAYKGS 215
Cdd:COG1126 154 EPKVMLFDEPTSALDP-ELVGevLD-VMRDLAKEGMtMVVVTHemgfarEVAD------RVVFMDGGRIVEEGP 219
|
|
| cbiO |
TIGR01166 |
cobalt transport protein ATP-binding subunit; This model describes the ATP binding subunit of ... |
13-192 |
1.22e-34 |
|
cobalt transport protein ATP-binding subunit; This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 130234 [Multi-domain] Cd Length: 190 Bit Score: 124.07 E-value: 1.22e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 13 YDGKTYALKNINLEIKNG-MFGILGRNGSGKSTLMNMLSTILQQSSGTIEINNISLTQTKQ----IRKMIGYLPQDFD-- 85
Cdd:TIGR01166 1 YPGGPEVLKGLNFAAERGeVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKglleRRQRVGLVFQDPDdq 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 86 -FYPNmkVKETLHYLGILSGIPKANLKINVAASLEKVNLVEHQNKKVKSLSGGMKKRLGIAQAIIHNPQVLIVDEPTAGL 164
Cdd:TIGR01166 81 lFAAD--VDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGL 158
|
170 180
....*....|....*....|....*....
gi 488422644 165 DPEERVRLRHLLSNL-AKDKIVIISTHIV 192
Cdd:TIGR01166 159 DPAGREQMLAILRRLrAEGMTVVISTHDV 187
|
|
| COG4586 |
COG4586 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
19-259 |
2.16e-34 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443643 [Multi-domain] Cd Length: 323 Bit Score: 127.13 E-value: 2.16e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 19 ALKNINLEIKNG-MFGILGRNGSGKSTLMNMLSTILQQSSGTIEINNIS-LTQTKQIRKMIG-----------YLPqdfd 85
Cdd:COG4586 37 AVDDISFTIEPGeIVGFIGPNGAGKSTTIKMLTGILVPTSGEVRVLGYVpFKRRKEFARRIGvvfgqrsqlwwDLP---- 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 86 fypnmkVKETLHYLGILSGIPKANLKINVAASLEKVNLVEHQNKKVKSLSGGMKKRLGIAQAIIHNPQVLIVDEPTAGLD 165
Cdd:COG4586 113 ------AIDSFRLLKAIYRIPDAEYKKRLDELVELLDLGELLDTPVRQLSLGQRMRCELAAALLHRPKILFLDEPTIGLD 186
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 166 PEERVRLRHLLSNLAKDK--IVIISTHIVSDIESTCENIAILDKGVIAYKGSIKNLIE-LSDNKVYEIT----ISPSKLN 238
Cdd:COG4586 187 VVSKEAIREFLKEYNRERgtTILLTSHDMDDIEALCDRVIVIDHGRIIYDGSLEELKErFGPYKTIVLElaepVPPLELP 266
|
250 260
....*....|....*....|.
gi 488422644 239 QLKKnnifITKIQEYEHLLKV 259
Cdd:COG4586 267 RGGE----VIEREGNRVRLEV 283
|
|
| ECF_ATPase_1 |
TIGR04520 |
energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette ... |
4-217 |
3.00e-34 |
|
energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette (ABC) proteins by homology, but belong to energy coupling factor (ECF) transport systems. The architecture in general is two ATPase subunits (or a double-length fusion protein), a T component, and a substrate capture (S) component that is highly variable, and may be interchangeable in genomes with only one T component. This model identifies many but not examples of the upstream member of the pair of ECF ATPases in Firmicutes and Mollicutes. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 275313 [Multi-domain] Cd Length: 268 Bit Score: 125.24 E-value: 3.00e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 4 IVIKDVNKTY-DGKTYALKNINLEIKNGMF-GILGRNGSGKSTLMNMLSTILQQSSGTIEINNISL---TQTKQIRKMIG 78
Cdd:TIGR04520 1 IEVENVSFSYpESEKPALKNVSLSIEKGEFvAIIGHNGSGKSTLAKLLNGLLLPTSGKVTVDGLDTldeENLWEIRKKVG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 79 YLPQDFD-------------FYP-NMkvketlhylgilsGIPKANLKINVAASLEKVNLVEHQNKKVKSLSGGMKKRLGI 144
Cdd:TIGR04520 81 MVFQNPDnqfvgatveddvaFGLeNL-------------GVPREEMRKRVDEALKLVGMEDFRDREPHLLSGGQKQRVAI 147
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 488422644 145 AQAIIHNPQVLIVDEPTAGLDPEERVRLRHLLSNLAKDK-IVIIS-THivsDIEST--CENIAILDKGVIAYKGSIK 217
Cdd:TIGR04520 148 AGVLAMRPDIIILDEATSMLDPKGRKEVLETIRKLNKEEgITVISiTH---DMEEAvlADRVIVMNKGKIVAEGTPR 221
|
|
| ABC_PotA_N |
cd03300 |
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and ... |
4-215 |
5.05e-34 |
|
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213267 [Multi-domain] Cd Length: 232 Bit Score: 123.50 E-value: 5.05e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 4 IVIKDVNKTYDGKTyALKNINLEIKNGMF-GILGRNGSGKSTLMNMLSTILQQSSGTIEINNISLTQTKQIRKMIGYLPQ 82
Cdd:cd03300 1 IELENVSKFYGGFV-ALDGVSLDIKEGEFfTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRPVNTVFQ 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 83 DFDFYPNMKVKETLHYLGILSGIPKANLKINVAASLEKVNLVEHQNKKVKSLSGGMKKRLGIAQAIIHNPQVLIVDEPTA 162
Cdd:cd03300 80 NYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLG 159
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 488422644 163 GLDPEERVRLRHLLSNLAKD--KIVIISTHIVSDIESTCENIAILDKGVIAYKGS 215
Cdd:cd03300 160 ALDLKLRKDMQLELKRLQKElgITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGT 214
|
|
| ABC_ModC_like |
cd03299 |
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely ... |
4-221 |
7.93e-34 |
|
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213266 [Multi-domain] Cd Length: 235 Bit Score: 123.21 E-value: 7.93e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 4 IVIKDVNKtyDGKTYALKNINLEIKNG-MFGILGRNGSGKSTLMNMLSTILQQSSGTIEINNISLTQTKQIRKMIGYLPQ 82
Cdd:cd03299 1 LKVENLSK--DWKEFKLKNVSLEVERGdYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDISYVPQ 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 83 DFDFYPNMKVKETLHYLGILSGIPKANLKINVAASLEKVNLVEHQNKKVKSLSGGMKKRLGIAQAIIHNPQVLIVDEPTA 162
Cdd:cd03299 79 NYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFS 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 488422644 163 GLDPEERVRLRHLLSNLAK--DKIVIISTHIVSDIESTCENIAILDKGVIAYKGSIKNLIE 221
Cdd:cd03299 159 ALDVRTKEKLREELKKIRKefGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFK 219
|
|
| ABCC_bacteriocin_exporters |
cd03245 |
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic ... |
3-210 |
3.82e-33 |
|
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Pssm-ID: 213212 [Multi-domain] Cd Length: 220 Bit Score: 121.16 E-value: 3.82e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 3 NIVIKDVNKTYDG-KTYALKNINLEIKNG-MFGILGRNGSGKSTLMNMLSTILQQSSGTIEINNISLTQ--TKQIRKMIG 78
Cdd:cd03245 2 RIEFRNVSFSYPNqEIPALDNVSLTIRAGeKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQldPADLRRNIG 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 79 YLPQD-FDFYPnmKVKETlhylgILSGIPKAN-LKINVAASLEKVN--LVEHQN-------KKVKSLSGGMKKRLGIAQA 147
Cdd:cd03245 82 YVPQDvTLFYG--TLRDN-----ITLGAPLADdERILRAAELAGVTdfVNKHPNgldlqigERGRGLSGGQRQAVALARA 154
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 488422644 148 IIHNPQVLIVDEPTAGLDPEERVRLRHLLSNLAKDKIVIISTHIVSdIESTCENIAILDKGVI 210
Cdd:cd03245 155 LLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPS-LLDLVDRIIVMDSGRI 216
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
1-221 |
5.39e-33 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 126.56 E-value: 5.39e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 1 MNNIV-IKDVNKTY-DGKTYALKNINLEIKNGMF-GILGRNGSGKSTLMNMLSTILQQS---SGTIEINNISLTQT--KQ 72
Cdd:COG1123 1 MTPLLeVRDLSVRYpGGDVPAVDGVSLTIAPGETvALVGESGSGKSTLALALMGLLPHGgriSGEVLLDGRDLLELseAL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 73 IRKMIGYLPQDFDFYPNM-----KVKETLhylgILSGIPKANLKINVAASLEKVNLVEHQNKKVKSLSGGMKKRLGIAQA 147
Cdd:COG1123 81 RGRRIGMVFQDPMTQLNPvtvgdQIAEAL----ENLGLSRAEARARVLELLEAVGLERRLDRYPHQLSGGQRQRVAIAMA 156
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 488422644 148 IIHNPQVLIVDEPTAGLDPEERVRLRHLLSNLAKD--KIVIISTHIVSDIESTCENIAILDKGVIAYKGSIKNLIE 221
Cdd:COG1123 157 LALDPDLLIADEPTTALDVTTQAEILDLLRELQRErgTTVLLITHDLGVVAEIADRVVVMDDGRIVEDGPPEEILA 232
|
|
| ABC_MalK_N |
cd03301 |
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) ... |
4-210 |
8.98e-33 |
|
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Pssm-ID: 213268 [Multi-domain] Cd Length: 213 Bit Score: 119.67 E-value: 8.98e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 4 IVIKDVNKTYdGKTYALKNINLEIKNGMF-GILGRNGSGKSTLMNMLSTILQQSSGTIEINNISLTQTKQIRKMIGYLPQ 82
Cdd:cd03301 1 VELENVTKRF-GNVTALDDLNLDIADGEFvVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMVFQ 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 83 DFDFYPNMKVKETLHYLGILSGIPKANLKINVAASLEKVNLVEHQNKKVKSLSGGMKKRLGIAQAIIHNPQVLIVDEPTA 162
Cdd:cd03301 80 NYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLS 159
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 488422644 163 GLDPEERVRLRHLLSNLAK--DKIVIISTHIVSDIESTCENIAILDKGVI 210
Cdd:cd03301 160 NLDAKLRVQMRAELKRLQQrlGTTTIYVTHDQVEAMTMADRIAVMNDGQI 209
|
|
| DppF |
COG1124 |
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ... |
4-211 |
1.28e-32 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440741 [Multi-domain] Cd Length: 248 Bit Score: 120.29 E-value: 1.28e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 4 IVIKDVNKTYDGK---TYALKNINLEIKNG-MFGILGRNGSGKSTLMNMLSTILQQSSGTIEINNISLTQ--TKQIRKMI 77
Cdd:COG1124 2 LEVRNLSVSYGQGgrrVPVLKDVSLEVAPGeSFGLVGESGSGKSTLLRALAGLERPWSGEVTFDGRPVTRrrRKAFRRRV 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 78 GYLPQD----FDfyPNMKVKETLHYLGILSGIPkaNLKINVAASLEKVNL-VEHQNKKVKSLSGGMKKRLGIAQAIIHNP 152
Cdd:COG1124 82 QMVFQDpyasLH--PRHTVDRILAEPLRIHGLP--DREERIAELLEQVGLpPSFLDRYPHQLSGGQRQRVAIARALILEP 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 488422644 153 QVLIVDEPTAGLDPEERVRLRHLLSNLAKDK---IVIIStHIVSDIESTCENIAILDKGVIA 211
Cdd:COG1124 158 ELLLLDEPTSALDVSVQAEILNLLKDLREERgltYLFVS-HDLAVVAHLCDRVAVMQNGRIV 218
|
|
| ABC_Mj1267_LivG_branched |
cd03219 |
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ... |
6-211 |
1.72e-32 |
|
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Pssm-ID: 213186 [Multi-domain] Cd Length: 236 Bit Score: 119.85 E-value: 1.72e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 6 IKDVNKTYDGKTyALKNINLEIKNG-MFGILGRNGSGKSTLMNMLSTILQQSSGTIEINNISLTQTK--QIRKM-IGYLP 81
Cdd:cd03219 3 VRGLTKRFGGLV-ALDDVSFSVRPGeIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPphEIARLgIGRTF 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 82 QDFDFYPNMKVKETL--------HYLGILSGIPKANLKIN--VAASLEKVNLVEHQNKKVKSLSGGMKKRLGIAQAIIHN 151
Cdd:cd03219 82 QIPRLFPELTVLENVmvaaqartGSGLLLARARREEREARerAEELLERVGLADLADRPAGELSYGQQRRLEIARALATD 161
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 488422644 152 PQVLIVDEPTAGLDPEERVRLRHLLSNLAKDKI-VIISTHIVSDIESTCENIAILDKG-VIA 211
Cdd:cd03219 162 PKLLLLDEPAAGLNPEETEELAELIRELRERGItVLLVEHDMDVVMSLADRVTVLDQGrVIA 223
|
|
| MdlB |
COG1132 |
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms]; |
3-223 |
1.08e-31 |
|
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms];
Pssm-ID: 440747 [Multi-domain] Cd Length: 579 Bit Score: 123.35 E-value: 1.08e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 3 NIVIKDVNKTYDGKTYALKNINLEIKNG-MFGILGRNGSGKSTLMNMLSTILQQSSGTIEINNISLTQ--TKQIRKMIGY 79
Cdd:COG1132 339 EIEFENVSFSYPGDRPVLKDISLTIPPGeTVALVGPSGSGKSTLVNLLLRFYDPTSGRILIDGVDIRDltLESLRRQIGV 418
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 80 LPQDFDFYpNMKVKETLHYlgilsGIPKANLKiNVAASLEKVNLVEHQNKKVK-----------SLSGGMKKRLGIAQAI 148
Cdd:COG1132 419 VPQDTFLF-SGTIRENIRY-----GRPDATDE-EVEEAAKAAQAHEFIEALPDgydtvvgergvNLSGGQRQRIAIARAL 491
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 488422644 149 IHNPQVLIVDEPTAGLDPE-ERvRLRHLLSNLAKDKIVIISTHIVSDIEStCENIAILDKGVIAYKGSIKNLIELS 223
Cdd:COG1132 492 LKDPPILILDEATSALDTEtEA-LIQEALERLMKGRTTIVIAHRLSTIRN-ADRILVLDDGRIVEQGTHEELLARG 565
|
|
| ABC_TM1139_LivF_branched |
cd03224 |
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of ... |
6-219 |
1.24e-31 |
|
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Pssm-ID: 213191 [Multi-domain] Cd Length: 222 Bit Score: 117.15 E-value: 1.24e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 6 IKDVNkTYDGKTYALKNINLEIKNG-MFGILGRNGSGKSTLMNMLSTILQQSSGTIEIN--NISLTQTKQIRKM-IGYLP 81
Cdd:cd03224 3 VENLN-AGYGKSQILFGVSLTVPEGeIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDgrDITGLPPHERARAgIGYVP 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 82 QDFDFYPNMKVKETLHyLGILSGIPKAnlkinVAASLEKV-----NLVEHQNKKVKSLSGGMKKRLGIAQAIIHNPQVLI 156
Cdd:cd03224 82 EGRRIFPELTVEENLL-LGAYARRRAK-----RKARLERVyelfpRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLL 155
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 488422644 157 VDEPTAGLDP---EERVRlrhLLSNLAKDKI-VIISTHIVSDIESTCENIAILDKGVIAYKGSIKNL 219
Cdd:cd03224 156 LDEPSEGLAPkivEEIFE---AIRELRDEGVtILLVEQNARFALEIADRAYVLERGRVVLEGTAAEL 219
|
|
| ABC_ModC_molybdenum_transporter |
cd03297 |
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type ... |
22-214 |
1.58e-31 |
|
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213264 [Multi-domain] Cd Length: 214 Bit Score: 116.63 E-value: 1.58e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 22 NINLEIKNGMFGILGRNGSGKSTLMNMLSTILQQSSGTIEINNISLTQT-KQI-----RKMIGYLPQDFDFYPNMKVKET 95
Cdd:cd03297 16 KIDFDLNEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSrKKInlppqQRKIGLVFQQYALFPHLNVREN 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 96 LHYlgILSGIPKANLKINVAASLEKVNLVEHQNKKVKSLSGGMKKRLGIAQAIIHNPQVLIVDEPTAGLDPEERVRLRHL 175
Cdd:cd03297 96 LAF--GLKRKRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPE 173
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 488422644 176 LSNLAKD-KI-VIISTHIVSDIESTCENIAILDKGVIAYKG 214
Cdd:cd03297 174 LKQIKKNlNIpVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214
|
|
| cbiO |
PRK13636 |
cobalt transporter ATP-binding subunit; Provisional |
4-219 |
1.93e-31 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184196 [Multi-domain] Cd Length: 283 Bit Score: 118.41 E-value: 1.93e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 4 IVIKDVNKTYDGKTYALKNINLEIKNG-MFGILGRNGSGKSTLMNMLSTILQQSSGTIEINNISLTQTKQ----IRKMIG 78
Cdd:PRK13636 6 LKVEELNYNYSDGTHALKGININIKKGeVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKglmkLRESVG 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 79 YLPQDFDFYP-NMKVKETLHYLGILSGIPKANLKINVAASLEKVNLVEHQNKKVKSLSGGMKKRLGIAQAIIHNPQVLIV 157
Cdd:PRK13636 86 MVFQDPDNQLfSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVL 165
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 488422644 158 DEPTAGLDPEERVRLRHLLSNLAK--DKIVIISTHIVSDIESTCENIAILDKGVIAYKGSIKNL 219
Cdd:PRK13636 166 DEPTAGLDPMGVSEIMKLLVEMQKelGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEV 229
|
|
| FetA |
COG4619 |
ABC-type iron transporter FetAB, ATPase component [Inorganic ion transport and metabolism]; |
4-210 |
2.49e-31 |
|
ABC-type iron transporter FetAB, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443661 [Multi-domain] Cd Length: 209 Bit Score: 116.07 E-value: 2.49e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 4 IVIKDVNKTYDGKTYaLKNINLEIKNGMF-GILGRNGSGKSTLMNMLSTILQQSSGTIEINNISLTQTK--QIRKMIGYL 80
Cdd:COG4619 1 LELEGLSFRVGGKPI-LSPVSLTLEAGECvAITGPSGSGKSTLLRALADLDPPTSGEIYLDGKPLSAMPppEWRRQVAYV 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 81 PQDFDFYPNMkVKEtlHYLGILSGIPKANLKINVAASLEKVNLVEHQ-NKKVKSLSGGMKKRLGIAQAIIHNPQVLIVDE 159
Cdd:COG4619 80 PQEPALWGGT-VRD--NLPFPFQLRERKFDRERALELLERLGLPPDIlDKPVERLSGGERQRLALIRALLLQPDVLLLDE 156
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 488422644 160 PTAGLDPEERVRLRHLLSNLAKDK--IVIISTHIVSDIESTCENIAILDKGVI 210
Cdd:COG4619 157 PTSALDPENTRRVEELLREYLAEEgrAVLWVSHDPEQIERVADRVLTLEAGRL 209
|
|
| metN |
PRK11153 |
DL-methionine transporter ATP-binding subunit; Provisional |
4-215 |
4.35e-31 |
|
DL-methionine transporter ATP-binding subunit; Provisional
Pssm-ID: 236863 [Multi-domain] Cd Length: 343 Bit Score: 118.75 E-value: 4.35e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 4 IVIKDVNKTYDGKT---YALKNINLEIKNG-MFGILGRNGSGKSTL---MNMLStilQQSSGTIEINNISLTQTK----- 71
Cdd:PRK11153 2 IELKNISKVFPQGGrtiHALNNVSLHIPAGeIFGVIGASGAGKSTLircINLLE---RPTSGRVLVDGQDLTALSekelr 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 72 QIRKMIGYLPQDFDFYPNMKVKETLHYLGILSGIPKANLKINVAASLEKVNLVEHQNKKVKSLSGGMKKRLGIAQAIIHN 151
Cdd:PRK11153 79 KARRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASN 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 488422644 152 PQVLIVDEPTAGLDPEERVRLRHLLSNLAKD---KIVIIsTHIVSDIESTCENIAILDKGVIAYKGS 215
Cdd:PRK11153 159 PKVLLCDEATSALDPATTRSILELLKDINRElglTIVLI-THEMDVVKRICDRVAVIDAGRLVEQGT 224
|
|
| cbiO |
PRK13637 |
energy-coupling factor transporter ATPase; |
4-217 |
4.38e-31 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237455 [Multi-domain] Cd Length: 287 Bit Score: 117.46 E-value: 4.38e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 4 IVIKDVNKTYDGKT----YALKNINLEIKNGMF-GILGRNGSGKSTLMNMLSTILQQSSGTIEINNISLTQTK----QIR 74
Cdd:PRK13637 3 IKIENLTHIYMEGTpfekKALDNVNIEIEDGEFvGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKvklsDIR 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 75 KMIGYLPQdfdfYPNMKVKETLHYLGILSG-----IPKANLKINVAASLEKVNLvEHQNKKVKS---LSGGMKKRLGIAQ 146
Cdd:PRK13637 83 KKVGLVFQ----YPEYQLFEETIEKDIAFGpinlgLSEEEIENRVKRAMNIVGL-DYEDYKDKSpfeLSGGQKRRVAIAG 157
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 488422644 147 AIIHNPQVLIVDEPTAGLDPEERVRLRHLLSNLAKDK--IVIISTHIVSDIESTCENIAILDKGVIAYKGSIK 217
Cdd:PRK13637 158 VVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYnmTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPR 230
|
|
| cbiO |
PRK13639 |
cobalt transporter ATP-binding subunit; Provisional |
7-217 |
7.04e-31 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184199 [Multi-domain] Cd Length: 275 Bit Score: 116.72 E-value: 7.04e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 7 KDVNKTYDGKTYALKNINLEIKNG-MFGILGRNGSGKSTLMNMLSTILQQSSGTIEINNISLTQTK----QIRKMIGYLP 81
Cdd:PRK13639 5 RDLKYSYPDGTEALKGINFKAEKGeMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKksllEVRKTVGIVF 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 82 QDFD---FYPnmKVKETLHYLGILSGIPKANLKINVAASLEKVNLVEHQNKKVKSLSGGMKKRLGIAQAIIHNPQVLIVD 158
Cdd:PRK13639 85 QNPDdqlFAP--TVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLD 162
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 159 EPTAGLDPEERVRLRHLLSNLAKDKI-VIISTHIVSDIESTCENIAILDKGVIAYKGSIK 217
Cdd:PRK13639 163 EPTSGLDPMGASQIMKLLYDLNKEGItIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPK 222
|
|
| PRK11264 |
PRK11264 |
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional |
1-219 |
7.16e-31 |
|
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Pssm-ID: 183063 [Multi-domain] Cd Length: 250 Bit Score: 116.00 E-value: 7.16e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 1 MNNIVIKDVNKTYDGKTyALKNINLEIKNG-MFGILGRNGSGKSTLMNMLSTILQQSSGTIEINNISL----------TQ 69
Cdd:PRK11264 1 MSAIEVKNLVKKFHGQT-VLHGIDLEVKPGeVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIdtarslsqqkGL 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 70 TKQIRKMIGYLPQDFDFYPNMKVKETLhYLG--ILSGIPKANLKINVAASLEKVNLVEHQNKKVKSLSGGMKKRLGIAQA 147
Cdd:PRK11264 80 IRQLRQHVGFVFQNFNLFPHRTVLENI-IEGpvIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARA 158
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 488422644 148 IIHNPQVLIVDEPTAGLDPEERVRLRHLLSNLAKDK-IVIISTHIVSDIESTCENIAILDKGVIAYKGSIKNL 219
Cdd:PRK11264 159 LAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKrTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKAL 231
|
|
| ABC_cobalt_CbiO_domain2 |
cd03226 |
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of ... |
6-205 |
1.51e-30 |
|
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213193 [Multi-domain] Cd Length: 205 Bit Score: 113.89 E-value: 1.51e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 6 IKDVNKTYDGKTYALKNINLEIKNG-MFGILGRNGSGKSTLMNMLSTILQQSSGTIEINNISLTQtKQIRKMIGYLPQDF 84
Cdd:cd03226 2 IENISFSYKKGTEILDDLSLDLYAGeIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA-KERRKSIGYVMQDV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 85 DFYPNMK-VKETLhYLGiLSGIPKANLKInvAASLEKVNLVEHQNKKVKSLSGGMKKRLGIAQAIIHNPQVLIVDEPTAG 163
Cdd:cd03226 81 DYQLFTDsVREEL-LLG-LKELDAGNEQA--ETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSG 156
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 488422644 164 LDPEERVRLRHLLSNLAK-DKIVIISTHivsDIE--STCENIAIL 205
Cdd:cd03226 157 LDYKNMERVGELIRELAAqGKAVIVITH---DYEflAKVCDRVLL 198
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
6-214 |
1.63e-30 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 119.78 E-value: 1.63e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 6 IKDVNKTYDGKTyALKNINLEIKNGM-FGILGRNGSGKSTLMNMLSTILQQSSGTIEINnisltqtKQIRkmIGYLPQDF 84
Cdd:COG0488 1 LENLSKSFGGRP-LLDDVSLSINPGDrIGLVGRNGAGKSTLLKILAGELEPDSGEVSIP-------KGLR--IGYLPQEP 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 85 DFYPNMKVKETL-----HYLGILSGIPKANLKINVA-ASLEKVNLVEHQ---------------------------NKKV 131
Cdd:COG0488 71 PLDDDLTVLDTVldgdaELRALEAELEELEAKLAEPdEDLERLAELQEEfealggweaearaeeilsglgfpeedlDRPV 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 132 KSLSGGMKKRLGIAQAIIHNPQVLIVDEPTAGLDPEERVRLRHLLSNLakDKIVIISTHivsD---IESTCENIAILDKG 208
Cdd:COG0488 151 SELSGGWRRRVALARALLSEPDLLLLDEPTNHLDLESIEWLEEFLKNY--PGTVLVVSH---DryfLDRVATRILELDRG 225
|
....*..
gi 488422644 209 -VIAYKG 214
Cdd:COG0488 226 kLTLYPG 232
|
|
| cbiO |
PRK13652 |
cobalt transporter ATP-binding subunit; Provisional |
1-254 |
2.20e-30 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 172200 [Multi-domain] Cd Length: 277 Bit Score: 115.29 E-value: 2.20e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 1 MNNIVIKDVNKTYDGKTYALKNIN-LEIKNGMFGILGRNGSGKSTLMNMLSTILQQSSGTIEINNISLTQT--KQIRKMI 77
Cdd:PRK13652 1 MHLIETRDLCYSYSGSKEALNNINfIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKEniREVRKFV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 78 GYLPQDFD---FYPNmkVKETLHYLGILSGIPKANLKINVAASLEKVNLVEHQNKKVKSLSGGMKKRLGIAQAIIHNPQV 154
Cdd:PRK13652 81 GLVFQNPDdqiFSPT--VEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQV 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 155 LIVDEPTAGLDPEERVRLRHLLSNLAKD--KIVIISTHIVSDIESTCENIAILDKGVIAYKGSIKNLI---ELSDNKVYE 229
Cdd:PRK13652 159 LVLDEPTAGLDPQGVKELIDFLNDLPETygMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFlqpDLLARVHLD 238
|
250 260
....*....|....*....|....*
gi 488422644 230 ITISPSKLNQLKKNNIFITKIQEYE 254
Cdd:PRK13652 239 LPSLPKLIRSLQAQGIAIDMAYTYQ 263
|
|
| ABC2_perm_RbbA |
NF033858 |
ribosome-associated ATPase/putative transporter RbbA; |
19-190 |
2.85e-30 |
|
ribosome-associated ATPase/putative transporter RbbA;
Pssm-ID: 468210 [Multi-domain] Cd Length: 907 Bit Score: 120.23 E-value: 2.85e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 19 ALKNINLEIKNG-MFGILGRNGSGKSTLMNMLSTILQQSSGT-------IEINNISltqtkqIRKMIGYLPQDFDFYPNM 90
Cdd:NF033858 281 AVDHVSFRIRRGeIFGFLGSNGCGKSTTMKMLTGLLPASEGEawlfgqpVDAGDIA------TRRRVGYMSQAFSLYGEL 354
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 91 KVKE--TLHylGILSGIPKANLKINVAASLEKVNLVEHQNKKVKSLSGGMKKRLGIAQAIIHNPQVLIVDEPTAGLDPEE 168
Cdd:NF033858 355 TVRQnlELH--ARLFHLPAAEIAARVAEMLERFDLADVADALPDSLPLGIRQRLSLAVAVIHKPELLILDEPTSGVDPVA 432
|
170 180
....*....|....*....|....
gi 488422644 169 RVRLRHLLSNLA-KDKIVI-ISTH 190
Cdd:NF033858 433 RDMFWRLLIELSrEDGVTIfISTH 456
|
|
| ABC_KpsT_Wzt |
cd03220 |
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC ... |
11-214 |
4.63e-30 |
|
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2.
Pssm-ID: 213187 [Multi-domain] Cd Length: 224 Bit Score: 113.01 E-value: 4.63e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 11 KTYDGKTYALKNINLEIKNG-MFGILGRNGSGKSTLMNMLSTILQQSSGTIEINNisltqtkQIRKMIGyLPQDFDfyPN 89
Cdd:cd03220 29 KGEVGEFWALKDVSFEVPRGeRIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRG-------RVSSLLG-LGGGFN--PE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 90 MKVKETLHYLGILSGIPKANLKINVAASLEKVNLVEHQNKKVKSLSGGMKKRLGIAQAIIHNPQVLIVDEPTAGLDPEER 169
Cdd:cd03220 99 LTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQ 178
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 488422644 170 VR-LRHLLSNLAKDKIVIISTHIVSDIESTCENIAILDKGVIAYKG 214
Cdd:cd03220 179 EKcQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224
|
|
| ABC_Pro_Gly_Betaine |
cd03294 |
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This ... |
15-210 |
9.02e-30 |
|
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213261 [Multi-domain] Cd Length: 269 Bit Score: 113.51 E-value: 9.02e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 15 GKTYALKNINLEIKNG-MFGILGRNGSGKSTLMNMLSTILQQSSGTIEINN-----ISLTQTKQIR-KMIGYLPQDFDFY 87
Cdd:cd03294 35 GQTVGVNDVSLDVREGeIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGqdiaaMSRKELRELRrKKISMVFQSFALL 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 88 PNMKVKETLHYLGILSGIPKANLKINVAASLEKVNLVEHQNKKVKSLSGGMKKRLGIAQAIIHNPQVLIVDEPTAGLDPE 167
Cdd:cd03294 115 PHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPL 194
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 488422644 168 ERVRLRHLLSNLAKD--KIVIISTHIVSDIESTCENIAILDKGVI 210
Cdd:cd03294 195 IRREMQDELLRLQAElqKTIVFITHDLDEALRLGDRIAIMKDGRL 239
|
|
| ABC_YhbG |
cd03218 |
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the ... |
4-221 |
9.73e-30 |
|
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Pssm-ID: 213185 [Multi-domain] Cd Length: 232 Bit Score: 112.25 E-value: 9.73e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 4 IVIKDVNKTYdGKTYALKNINLEIKNG-MFGILGRNGSGKSTLMNMLSTILQQSSGTIEINNISLTQT---KQIRKMIGY 79
Cdd:cd03218 1 LRAENLSKRY-GKRKVVNGVSLSVKQGeIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLpmhKRARLGIGY 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 80 LPQDFDFYPNMKVKETLhyLGILS--GIPKANLKINVAASLEKVNLVEHQNKKVKSLSGGMKKRLGIAQAIIHNPQVLIV 157
Cdd:cd03218 80 LPQEASIFRKLTVEENI--LAVLEirGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLL 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 488422644 158 DEPTAGLDPEERVRLRHLLSNLAKDKI-VIISTHIVSDIESTCENIAILDKGVIAYKGSIKNLIE 221
Cdd:cd03218 158 DEPFAGVDPIAVQDIQKIIKILKDRGIgVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAA 222
|
|
| cbiO |
PRK13634 |
cobalt transporter ATP-binding subunit; Provisional |
4-215 |
1.29e-29 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237454 [Multi-domain] Cd Length: 290 Bit Score: 113.58 E-value: 1.29e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 4 IVIKDVNKTYDGKT----YALKNINLEIKNGMF-GILGRNGSGKSTLMNMLSTILQQSSGTIEINNISLT------QTKQ 72
Cdd:PRK13634 3 ITFQKVEHRYQYKTpferRALYDVNVSIPSGSYvAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITagkknkKLKP 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 73 IRKMIGYLpqdFDFYPNMKVKETLHY---LGILS-GIPKANLKINVAASLEKVNLVEH-QNKKVKSLSGGMKKRLGIAQA 147
Cdd:PRK13634 83 LRKKVGIV---FQFPEHQLFEETVEKdicFGPMNfGVSEEDAKQKAREMIELVGLPEElLARSPFELSGGQMRRVAIAGV 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 148 IIHNPQVLIVDEPTAGLDPEERVRLRHLLSNLAKDK--IVIISTHIVSDIESTCENIAILDKGVIAYKGS 215
Cdd:PRK13634 160 LAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKglTTVLVTHSMEDAARYADQIVVMHKGTVFLQGT 229
|
|
| ABCC_Glucan_exporter_like |
cd03254 |
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan ... |
3-222 |
2.99e-29 |
|
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213221 [Multi-domain] Cd Length: 229 Bit Score: 111.16 E-value: 2.99e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 3 NIVIKDVNKTYDGKTYALKNINLEIKNGMF-GILGRNGSGKSTLMNMLSTILQQSSGTIEINNISLTQT--KQIRKMIGY 79
Cdd:cd03254 2 EIEFENVNFSYDEKKPVLKDINFSIKPGETvAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDIsrKSLRSMIGV 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 80 LPQDfdfypnmkvketlhyLGILSGIPKANLKIN--------VAASLEKVNLVE-----------HQNKKVKSLSGGMKK 140
Cdd:cd03254 82 VLQD---------------TFLFSGTIMENIRLGrpnatdeeVIEAAKEAGAHDfimklpngydtVLGENGGNLSQGERQ 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 141 RLGIAQAIIHNPQVLIVDEPTAGLDPEERVRLRHLLSNLAKDKIVIISTHIVSDIESTcENIAILDKGVIAYKGSIKNLI 220
Cdd:cd03254 147 LLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKNA-DKILVLDDGKIIEEGTHDELL 225
|
..
gi 488422644 221 EL 222
Cdd:cd03254 226 AK 227
|
|
| TagH |
COG1134 |
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate ... |
10-222 |
5.86e-29 |
|
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440749 [Multi-domain] Cd Length: 245 Bit Score: 110.56 E-value: 5.86e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 10 NKTYDGKTYALKNINLEIKNG-MFGILGRNGSGKSTLMNMLSTILQQSSGTIEINnisltqtkqirkmiGYLPQDFD--- 85
Cdd:COG1134 32 RRTRREEFWALKDVSFEVERGeSVGIIGRNGAGKSTLLKLIAGILEPTSGRVEVN--------------GRVSALLElga 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 86 -FYPNMKVKETLHYLGILSGIPKANLKINVAASLEKVNLVEHQNKKVKSLSGGMKKRLGIAQAIIHNPQVLIVDEPTAGL 164
Cdd:COG1134 98 gFHPELTGRENIYLNGRLLGLSRKEIDEKFDEIVEFAELGDFIDQPVKTYSSGMRARLAFAVATAVDPDILLVDEVLAVG 177
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 488422644 165 DPEERVRLRHLLSNLAKD-KIVIISTHIVSDIESTCENIAILDKGVIAYKGSIKNLIEL 222
Cdd:COG1134 178 DAAFQKKCLARIRELRESgRTVIFVSHSMGAVRRLCDRAIWLEKGRLVMDGDPEEVIAA 236
|
|
| PRK11160 |
PRK11160 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
3-220 |
6.69e-29 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236865 [Multi-domain] Cd Length: 574 Bit Score: 115.69 E-value: 6.69e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 3 NIVIKDVNKTY-DGKTYALKNINLEIKNGMF-GILGRNGSGKSTLMNMLSTILQQSSGTIEINNISLTQ--TKQIRKMIG 78
Cdd:PRK11160 338 SLTLNNVSFTYpDQPQPVLKGLSLQIKAGEKvALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADysEAALRQAIS 417
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 79 YLPQDFDfypnmkvketlhylgILSGIPKANLKI--------NVAASLEKV---NLVEhQNKKVKS--------LSGGMK 139
Cdd:PRK11160 418 VVSQRVH---------------LFSATLRDNLLLaapnasdeALIEVLQQVgleKLLE-DDKGLNAwlgeggrqLSGGEQ 481
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 140 KRLGIAQAIIHNPQVLIVDEPTAGLDPE-ERvRLRHLLSNLAKDKIVIISTHIVSDIESTcENIAILDKGVIAYKGSIKN 218
Cdd:PRK11160 482 RRLGIARALLHDAPLLLLDEPTEGLDAEtER-QILELLAEHAQNKTVLMITHRLTGLEQF-DRICVMDNGQIIEQGTHQE 559
|
..
gi 488422644 219 LI 220
Cdd:PRK11160 560 LL 561
|
|
| 3a01204 |
TIGR00955 |
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, ... |
20-222 |
8.86e-29 |
|
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273361 [Multi-domain] Cd Length: 617 Bit Score: 115.53 E-value: 8.86e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 20 LKNINLEIKNG-MFGILGRNGSGKSTLMNMLSTILQ---QSSGTIEINNISLTQtKQIRKMIGYLPQDFDFYPNMKVKET 95
Cdd:TIGR00955 41 LKNVSGVAKPGeLLAVMGSSGAGKTTLMNALAFRSPkgvKGSGSVLLNGMPIDA-KEMRAISAYVQQDDLFIPTLTVREH 119
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 96 LHYLGIL---SGIPKANLKINVAASLEKVNLVEHQNKK------VKSLSGGMKKRLGIAQAIIHNPQVLIVDEPTAGLDP 166
Cdd:TIGR00955 120 LMFQAHLrmpRRVTKKEKRERVDEVLQALGLRKCANTRigvpgrVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDS 199
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 488422644 167 EERVRLRHLLSNLA-KDKIVIISTH-IVSDIESTCENIAILDKGVIAYKGSIKNLIEL 222
Cdd:TIGR00955 200 FMAYSVVQVLKGLAqKGKTIICTIHqPSSELFELFDKIILMAEGRVAYLGSPDQAVPF 257
|
|
| glnQ |
PRK09493 |
glutamine ABC transporter ATP-binding protein GlnQ; |
4-221 |
9.07e-29 |
|
glutamine ABC transporter ATP-binding protein GlnQ;
Pssm-ID: 181906 [Multi-domain] Cd Length: 240 Bit Score: 110.18 E-value: 9.07e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 4 IVIKDVNKTYdGKTYALKNINLEIKNG-MFGILGRNGSGKSTLM---NMLSTIlqqSSGTIEINNISLTQTK----QIRK 75
Cdd:PRK09493 2 IEFKNVSKHF-GPTQVLHNIDLNIDQGeVVVIIGPSGSGKSTLLrciNKLEEI---TSGDLIVDGLKVNDPKvderLIRQ 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 76 MIGYLPQDFDFYPNMKVKETLHYLGI-LSGIPKANLKINVAASLEKVNLVEHQNKKVKSLSGGMKKRLGIAQAIIHNPQV 154
Cdd:PRK09493 78 EAGMVFQQFYLFPHLTALENVMFGPLrVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKL 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 488422644 155 LIVDEPTAGLDPEERVRLRHLLSNLAKDKI-VIISTHIVSDIESTCENIAILDKGVIAYKGSIKNLIE 221
Cdd:PRK09493 158 MLFDEPTSALDPELRHEVLKVMQDLAEEGMtMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIK 225
|
|
| cbiO |
PRK13643 |
energy-coupling factor transporter ATPase; |
4-246 |
9.21e-29 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184203 [Multi-domain] Cd Length: 288 Bit Score: 111.36 E-value: 9.21e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 4 IVIKDVNKTYDGKT----YALKNINLEIKNGMF-GILGRNGSGKSTLMNMLSTILQQSSGTIEINNISLTQT------KQ 72
Cdd:PRK13643 2 IKFEKVNYTYQPNSpfasRALFDIDLEVKKGSYtALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTskqkeiKP 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 73 IRKMIGYLpqdFDFYPNMKVKETLHYLGILS----GIPKANLKINVAASLEKVNLV-EHQNKKVKSLSGGMKKRLGIAQA 147
Cdd:PRK13643 82 VRKKVGVV---FQFPESQLFEETVLKDVAFGpqnfGIPKEKAEKIAAEKLEMVGLAdEFWEKSPFELSGGQMRRVAIAGI 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 148 IIHNPQVLIVDEPTAGLDPEERVRLRHLLSNLAKD-KIVIISTHIVSDIESTCENIAILDKGVIAYKGSIKNLIELSDN- 225
Cdd:PRK13643 159 LAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSgQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDVFQEVDFl 238
|
250 260
....*....|....*....|...
gi 488422644 226 KVYEITISPSK--LNQLKKNNIF 246
Cdd:PRK13643 239 KAHELGVPKAThfADQLQKTGAV 261
|
|
| ABC_PstB_phosphate_transporter |
cd03260 |
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of ... |
4-210 |
1.11e-28 |
|
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Pssm-ID: 213227 [Multi-domain] Cd Length: 227 Bit Score: 109.58 E-value: 1.11e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 4 IVIKDVNKTYDGKtYALKNINLEI-KNGMFGILGRNGSGKSTL---MNMLSTILQQ--SSGTIEIN--NISLTQTKQI-- 73
Cdd:cd03260 1 IELRDLNVYYGDK-HALKDISLDIpKGEITALIGPSGCGKSTLlrlLNRLNDLIPGapDEGEVLLDgkDIYDLDVDVLel 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 74 RKMIGYLPQdfdfYPN---MKVKETLHYLGILSGI-PKANLKINVAASLEKVNLVE--HQNKKVKSLSGGMKKRLGIAQA 147
Cdd:cd03260 80 RRRVGMVFQ----KPNpfpGSIYDNVAYGLRLHGIkLKEELDERVEEALRKAALWDevKDRLHALGLSGGQQQRLCLARA 155
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 488422644 148 IIHNPQVLIVDEPTAGLDPEERVRLRHLLSNLAKDKIVIISTHIVSDIESTCENIAILDKGVI 210
Cdd:cd03260 156 LANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRL 218
|
|
| CysA |
COG1118 |
ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and ... |
4-215 |
2.13e-28 |
|
ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440735 [Multi-domain] Cd Length: 348 Bit Score: 111.39 E-value: 2.13e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 4 IVIKDVNKTYdGKTYALKNINLEIKNG-MFGILGRNGSGKSTLMNMLSTILQQSSGTIEINNISLTQTKQIRKM-IGYLP 81
Cdd:COG1118 3 IEVRNISKRF-GSFTLLDDVSLEIASGeLVALLGPSGSGKTTLLRIIAGLETPDSGRIVLNGRDLFTNLPPRERrVGFVF 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 82 QDFDFYPNMKVKETLHY-LGILsGIPKANLKINVAASLEKVNLVEHQNKKVKSLSGGMKKRLGIAQAIIHNPQVLIVDEP 160
Cdd:COG1118 82 QHYALFPHMTVAENIAFgLRVR-PPSKAEIRARVEELLELVQLEGLADRYPSQLSGGQRQRVALARALAVEPEVLLLDEP 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 161 TAGLDPEERVRLRHLLSNLAKD--KIVIISTHivsDIE---STCENIAILDKGVIAYKGS 215
Cdd:COG1118 161 FGALDAKVRKELRRWLRRLHDElgGTTVFVTH---DQEealELADRVVVMNQGRIEQVGT 217
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
4-216 |
2.81e-28 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 113.24 E-value: 2.81e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 4 IVIKDVNKTYDGKTYaLKNINLEIKNGM-FGILGRNGSGKSTLMNMLSTILQQSSGTIEINnislTQTKqirkmIGYLPQ 82
Cdd:COG0488 316 LELEGLSKSYGDKTL-LDDLSLRIDRGDrIGLIGPNGAGKSTLLKLLAGELEPDSGTVKLG----ETVK-----IGYFDQ 385
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 83 DFD-FYPNMKVKETLHYLGilsgiPKANlKINVAASLEKVNLV-EHQNKKVKSLSGGMKKRLGIAQAIIHNPQVLIVDEP 160
Cdd:COG0488 386 HQEeLDPDKTVLDELRDGA-----PGGT-EQEVRGYLGRFLFSgDDAFKPVGVLSGGEKARLALAKLLLSPPNVLLLDEP 459
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 488422644 161 TAGLDPEERVRL-----------------RHLLSNLAkdkiviisTHIvsdiestcenIAILDKGVIAYKGSI 216
Cdd:COG0488 460 TNHLDIETLEALeealddfpgtvllvshdRYFLDRVA--------TRI----------LEFEDGGVREYPGGY 514
|
|
| TauB |
COG4525 |
ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]; |
1-196 |
3.64e-28 |
|
ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443596 [Multi-domain] Cd Length: 262 Bit Score: 108.80 E-value: 3.64e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 1 MNNIVIKDVNKTYDGK---TYALKNINLEIKNGMFG-ILGRNGSGKSTLMNMLSTILQQSSGTIEINNISLTQTKQIRkm 76
Cdd:COG4525 1 MSMLTVRHVSVRYPGGgqpQPALQDVSLTIESGEFVvALGASGCGKTTLLNLIAGFLAPSSGEITLDGVPVTGPGADR-- 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 77 iGYLPQDFDFYPNMKVKETLHyLGI-LSGIPKANLKINVAASLEKVNLVEHQNKKVKSLSGGMKKRLGIAQAIIHNPQVL 155
Cdd:COG4525 79 -GVVFQKDALLPWLNVLDNVA-FGLrLRGVPKAERRARAEELLALVGLADFARRRIWQLSGGMRQRVGIARALAADPRFL 156
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 488422644 156 IVDEPTAGLDPEERVRLRHLLSNLAKD--KIVIISTHivsDIE 196
Cdd:COG4525 157 LMDEPFGALDALTREQMQELLLDVWQRtgKGVFLITH---SVE 196
|
|
| ABCC_MsbA |
cd03251 |
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; ... |
4-228 |
4.14e-28 |
|
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213218 [Multi-domain] Cd Length: 234 Bit Score: 108.09 E-value: 4.14e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 4 IVIKDVNKTYDGK-TYALKNINLEIKNG-MFGILGRNGSGKSTLMNMLSTILQQSSGTIEINNISLT--QTKQIRKMIGY 79
Cdd:cd03251 1 VEFKNVTFRYPGDgPPVLRDISLDIPAGeTVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRdyTLASLRRQIGL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 80 LPQD-FDFypNMKVKETLHYlgilsGIPKANLKiNVAASLEKVNLVEHQNKK------------VKsLSGGMKKRLGIAQ 146
Cdd:cd03251 81 VSQDvFLF--NDTVAENIAY-----GRPGATRE-EVEEAARAANAHEFIMELpegydtvigergVK-LSGGQRQRIAIAR 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 147 AIIHNPQVLIVDEPTAGLDPEERVRLRHLLSNLAKDKIVIISTHIVSDIESTCEnIAILDKGVIAYKGSIKNLieLSDNK 226
Cdd:cd03251 152 ALLKDPPILILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIENADR-IVVLEDGKIVERGTHEEL--LAQGG 228
|
..
gi 488422644 227 VY 228
Cdd:cd03251 229 VY 230
|
|
| ABCC_ATM1_transporter |
cd03253 |
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC ... |
4-228 |
1.49e-27 |
|
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213220 [Multi-domain] Cd Length: 236 Bit Score: 106.55 E-value: 1.49e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 4 IVIKDVNKTYDGKTYALKNINLEIKNG-MFGILGRNGSGKSTLMNMLSTILQQSSGTIEINNISLTQTKQ--IRKMIGYL 80
Cdd:cd03253 1 IEFENVTFAYDPGRPVLKDVSFTIPAGkKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLdsLRRAIGVV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 81 PQD---FDfypnmkvkETLHYlGILSGIPKA-NLKINVAASLEK-----VNLVEHQNKKVKS----LSGGMKKRLGIAQA 147
Cdd:cd03253 81 PQDtvlFN--------DTIGY-NIRYGRPDAtDEEVIEAAKAAQihdkiMRFPDGYDTIVGErglkLSGGEKQRVAIARA 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 148 IIHNPQVLIVDEPTAGLDPE-ERVRLRHLLSnLAKDKIVIISTHIVSDIeSTCENIAILDKGVIAYKGSIKNLieLSDNK 226
Cdd:cd03253 152 ILKNPPILLLDEATSALDTHtEREIQAALRD-VSKGRTTIVIAHRLSTI-VNADKIIVLKDGRIVERGTHEEL--LAKGG 227
|
..
gi 488422644 227 VY 228
Cdd:cd03253 228 LY 229
|
|
| ABC_Carb_Monos_I |
cd03216 |
First domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
4-211 |
1.51e-27 |
|
First domain of the ATP-binding cassette component of monosaccharide transport system; This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213183 [Multi-domain] Cd Length: 163 Bit Score: 104.43 E-value: 1.51e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 4 IVIKDVNKTYdGKTYALKNINLEIKNG-MFGILGRNGSGKSTLMNMLSTILQQSSGTIEINNisltqtkqirkmigylpQ 82
Cdd:cd03216 1 LELRGITKRF-GGVKALDGVSLSVRRGeVHALLGENGAGKSTLMKILSGLYKPDSGEILVDG-----------------K 62
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 83 DFDFYpnmkvketlhylgilsgipkanlkiNVAASLEK-VNLVeHQnkkvksLSGGMKKRLGIAQAIIHNPQVLIVDEPT 161
Cdd:cd03216 63 EVSFA-------------------------SPRDARRAgIAMV-YQ------LSVGERQMVEIARALARNARLLILDEPT 110
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 488422644 162 AGLDPEERVRLRHLLSNLAKDKI-VIISTHIVSDIESTCENIAILDKGVIA 211
Cdd:cd03216 111 AALTPAEVERLFKVIRRLRAQGVaVIFISHRLDEVFEIADRVTVLRDGRVV 161
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
6-205 |
2.10e-27 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 110.88 E-value: 2.10e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 6 IKDVNKTYDGkTYALKNINLEIKNG-MFGILGRNGSGKSTLMNMLSTILQQSSGTIEINN--ISLTQTKQIRKM-IGYLP 81
Cdd:COG1129 7 MRGISKSFGG-VKALDGVSLELRPGeVHALLGENGAGKSTLMKILSGVYQPDSGEILLDGepVRFRSPRDAQAAgIAIIH 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 82 QDFDFYPNMKVKETLhYLGILsgiPKANLKINVAAS-------LEKVNLVEHQNKKVKSLSGGMKKRLGIAQAIIHNPQV 154
Cdd:COG1129 86 QELNLVPNLSVAENI-FLGRE---PRRGGLIDWRAMrrrarelLARLGLDIDPDTPVGDLSVAQQQLVEIARALSRDARV 161
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 488422644 155 LIVDEPTAGLDPEERVRLRHLLSNLaKDK---IVIIStHIVSDIESTCENIAIL 205
Cdd:COG1129 162 LILDEPTASLTEREVERLFRIIRRL-KAQgvaIIYIS-HRLDEVFEIADRVTVL 213
|
|
| LivF |
COG0410 |
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid ... |
6-227 |
2.35e-27 |
|
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid transport and metabolism];
Pssm-ID: 440179 [Multi-domain] Cd Length: 236 Bit Score: 106.22 E-value: 2.35e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 6 IKDVNKTYdGKTYALKNINLEIKNG-MFGILGRNGSGKSTLMNMLSTILQQSSGTIEINNISLTQTK--QIRKM-IGYLP 81
Cdd:COG0410 6 VENLHAGY-GGIHVLHGVSLEVEEGeIVALLGRNGAGKTTLLKAISGLLPPRSGSIRFDGEDITGLPphRIARLgIGYVP 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 82 QDFDFYPNMKVKETLHyLGILSGIPKAnlkiNVAASLEKV-----NLVEHQNKKVKSLSGGMKKRLGIAQAIIHNPQVLI 156
Cdd:COG0410 85 EGRRIFPSLTVEENLL-LGAYARRDRA----EVRADLERVyelfpRLKERRRQRAGTLSGGEQQMLAIGRALMSRPKLLL 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 488422644 157 VDEPTAGLDP---EErvrLRHLLSNLAKDKIVII----STHIVSDIestCENIAILDKGVIAYKGSIKNLieLSDNKV 227
Cdd:COG0410 160 LDEPSLGLAPlivEE---IFEIIRRLNREGVTILlveqNARFALEI---ADRAYVLERGRIVLEGTAAEL--LADPEV 229
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
4-208 |
2.40e-27 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 110.50 E-value: 2.40e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 4 IVIKDVNKTYDGKTyALKNINLEIKNG-MFGILGRNGSGKSTLMNMLSTILQQSSGTIEINN--ISLTQTKQ-IRKMIGY 79
Cdd:COG3845 6 LELRGITKRFGGVV-ANDDVSLTVRPGeIHALLGENGAGKSTLMKILYGLYQPDSGEILIDGkpVRIRSPRDaIALGIGM 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 80 LPQDFDFYPNMKVKETLhylgILSGIPKANLKINVAASLEKVNLVEHQ-------NKKVKSLSGGMKKRLGIAQAIIHNP 152
Cdd:COG3845 85 VHQHFMLVPNLTVAENI----VLGLEPTKGGRLDRKAARARIRELSERygldvdpDAKVEDLSVGEQQRVEILKALYRGA 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 488422644 153 QVLIVDEPTAGLDPEERVRLRHLLSNLAKD-KIVIISTHIVSDIESTCENIAILDKG 208
Cdd:COG3845 161 RILILDEPTAVLTPQEADELFEILRRLAAEgKSIIFITHKLREVMAIADRVTVLRRG 217
|
|
| ThiQ |
COG3840 |
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism]; |
3-220 |
2.50e-27 |
|
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism];
Pssm-ID: 443051 [Multi-domain] Cd Length: 232 Bit Score: 105.99 E-value: 2.50e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 3 NIVIKDVNKTYDGKTyalKNINLEIKNGMF-GILGRNGSGKSTLMNMLSTILQQSSGTIEINNISLTQTKQIRKMIGYLP 81
Cdd:COG3840 1 MLRLDDLTYRYGDFP---LRFDLTIAAGERvAILGPSGAGKSTLLNLIAGFLPPDSGRILWNGQDLTALPPAERPVSMLF 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 82 QDFDFYPNMKVKETLhYLGIlsgipKANLKIN------VAASLEKVNLVEHQNKKVKSLSGGMKKRLGIAQAIIHNPQVL 155
Cdd:COG3840 78 QENNLFPHLTVAQNI-GLGL-----RPGLKLTaeqraqVEQALERVGLAGLLDRLPGQLSGGQRQRVALARCLVRKRPIL 151
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 488422644 156 IVDEPTAGLDPEERVRLRHLLSNLAKDK--IVIISTHIVSDIESTCENIAILDKGVIAYKGSIKNLI 220
Cdd:COG3840 152 LLDEPFSALDPALRQEMLDLVDELCRERglTVLMVTHDPEDAARIADRVLLVADGRIAADGPTAALL 218
|
|
| LptB |
COG1137 |
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope ... |
1-228 |
4.42e-27 |
|
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440752 [Multi-domain] Cd Length: 240 Bit Score: 105.50 E-value: 4.42e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 1 MNNIVIKDVNKTYDGKTyALKNINLEIKNG-MFGILGRNGSGKSTLMNMLSTILQQSSGTIEINNISLTQ---TKQIRKM 76
Cdd:COG1137 1 MMTLEAENLVKSYGKRT-VVKDVSLEVNQGeIVGLLGPNGAGKTTTFYMIVGLVKPDSGRIFLDGEDITHlpmHKRARLG 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 77 IGYLPQDFDFYPNMKVKETLhyLGIL--SGIPKANLKINVAASLEKVNLVEHQNKKVKSLSGGMKKRLGIAQAIIHNPQV 154
Cdd:COG1137 80 IGYLPQEASIFRKLTVEDNI--LAVLelRKLSKKEREERLEELLEEFGITHLRKSKAYSLSGGERRRVEIARALATNPKF 157
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 488422644 155 LIVDEPTAGLDP---EErvrLRHLLSNLAKDKI-VIISTHIVSDIESTCENIAILDKGVIAYKGSIKNLIELSD-NKVY 228
Cdd:COG1137 158 ILLDEPFAGVDPiavAD---IQKIIRHLKERGIgVLITDHNVRETLGICDRAYIISEGKVLAEGTPEEILNNPLvRKVY 233
|
|
| ABCC_Protease_Secretion |
cd03246 |
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of ... |
4-210 |
4.96e-27 |
|
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA.
Pssm-ID: 213213 [Multi-domain] Cd Length: 173 Bit Score: 103.45 E-value: 4.96e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 4 IVIKDVNKTY-DGKTYALKNINLEIKNG-MFGILGRNGSGKSTLMNMLSTILQQSSGTIEINNISLTQT--KQIRKMIGY 79
Cdd:cd03246 1 LEVENVSFRYpGAEPPVLRNVSFSIEPGeSLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWdpNELGDHVGY 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 80 LPQDfdfypnmkVKetlhylgILSGIPKANLkinvaaslekvnlvehqnkkvksLSGGMKKRLGIAQAIIHNPQVLIVDE 159
Cdd:cd03246 81 LPQD--------DE-------LFSGSIAENI-----------------------LSGGQRQRLGLARALYGNPRILVLDE 122
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 488422644 160 PTAGLDPEERVRLRHLLSNL-AKDKIVIISTHIVSDIEStCENIAILDKGVI 210
Cdd:cd03246 123 PNSHLDVEGERALNQAIAALkAAGATRIVIAHRPETLAS-ADRILVLEDGRV 173
|
|
| potA |
PRK09452 |
spermidine/putrescine ABC transporter ATP-binding protein PotA; |
4-221 |
5.31e-27 |
|
spermidine/putrescine ABC transporter ATP-binding protein PotA;
Pssm-ID: 236523 [Multi-domain] Cd Length: 375 Bit Score: 108.11 E-value: 5.31e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 4 IVIKDVNKTYDGKTyALKNINLEIKNGMF-GILGRNGSGKSTLMNMLSTILQQSSGTIEINNISLTQTKQIRKMIGYLPQ 82
Cdd:PRK09452 15 VELRGISKSFDGKE-VISNLDLTINNGEFlTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRHVNTVFQ 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 83 DFDFYPNMKVKETLHYLGILSGIPKANLKINVAASLEKVNLVEHQNKKVKSLSGGMKKRLGIAQAIIHNPQVLIVDEPTA 162
Cdd:PRK09452 94 SYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLS 173
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 488422644 163 GLDPEERVRLRHLLSNLAKDKIV--IISTHivsDIE---STCENIAILDKGVIAYKGSIKNLIE 221
Cdd:PRK09452 174 ALDYKLRKQMQNELKALQRKLGItfVFVTH---DQEealTMSDRIVVMRDGRIEQDGTPREIYE 234
|
|
| cbiO |
PRK13649 |
energy-coupling factor transporter ATPase; |
4-221 |
7.91e-27 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184208 [Multi-domain] Cd Length: 280 Bit Score: 105.98 E-value: 7.91e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 4 IVIKDVNKTYDGKT----YALKNINLEIKNGMF-GILGRNGSGKSTLMNMLSTILQQSSGTIEINNISLTQT------KQ 72
Cdd:PRK13649 3 INLQNVSYTYQAGTpfegRALFDVNLTIEDGSYtAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTsknkdiKQ 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 73 IRKMIGYLpqdFDFYPNMKVKETLhyLGILSGIPKaNLKIN----VAASLEKVNLV----EHQNKKVKSLSGGMKKRLGI 144
Cdd:PRK13649 83 IRKKVGLV---FQFPESQLFEETV--LKDVAFGPQ-NFGVSqeeaEALAREKLALVgiseSLFEKNPFELSGGQMRRVAI 156
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 488422644 145 AQAIIHNPQVLIVDEPTAGLDPEERVRLRHLLSNLAKDKIVII-STHIVSDIESTCENIAILDKGVIAYKGSIKNLIE 221
Cdd:PRK13649 157 AGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVlVTHLMDDVANYADFVYVLEKGKLVLSGKPKDIFQ 234
|
|
| DppD |
COG0444 |
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ... |
6-216 |
8.66e-27 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440213 [Multi-domain] Cd Length: 320 Bit Score: 106.68 E-value: 8.66e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 6 IKDVNKTY---DGKTYALKNINLEIKNG-MFGILGRNGSGKSTLMNMLSTILQ---QSSGTIEINNISLT-----QTKQI 73
Cdd:COG0444 4 VRNLKVYFptrRGVVKAVDGVSFDVRRGeTLGLVGESGSGKSTLARAILGLLPppgITSGEILFDGEDLLklsekELRKI 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 74 R-KMIGYLPQD----FDfyPNMKVK----ETLHYLGILSgipKANLKINVAASLEKVNLVE---------HQnkkvksLS 135
Cdd:COG0444 84 RgREIQMIFQDpmtsLN--PVMTVGdqiaEPLRIHGGLS---KAEARERAIELLERVGLPDperrldrypHE------LS 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 136 GGMKKRLGIAQAIIHNPQVLIVDEPTAGLDPEERVRLRHLLSNLAKDK---IVIIsTH---IVSDIestCENIAILdkgv 209
Cdd:COG0444 153 GGMRQRVMIARALALEPKLLIADEPTTALDVTIQAQILNLLKDLQRELglaILFI-THdlgVVAEI---ADRVAVM---- 224
|
....*..
gi 488422644 210 iaYKGSI 216
Cdd:COG0444 225 --YAGRI 229
|
|
| cbiO |
PRK13644 |
energy-coupling factor transporter ATPase; |
4-247 |
9.08e-27 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 106587 [Multi-domain] Cd Length: 274 Bit Score: 105.45 E-value: 9.08e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 4 IVIKDVNKTYDGKTYALKNINLEIKNGMF-GILGRNGSGKSTLMNMLSTILQQSSGTIEINNIS---LTQTKQIRKMIGY 79
Cdd:PRK13644 2 IRLENVSYSYPDGTPALENINLVIKKGEYiGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDtgdFSKLQGIRKLVGI 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 80 LPQDFDF-YPNMKVKETLHYLGILSGIPKANLKINVAASLEKVNLVEHQNKKVKSLSGGMKKRLGIAQAIIHNPQVLIVD 158
Cdd:PRK13644 82 VFQNPETqFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFD 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 159 EPTAGLDPE------ERVRLRHllsnlAKDKIVIISTHIVSDIESTcENIAILDKGVIAYKGSIKNLieLSDNKVYEITI 232
Cdd:PRK13644 162 EVTSMLDPDsgiavlERIKKLH-----EKGKTIVYITHNLEELHDA-DRIIVMDRGKIVLEGEPENV--LSDVSLQTLGL 233
|
250
....*....|....*....
gi 488422644 233 SPSKL----NQLKKNNIFI 247
Cdd:PRK13644 234 TPPSLielaENLKMHGVVI 252
|
|
| cbiO |
PRK13647 |
cobalt transporter ATP-binding subunit; Provisional |
1-214 |
1.03e-26 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237457 [Multi-domain] Cd Length: 274 Bit Score: 105.59 E-value: 1.03e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 1 MNNIV-IKDVNKTYDGKTYALKNINLEI-KNGMFGILGRNGSGKSTLMNMLSTILQQSSGTIEINNISLTQT--KQIRKM 76
Cdd:PRK13647 1 MDNIIeVEDLHFRYKDGTKALKGLSLSIpEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAEneKWVRSK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 77 IGYLPQDFD---FypNMKVKETLHYLGILSGIPKANLKINVAASLEKVNLVEHQNKKVKSLSGGMKKRLGIAQAIIHNPQ 153
Cdd:PRK13647 81 VGLVFQDPDdqvF--SSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPD 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 488422644 154 VLIVDEPTAGLDPEERVRLRHLLSNLAKD-KIVIISTHIVSDIESTCENIAILDKG-VIAYKG 214
Cdd:PRK13647 159 VIVLDEPMAYLDPRGQETLMEILDRLHNQgKTVIVATHDVDLAAEWADQVIVLKEGrVLAEGD 221
|
|
| cbiO |
PRK13635 |
energy-coupling factor ABC transporter ATP-binding protein; |
1-224 |
1.22e-26 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184195 [Multi-domain] Cd Length: 279 Bit Score: 105.48 E-value: 1.22e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 1 MNNIV-IKDVNKTY-DGKTYALKNINLEIKNGMF-GILGRNGSGKSTLMNMLSTILQQSSGTIEINNISLTQTK--QIRK 75
Cdd:PRK13635 2 KEEIIrVEHISFRYpDAATYALKDVSFSVYEGEWvAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETvwDVRR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 76 MIGYLPQDFDfypNMKVKETLH---YLGIL-SGIPKANLKINVAASLEKVNLVEHQNKKVKSLSGGMKKRLGIAQAIIHN 151
Cdd:PRK13635 82 QVGMVFQNPD---NQFVGATVQddvAFGLEnIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQ 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 152 PQVLIVDEPTAGLDPEERVR----LRHLLSNLAkdkIVIIS-THivsDIE--STCENIAILDKGVIAYKGSIKNLIELSD 224
Cdd:PRK13635 159 PDIIILDEATSMLDPRGRREvletVRQLKEQKG---ITVLSiTH---DLDeaAQADRVIVMNKGEILEEGTPEEIFKSGH 232
|
|
| ssuB |
PRK11247 |
aliphatic sulfonates transport ATP-binding subunit; Provisional |
4-216 |
2.54e-26 |
|
aliphatic sulfonates transport ATP-binding subunit; Provisional
Pssm-ID: 183055 [Multi-domain] Cd Length: 257 Bit Score: 103.99 E-value: 2.54e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 4 IVIKDVNKTYDGKTyALKNINLEIKNGMF-GILGRNGSGKSTLMNMLSTILQQSSGTIEINNISLTQTKQ-IRKMIgylp 81
Cdd:PRK11247 13 LLLNAVSKRYGERT-VLNQLDLHIPAGQFvAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREdTRLMF---- 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 82 QDFDFYPNMKVKETLHyLGIlsgipKANLKINVAASLEKVNLVEHQNKKVKSLSGGMKKRLGIAQAIIHNPQVLIVDEPT 161
Cdd:PRK11247 88 QDARLLPWKKVIDNVG-LGL-----KGQWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPL 161
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 488422644 162 AGLDPEERVRLRHLLSNLAKDK--IVIISTHIVSdiestcENIAILDKGVIAYKGSI 216
Cdd:PRK11247 162 GALDALTRIEMQDLIESLWQQHgfTVLLVTHDVS------EAVAMADRVLLIEEGKI 212
|
|
| potG |
PRK11607 |
putrescine ABC transporter ATP-binding subunit PotG; |
6-208 |
2.59e-26 |
|
putrescine ABC transporter ATP-binding subunit PotG;
Pssm-ID: 183226 [Multi-domain] Cd Length: 377 Bit Score: 106.46 E-value: 2.59e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 6 IKDVNKTYDGKtYALKNINLEIKNG-MFGILGRNGSGKSTLMNMLSTILQQSSGTIEINNISLTQTKQIRKMIGYLPQDF 84
Cdd:PRK11607 22 IRNLTKSFDGQ-HAVDDVSLTIYKGeIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPINMMFQSY 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 85 DFYPNMKVKETLHYLGILSGIPKANLKINVAASLEKVNLVEHQNKKVKSLSGGMKKRLGIAQAIIHNPQVLIVDEPTAGL 164
Cdd:PRK11607 101 ALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGAL 180
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 488422644 165 DPEERVRLRHLLSNLAKDKIV--IISTHIVSDIESTCENIAILDKG 208
Cdd:PRK11607 181 DKKLRDRMQLEVVDILERVGVtcVMVTHDQEEAMTMAGRIAIMNRG 226
|
|
| ArtP |
COG4161 |
ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]; |
3-214 |
4.26e-26 |
|
ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443326 [Multi-domain] Cd Length: 242 Bit Score: 103.17 E-value: 4.26e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 3 NIVIKDVNKTYdGKTYALKNINLEIKNG-MFGILGRNGSGKSTLMNMLSTILQQSSGTIEI--------NNISLTQTKQI 73
Cdd:COG4161 2 SIQLKNINCFY-GSHQALFDINLECPSGeTLVLLGPSGAGKSSLLRVLNLLETPDSGQLNIaghqfdfsQKPSEKAIRLL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 74 RKMIGYLPQDFDFYPNMKVKETLHYLGI-LSGIPKANLKINVAASLEKVNLVEHQNKKVKSLSGGMKKRLGIAQAIIHNP 152
Cdd:COG4161 81 RQKVGMVFQQYNLWPHLTVMENLIEAPCkVLGLSKEQAREKAMKLLARLRLTDKADRFPLHLSGGQQQRVAIARALMMEP 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 488422644 153 QVLIVDEPTAGLDPEERVRLRHLLSNLAKDKIV-IISTHIVSDIESTCENIAILDKGVIAYKG 214
Cdd:COG4161 161 QVLLFDEPTAALDPEITAQVVEIIRELSQTGITqVIVTHEVEFARKVASQVVYMEKGRIIEQG 223
|
|
| cbiO |
PRK13648 |
cobalt transporter ATP-binding subunit; Provisional |
2-258 |
4.30e-26 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184207 [Multi-domain] Cd Length: 269 Bit Score: 103.68 E-value: 4.30e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 2 NNIVIKDVNKTYDGKT-YALKNINLEIKNGMF-GILGRNGSGKSTLMNMLSTILQQSSGTIEINNISLTQT--KQIRKMI 77
Cdd:PRK13648 6 SIIVFKNVSFQYQSDAsFTLKDVSFNIPKGQWtSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDnfEKLRKHI 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 78 GYLPQDFDfypNMKVKETLHY---LGILS-GIPKANLKINVAASLEKVNLVEHQNKKVKSLSGGMKKRLGIAQAIIHNPQ 153
Cdd:PRK13648 86 GIVFQNPD---NQFVGSIVKYdvaFGLENhAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPS 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 154 VLIVDEPTAGLDPEERVRLRHLLSNLAKDK-IVIISthIVSDIESTCEN--IAILDKGVIaYKGSIKNLIELSDNKVYEI 230
Cdd:PRK13648 163 VIILDEATSMLDPDARQNLLDLVRKVKSEHnITIIS--ITHDLSEAMEAdhVIVMNKGTV-YKEGTPTEIFDHAEELTRI 239
|
250 260 270
....*....|....*....|....*....|..
gi 488422644 231 TIS---PSKLNQ-LKKNNIFITkiqeYEHLLK 258
Cdd:PRK13648 240 GLDlpfPIKINQmLGHQTSFLT----YEGLVD 267
|
|
| PRK13651 |
PRK13651 |
cobalt transporter ATP-binding subunit; Provisional |
4-256 |
4.88e-26 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184210 [Multi-domain] Cd Length: 305 Bit Score: 104.40 E-value: 4.88e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 4 IVIKDVNKTYDGKT----YALKNINLEIKNGMF-GILGRNGSGKSTLMNMLSTILQQSSGTIEIN--------------- 63
Cdd:PRK13651 3 IKVKNIVKIFNKKLptelKALDNVSVEINQGEFiAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIfkdeknkkktkekek 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 64 -----NISLT------QTKQIRKMIGYLpqdFDFYPNMKVKETLH---YLGILS-GIPKANLKINVAASLEKVNL-VEHQ 127
Cdd:PRK13651 83 vleklVIQKTrfkkikKIKEIRRRVGVV---FQFAEYQLFEQTIEkdiIFGPVSmGVSKEEAKKRAAKYIELVGLdESYL 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 128 NKKVKSLSGGMKKRLGIAQAIIHNPQVLIVDEPTAGLDPEERVRLRHLLSNLAKD-KIVIISTHIVSDIESTCENIAILD 206
Cdd:PRK13651 160 QRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQgKTIILVTHDLDNVLEWTKRTIFFK 239
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*
gi 488422644 207 KGVIAYKGSIKNLieLSDNK-VYEITISPSKL----NQLKKNNIFITKIQEYEHL 256
Cdd:PRK13651 240 DGKIIKDGDTYDI--LSDNKfLIENNMEPPKLlnfvNKLEKKGIDVPKVTSIEEL 292
|
|
| PRK14247 |
PRK14247 |
phosphate ABC transporter ATP-binding protein; Provisional |
1-231 |
5.32e-26 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172735 [Multi-domain] Cd Length: 250 Bit Score: 103.07 E-value: 5.32e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 1 MNNIVIKDVNKTYdGKTYALKNINLEIK-NGMFGILGRNGSGKSTLMNMLSTILQ-----QSSGTI-----EINNISLTQ 69
Cdd:PRK14247 1 MNKIEIRDLKVSF-GQVEVLDGVNLEIPdNTITALMGPSGSGKSTLLRVFNRLIElypeaRVSGEVyldgqDIFKMDVIE 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 70 TKQIRKMIGYLPQDFdfyPNMKVKETLHyLGI-LSGI--PKANLKINVAASLEKVNLVEHQNKKVK----SLSGGMKKRL 142
Cdd:PRK14247 80 LRRRVQMVFQIPNPI---PNLSIFENVA-LGLkLNRLvkSKKELQERVRWALEKAQLWDEVKDRLDapagKLSGGQQQRL 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 143 GIAQAIIHNPQVLIVDEPTAGLDPEERVRLRHLLSNLAKDKIVIISTHIVSDIESTCENIAILDKGVIAYKGSIKnliEL 222
Cdd:PRK14247 156 CIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTR---EV 232
|
....*....
gi 488422644 223 SDNKVYEIT 231
Cdd:PRK14247 233 FTNPRHELT 241
|
|
| PRK11000 |
PRK11000 |
maltose/maltodextrin ABC transporter ATP-binding protein MalK; |
1-214 |
8.01e-26 |
|
maltose/maltodextrin ABC transporter ATP-binding protein MalK;
Pssm-ID: 182893 [Multi-domain] Cd Length: 369 Bit Score: 104.73 E-value: 8.01e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 1 MNNIVIKDVNKTYdGKTYALKNINLEIKNGMFGI-LGRNGSGKSTLMNMLSTILQQSSGTIEINNISLTQTKQIRKMIGY 79
Cdd:PRK11000 1 MASVTLRNVTKAY-GDVVISKDINLDIHEGEFVVfVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGM 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 80 LPQDFDFYPNMKVKETLHYLGILSGIPKANLKINVAASLEKVNLVEHQNKKVKSLSGGMKKRLGIAQAIIHNPQVLIVDE 159
Cdd:PRK11000 80 VFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDE 159
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 488422644 160 PTAGLDPEERVRLRHLLSNLAK--DKIVIISTHIVSDIESTCENIAILDKGVIAYKG 214
Cdd:PRK11000 160 PLSNLDAALRVQMRIEISRLHKrlGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVG 216
|
|
| artP |
PRK11124 |
arginine transporter ATP-binding subunit; Provisional |
4-214 |
9.88e-26 |
|
arginine transporter ATP-binding subunit; Provisional
Pssm-ID: 182980 [Multi-domain] Cd Length: 242 Bit Score: 102.01 E-value: 9.88e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 4 IVIKDVNKTYdGKTYALKNINLEIKNG-MFGILGRNGSGKSTLMNMLSTILQQSSGTIEI--NNISLTQT---KQIRKM- 76
Cdd:PRK11124 3 IQLNGINCFY-GAHQALFDITLDCPQGeTLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIagNHFDFSKTpsdKAIRELr 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 77 --IGYLPQDFDFYPNMKVKETLhylgI-----LSGIPKANLKINVAASLEKVNLVEHQNKKVKSLSGGMKKRLGIAQAII 149
Cdd:PRK11124 82 rnVGMVFQQYNLWPHLTVQQNL----IeapcrVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALM 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 488422644 150 HNPQVLIVDEPTAGLDPEERVRLRHLLSNLAKDKIV-IISTHIVSDIESTCENIAILDKGVIAYKG 214
Cdd:PRK11124 158 MEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITqVIVTHEVEVARKTASRVVYMENGHIVEQG 223
|
|
| ABCC_cytochrome_bd |
cd03247 |
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome ... |
4-214 |
1.52e-25 |
|
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Pssm-ID: 213214 [Multi-domain] Cd Length: 178 Bit Score: 99.69 E-value: 1.52e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 4 IVIKDVNKTYDGKTY-ALKNINLEIKNGM-FGILGRNGSGKSTLMNMLSTILQQSSGTIEIN--NISLTQtKQIRKMIGY 79
Cdd:cd03247 1 LSINNVSFSYPEQEQqVLKNLSLELKQGEkIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDgvPVSDLE-KALSSLISV 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 80 LPQD---FDfypnmkvketlhylgilsgipkANLKINVAaslekvnlvehqnkkvKSLSGGMKKRLGIAQAIIHNPQVLI 156
Cdd:cd03247 80 LNQRpylFD----------------------TTLRNNLG----------------RRFSGGERQRLALARILLQDAPIVL 121
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 488422644 157 VDEPTAGLDPEERVRLRHLLSNLAKDKIVIISTHIVSDIESTcENIAILDKGVIAYKG 214
Cdd:cd03247 122 LDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEHM-DKILFLENGKIIMQG 178
|
|
| YnjD |
COG4136 |
ABC-type uncharacterized transport system YnjBCD, ATPase component [General function ... |
20-196 |
1.56e-25 |
|
ABC-type uncharacterized transport system YnjBCD, ATPase component [General function prediction only];
Pssm-ID: 443311 [Multi-domain] Cd Length: 211 Bit Score: 100.63 E-value: 1.56e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 20 LKNINLEIKNG-MFGILGRNGSGKSTLMNMLSTILQ---QSSGTIEINNISLTQTKQIRKMIGYLPQDFDFYPNMKVKET 95
Cdd:COG4136 17 LAPLSLTVAPGeILTLMGPSGSGKSTLLAAIAGTLSpafSASGEVLLNGRRLTALPAEQRRIGILFQDDLLFPHLSVGEN 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 96 LHYlGILSGIPKANLKINVAASLEKVNLVEHQNKKVKSLSGGMKKRLGIAQAIIHNPQVLIVDEPTAGLDPEERVRLRHL 175
Cdd:COG4136 97 LAF-ALPPTIGRAQRRARVEQALEEAGLAGFADRDPATLSGGQRARVALLRALLAEPRALLLDEPFSKLDAALRAQFREF 175
|
170 180
....*....|....*....|...
gi 488422644 176 LSNLAKDK--IVIISTHIVSDIE 196
Cdd:COG4136 176 VFEQIRQRgiPALLVTHDEEDAP 198
|
|
| PLN03211 |
PLN03211 |
ABC transporter G-25; Provisional |
31-190 |
1.92e-25 |
|
ABC transporter G-25; Provisional
Pssm-ID: 215634 [Multi-domain] Cd Length: 659 Bit Score: 105.73 E-value: 1.92e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 31 MFGILGRNGSGKSTLMNMLSTILQQSS--GTIEINNISLTqtKQIRKMIGYLPQDFDFYPNMKVKETLHYLGILSgIPKA 108
Cdd:PLN03211 96 ILAVLGPSGSGKSTLLNALAGRIQGNNftGTILANNRKPT--KQILKRTGFVTQDDILYPHLTVRETLVFCSLLR-LPKS 172
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 109 ---NLKINVAAS-LEKVNLVEHQNKKV-----KSLSGGMKKRLGIAQAIIHNPQVLIVDEPTAGLDPEERVRLRHLLSNL 179
Cdd:PLN03211 173 ltkQEKILVAESvISELGLTKCENTIIgnsfiRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSL 252
|
170
....*....|..
gi 488422644 180 A-KDKIVIISTH 190
Cdd:PLN03211 253 AqKGKTIVTSMH 264
|
|
| PRK10895 |
PRK10895 |
lipopolysaccharide ABC transporter ATP-binding protein; Provisional |
1-227 |
2.05e-25 |
|
lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Pssm-ID: 182817 [Multi-domain] Cd Length: 241 Bit Score: 101.12 E-value: 2.05e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 1 MNNIVIKDVNKTYDGKTyALKNINLEIKNG-MFGILGRNGSGKSTLMNMLSTILQQSSGTIEIN--NISLTQT-KQIRKM 76
Cdd:PRK10895 1 MATLTAKNLAKAYKGRR-VVEDVSLTVNSGeIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDdeDISLLPLhARARRG 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 77 IGYLPQDFDFYPNMKVKETLH-YLGILSGIPKANLKINVAASLEKVNLVEHQNKKVKSLSGGMKKRLGIAQAIIHNPQVL 155
Cdd:PRK10895 80 IGYLPQEASIFRRLSVYDNLMaVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFI 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 488422644 156 IVDEPTAGLDPEERVRLRHLLSNLAKDKI-VIISTHIVSDIESTCENIAILDKGVIAYKGSIKNLieLSDNKV 227
Cdd:PRK10895 160 LLDEPFAGVDPISVIDIKRIIEHLRDSGLgVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEI--LQDEHV 230
|
|
| ABC_CysA_sulfate_importer |
cd03296 |
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex ... |
4-215 |
2.12e-25 |
|
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213263 [Multi-domain] Cd Length: 239 Bit Score: 101.26 E-value: 2.12e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 4 IVIKDVNKTYDGKTyALKNINLEIKNG-MFGILGRNGSGKSTLMNMLSTILQQSSGTIEINNISLTQTKQIRKMIGYLPQ 82
Cdd:cd03296 3 IEVRNVSKRFGDFV-ALDDVSLDIPSGeLVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGFVFQ 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 83 DFDFYPNMKVKET----LHYLGILSGIPKANLKINVAASLEKVNLVEHQNKKVKSLSGGMKKRLGIAQAIIHNPQVLIVD 158
Cdd:cd03296 82 HYALFRHMTVFDNvafgLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLD 161
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 159 EPTAGLDPEERVRLRHLLSNLaKDKIVIISTHIVSDIESTCE---NIAILDKGVIAYKGS 215
Cdd:cd03296 162 EPFGALDAKVRKELRRWLRRL-HDELHVTTVFVTHDQEEALEvadRVVVMNKGRIEQVGT 220
|
|
| ntrCD |
TIGR01184 |
nitrate transport ATP-binding subunits C and D; This model describes the ATP binding subunits ... |
20-216 |
2.18e-25 |
|
nitrate transport ATP-binding subunits C and D; This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. [Transport and binding proteins, Anions, Transport and binding proteins, Other]
Pssm-ID: 130252 [Multi-domain] Cd Length: 230 Bit Score: 101.00 E-value: 2.18e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 20 LKNINLEIKNGMF-GILGRNGSGKSTLMNMLSTILQQSSGTIEINNISLTQTKQIRkMIGYlpQDFDFYPNMKVKETLhY 98
Cdd:TIGR01184 1 LKGVNLTIQQGEFiSLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDR-MVVF--QNYSLLPWLTVRENI-A 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 99 LGI---LSGIPKANLKINVAASLEKVNLVEHQNKKVKSLSGGMKKRLGIAQAIIHNPQVLIVDEPTAGLDPEERVRLRHL 175
Cdd:TIGR01184 77 LAVdrvLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEE 156
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 488422644 176 LSNLAKDK--IVIISTHIVSDIESTCENIAILDKGVIAYKGSI 216
Cdd:TIGR01184 157 LMQIWEEHrvTVLMVTHDVDEALLLSDRVVMLTNGPAANIGQI 199
|
|
| ABCC_Hemolysin |
cd03252 |
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a ... |
18-220 |
3.95e-25 |
|
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Pssm-ID: 213219 [Multi-domain] Cd Length: 237 Bit Score: 100.25 E-value: 3.95e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 18 YALKNINLEIKNG-MFGILGRNGSGKSTLMNMLSTILQQSSGTIEI--NNISLTQTKQIRKMIGYLPQDFDFYpNMKVKE 94
Cdd:cd03252 16 VILDNISLRIKPGeVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVdgHDLALADPAWLRRQVGVVLQENVLF-NRSIRD 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 95 TlhylgILSGIPKANL-KINVAASLEKVN-----LVEHQNKKV----KSLSGGMKKRLGIAQAIIHNPQVLIVDEPTAGL 164
Cdd:cd03252 95 N-----IALADPGMSMeRVIEAAKLAGAHdfiseLPEGYDTIVgeqgAGLSGGQRQRIAIARALIHNPRILIFDEATSAL 169
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 488422644 165 DPE-ERVRLRHlLSNLAKDKIVIISTHIVSDIEsTCENIAILDKGVIAYKGSIKNLI 220
Cdd:cd03252 170 DYEsEHAIMRN-MHDICAGRTVIIIAHRLSTVK-NADRIIVMEKGRIVEQGSHDELL 224
|
|
| rim_protein |
TIGR01257 |
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim ... |
19-215 |
5.44e-25 |
|
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. [Transport and binding proteins, Other]
Pssm-ID: 130324 [Multi-domain] Cd Length: 2272 Bit Score: 105.10 E-value: 5.44e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 19 ALKNINLEI-KNGMFGILGRNGSGKSTLMNMLSTILQQSSGTIEINNISL-TQTKQIRKMIGYLPQDFDFYPNMKVKETL 96
Cdd:TIGR01257 945 AVDRLNITFyENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIeTNLDAVRQSLGMCPQHNILFHHLTVAEHI 1024
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 97 HYLGILSGIPKANLKINVAASLEKVNLVEHQNKKVKSLSGGMKKRLGIAQAIIHNPQVLIVDEPTAGLDPEERVRLRHLL 176
Cdd:TIGR01257 1025 LFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLL 1104
|
170 180 190
....*....|....*....|....*....|....*....
gi 488422644 177 SNLAKDKIVIISTHIVSDIESTCENIAILDKGVIAYKGS 215
Cdd:TIGR01257 1105 LKYRSGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGT 1143
|
|
| PRK15056 |
PRK15056 |
manganese/iron ABC transporter ATP-binding protein; |
4-211 |
5.54e-25 |
|
manganese/iron ABC transporter ATP-binding protein;
Pssm-ID: 185016 [Multi-domain] Cd Length: 272 Bit Score: 100.73 E-value: 5.54e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 4 IVIKDVNKTYDGKTYALKNINLEIKNGMFGIL-GRNGSGKSTLMNMLSTILQQSSGTIEINNISLTQTKQiRKMIGYLPQ 82
Cdd:PRK15056 7 IVVNDVTVTWRNGHTALRDASFTVPGGSIAALvGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQ-KNLVAYVPQ 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 83 --DFDFYPNMKVKETLH-----YLGILSgIPKANLKINVAASLEKVNLVEHQNKKVKSLSGGMKKRLGIAQAIIHNPQVL 155
Cdd:PRK15056 86 seEVDWSFPVLVEDVVMmgrygHMGWLR-RAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVI 164
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 488422644 156 IVDEPTAGLDPEERVRLRHLLSNL-AKDKIVIISTHIVSDIESTCENIAILDKGVIA 211
Cdd:PRK15056 165 LLDEPFTGVDVKTEARIISLLRELrDEGKTMLVSTHNLGSVTEFCDYTVMVKGTVLA 221
|
|
| cbiO |
PRK13646 |
energy-coupling factor transporter ATPase; |
4-243 |
6.15e-25 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184205 [Multi-domain] Cd Length: 286 Bit Score: 101.01 E-value: 6.15e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 4 IVIKDVNKTYDGKT----YALKNINLEIKNGMF-GILGRNGSGKSTLMNMLSTILQQSSGTIEINNISLT-QTK-----Q 72
Cdd:PRK13646 3 IRFDNVSYTYQKGTpyehQAIHDVNTEFEQGKYyAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITIThKTKdkyirP 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 73 IRKMIGYLPQdfdfYPNMKVKETLHYLGILSGiPKaNLKINvaasLEKVNLVEHQ-------NKKVKSLS-----GGMKK 140
Cdd:PRK13646 83 VRKRIGMVFQ----FPESQLFEDTVEREIIFG-PK-NFKMN----LDEVKNYAHRllmdlgfSRDVMSQSpfqmsGGQMR 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 141 RLGIAQAIIHNPQVLIVDEPTAGLDPEERVRLRHLLSNLAKD--KIVIISTHIVSDIESTCENIAILDKGVIAYKGSIKN 218
Cdd:PRK13646 153 KIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDenKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKE 232
|
250 260
....*....|....*....|....*
gi 488422644 219 LIElSDNKVYEITISPSKLNQLKKN 243
Cdd:PRK13646 233 LFK-DKKKLADWHIGLPEIVQLQYD 256
|
|
| ABCC_MRP_domain2 |
cd03244 |
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C ... |
3-211 |
7.25e-25 |
|
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213211 [Multi-domain] Cd Length: 221 Bit Score: 99.11 E-value: 7.25e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 3 NIVIKDVNKTY-DGKTYALKNINLEIKNGM-FGILGRNGSGKSTLMNMLSTILQQSSGTIEINNISLTQ--TKQIRKMIG 78
Cdd:cd03244 2 DIEFKNVSLRYrPNLPPVLKNISFSIKPGEkVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKigLHDLRSRIS 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 79 YLPQD--------------FDFYPNMKVKETLHylgilsgipKANLKINVAASLEKVNLVEHQNKkvKSLSGGMKKRLGI 144
Cdd:cd03244 82 IIPQDpvlfsgtirsnldpFGEYSDEELWQALE---------RVGLKEFVESLPGGLDTVVEEGG--ENLSVGQRQLLCL 150
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 488422644 145 AQAIIHNPQVLIVDEPTAGLDPEERVRLRHLLSNLAKDKIVIISTHIVSDIeSTCENIAILDKGVIA 211
Cdd:cd03244 151 ARALLRKSKILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTI-IDSDRILVLDKGRVV 216
|
|
| fbpC |
PRK11432 |
ferric ABC transporter ATP-binding protein; |
1-219 |
1.33e-24 |
|
ferric ABC transporter ATP-binding protein;
Pssm-ID: 183133 [Multi-domain] Cd Length: 351 Bit Score: 101.33 E-value: 1.33e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 1 MNN--IVIKDVNKTYdGKTYALKNINLEIKNG-MFGILGRNGSGKSTLMNMLSTILQQSSGTIEINNISLTQTKQIRKMI 77
Cdd:PRK11432 2 TQKnfVVLKNITKRF-GSNTVIDNLNLTIKQGtMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 78 GYLPQDFDFYPNMKVKETLHYLGILSGIPKANLKINVAASLEKVNLVEHQNKKVKSLSGGMKKRLGIAQAIIHNPQVLIV 157
Cdd:PRK11432 81 CMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLF 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 488422644 158 DEPTAGLDPEERVRLRHLLSNLAKdKIVIIS---THIVSDIESTCENIAILDKGVIAYKGSIKNL 219
Cdd:PRK11432 161 DEPLSNLDANLRRSMREKIRELQQ-QFNITSlyvTHDQSEAFAVSDTVIVMNKGKIMQIGSPQEL 224
|
|
| CydD |
TIGR02857 |
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family ... |
4-190 |
1.35e-24 |
|
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Pssm-ID: 274323 [Multi-domain] Cd Length: 529 Bit Score: 103.14 E-value: 1.35e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 4 IVIKDVNKTYDGKTYALKNINLEIKNG-MFGILGRNGSGKSTLMNMLSTILQQSSGTIEINNISLTQ--TKQIRKMIGYL 80
Cdd:TIGR02857 322 LEFSGVSVAYPGRRPALRPVSFTVPPGeRVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADadADSWRDQIAWV 401
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 81 PQdfdfYPnmkvketlhylGILSGIPKANLKI--------NVAASLEKVNLVE-------HQNKKVKS----LSGGMKKR 141
Cdd:TIGR02857 402 PQ----HP-----------FLFAGTIAENIRLarpdasdaEIREALERAGLDEfvaalpqGLDTPIGEggagLSGGQAQR 466
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 488422644 142 LGIAQAIIHNPQVLIVDEPTAGLDPEERVRLRHLLSNLAKDKIVIISTH 190
Cdd:TIGR02857 467 LALARAFLRDAPLLLLDEPTAHLDAETEAEVLEALRALAQGRTVLLVTH 515
|
|
| rim_protein |
TIGR01257 |
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim ... |
6-267 |
2.89e-24 |
|
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. [Transport and binding proteins, Other]
Pssm-ID: 130324 [Multi-domain] Cd Length: 2272 Bit Score: 102.78 E-value: 2.89e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 6 IKDVNKTYDGKTY-ALKNINLEIKNG-MFGILGRNGSGKSTLMNMLSTILQQSSGTIEINNIS-LTQTKQIRKMIGYLPQ 82
Cdd:TIGR01257 1940 LNELTKVYSGTSSpAVDRLCVGVRPGeCFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSiLTNISDVHQNMGYCPQ 2019
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 83 dFDFYPNMKV-KETLHYLGILSGIPKANLKINVAASLEKVNLVEHQNKKVKSLSGGMKKRLGIAQAIIHNPQVLIVDEPT 161
Cdd:TIGR01257 2020 -FDAIDDLLTgREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPT 2098
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 162 AGLDPEERVRLRH-LLSNLAKDKIVIISTHIVSDIESTCENIAILDKGVIAYKGSIKNL-IELSDNKVYEITISPSK--- 236
Cdd:TIGR01257 2099 TGMDPQARRMLWNtIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHLkSKFGDGYIVTMKIKSPKddl 2178
|
250 260 270
....*....|....*....|....*....|....*...
gi 488422644 237 ------LNQLKKNNiFITKIQEYEHLLKVRF-VSESNL 267
Cdd:TIGR01257 2179 lpdlnpVEQFFQGN-FPGSVQRERHYNMLQFqVSSSSL 2215
|
|
| ABC_MTABC3_MDL1_MDL2 |
cd03249 |
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 ... |
4-223 |
3.49e-24 |
|
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Pssm-ID: 213216 [Multi-domain] Cd Length: 238 Bit Score: 97.61 E-value: 3.49e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 4 IVIKDVNKTYDGK--TYALKNINLEIKNGMF-GILGRNGSGKSTLMNMLSTILQQSSGTIEIN--NISLTQTKQIRKMIG 78
Cdd:cd03249 1 IEFKNVSFRYPSRpdVPILKGLSLTIPPGKTvALVGSSGCGKSTVVSLLERFYDPTSGEILLDgvDIRDLNLRWLRSQIG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 79 YLPQDFDFYpNMKVKETLHYlgilsGIPKANLKINVAASLEK------VNLVEHQNKKV----KSLSGGMKKRLGIAQAI 148
Cdd:cd03249 81 LVSQEPVLF-DGTIAENIRY-----GKPDATDEEVEEAAKKAnihdfiMSLPDGYDTLVgergSQLSGGQKQRIAIARAL 154
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 488422644 149 IHNPQVLIVDEPTAGLDPEERVRLRHLLSNLAKDKIVIISTHIVSDIeSTCENIAILDKGVIAYKGSIKNLIELS 223
Cdd:cd03249 155 LRNPKILLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTI-RNADLIAVLQNGQVVEQGTHDELMAQK 228
|
|
| ugpC |
PRK11650 |
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC; |
1-173 |
8.00e-24 |
|
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC;
Pssm-ID: 236947 [Multi-domain] Cd Length: 356 Bit Score: 99.15 E-value: 8.00e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 1 MNNIVIKDVNKTYDGKTYALKNINLEIKNGMF-GILGRNGSGKSTLMNM---LSTIlqqSSGTIEINNISLTQTKQIRKM 76
Cdd:PRK11650 1 MAGLKLQAVRKSYDGKTQVIKGIDLDVADGEFiVLVGPSGCGKSTLLRMvagLERI---TSGEIWIGGRVVNELEPADRD 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 77 IGYLPQDFDFYPNMKVKETLHY-LGIlSGIPKANLKINVAASLEKVNLVEHQNKKVKSLSGGMKKRLGIAQAIIHNPQVL 155
Cdd:PRK11650 78 IAMVFQNYALYPHMSVRENMAYgLKI-RGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVF 156
|
170
....*....|....*...
gi 488422644 156 IVDEPTAGLDPEERVRLR 173
Cdd:PRK11650 157 LFDEPLSNLDAKLRVQMR 174
|
|
| PRK13633 |
PRK13633 |
energy-coupling factor transporter ATPase; |
2-219 |
9.86e-24 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237453 [Multi-domain] Cd Length: 280 Bit Score: 97.47 E-value: 9.86e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 2 NNIVIKDVNKTYDGKTYALKNINLEIKNGMF-GILGRNGSGKSTLMNMLSTILQQSSGTIEINNISLTQTK---QIRKMI 77
Cdd:PRK13633 8 KNVSYKYESNEESTEKLALDDVNLEVKKGEFlVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEEnlwDIRNKA 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 78 GYLPQDFD-------------FYPnmkvkETLhylgilsGIPKANLKINVAASLEKVNLVEHQNKKVKSLSGGMKKRLGI 144
Cdd:PRK13633 88 GMVFQNPDnqivativeedvaFGP-----ENL-------GIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAI 155
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 488422644 145 AQAIIHNPQVLIVDEPTAGLDPEERVRLRHLLSNLAKDK--IVIISTHIVSDIeSTCENIAILDKGVIAYKGSIKNL 219
Cdd:PRK13633 156 AGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYgiTIILITHYMEEA-VEADRIIVMDSGKVVMEGTPKEI 231
|
|
| ABC_ThiQ_thiamine_transporter |
cd03298 |
ATP-binding cassette domain of the thiamine transport system; Part of the ... |
34-214 |
1.94e-23 |
|
ATP-binding cassette domain of the thiamine transport system; Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213265 [Multi-domain] Cd Length: 211 Bit Score: 95.25 E-value: 1.94e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 34 ILGRNGSGKSTLMNMLSTILQQSSGTIEINNISLTQTKQIRKMIGYLPQDFDFYPNMKVKETLHyLGILSGipkanLKIN 113
Cdd:cd03298 29 IVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVG-LGLSPG-----LKLT 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 114 ------VAASLEKVNLVEHQNKKVKSLSGGMKKRLGIAQAIIHNPQVLIVDEPTAGLDPEERVRLRHLLSNLAKDK--IV 185
Cdd:cd03298 103 aedrqaIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETkmTV 182
|
170 180
....*....|....*....|....*....
gi 488422644 186 IISTHIVSDIESTCENIAILDKGVIAYKG 214
Cdd:cd03298 183 LMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211
|
|
| tauB |
PRK11248 |
taurine ABC transporter ATP-binding subunit; |
13-196 |
5.20e-23 |
|
taurine ABC transporter ATP-binding subunit;
Pssm-ID: 183056 [Multi-domain] Cd Length: 255 Bit Score: 95.15 E-value: 5.20e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 13 YDGKTyALKNINLEIKNG-MFGILGRNGSGKSTLMNMLSTILQQSSGTIEINNISLTQTKQIRkmiGYLPQDFDFYPNMK 91
Cdd:PRK11248 11 YGGKP-ALEDINLTLESGeLLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAER---GVVFQNEGLLPWRN 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 92 VKETLHYLGILSGIPKANLKINVAASLEKVNLVEHQNKKVKSLSGGMKKRLGIAQAIIHNPQVLIVDEPTAGLDPEERVR 171
Cdd:PRK11248 87 VQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQ 166
|
170 180
....*....|....*....|....*..
gi 488422644 172 LRHLLSNLAKD--KIVIISTHivsDIE 196
Cdd:PRK11248 167 MQTLLLKLWQEtgKQVLLITH---DIE 190
|
|
| cbiO |
PRK13641 |
energy-coupling factor transporter ATPase; |
4-208 |
6.73e-23 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237456 [Multi-domain] Cd Length: 287 Bit Score: 95.28 E-value: 6.73e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 4 IVIKDVNKTYDGKT----YALKNINLEIKNGMF-GILGRNGSGKSTLMNMLSTILQQSSGTIEINNISLT-QT-----KQ 72
Cdd:PRK13641 3 IKFENVDYIYSPGTpmekKGLDNISFELEEGSFvALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITpETgnknlKK 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 73 IRKMIGYLpqdFDFYPNMKVKETLH---YLGILS-GIPKANLKINVAASLEKVNLVEH-QNKKVKSLSGGMKKRLGIAQA 147
Cdd:PRK13641 83 LRKKVSLV---FQFPEAQLFENTVLkdvEFGPKNfGFSEDEAKEKALKWLKKVGLSEDlISKSPFELSGGQMRRVAIAGV 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 488422644 148 IIHNPQVLIVDEPTAGLDPEERVRLRHLLSNLAKD-KIVIISTHIVSDIESTCENIAILDKG 208
Cdd:PRK13641 160 MAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAgHTVILVTHNMDDVAEYADDVLVLEHG 221
|
|
| AztA |
NF040873 |
zinc ABC transporter ATP-binding protein AztA; |
13-190 |
9.70e-23 |
|
zinc ABC transporter ATP-binding protein AztA;
Pssm-ID: 468810 [Multi-domain] Cd Length: 191 Bit Score: 92.68 E-value: 9.70e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 13 YDGKTyALKNINLEIKNG-MFGILGRNGSGKSTLMNMLSTILQQSSGTIeinnisltqTKQIRKMIGYLPQ---DFDFYP 88
Cdd:NF040873 2 YGGRP-VLHGVDLTIPAGsLTAVVGPNGSGKSTLLKVLAGVLRPTSGTV---------RRAGGARVAYVPQrseVPDSLP 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 89 nMKVKETLHyLGI-----LSGIPKANLKINVAASLEKVNLVEHQNKKVKSLSGGMKKRLGIAQAIIHNPQVLIVDEPTAG 163
Cdd:NF040873 72 -LTVRDLVA-MGRwarrgLWRRLTRDDRAAVDDALERVGLADLAGRQLGELSGGQRQRALLAQGLAQEADLLLLDEPTTG 149
|
170 180
....*....|....*....|....*...
gi 488422644 164 LDPEERVRLRHLLSNLAKDKI-VIISTH 190
Cdd:NF040873 150 LDAESRERIIALLAEEHARGAtVVVVTH 177
|
|
| CydC |
TIGR02868 |
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family ... |
4-190 |
1.74e-22 |
|
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Pssm-ID: 274331 [Multi-domain] Cd Length: 530 Bit Score: 97.05 E-value: 1.74e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 4 IVIKDVNKTYDGKTYALKNINLEIKNG-MFGILGRNGSGKSTLMNMLSTILQQSSGTIEINNISLTQTKQ--IRKMIGYL 80
Cdd:TIGR02868 335 LELRDLSAGYPGAPPVLDGVSLDLPPGeRVAILGPSGSGKSTLLATLAGLLDPLQGEVTLDGVPVSSLDQdeVRRRVSVC 414
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 81 PQD---FDfypnMKVKETLhylgiLSGIPKANLKiNVAASLEKVNLVEH-------QNKKV----KSLSGGMKKRLGIAQ 146
Cdd:TIGR02868 415 AQDahlFD----TTVRENL-----RLARPDATDE-ELWAALERVGLADWlralpdgLDTVLgeggARLSGGERQRLALAR 484
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 488422644 147 AIIHNPQVLIVDEPTAGLDPEERVRLRHLLSNLAKDKIVIISTH 190
Cdd:TIGR02868 485 ALLADAPILLLDEPTEHLDAETADELLEDLLAALSGRTVVLITH 528
|
|
| PRK10851 |
PRK10851 |
sulfate/thiosulfate ABC transporter ATP-binding protein CysA; |
3-216 |
2.21e-22 |
|
sulfate/thiosulfate ABC transporter ATP-binding protein CysA;
Pssm-ID: 182778 [Multi-domain] Cd Length: 353 Bit Score: 95.15 E-value: 2.21e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 3 NIVIKDVNKTYdGKTYALKNINLEIKNG-MFGILGRNGSGKSTLMNMLSTILQQSSGTIEINNISLTQTKQIRKMIGYLP 81
Cdd:PRK10851 2 SIEIANIKKSF-GRTQVLNDISLDIPSGqMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFVF 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 82 QDFDFYPNMKVKETLHYlGiLSGIPK------ANLKINVAASLEKVNLVEHQNKKVKSLSGGMKKRLGIAQAIIHNPQVL 155
Cdd:PRK10851 81 QHYALFRHMTVFDNIAF-G-LTVLPRrerpnaAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQIL 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 488422644 156 IVDEPTAGLDPEERVRLRHLLSNLaKDKIVIISTHIVSDIEstcENIAILDKGVIAYKGSI 216
Cdd:PRK10851 159 LLDEPFGALDAQVRKELRRWLRQL-HEELKFTSVFVTHDQE---EAMEVADRVVVMSQGNI 215
|
|
| PRK10908 |
PRK10908 |
cell division ATP-binding protein FtsE; |
4-208 |
2.42e-22 |
|
cell division ATP-binding protein FtsE;
Pssm-ID: 182829 [Multi-domain] Cd Length: 222 Bit Score: 92.63 E-value: 2.42e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 4 IVIKDVNKTYDGKTYALKNINLEIKNGMFGIL-GRNGSGKSTLMNMLSTILQQSSGTI-----EINNISLTQTKQIRKMI 77
Cdd:PRK10908 2 IRFEHVSKAYLGGRQALQGVTFHMRPGEMAFLtGHSGAGKSTLLKLICGIERPSAGKIwfsghDITRLKNREVPFLRRQI 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 78 GYLPQDFDFYPNMKVKETLHYLGILSGIPKANLKINVAASLEKVNLVEHQNKKVKSLSGGMKKRLGIAQAIIHNPQVLIV 157
Cdd:PRK10908 82 GMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLA 161
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 488422644 158 DEPTAGLDPEERVRLRHLLSNLAKDKI-VIISTHIVSDIESTCENIAILDKG 208
Cdd:PRK10908 162 DEPTGNLDDALSEGILRLFEEFNRVGVtVLMATHDIGLISRRSYRMLTLSDG 213
|
|
| PstB |
COG1117 |
ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
4-190 |
2.67e-22 |
|
ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440734 [Multi-domain] Cd Length: 258 Bit Score: 93.18 E-value: 2.67e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 4 IVIKDVNKTYdGKTYALKNINLEI-KNGMFGILGRNGSGKSTL---MN-MLSTILQQS-SGTIEINNISLTQTK----QI 73
Cdd:COG1117 12 IEVRNLNVYY-GDKQALKDINLDIpENKVTALIGPSGCGKSTLlrcLNrMNDLIPGARvEGEILLDGEDIYDPDvdvvEL 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 74 RKMIGYLPQdfdfYPN---MKVKETLHYLGILSGI-PKANLKINVAASLEKVNLVEHqnkkVK--------SLSGGMKKR 141
Cdd:COG1117 91 RRRVGMVFQ----KPNpfpKSIYDNVAYGLRLHGIkSKSELDEIVEESLRKAALWDE----VKdrlkksalGLSGGQQQR 162
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 488422644 142 LGIAQAIIHNPQVLIVDEPTAGLDPEERVRLRHLLSNLAKDKIVIISTH 190
Cdd:COG1117 163 LCIARALAVEPEVLLMDEPTSALDPISTAKIEELILELKKDYTIVIVTH 211
|
|
| cbiO |
PRK13632 |
cobalt transporter ATP-binding subunit; Provisional |
4-258 |
3.82e-22 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237452 [Multi-domain] Cd Length: 271 Bit Score: 93.13 E-value: 3.82e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 4 IVIKDVNKTYDG-KTYALKNINLEIKNGMF-GILGRNGSGKSTLMNMLSTILQQSSGTIEINNISLTQT--KQIRKMIGY 79
Cdd:PRK13632 8 IKVENVSFSYPNsENNALKNVSFEINEGEYvAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKEnlKEIRKKIGI 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 80 LPQDFDfypNMKVKETLHYlGILSG-----IPKANLKINVAASLEKVNLVEHQNKKVKSLSGGMKKRLGIAQAIIHNPQV 154
Cdd:PRK13632 88 IFQNPD---NQFIGATVED-DIAFGlenkkVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEI 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 155 LIVDEPTAGLDPEERVRLRHLLSNLAK--DKIVIISTHivsDIEST--CENIAILDKGVIAYKGSIKNLieLSDNKVYEI 230
Cdd:PRK13632 164 IIFDESTSMLDPKGKREIKKIMVDLRKtrKKTLISITH---DMDEAilADKVIVFSEGKLIAQGKPKEI--LNNKEILEK 238
|
250 260 270
....*....|....*....|....*....|..
gi 488422644 231 TI--SP--SKLNQLKKNnifITKIQEYEHLLK 258
Cdd:PRK13632 239 AKidSPfiYKLSKKLKG---IDPTYNEEELIE 267
|
|
| ccmA |
TIGR01189 |
heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein ... |
15-191 |
4.07e-22 |
|
heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]
Pssm-ID: 273491 [Multi-domain] Cd Length: 198 Bit Score: 91.27 E-value: 4.07e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 15 GKTYALKNINLEIKNG-MFGILGRNGSGKSTLMNMLSTILQQSSGTIEINNISL-TQTKQIRKMIGYLPQDFDFYPNMKV 92
Cdd:TIGR01189 11 GERMLFEGLSFTLNAGeALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTPLaEQRDEPHENILYLGHLPGLKPELSA 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 93 KETLHYLGILSGipkaNLKINVAASLEKVNLVEHQNKKVKSLSGGMKKRLGIAQAIIHNPQVLIVDEPTAGLDPEERVRL 172
Cdd:TIGR01189 91 LENLHFWAAIHG----GAQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRRPLWILDEPTTALDKAGVALL 166
|
170 180
....*....|....*....|
gi 488422644 173 RHLL-SNLAKDKIVIISTHI 191
Cdd:TIGR01189 167 AGLLrAHLARGGIVLLTTHQ 186
|
|
| PRK09700 |
PRK09700 |
D-allose ABC transporter ATP-binding protein AlsA; |
4-219 |
4.62e-22 |
|
D-allose ABC transporter ATP-binding protein AlsA;
Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 95.62 E-value: 4.62e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 4 IVIKDVNKTYdGKTYALKNINLEIKNG-MFGILGRNGSGKSTLMNMLSTILQQSSGTIEINNIS---LTQTKQIRKMIGY 79
Cdd:PRK09700 6 ISMAGIGKSF-GPVHALKSVNLTVYPGeIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINynkLDHKLAAQLGIGI 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 80 LPQDFDFYPNMKVKETLhYLGILS-----GIPK---ANLKINVAASLEKVNLVEHQNKKVKSLSGGMKKRLGIAQAIIHN 151
Cdd:PRK09700 85 IYQELSVIDELTVLENL-YIGRHLtkkvcGVNIidwREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLD 163
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 152 PQVLIVDEPTAGLDPEERVRLRHLLSNLAKD--KIVIIStHIVSDIESTCENIAILDKGVIAYKGSIKNL 219
Cdd:PRK09700 164 AKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEgtAIVYIS-HKLAEIRRICDRYTVMKDGSSVCSGMVSDV 232
|
|
| PRK11176 |
PRK11176 |
lipid A ABC transporter ATP-binding protein/permease MsbA; |
3-228 |
9.92e-22 |
|
lipid A ABC transporter ATP-binding protein/permease MsbA;
Pssm-ID: 183016 [Multi-domain] Cd Length: 582 Bit Score: 94.70 E-value: 9.92e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 3 NIVIKDVNKTYDGK-TYALKNINLEIKNG-MFGILGRNGSGKSTLMNMLSTILQQSSGTIEINNISLTQTK--QIRKMIG 78
Cdd:PRK11176 341 DIEFRNVTFTYPGKeVPALRNINFKIPAGkTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTlaSLRNQVA 420
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 79 YLPQDFDFYpNMKVKETLHYL--GILS--GIPKAnlkINVAASLEKVNLVEHQNKKV-----KSLSGGMKKRLGIAQAII 149
Cdd:PRK11176 421 LVSQNVHLF-NDTIANNIAYArtEQYSreQIEEA---ARMAYAMDFINKMDNGLDTVigengVLLSGGQRQRIAIARALL 496
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 488422644 150 HNPQVLIVDEPTAGLDPEERVRLRHLLSNLAKDKIVIISTHIVSDIESTCEnIAILDKGVIAYKGSIKNLIELsdNKVY 228
Cdd:PRK11176 497 RDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADE-ILVVEDGEIVERGTHAELLAQ--NGVY 572
|
|
| type_I_sec_PrtD |
TIGR01842 |
type I secretion system ABC transporter, PrtD family; Type I protein secretion is a system in ... |
15-211 |
1.29e-21 |
|
type I secretion system ABC transporter, PrtD family; Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 200134 [Multi-domain] Cd Length: 544 Bit Score: 94.34 E-value: 1.29e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 15 GKTYALKNINLEIKNGMF-GILGRNGSGKSTLMNMLSTILQQSSGTIEINNISLTQ--TKQIRKMIGYLPQDFDFYPnmk 91
Cdd:TIGR01842 329 GKKPTLRGISFSLQAGEAlAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQwdRETFGKHIGYLPQDVELFP--- 405
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 92 vketlhylgilsGIPKANL----------KINVAASLEKV-----NLVEHQNKKV----KSLSGGMKKRLGIAQAIIHNP 152
Cdd:TIGR01842 406 ------------GTVAENIarfgenadpeKIIEAAKLAGVhelilRLPDGYDTVIgpggATLSGGQRQRIALARALYGDP 473
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 153 QVLIVDEPTAGLDPEERVRLRHLLSNLAKDKI-VIISTHIVSDIESTcENIAILDKGVIA 211
Cdd:TIGR01842 474 KLVVLDEPNSNLDEEGEQALANAIKALKARGItVVVITHRPSLLGCV-DKILVLQDGRIA 532
|
|
| modC_ABC |
TIGR02142 |
molybdenum ABC transporter, ATP-binding protein; This model represents the ATP-binding ... |
17-219 |
1.47e-21 |
|
molybdenum ABC transporter, ATP-binding protein; This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. [Transport and binding proteins, Anions]
Pssm-ID: 131197 [Multi-domain] Cd Length: 354 Bit Score: 92.87 E-value: 1.47e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 17 TYALKnINLEIK-NGMFGILGRNGSGKSTLMNMLSTILQQSSGTIEINNISLTQTKQI------RKMIGYLPQDFDFYPN 89
Cdd:TIGR02142 11 DFSLD-ADFTLPgQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGiflppeKRRIGYVFQEARLFPH 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 90 MKVKETLHYlgilsGIPKANLK---INVAASLEKVNLVEHQNKKVKSLSGGMKKRLGIAQAIIHNPQVLIVDEPTAGLDP 166
Cdd:TIGR02142 90 LSVRGNLRY-----GMKRARPSerrISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDD 164
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 488422644 167 EERVRLRHLLSNLAKD---KIVIIStHIVSDIESTCENIAILDKGVIAYKGSIKNL 219
Cdd:TIGR02142 165 PRKYEILPYLERLHAEfgiPILYVS-HSLQEVLRLADRVVVLEDGRVAAAGPIAEV 219
|
|
| PRK10619 |
PRK10619 |
histidine ABC transporter ATP-binding protein HisP; |
2-214 |
1.51e-21 |
|
histidine ABC transporter ATP-binding protein HisP;
Pssm-ID: 182592 [Multi-domain] Cd Length: 257 Bit Score: 91.18 E-value: 1.51e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 2 NNIVIKDVNKTYdGKTYALKNINLEIKNG-MFGILGRNGSGKSTLMNMLSTILQQSSGTIEINN--ISLT---------- 68
Cdd:PRK10619 4 NKLNVIDLHKRY-GEHEVLKGVSLQANAGdVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGqtINLVrdkdgqlkva 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 69 ---QTKQIRKMIGYLPQDFDFYPNMKVKETLHYLGI-LSGIPKANLKINVAASLEKVNLVEHQNKKVKS-LSGGMKKRLG 143
Cdd:PRK10619 83 dknQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIqVLGLSKQEARERAVKYLAKVGIDERAQGKYPVhLSGGQQQRVS 162
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 488422644 144 IAQAIIHNPQVLIVDEPTAGLDPEERVRLRHLLSNLAKD-KIVIISTHIVSDIESTCENIAILDKGVIAYKG 214
Cdd:PRK10619 163 IARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEgKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEG 234
|
|
| hmuV |
PRK13548 |
hemin importer ATP-binding subunit; Provisional |
4-182 |
1.68e-21 |
|
hemin importer ATP-binding subunit; Provisional
Pssm-ID: 237422 [Multi-domain] Cd Length: 258 Bit Score: 90.99 E-value: 1.68e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 4 IVIKDVNKTYDGKTyALKNINLEIKNG-MFGILGRNGSGKSTLMNMLSTILQQSSGTIEINNISLTQTK--QIRKMIGYL 80
Cdd:PRK13548 3 LEARNLSVRLGGRT-LLDDVSLTLRPGeVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSpaELARRRAVL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 81 PQ----DFDFypnmKVKETLHyLGILS-GIPKANLKINVAASLEKVNLVEHQNKKVKSLSGGMKKRLGIAQAII------ 149
Cdd:PRK13548 82 PQhsslSFPF----TVEEVVA-MGRAPhGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAqlwepd 156
|
170 180 190
....*....|....*....|....*....|...
gi 488422644 150 HNPQVLIVDEPTAGLDPEERVRLRHLLSNLAKD 182
Cdd:PRK13548 157 GPPRWLLLDEPTSALDLAHQHHVLRLARQLAHE 189
|
|
| PhnK |
COG1101 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
4-166 |
1.79e-21 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 440718 [Multi-domain] Cd Length: 264 Bit Score: 90.92 E-value: 1.79e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 4 IVIKDVNKTYDGKT----YALKNINLEIKNGMF-GILGRNGSGKSTLMNMLSTILQQSSGTIEINNISLTQTKQIR--KM 76
Cdd:COG1101 2 LELKNLSKTFNPGTvnekRALDGLNLTIEEGDFvTVIGSNGAGKSTLLNAIAGSLPPDSGSILIDGKDVTKLPEYKraKY 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 77 IGYLPQDfdfyP------NMKVKETL-------HYLGILSGIPKANLKInVAASLEKVNL-VEHQ-NKKVKSLSGGMKKR 141
Cdd:COG1101 82 IGRVFQD----PmmgtapSMTIEENLalayrrgKRRGLRRGLTKKRREL-FRELLATLGLgLENRlDTKVGLLSGGQRQA 156
|
170 180
....*....|....*....|....*
gi 488422644 142 LGIAQAIIHNPQVLIVDEPTAGLDP 166
Cdd:COG1101 157 LSLLMATLTKPKLLLLDEHTAALDP 181
|
|
| PRK15439 |
PRK15439 |
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional |
4-239 |
2.25e-21 |
|
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Pssm-ID: 185336 [Multi-domain] Cd Length: 510 Bit Score: 93.58 E-value: 2.25e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 4 IVIKDVNKTYDGkTYALKNINLEIKNG-MFGILGRNGSGKSTLMNMLSTILQQSSGTIEINNISLTQTK--QIRKMIGYL 80
Cdd:PRK15439 12 LCARSISKQYSG-VEVLKGIDFTLHAGeVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTpaKAHQLGIYL 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 81 -PQDFDFYPNMKVKETlhylgILSGIPK-ANLKINVAASLEKVNLVEHQNKKVKSLSGGMKKRLGIAQAIIHNPQVLIVD 158
Cdd:PRK15439 91 vPQEPLLFPNLSVKEN-----ILFGLPKrQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILILD 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 159 EPTAGLDPEERVRL-RHLLSNLAKD-KIVIIStHIVSDIESTCENIAILDKGVIAYKGSIKnliELSDNKVyeIT-ISPS 235
Cdd:PRK15439 166 EPTASLTPAETERLfSRIRELLAQGvGIVFIS-HKLPEIRQLADRISVMRDGTIALSGKTA---DLSTDDI--IQaITPA 239
|
....
gi 488422644 236 KLNQ 239
Cdd:PRK15439 240 AREK 243
|
|
| ABC2_perm_RbbA |
NF033858 |
ribosome-associated ATPase/putative transporter RbbA; |
4-166 |
3.17e-21 |
|
ribosome-associated ATPase/putative transporter RbbA;
Pssm-ID: 468210 [Multi-domain] Cd Length: 907 Bit Score: 93.65 E-value: 3.17e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 4 IVIKDVNKTYdGKTYALKNINLEIKNG-MFGILGRNGSGKSTLMNMLS--TILQQssGTIEINNISLTQTKQIRKM---I 77
Cdd:NF033858 2 ARLEGVSHRY-GKTVALDDVSLDIPAGcMVGLIGPDGVGKSSLLSLIAgaRKIQQ--GRVEVLGGDMADARHRRAVcprI 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 78 GYLPQDF--DFYPNMKVKETLHYLGILSGIPKANLKINVAASLEKVNLVEHQNKKVKSLSGGMKKRLGIAQAIIHNPQVL 155
Cdd:NF033858 79 AYMPQGLgkNLYPTLSVFENLDFFGRLFGQDAAERRRRIDELLRATGLAPFADRPAGKLSGGMKQKLGLCCALIHDPDLL 158
|
170
....*....|.
gi 488422644 156 IVDEPTAGLDP 166
Cdd:NF033858 159 ILDEPTTGVDP 169
|
|
| fecE |
PRK11231 |
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE; |
15-215 |
3.26e-21 |
|
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE;
Pssm-ID: 183044 [Multi-domain] Cd Length: 255 Bit Score: 90.07 E-value: 3.26e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 15 GKTYALKNINLEIKNG-MFGILGRNGSGKSTLMNMLSTILQQSSGTIEINNISLTQ--TKQIRKMIGYLPQDFDFYPNMK 91
Cdd:PRK11231 13 GTKRILNDLSLSLPTGkITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMlsSRQLARRLALLPQHHLTPEGIT 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 92 VKETLHY--------LGILSGIPKANlkinVAASLEKVNLVEHQNKKVKSLSGGMKKRLGIAQAIIHNPQVLIVDEPTAG 163
Cdd:PRK11231 93 VRELVAYgrspwlslWGRLSAEDNAR----VNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTY 168
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 488422644 164 LDPEERVRLRHLLSNL-AKDKIVIISTHIVSDIESTCENIAILDKGVIAYKGS 215
Cdd:PRK11231 169 LDINHQVELMRLMRELnTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGT 221
|
|
| cbiO |
PRK13640 |
energy-coupling factor transporter ATPase; |
2-249 |
3.28e-21 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184200 [Multi-domain] Cd Length: 282 Bit Score: 90.63 E-value: 3.28e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 2 NNIV-IKDVNKTY-DGKTYALKNINLEIKNGMFGIL-GRNGSGKSTLMNMLSTIL---QQSSGTIEINNISLTQTK--QI 73
Cdd:PRK13640 3 DNIVeFKHVSFTYpDSKKPALNDISFSIPRGSWTALiGHNGSGKSTISKLINGLLlpdDNPNSKITVDGITLTAKTvwDI 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 74 RKMIGYLPQDFDfypNMKVKETLH---YLGILS-GIPKANLKINVAASLEKVNLVEHQNKKVKSLSGGMKKRLGIAQAII 149
Cdd:PRK13640 83 REKVGIVFQNPD---NQFVGATVGddvAFGLENrAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILA 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 150 HNPQVLIVDEPTAGLDPEERVRLRHLLSNLAKDK-IVIISthIVSDIE--STCENIAILDKGVIAYKGS---IKNLIELS 223
Cdd:PRK13640 160 VEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNnLTVIS--ITHDIDeaNMADQVLVLDDGKLLAQGSpveIFSKVEML 237
|
250 260
....*....|....*....|....*.
gi 488422644 224 DNKVYEITISPSKLNQLKKNNIFITK 249
Cdd:PRK13640 238 KEIGLDIPFVYKLKNKLKEKGISVPQ 263
|
|
| PRK10535 |
PRK10535 |
macrolide ABC transporter ATP-binding protein/permease MacB; |
6-190 |
5.62e-21 |
|
macrolide ABC transporter ATP-binding protein/permease MacB;
Pssm-ID: 182528 [Multi-domain] Cd Length: 648 Bit Score: 92.86 E-value: 5.62e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 6 IKDVNKTY---DGKTYALKNINLEIKNG-MFGILGRNGSGKSTLMNMLSTILQQSSGT--------IEINNISLTQTKqi 73
Cdd:PRK10535 7 LKDIRRSYpsgEEQVEVLKGISLDIYAGeMVAIVGASGSGKSTLMNILGCLDKPTSGTyrvagqdvATLDADALAQLR-- 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 74 RKMIGYLPQDFDFYPNMKVKETLHYLGILSGIPKANLKINVAASLEKVNLVEHQNKKVKSLSGGMKKRLGIAQAIIHNPQ 153
Cdd:PRK10535 85 REHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNGGQ 164
|
170 180 190
....*....|....*....|....*....|....*...
gi 488422644 154 VLIVDEPTAGLDPEERVRLRHLLSNL-AKDKIVIISTH 190
Cdd:PRK10535 165 VILADEPTGALDSHSGEEVMAILHQLrDRGHTVIIVTH 202
|
|
| ABCF_EF-3 |
cd03221 |
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is ... |
4-208 |
8.62e-21 |
|
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Pssm-ID: 213188 [Multi-domain] Cd Length: 144 Bit Score: 85.96 E-value: 8.62e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 4 IVIKDVNKTYDGKTyALKNINLEIKNG-MFGILGRNGSGKSTLMNMLSTILQQSSGTIEINNisltqtkqiRKMIGYLPQ 82
Cdd:cd03221 1 IELENLSKTYGGKL-LLKDISLTINPGdRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGS---------TVKIGYFEQ 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 83 dfdfypnmkvketlhylgilsgipkanlkinvaaslekvnlvehqnkkvksLSGGMKKRLGIAQAIIHNPQVLIVDEPTA 162
Cdd:cd03221 71 ---------------------------------------------------LSGGEKMRLALAKLLLENPNLLLLDEPTN 99
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 488422644 163 GLDPEERVRLRHLLSNLakDKIVIISTHIVSDIESTCENIAILDKG 208
Cdd:cd03221 100 HLDLESIEALEEALKEY--PGTVILVSHDRYFLDQVATKIIELEDG 143
|
|
| PRK09984 |
PRK09984 |
phosphonate ABC transporter ATP-binding protein; |
4-215 |
9.38e-21 |
|
phosphonate ABC transporter ATP-binding protein;
Pssm-ID: 182182 [Multi-domain] Cd Length: 262 Bit Score: 89.30 E-value: 9.38e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 4 IVIKDVNKTYDgKTYALKNINLEIKNG-MFGILGRNGSGKSTLMNMLSTIL---QQSSGTIEINNISLTQ----TKQIRK 75
Cdd:PRK09984 5 IRVEKLAKTFN-QHQALHAVDLNIHHGeMVALLGPSGSGKSTLLRHLSGLItgdKSAGSHIELLGRTVQRegrlARDIRK 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 76 ---MIGYLPQDFDFYPNMKVKETLhYLGILSGIP---------KANLKINVAASLEKVNLVEHQNKKVKSLSGGMKKRLG 143
Cdd:PRK09984 84 sraNTGYIFQQFNLVNRLSVLENV-LIGALGSTPfwrtcfswfTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQRVA 162
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 488422644 144 IAQAIIHNPQVLIVDEPTAGLDPEE-RVRLRHLLSNLAKDKI-VIISTHIVSDIESTCENIAILDKGVIAYKGS 215
Cdd:PRK09984 163 IARALMQQAKVILADEPIASLDPESaRIVMDTLRDINQNDGItVVVTLHQVDYALRYCERIVALRQGHVFYDGS 236
|
|
| PRK10070 |
PRK10070 |
proline/glycine betaine ABC transporter ATP-binding protein ProV; |
15-215 |
1.58e-20 |
|
proline/glycine betaine ABC transporter ATP-binding protein ProV;
Pssm-ID: 182221 [Multi-domain] Cd Length: 400 Bit Score: 90.48 E-value: 1.58e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 15 GKTYALKNINLEIKNG-MFGILGRNGSGKSTLMNMLSTILQQSSGTI-----EINNISLTQTKQIR-KMIGYLPQDFDFY 87
Cdd:PRK10070 39 GLSLGVKDASLAIEEGeIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVlidgvDIAKISDAELREVRrKKIAMVFQSFALM 118
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 88 PNMKVKETLHYLGILSGIPKANLKINVAASLEKVNLVEHQNKKVKSLSGGMKKRLGIAQAIIHNPQVLIVDEPTAGLDPE 167
Cdd:PRK10070 119 PHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPL 198
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 488422644 168 ERVRLRHLLSNL--AKDKIVIISTHIVSDIESTCENIAILDKGVIAYKGS 215
Cdd:PRK10070 199 IRTEMQDELVKLqaKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGT 248
|
|
| cbiO |
PRK13650 |
energy-coupling factor transporter ATPase; |
1-190 |
1.62e-20 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184209 [Multi-domain] Cd Length: 279 Bit Score: 88.64 E-value: 1.62e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 1 MNNIV-IKDVNKTYDGKT--YALKNINLEIKNG-MFGILGRNGSGKSTLMNMLSTILQQSSGTIEINNISLTQTK--QIR 74
Cdd:PRK13650 1 MSNIIeVKNLTFKYKEDQekYTLNDVSFHVKQGeWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENvwDIR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 75 KMIGYLPQDFDfypNMKVKETLH---YLGILS-GIPKANLKINVAASLEKVNLVEHQNKKVKSLSGGMKKRLGIAQAIIH 150
Cdd:PRK13650 81 HKIGMVFQNPD---NQFVGATVEddvAFGLENkGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAM 157
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 488422644 151 NPQVLIVDEPTAGLDPEERVRLRHLLSNLAKD-KIVIIS-TH 190
Cdd:PRK13650 158 RPKIIILDEATSMLDPEGRLELIKTIKGIRDDyQMTVISiTH 199
|
|
| CeuD |
COG4604 |
ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and ... |
4-232 |
1.90e-20 |
|
ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443654 [Multi-domain] Cd Length: 252 Bit Score: 87.83 E-value: 1.90e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 4 IVIKDVNKTYDGKTyALKNINLEI-KNGMFGILGRNGSGKSTLMNMLSTILQQSSGTIEINNISLTQTK--QIRKMIGYL 80
Cdd:COG4604 2 IEIKNVSKRYGGKV-VLDDVSLTIpKGGITALIGPNGAGKSTLLSMISRLLPPDSGEVLVDGLDVATTPsrELAKRLAIL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 81 PQDFDFYPNMKVKETL------HYLGILSgipKANLKInVAASLEKVNLVEHQNKKVKSLSGGMKKRLGIAQAIIHNPQV 154
Cdd:COG4604 81 RQENHINSRLTVRELVafgrfpYSKGRLT---AEDREI-IDEAIAYLDLEDLADRYLDELSGGQRQRAFIAMVLAQDTDY 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 155 LIVDEPTAGLDPEERVRLRHLLSNLAKD--KIVIISTHivsDIE---STCENIAILDKGVIAYKGSIKNLIE---LSDnk 226
Cdd:COG4604 157 VLLDEPLNNLDMKHSVQMMKLLRRLADElgKTVVIVLH---DINfasCYADHIVAMKDGRVVAQGTPEEIITpevLSD-- 231
|
....*.
gi 488422644 227 VYEITI 232
Cdd:COG4604 232 IYDTDI 237
|
|
| PRK13657 |
PRK13657 |
glucan ABC transporter ATP-binding protein/ permease; |
4-222 |
2.01e-20 |
|
glucan ABC transporter ATP-binding protein/ permease;
Pssm-ID: 184214 [Multi-domain] Cd Length: 588 Bit Score: 90.79 E-value: 2.01e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 4 IVIKDVNKTYDGKTYALKNINLEIKNG-MFGILGRNGSGKSTLMNMLSTILQQSSGTIEIN--NISLTQTKQIRKMIGYL 80
Cdd:PRK13657 335 VEFDDVSFSYDNSRQGVEDVSFEAKPGqTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDgtDIRTVTRASLRRNIAVV 414
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 81 PQDFDFYpNMKVKETlhylgILSGIPKA-NLKINVAASL-EKVNLVEHQNKKV--------KSLSGGMKKRLGIAQAIIH 150
Cdd:PRK13657 415 FQDAGLF-NRSIEDN-----IRVGRPDAtDEEMRAAAERaQAHDFIERKPDGYdtvvgergRQLSGGERQRLAIARALLK 488
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 488422644 151 NPQVLIVDEPTAGLDPEERVRLRHLLSNLAKDKIVIISTHIVSDIESTcENIAILDKGVIAYKGSIKNLIEL 222
Cdd:PRK13657 489 DPPILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRNA-DRILVFDNGRVVESGSFDELVAR 559
|
|
| ProV |
COG4175 |
ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and ... |
15-166 |
6.57e-20 |
|
ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443334 [Multi-domain] Cd Length: 389 Bit Score: 88.62 E-value: 6.57e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 15 GKTYALKNINLEIKNG-MFGILGRNGSGKSTLMNMLSTILQQSSGTIEINNISLTQ--TKQIRKM----IGYLPQDFDFY 87
Cdd:COG4175 38 GQTVGVNDASFDVEEGeIFVIMGLSGSGKSTLVRCLNRLIEPTAGEVLIDGEDITKlsKKELRELrrkkMSMVFQHFALL 117
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 88 PNMKVKETLHYlGI-LSGIPKANLKINVAASLEKVNLVEHQNKKVKSLSGGMKKRLGIAQAIIHNPQVLIVDEPTAGLDP 166
Cdd:COG4175 118 PHRTVLENVAF-GLeIQGVPKAERRERAREALELVGLAGWEDSYPDELSGGMQQRVGLARALATDPDILLMDEAFSALDP 196
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
4-222 |
7.58e-20 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 89.09 E-value: 7.58e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 4 IVIKDVNKTY----DGKTYALKNINLEIKNG-MFGILGRNGSGKSTLMNMLSTILQQSSGTIEI----NNISLTQTK--- 71
Cdd:TIGR03269 280 IKVRNVSKRYisvdRGVVKAVDNVSLEVKEGeIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVrvgdEWVDMTKPGpdg 359
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 72 --QIRKMIGYLPQDFDFYPNMKVKETLHYlGILSGIPKANLKINVAASLEKVNLVEHQ-----NKKVKSLSGGMKKRLGI 144
Cdd:TIGR03269 360 rgRAKRYIGILHQEYDLYPHRTVLDNLTE-AIGLELPDELARMKAVITLKMVGFDEEKaeeilDKYPDELSEGERHRVAL 438
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 145 AQAIIHNPQVLIVDEPTAGLDPEERVRLRHLLSNLAKD--KIVIISTHIVSDIESTCENIAILDKGVIAYKGSIKNLIEL 222
Cdd:TIGR03269 439 AQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEmeQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGDPEEIVEE 518
|
|
| cbiO |
PRK13638 |
energy-coupling factor ABC transporter ATP-binding protein; |
20-212 |
8.00e-20 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184198 [Multi-domain] Cd Length: 271 Bit Score: 86.60 E-value: 8.00e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 20 LKNINLEI-KNGMFGILGRNGSGKSTLMNMLSTILQQSSGTIEINNISLTQTKQ----IRKMIGYLPQDFD---FYPNMK 91
Cdd:PRK13638 17 LKGLNLDFsLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRgllaLRQQVATVFQDPEqqiFYTDID 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 92 --VKETLHYLGIlsgiPKANLKINVAASLEKVNLVEHQNKKVKSLSGGMKKRLGIAQAIIHNPQVLIVDEPTAGLDPEER 169
Cdd:PRK13638 97 sdIAFSLRNLGV----PEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGR 172
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 488422644 170 VRLRHLLSNL-AKDKIVIISTHIVSDIESTCENIAILDKG-VIAY 212
Cdd:PRK13638 173 TQMIAIIRRIvAQGNHVIISSHDIDLIYEISDAVYVLRQGqILTH 217
|
|
| HisP |
COG4598 |
ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]; |
4-167 |
1.03e-19 |
|
ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443652 [Multi-domain] Cd Length: 259 Bit Score: 86.01 E-value: 1.03e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 4 IVIKDVNKTYdGKTYALKNINLEIKNG-MFGILGRNGSGKSTL---MNMLSTilqQSSGTIEINN--ISLTQTK------ 71
Cdd:COG4598 9 LEVRDLHKSF-GDLEVLKGVSLTARKGdVISIIGSSGSGKSTFlrcINLLET---PDSGEIRVGGeeIRLKPDRdgelvp 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 72 -------QIRKMIGYLPQDFDFYPNMKVKET-----LHYLGIlsgiPKANLKINVAASLEKVNLVEHQNKKVKSLSGGMK 139
Cdd:COG4598 85 adrrqlqRIRTRLGMVFQSFNLWSHMTVLENvieapVHVLGR----PKAEAIERAEALLAKVGLADKRDAYPAHLSGGQQ 160
|
170 180
....*....|....*....|....*...
gi 488422644 140 KRLGIAQAIIHNPQVLIVDEPTAGLDPE 167
Cdd:COG4598 161 QRAAIARALAMEPEVMLFDEPTSALDPE 188
|
|
| PRK14267 |
PRK14267 |
phosphate ABC transporter ATP-binding protein; Provisional |
3-229 |
1.73e-19 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184596 [Multi-domain] Cd Length: 253 Bit Score: 85.28 E-value: 1.73e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 3 NIVIKDVN-KTYDGKTYALKNINLEI-KNGMFGILGRNGSGKSTLMNMLSTILQ-----QSSGTIEINNISLTQTK---- 71
Cdd:PRK14267 2 KFAIETVNlRVYYGSNHVIKGVDLKIpQNGVFALMGPSGCGKSTLLRTFNRLLElneeaRVEGEVRLFGRNIYSPDvdpi 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 72 QIRKMIGYLPQDFDFYPNMKVKETLHYLGILSGI--PKANLKINVAASLEKVNLVEHQNKKVK----SLSGGMKKRLGIA 145
Cdd:PRK14267 82 EVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLvkSKKELDERVEWALKKAALWDEVKDRLNdypsNLSGGQRQRLVIA 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 146 QAIIHNPQVLIVDEPTAGLDPEERVRLRHLLSNLAKDKIVIISTHIVSDIESTCENIAILDKGVIAYKGSIKNLIELSDN 225
Cdd:PRK14267 162 RALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTRKVFENPEH 241
|
....
gi 488422644 226 KVYE 229
Cdd:PRK14267 242 ELTE 245
|
|
| livG |
PRK11300 |
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional |
19-192 |
2.45e-19 |
|
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Pssm-ID: 183080 [Multi-domain] Cd Length: 255 Bit Score: 85.04 E-value: 2.45e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 19 ALKNINLEIKNG-MFGILGRNGSGKSTLMNMLSTILQQSSGTIEINNIS---LTQTKQIRKMIGYLPQDFDFYPNMKVKE 94
Cdd:PRK11300 20 AVNNVNLEVREQeIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHiegLPGHQIARMGVVRTFQHVRLFREMTVIE 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 95 TL-----HYL--GILSGIPKA-------NLKINVAAS-LEKVNLVEHQNKKVKSLSGGMKKRLGIAQAIIHNPQVLIVDE 159
Cdd:PRK11300 100 NLlvaqhQQLktGLFSGLLKTpafrraeSEALDRAATwLERVGLLEHANRQAGNLAYGQQRRLEIARCMVTQPEILMLDE 179
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 488422644 160 PTAGLDPEERVRLRHLLSNLAKD------------KIVI-ISTHIV 192
Cdd:PRK11300 180 PAAGLNPKETKELDELIAELRNEhnvtvlliehdmKLVMgISDRIY 225
|
|
| ArpD |
COG4618 |
ABC-type protease/lipase transport system, ATPase and permease components [Intracellular ... |
15-214 |
4.13e-19 |
|
ABC-type protease/lipase transport system, ATPase and permease components [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 443660 [Multi-domain] Cd Length: 563 Bit Score: 87.11 E-value: 4.13e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 15 GKTYALKNINLEIKNG-MFGILGRNGSGKSTLMNMLSTILQQSSGTIEINNISLTQ--TKQIRKMIGYLPQDFDFYPNmK 91
Cdd:COG4618 343 SKRPILRGVSFSLEPGeVLGVIGPSGSGKSTLARLLVGVWPPTAGSVRLDGADLSQwdREELGRHIGYLPQDVELFDG-T 421
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 92 VKEtlhylgilsgipkanlkiNVA----ASLEKVnlVE-------HQ---------NKKV----KSLSGGMKKRLGIAQA 147
Cdd:COG4618 422 IAE------------------NIArfgdADPEKV--VAaaklagvHEmilrlpdgyDTRIgeggARLSGGQRQRIGLARA 481
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 488422644 148 IIHNPQVLIVDEPTAGLDPEERVRLRHLLSNLAKDK-IVIISTHIVSdIESTCENIAILDKGVIAYKG 214
Cdd:COG4618 482 LYGDPRLVVLDEPNSNLDDEGEAALAAAIRALKARGaTVVVITHRPS-LLAAVDKLLVLRDGRVQAFG 548
|
|
| nickel_nikD |
TIGR02770 |
nickel import ATP-binding protein NikD; This family represents the NikD subunit of a ... |
22-220 |
4.85e-19 |
|
nickel import ATP-binding protein NikD; This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 131817 [Multi-domain] Cd Length: 230 Bit Score: 83.57 E-value: 4.85e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 22 NINLEIKNG-MFGILGRNGSGKST----LMNMLSTILQQSSGTIEINNISLTQTKQIRKMIGYLPQD----FDFYPNMK- 91
Cdd:TIGR02770 4 DLNLSLKRGeVLALVGESGSGKSLtclaILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNprtaFNPLFTMGn 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 92 -VKETLHYLGILSGIPKANLkinvAASLEKVNLvEHQNKKVKS----LSGGMKKRLGIAQAIIHNPQVLIVDEPTAGLDP 166
Cdd:TIGR02770 84 hAIETLRSLGKLSKQARALI----LEALEAVGL-PDPEEVLKKypfqLSGGMLQRVMIALALLLEPPFLIADEPTTDLDV 158
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 488422644 167 EERVRLRHLLSNLAKDK--IVIISTHIVSDIESTCENIAILDKGVIAYKGSIKNLI 220
Cdd:TIGR02770 159 VNQARVLKLLRELRQLFgtGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIF 214
|
|
| YbbA |
COG4181 |
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase ... |
4-165 |
6.94e-19 |
|
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443338 [Multi-domain] Cd Length: 233 Bit Score: 83.25 E-value: 6.94e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 4 IVIKDVNKTY---DGKTYALKNINLEIKNGMF-GILGRNGSGKSTLMNMLSTILQQSSGTIEINNISLT-----QTKQIR 74
Cdd:COG4181 9 IELRGLTKTVgtgAGELTILKGISLEVEAGESvAIVGASGSGKSTLLGLLAGLDRPTSGTVRLAGQDLFaldedARARLR 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 75 -KMIGYLPQDFDFYPNMKVketLHYLGI---LSGIPKAnlKINVAASLEKVNLVEHQNKKVKSLSGGMKKRLGIAQAIIH 150
Cdd:COG4181 89 aRHVGFVFQSFQLLPTLTA---LENVMLpleLAGRRDA--RARARALLERVGLGHRLDHYPAQLSGGEQQRVALARAFAT 163
|
170
....*....|....*
gi 488422644 151 NPQVLIVDEPTAGLD 165
Cdd:COG4181 164 EPAILFADEPTGNLD 178
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
4-215 |
1.08e-18 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 85.62 E-value: 1.08e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 4 IVIKDVNKTYDGKTyALKNINLEIKNG-MFGILGRNGSGKSTLMNMLSTILQ---------------QSSGTIEIN---- 63
Cdd:TIGR03269 1 IEVKNLTKKFDGKE-VLKNISFTIEEGeVLGILGRSGAGKSVLMHVLRGMDQyeptsgriiyhvalcEKCGYVERPskvg 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 64 ------------------NISLTQTKQIRKMIGYLPQ-DFDFYPNMKV----KETLHYLGIlsgipKANLKINVAASL-E 119
Cdd:TIGR03269 80 epcpvcggtlepeevdfwNLSDKLRRRIRKRIAIMLQrTFALYGDDTVldnvLEALEEIGY-----EGKEAVGRAVDLiE 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 120 KVNLVEHQNKKVKSLSGGMKKRLGIAQAIIHNPQVLIVDEPTAGLDPEERVRLRHLLSNLAKDK--IVIISTHIVSDIES 197
Cdd:TIGR03269 155 MVQLSHRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASgiSMVLTSHWPEVIED 234
|
250
....*....|....*...
gi 488422644 198 TCENIAILDKGVIAYKGS 215
Cdd:TIGR03269 235 LSDKAIWLENGEIKEEGT 252
|
|
| cbiO |
PRK13631 |
cobalt transporter ATP-binding subunit; Provisional |
13-215 |
1.08e-18 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237451 [Multi-domain] Cd Length: 320 Bit Score: 84.52 E-value: 1.08e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 13 YDGKT----YALKNINLEI-KNGMFGILGRNGSGKSTLMNMLSTILQQSSGTIEINNISLTQT----------------- 70
Cdd:PRK13631 31 FDEKQenelVALNNISYTFeKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKknnhelitnpyskkikn 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 71 -KQIRKMIGYLPQdFDFYPNMK--VKETLHYLGILSGIPKANLKINVAASLEKVNLVE-HQNKKVKSLSGGMKKRLGIAQ 146
Cdd:PRK13631 111 fKELRRRVSMVFQ-FPEYQLFKdtIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDsYLERSPFGLSGGQKRRVAIAG 189
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 147 AIIHNPQVLIVDEPTAGLDPE-ERVRLRHLLSNLAKDKIVIISTHIVSDIESTCENIAILDKGVIAYKGS 215
Cdd:PRK13631 190 ILAIQPEILIFDEPTAGLDPKgEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKILKTGT 259
|
|
| PRK14246 |
PRK14246 |
phosphate ABC transporter ATP-binding protein; Provisional |
20-229 |
1.33e-18 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172734 [Multi-domain] Cd Length: 257 Bit Score: 83.17 E-value: 1.33e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 20 LKNINLEI-KNGMFGILGRNGSGKSTLMNMLSTILQQSSGTIEINNISLTQTKQI--------RKMIGYLPQDFDFYPNM 90
Cdd:PRK14246 26 LKDITIKIpNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIfqidaiklRKEVGMVFQQPNPFPHL 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 91 KVKETLHYLGILSGIP-KANLKINVAASLEKVNLVEHQNKKVKS----LSGGMKKRLGIAQAIIHNPQVLIVDEPTAGLD 165
Cdd:PRK14246 106 SIYDNIAYPLKSHGIKeKREIKKIVEECLRKVGLWKEVYDRLNSpasqLSGGQQQRLTIARALALKPKVLLMDEPTSMID 185
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 488422644 166 PEERVRLRHLLSNLAKDKIVIISTHIVSDIESTCENIAILDKGVIAYKGSIKNLIELSDNKVYE 229
Cdd:PRK14246 186 IVNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIFTSPKNELTE 249
|
|
| ABCC_MRP_domain1 |
cd03250 |
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This ... |
4-208 |
2.93e-18 |
|
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213217 [Multi-domain] Cd Length: 204 Bit Score: 80.98 E-value: 2.93e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 4 IVIKDVNKTYDGK----TYALKNINLEIKNGMF-GILGRNGSGKSTLmnmLSTIL---QQSSGTIEINnisltqtkqirK 75
Cdd:cd03250 1 ISVEDASFTWDSGeqetSFTLKDINLEVPKGELvAIVGPVGSGKSSL---LSALLgelEKLSGSVSVP-----------G 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 76 MIGYLPQdFDFYPNMKVKETlhylgILSGIP------KANLKinvAASLEK--VNLVEHQNKKVK----SLSGGMKKRLG 143
Cdd:cd03250 67 SIAYVSQ-EPWIQNGTIREN-----ILFGKPfdeeryEKVIK---ACALEPdlEILPDGDLTEIGekgiNLSGGQKQRIS 137
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 488422644 144 IAQAIIHNPQVLIVDEPTAGLDPEERVRLRH--LLSNLAKDKIVIISTHIVSDIEStCENIAILDKG 208
Cdd:cd03250 138 LARAVYSDADIYLLDDPLSAVDAHVGRHIFEncILGLLLNNKTRILVTHQLQLLPH-ADQIVVLDNG 203
|
|
| PRK11174 |
PRK11174 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
2-215 |
4.91e-18 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236870 [Multi-domain] Cd Length: 588 Bit Score: 83.74 E-value: 4.91e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 2 NNIVIKD-VNKTYDGKTyALKNINLEIKNGMF-GILGRNGSGKSTLMNMLSTIL--QqssGTIEINNISLTQ--TKQIRK 75
Cdd:PRK11174 348 VTIEAEDlEILSPDGKT-LAGPLNFTLPAGQRiALVGPSGAGKTSLLNALLGFLpyQ---GSLKINGIELREldPESWRK 423
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 76 MIGYLPQDfdfyPNMkVKETLHYlGILSGIPKAN-LKINVAASLEKVN-LVEHQNKKVKS--------LSGGMKKRLGIA 145
Cdd:PRK11174 424 HLSWVGQN----PQL-PHGTLRD-NVLLGNPDASdEQLQQALENAWVSeFLPLLPQGLDTpigdqaagLSVGQAQRLALA 497
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 488422644 146 QAIIHNPQVLIVDEPTAGLD--PEERVrLRHLLSNlAKDKIVIISTHIVSDIEStCENIAILDKGVIAYKGS 215
Cdd:PRK11174 498 RALLQPCQLLLLDEPTASLDahSEQLV-MQALNAA-SRRQTTLMVTHQLEDLAQ-WDQIWVMQDGQIVQQGD 566
|
|
| btuD |
PRK09536 |
corrinoid ABC transporter ATPase; Reviewed |
4-210 |
5.21e-18 |
|
corrinoid ABC transporter ATPase; Reviewed
Pssm-ID: 236554 [Multi-domain] Cd Length: 402 Bit Score: 83.35 E-value: 5.21e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 4 IVIKDVNKTYdGKTYALKNINLEIKNGMF-GILGRNGSGKSTLMNMLSTILQQSSGTIEINN--ISLTQTKQIRKMIGYL 80
Cdd:PRK09536 4 IDVSDLSVEF-GDTTVLDGVDLSVREGSLvGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGddVEALSARAASRRVASV 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 81 PQD----FDFYPNMKVK--ETLHyLGILSGIPKANLKInVAASLEKVNLVEHQNKKVKSLSGGMKKRLGIAQAIIHNPQV 154
Cdd:PRK09536 83 PQDtslsFEFDVRQVVEmgRTPH-RSRFDTWTETDRAA-VERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPV 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 488422644 155 LIVDEPTAGLDPEERVRLRHLLSNLAKD-KIVIISTHIVSDIESTCENIAILDKGVI 210
Cdd:PRK09536 161 LLLDEPTASLDINHQVRTLELVRRLVDDgKTAVAAIHDLDLAARYCDELVLLADGRV 217
|
|
| ABCC_TAP |
cd03248 |
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; ... |
7-210 |
7.00e-18 |
|
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Pssm-ID: 213215 [Multi-domain] Cd Length: 226 Bit Score: 80.59 E-value: 7.00e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 7 KDVNKTYDGK--TYALKNINLEIKNG-MFGILGRNGSGKSTLMNMLSTILQQSSGTIEINN--ISLTQTKQIRKMIGYLP 81
Cdd:cd03248 15 QNVTFAYPTRpdTLVLQDVSFTLHPGeVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGkpISQYEHKYLHSKVSLVG 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 82 QDFDFY---------------PNMKVKETLHYLGILSGIPKANLKINVAASlEKVNLvehqnkkvksLSGGMKKRLGIAQ 146
Cdd:cd03248 95 QEPVLFarslqdniayglqscSFECVKEAAQKAHAHSFISELASGYDTEVG-EKGSQ----------LSGGQKQRVAIAR 163
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 488422644 147 AIIHNPQVLIVDEPTAGLDPEERVRLRHLLSNLAKDKIVIISTHIVSDIESTcENIAILDKGVI 210
Cdd:cd03248 164 ALIRNPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVERA-DQILVLDGGRI 226
|
|
| modC |
PRK11144 |
molybdenum ABC transporter ATP-binding protein ModC; |
22-212 |
9.89e-18 |
|
molybdenum ABC transporter ATP-binding protein ModC;
Pssm-ID: 182993 [Multi-domain] Cd Length: 352 Bit Score: 81.84 E-value: 9.89e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 22 NINLEI-KNGMFGILGRNGSGKSTLMNMLSTILQQSSGTIEINN---------ISLTQTKqiRKmIGYLPQDFDFYPNMK 91
Cdd:PRK11144 16 TVNLTLpAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGrvlfdaekgICLPPEK--RR-IGYVFQDARLFPHYK 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 92 VKETLHYlgilsGIPKANlkinvAASLEK-VNL--VEHQNKKV-KSLSGGMKKRLGIAQAIIHNPQVLIVDEPTAGLD-P 166
Cdd:PRK11144 93 VRGNLRY-----GMAKSM-----VAQFDKiVALlgIEPLLDRYpGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDlP 162
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 488422644 167 EERvRLRHLLSNLAKD-KIVII-STHIVSDIESTCENIAILDKG-VIAY 212
Cdd:PRK11144 163 RKR-ELLPYLERLAREiNIPILyVSHSLDEILRLADRVVVLEQGkVKAF 210
|
|
| cbiO |
PRK13645 |
energy-coupling factor transporter ATPase; |
3-240 |
1.04e-17 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184204 [Multi-domain] Cd Length: 289 Bit Score: 81.21 E-value: 1.04e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 3 NIVIKDVNKTYDGKT----YALKNINLEIK-NGMFGILGRNGSGKSTLMNMLSTILQQSSG-------TIEINNISLTQT 70
Cdd:PRK13645 6 DIILDNVSYTYAKKTpfefKALNNTSLTFKkNKVTCVIGTTGSGKSTMIQLTNGLIISETGqtivgdyAIPANLKKIKEV 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 71 KQIRKMIGYLPQ--DFDFYPNMkVKETLHYLGILSGIPKANLKINVAASLEKVNLVEHQNKKVK-SLSGGMKKRLGIAQA 147
Cdd:PRK13645 86 KRLRKEIGLVFQfpEYQLFQET-IEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPfELSGGQKRRVALAGI 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 148 IIHNPQVLIVDEPTAGLDPEERVRLRHLLSNLAKD--KIVIISTHIVSDIESTCENIAILDKGVIAYKGS---IKNLIEL 222
Cdd:PRK13645 165 IAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEykKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSpfeIFSNQEL 244
|
250
....*....|....*...
gi 488422644 223 sdnkVYEITISPSKLNQL 240
Cdd:PRK13645 245 ----LTKIEIDPPKLYQL 258
|
|
| PRK10253 |
PRK10253 |
iron-enterobactin ABC transporter ATP-binding protein; |
15-220 |
1.33e-17 |
|
iron-enterobactin ABC transporter ATP-binding protein;
Pssm-ID: 182336 [Multi-domain] Cd Length: 265 Bit Score: 80.42 E-value: 1.33e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 15 GKTYALKNINLEIKNGMF-GILGRNGSGKSTLMNMLSTILQQSSGTIEINNISLTQ--TKQIRKMIGYLPQDFDFYPNMK 91
Cdd:PRK10253 18 GKYTVAENLTVEIPDGHFtAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHyaSKEVARRIGLLAQNATTPGDIT 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 92 VKEtLHYLGILSGIP-----KANLKINVAASLEKVNLVEHQNKKVKSLSGGMKKRLGIAQAIIHNPQVLIVDEPTAGLDP 166
Cdd:PRK10253 98 VQE-LVARGRYPHQPlftrwRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDI 176
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 488422644 167 EERVRLRHLLSNLAKDKIVIISThIVSDIESTCE---NIAILDKGVIAYKGSIKNLI 220
Cdd:PRK10253 177 SHQIDLLELLSELNREKGYTLAA-VLHDLNQACRyasHLIALREGKIVAQGAPKEIV 232
|
|
| PRK13539 |
PRK13539 |
cytochrome c biogenesis protein CcmA; Provisional |
34-191 |
1.77e-17 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 237421 [Multi-domain] Cd Length: 207 Bit Score: 78.76 E-value: 1.77e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 34 ILGRNGSGKSTLMNMLSTILQQSSGTIEINnisltqtkqirkmigylPQDFDFypnMKVKETLHYLGILSGIpKANLKI- 112
Cdd:PRK13539 33 LTGPNGSGKTTLLRLIAGLLPPAAGTIKLD-----------------GGDIDD---PDVAEACHYLGHRNAM-KPALTVa 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 113 ---------------NVAASLEKVNLVEHQNKKVKSLSGGMKKRLGIAQAIIHNPQVLIVDEPTAGLDPE-ERVRLRHLL 176
Cdd:PRK13539 92 enlefwaaflggeelDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAaVALFAELIR 171
|
170
....*....|....*
gi 488422644 177 SNLAKDKIVIISTHI 191
Cdd:PRK13539 172 AHLAQGGIVIAATHI 186
|
|
| cbiO |
PRK13642 |
energy-coupling factor transporter ATPase; |
20-243 |
3.84e-17 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184202 [Multi-domain] Cd Length: 277 Bit Score: 79.37 E-value: 3.84e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 20 LKNINLEIKNGMF-GILGRNGSGKSTLMNMLSTILQQSSGTIEINNISLTQTK--QIRKMIGYLPQDFDF-YPNMKVKET 95
Cdd:PRK13642 23 LNGVSFSITKGEWvSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENvwNLRRKIGMVFQNPDNqFVGATVEDD 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 96 LHYLGILSGIPKANLKINVAASLEKVNLVEHQNKKVKSLSGGMKKRLGIAQAIIHNPQVLIVDEPTAGLDPEERVRLRHL 175
Cdd:PRK13642 103 VAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRV 182
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 488422644 176 LSNLaKDKIVIISTHIVSDIE--STCENIAILDKGVIAYKGSIKNLIELSDNKV---YEITISPSKLNQLKKN 243
Cdd:PRK13642 183 IHEI-KEKYQLTVLSITHDLDeaASSDRILVMKAGEIIKEAAPSELFATSEDMVeigLDVPFSSNLMKDLRKN 254
|
|
| ATM1 |
COG5265 |
ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components ... |
4-215 |
6.74e-17 |
|
ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444078 [Multi-domain] Cd Length: 605 Bit Score: 80.63 E-value: 6.74e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 4 IVIKDVNKTYDGKTYALKNINLEIKNG-MFGILGRNGSGKSTLMNMLSTILQQSSGTIEINNISLTQTKQ--IRKMIGYL 80
Cdd:COG5265 358 VRFENVSFGYDPERPILKGVSFEVPAGkTVAIVGPSGAGKSTLARLLFRFYDVTSGRILIDGQDIRDVTQasLRAAIGIV 437
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 81 PQD---FDfypnmkvkETLHYlGILSGIPKANL-KINVAASLEKV-NLVEHQNKKVKS--------LSGGMKKRLGIAQA 147
Cdd:COG5265 438 PQDtvlFN--------DTIAY-NIAYGRPDASEeEVEAAARAAQIhDFIESLPDGYDTrvgerglkLSGGEKQRVAIART 508
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 488422644 148 IIHNPQVLIVDEPTAGLDPEERVRLRHLLSNLAKDKIVIISTHIVSDIEStCENIAILDKGVIAYKGS 215
Cdd:COG5265 509 LLKNPPILIFDEATSALDSRTERAIQAALREVARGRTTLVIAHRLSTIVD-ADEILVLEAGRIVERGT 575
|
|
| PRK13543 |
PRK13543 |
heme ABC exporter ATP-binding protein CcmA; |
36-190 |
8.41e-17 |
|
heme ABC exporter ATP-binding protein CcmA;
Pssm-ID: 184129 [Multi-domain] Cd Length: 214 Bit Score: 77.20 E-value: 8.41e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 36 GRNGSGKSTLMNMLSTILQQSSGTIEINNISLTQTKQIRKM--IGYLPQdfdFYPNMKVKETLHYLGILSGIPKANLKIN 113
Cdd:PRK13543 44 GDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMayLGHLPG---LKADLSTLENLHFLCGLHGRRAKQMPGS 120
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 488422644 114 vaaSLEKVNLVEHQNKKVKSLSGGMKKRLGIAQAIIHNPQVLIVDEPTAGLDPEERVRLRHLLS-NLAKDKIVIISTH 190
Cdd:PRK13543 121 ---ALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISaHLRGGGAALVTTH 195
|
|
| lolD |
PRK11629 |
lipoprotein-releasing ABC transporter ATP-binding protein LolD; |
11-165 |
8.44e-17 |
|
lipoprotein-releasing ABC transporter ATP-binding protein LolD;
Pssm-ID: 183244 [Multi-domain] Cd Length: 233 Bit Score: 77.55 E-value: 8.44e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 11 KTY-DGK--TYALKNINLEIKNG-MFGILGRNGSGKSTLMNMLSTILQQSSGTI-----EINNISLTQTKQIR-KMIGYL 80
Cdd:PRK11629 13 KRYqEGSvqTDVLHNVSFSIGEGeMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVifngqPMSKLSSAAKAELRnQKLGFI 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 81 PQDFDFYPNMKVKETLHYLGILSGIPKANLKINVAASLEKVNLVEHQNKKVKSLSGGMKKRLGIAQAIIHNPQVLIVDEP 160
Cdd:PRK11629 93 YQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEP 172
|
....*
gi 488422644 161 TAGLD 165
Cdd:PRK11629 173 TGNLD 177
|
|
| znuC |
PRK09544 |
high-affinity zinc transporter ATPase; Reviewed |
1-179 |
1.61e-16 |
|
high-affinity zinc transporter ATPase; Reviewed
Pssm-ID: 181939 [Multi-domain] Cd Length: 251 Bit Score: 77.08 E-value: 1.61e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 1 MNNIV-IKDVNKTYdGKTYALKNINLEIKNG-MFGILGRNGSGKSTLMNMLSTILQQSSGTIEinnisltQTKQIRkmIG 78
Cdd:PRK09544 1 MTSLVsLENVSVSF-GQRRVLSDVSLELKPGkILTLLGPNGAGKSTLVRVVLGLVAPDEGVIK-------RNGKLR--IG 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 79 YLPQDFDFYPNMKVKETlHYLGILSGIPKANlkinVAASLEKVNLVEHQNKKVKSLSGGMKKRLGIAQAIIHNPQVLIVD 158
Cdd:PRK09544 71 YVPQKLYLDTTLPLTVN-RFLRLRPGTKKED----ILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLD 145
|
170 180
....*....|....*....|.
gi 488422644 159 EPTAGLDPEERVRLRHLLSNL 179
Cdd:PRK09544 146 EPTQGVDVNGQVALYDLIDQL 166
|
|
| PRK14243 |
PRK14243 |
phosphate transporter ATP-binding protein; Provisional |
3-190 |
1.71e-16 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184588 [Multi-domain] Cd Length: 264 Bit Score: 77.51 E-value: 1.71e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 3 NIVIKDVN-KTYDGKTYALKNINLEI-KNGMFGILGRNGSGKSTLM---NMLSTILQ--QSSGTIEINNISLTQTK---- 71
Cdd:PRK14243 8 ETVLRTENlNVYYGSFLAVKNVWLDIpKNQITAFIGPSGCGKSTILrcfNRLNDLIPgfRVEGKVTFHGKNLYAPDvdpv 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 72 QIRKMIGYLPQDFDFYPNmKVKETLHYLGILSGIpKANLKINVAASLEKVNLVEHQNKKVK----SLSGGMKKRLGIAQA 147
Cdd:PRK14243 88 EVRRRIGMVFQKPNPFPK-SIYDNIAYGARINGY-KGDMDELVERSLRQAALWDEVKDKLKqsglSLSGGQQQRLCIARA 165
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 488422644 148 IIHNPQVLIVDEPTAGLDPEERVRLRHLLSNLAKDKIVIISTH 190
Cdd:PRK14243 166 IAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTH 208
|
|
| PRK14239 |
PRK14239 |
phosphate transporter ATP-binding protein; Provisional |
6-248 |
2.35e-16 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184585 [Multi-domain] Cd Length: 252 Bit Score: 76.74 E-value: 2.35e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 6 IKDVNkTYDGKTYALKNINLEI-KNGMFGILGRNGSGKSTL------MNMLS---TIlqqsSGTIEINNISL----TQTK 71
Cdd:PRK14239 8 VSDLS-VYYNKKKALNSVSLDFyPNEITALIGPSGSGKSTLlrsinrMNDLNpevTI----TGSIVYNGHNIysprTDTV 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 72 QIRKMIGYLPQDFDFYPnMKVKETLHYLGILSGIP-KANLKINVAASLEKVNLVE----HQNKKVKSLSGGMKKRLGIAQ 146
Cdd:PRK14239 83 DLRKEIGMVFQQPNPFP-MSIYENVVYGLRLKGIKdKQVLDEAVEKSLKGASIWDevkdRLHDSALGLSGGQQQRVCIAR 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 147 AIIHNPQVLIVDEPTAGLDPEERVRLRHLLSNLAKDKIVIISTHIVSDIESTCENIAILDKGviaykgsikNLIELSDNK 226
Cdd:PRK14239 162 VLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDG---------DLIEYNDTK 232
|
250 260
....*....|....*....|..
gi 488422644 227 vyEITISPSKlnqlKKNNIFIT 248
Cdd:PRK14239 233 --QMFMNPKH----KETEDYIS 248
|
|
| PRK10575 |
PRK10575 |
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC; |
33-221 |
2.52e-16 |
|
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC;
Pssm-ID: 182561 [Multi-domain] Cd Length: 265 Bit Score: 76.75 E-value: 2.52e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 33 GILGRNGSGKSTLMNMLSTILQQSSGTIEINNISLTQ--TKQIRKMIGYLPQDFDFYPNMKVKETLH-----YLGILSGI 105
Cdd:PRK10575 41 GLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESwsSKAFARKVAYLPQQLPAAEGMTVRELVAigrypWHGALGRF 120
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 106 PKANL-KINVAASLekVNLVEHQNKKVKSLSGGMKKRLGIAQAIIHNPQVLIVDEPTAGLDPEERVRLRHLLSNLAKDK- 183
Cdd:PRK10575 121 GAADReKVEEAISL--VGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERg 198
|
170 180 190
....*....|....*....|....*....|....*....
gi 488422644 184 -IVIISTHIVSDIESTCENIAILDKGVIAYKGSIKNLIE 221
Cdd:PRK10575 199 lTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELMR 237
|
|
| ABC_Carb_Monos_II |
cd03215 |
Second domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
19-208 |
3.07e-16 |
|
Second domain of the ATP-binding cassette component of monosaccharide transport system; This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213182 [Multi-domain] Cd Length: 182 Bit Score: 74.78 E-value: 3.07e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 19 ALKNINLEIKNG-MFGILGRNGSGKSTLMNMLSTILQQSSGTIEINNISLT---QTKQIRKMIGYLPQDfdfypnmKVKE 94
Cdd:cd03215 15 AVRDVSFEVRAGeIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTrrsPRDAIRAGIAYVPED-------RKRE 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 95 tlhylGIlsgIPKANLKINVAASLekvnlvehqnkkvkSLSGGMKKRLGIAQAIIHNPQVLIVDEPTAGLDPEERVRLRH 174
Cdd:cd03215 88 -----GL---VLDLSVAENIALSS--------------LLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYR 145
|
170 180 190
....*....|....*....|....*....|....*.
gi 488422644 175 LLSNLAKDK--IVIISTHIvSDIESTCENIAILDKG 208
Cdd:cd03215 146 LIRELADAGkaVLLISSEL-DELLGLCDRILVMYEG 180
|
|
| ABCC_NFT1 |
cd03369 |
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type ... |
19-211 |
3.73e-16 |
|
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213269 [Multi-domain] Cd Length: 207 Bit Score: 75.14 E-value: 3.73e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 19 ALKNINLEIKNG-MFGILGRNGSGKSTLMNMLSTILQQSSGTIEINN--ISLTQTKQIRKMIGYLPQDfdfyPNmkvket 95
Cdd:cd03369 23 VLKNVSFKVKAGeKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGidISTIPLEDLRSSLTIIPQD----PT------ 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 96 lhylgILSGIPKANLKINVAASLEKVNLVEHQNKKVKSLSGGMKKRLGIAQAIIHNPQVLIVDEPTAGLDPEERVRLRHL 175
Cdd:cd03369 93 -----LFSGTIRSNLDPFDEYSDEEIYGALRVSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKT 167
|
170 180 190
....*....|....*....|....*....|....*.
gi 488422644 176 LSNLAKDKIVIISTHIVSDIeSTCENIAILDKGVIA 211
Cdd:cd03369 168 IREEFTNSTILTIAHRLRTI-IDYDKILVMDAGEVK 202
|
|
| 3a01208 |
TIGR00958 |
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other] |
20-224 |
3.86e-16 |
|
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273363 [Multi-domain] Cd Length: 711 Bit Score: 78.61 E-value: 3.86e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 20 LKNINLEIKNG-MFGILGRNGSGKSTLMNMLSTILQQSSGTIEINNISLTQT--KQIRKMIGYLPQDFDFYpNMKVKETL 96
Cdd:TIGR00958 497 LKGLTFTLHPGeVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYdhHYLHRQVALVGQEPVLF-SGSVRENI 575
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 97 HYLgiLSGIPKANLKINVAASLEKVNLVEHQN-------KKVKSLSGGMKKRLGIAQAIIHNPQVLIVDEPTAGLDpeer 169
Cdd:TIGR00958 576 AYG--LTDTPDEEIMAAAKAANAHDFIMEFPNgydtevgEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALD---- 649
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 488422644 170 VRLRHLL--SNLAKDKIVIISTHIVSDIEStCENIAILDKGVIAYKGSIKNLIELSD 224
Cdd:TIGR00958 650 AECEQLLqeSRSRASRTVLLIAHRLSTVER-ADQILVLKKGSVVEMGTHKQLMEDQG 705
|
|
| PRK14258 |
PRK14258 |
phosphate ABC transporter ATP-binding protein; Provisional |
4-190 |
4.01e-16 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184593 [Multi-domain] Cd Length: 261 Bit Score: 76.23 E-value: 4.01e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 4 IVIKDVNKTYDGKTYaLKNINLEI-KNGMFGILGRNGSGKSTLMNMLSTILQQSS-----GTIEINNISLTQTK----QI 73
Cdd:PRK14258 8 IKVNNLSFYYDTQKI-LEGVSMEIyQSKVTAIIGPSGCGKSTFLKCLNRMNELESevrveGRVEFFNQNIYERRvnlnRL 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 74 RKMIGYLPQDFDFYPnMKVKETLHY-LGILSGIPKANLKINVAASLEKVNL---VEHQ-NKKVKSLSGGMKKRLGIAQAI 148
Cdd:PRK14258 87 RRQVSMVHPKPNLFP-MSVYDNVAYgVKIVGWRPKLEIDDIVESALKDADLwdeIKHKiHKSALDLSGGQQQRLCIARAL 165
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 488422644 149 IHNPQVLIVDEPTAGLDPEERVRLRHLLSN--LAKDKIVIISTH 190
Cdd:PRK14258 166 AVKPKVLLMDEPCFGLDPIASMKVESLIQSlrLRSELTMVIVSH 209
|
|
| ABCC_CFTR2 |
cd03289 |
ATP-binding cassette domain 2 of CFTR,subfamily C; The cystic fibrosis transmembrane regulator ... |
4-271 |
4.62e-16 |
|
ATP-binding cassette domain 2 of CFTR,subfamily C; The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Pssm-ID: 213256 [Multi-domain] Cd Length: 275 Bit Score: 76.43 E-value: 4.62e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 4 IVIKDVNKTY-DGKTYALKNINLEIKNGM-FGILGRNGSGKSTLMNMLSTILqQSSGTIEINNISLTQT--KQIRKMIGY 79
Cdd:cd03289 3 MTVKDLTAKYtEGGNAVLENISFSISPGQrVGLLGRTGSGKSTLLSAFLRLL-NTEGDIQIDGVSWNSVplQKWRKAFGV 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 80 LPQDF-----DFYPNMKVKETLHYLGILSGIPKANLKINVAASLEKVNLVEHQNKKVksLSGGMKKRLGIAQAIIHNPQV 154
Cdd:cd03289 82 IPQKVfifsgTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCV--LSHGHKQLMCLARSVLSKAKI 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 155 LIVDEPTAGLDPEERVRLRHLLSNLAKDKIVIISTHIVSDIEStCENIAILDKGVIAYKGSIKNLieLSDNKVYEITISP 234
Cdd:cd03289 160 LLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAMLE-CQRFLVIEENKVRQYDSIQKL--LNEKSHFKQAISP 236
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 488422644 235 S---KLNQLKKNNIFITKIQEYEHLLKVRfvSESNLEGTR 271
Cdd:cd03289 237 SdrlKLFPRRNSSKSKRKPRPQIQALQEE--TEEEVQDTR 274
|
|
| PRK11831 |
PRK11831 |
phospholipid ABC transporter ATP-binding protein MlaF; |
1-227 |
6.62e-16 |
|
phospholipid ABC transporter ATP-binding protein MlaF;
Pssm-ID: 236997 [Multi-domain] Cd Length: 269 Bit Score: 75.96 E-value: 6.62e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 1 MNNIVIKDVNKTyDGKTYALKNINLEIKNG-MFGILGRNGSGKSTLMNMLSTILQQSSGTI-----EINNISLTQTKQIR 74
Cdd:PRK11831 5 ANLVDMRGVSFT-RGNRCIFDNISLTVPRGkITAIMGPSGIGKTTLLRLIGGQIAPDHGEIlfdgeNIPAMSRSRLYTVR 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 75 KMIGYLPQDFDFYPNMKVKETLHY-LGILSGIPKANLKINVAASLEKVNLVEHQNKKVKSLSGGMKKRLGIAQAIIHNPQ 153
Cdd:PRK11831 84 KRMSMLFQSGALFTDMNVFDNVAYpLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPD 163
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 488422644 154 VLIVDEPTAGLDPEERVRLRHLLSNL--AKDKIVIISTHIVSDIESTCENIAIL-DKGVIAyKGSIKNLIELSDNKV 227
Cdd:PRK11831 164 LIMFDEPFVGQDPITMGVLVKLISELnsALGVTCVVVSHDVPEVLSIADHAYIVaDKKIVA-HGSAQALQANPDPRV 239
|
|
| araG |
PRK11288 |
L-arabinose ABC transporter ATP-binding protein AraG; |
15-208 |
6.76e-16 |
|
L-arabinose ABC transporter ATP-binding protein AraG;
Pssm-ID: 183077 [Multi-domain] Cd Length: 501 Bit Score: 77.26 E-value: 6.76e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 15 GKTY----ALKNINLEIKNG-MFGILGRNGSGKSTLMNMLSTILQQSSGTIEINNISL---TQTKQIRKMIGYLPQDFDF 86
Cdd:PRK11288 11 GKTFpgvkALDDISFDCRAGqVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMrfaSTTAALAAGVAIIYQELHL 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 87 YPNMKVKETLhYLGILSG----IPKANLKINVAASLEKVNLVEHQNKKVKSLSGGMKKRLGIAQAIIHNPQVLIVDEPTA 162
Cdd:PRK11288 91 VPEMTVAENL-YLGQLPHkggiVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTS 169
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 488422644 163 GLDPEERVRLRHLLSNL-AKDKIVIISTHIVSDIESTCENIAILDKG 208
Cdd:PRK11288 170 SLSAREIEQLFRVIRELrAEGRVILYVSHRMEEIFALCDAITVFKDG 216
|
|
| ABCG_PDR_domain2 |
cd03232 |
Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding ... |
7-208 |
1.50e-15 |
|
Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters; The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213199 [Multi-domain] Cd Length: 192 Bit Score: 73.43 E-value: 1.50e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 7 KDVNKTYDGKTYA---LKNINLEIKNGMFGIL-GRNGSGKSTLMNMLStiLQQSSGTIE----INNISLTQTkqIRKMIG 78
Cdd:cd03232 7 KNLNYTVPVKGGKrqlLNNISGYVKPGTLTALmGESGAGKTTLLDVLA--GRKTAGVITgeilINGRPLDKN--FQRSTG 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 79 YLPQDFDFYPNMKVKETLHYLGILSGIpkanlkinvaaSLEKvnlvehqnkkvkslsggmKKRLGIAQAIIHNPQVLIVD 158
Cdd:cd03232 83 YVEQQDVHSPNLTVREALRFSALLRGL-----------SVEQ------------------RKRLTIGVELAAKPSILFLD 133
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 488422644 159 EPTAGLDPEERVRLRHLLSNLAKDKIVIIST-HIVS-DIESTCENIAILDKG 208
Cdd:cd03232 134 EPTSGLDSQAAYNIVRFLKKLADSGQAILCTiHQPSaSIFEKFDRLLLLKRG 185
|
|
| livF |
PRK11614 |
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF; |
6-166 |
1.60e-15 |
|
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF;
Pssm-ID: 183231 [Multi-domain] Cd Length: 237 Bit Score: 74.15 E-value: 1.60e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 6 IKDVNKTYdGKTYALKNINLEIKNG-MFGILGRNGSGKSTLMNMLSTILQQSSGTIEINNISLT--QTKQI-RKMIGYLP 81
Cdd:PRK11614 8 FDKVSAHY-GKIQALHEVSLHINQGeIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITdwQTAKImREAVAIVP 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 82 QDFDFYPNMKVKETLHYLGILSGIPKANLKINVAASLEKvNLVEHQNKKVKSLSGGMKKRLGIAQAIIHNPQVLIVDEPT 161
Cdd:PRK11614 87 EGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFP-RLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPS 165
|
....*
gi 488422644 162 AGLDP 166
Cdd:PRK11614 166 LGLAP 170
|
|
| PhnL |
COG4778 |
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion ... |
1-176 |
1.75e-15 |
|
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion transport and metabolism];
Pssm-ID: 443809 [Multi-domain] Cd Length: 229 Bit Score: 74.01 E-value: 1.75e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 1 MNN-IVIKDVNKTY-----DGKTY-ALKNINLEIKNGMF-GILGRNGSGKSTLMNMLSTILQQSSGTIEINN----ISLT 68
Cdd:COG4778 1 MTTlLEVENLSKTFtlhlqGGKRLpVLDGVSFSVAAGECvALTGPSGAGKSTLLKCIYGNYLPDSGSILVRHdggwVDLA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 69 Q--TKQI----RKMIGYLPQDFDFYPNMK----VKETLhylgILSGIPKANLKINVAASLEKVNLVEHqnkkvksL---- 134
Cdd:COG4778 81 QasPREIlalrRRTIGYVSQFLRVIPRVSaldvVAEPL----LERGVDREEARARARELLARLNLPER-------Lwdlp 149
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 488422644 135 ----SGGMKKRLGIAQAIIHNPQVLIVDEPTAGLDPEERVRLRHLL 176
Cdd:COG4778 150 patfSGGEQQRVNIARGFIADPPLLLLDEPTASLDAANRAVVVELI 195
|
|
| nikE |
PRK10419 |
nickel ABC transporter ATP-binding protein NikE; |
20-210 |
2.46e-15 |
|
nickel ABC transporter ATP-binding protein NikE;
Pssm-ID: 236689 [Multi-domain] Cd Length: 268 Bit Score: 74.34 E-value: 2.46e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 20 LKNINLEIKNG-MFGILGRNGSGKSTLMNMLSTILQQSSGTIEINNISLT-----QTKQIRKMIGYLPQDF--DFYPNMK 91
Cdd:PRK10419 28 LNNVSLSLKSGeTVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAklnraQRKAFRRDIQMVFQDSisAVNPRKT 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 92 VKETL-----HylgiLSGIPKANLKINVAASLEKVNL-VEHQNKKVKSLSGGMKKRLGIAQAIIHNPQVLIVDEPTAGLD 165
Cdd:PRK10419 108 VREIIreplrH----LLSLDKAERLARASEMLRAVDLdDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLD 183
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 488422644 166 PEERVRLRHLLSNLAK--DKIVIISTHIVSDIESTCENIAILDKGVI 210
Cdd:PRK10419 184 LVLQAGVIRLLKKLQQqfGTACLFITHDLRLVERFCQRVMVMDNGQI 230
|
|
| PRK10584 |
PRK10584 |
putative ABC transporter ATP-binding protein YbbA; Provisional |
34-190 |
3.11e-15 |
|
putative ABC transporter ATP-binding protein YbbA; Provisional
Pssm-ID: 182569 [Multi-domain] Cd Length: 228 Bit Score: 73.27 E-value: 3.11e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 34 ILGRNGSGKSTLMNMLSTILQQSSGTIEINNISLT-----QTKQIR-KMIGYLPQDFDFYPNMKVKETLHYLGILSGIPK 107
Cdd:PRK10584 41 LIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHqmdeeARAKLRaKHVGFVFQSFMLIPTLNALENVELPALLRGESS 120
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 108 ANLKINVAASLEKVNLVEHQNKKVKSLSGGMKKRLGIAQAIIHNPQVLIVDEPTAGLDPEERVRLRHLLSNLAKD--KIV 185
Cdd:PRK10584 121 RQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREhgTTL 200
|
....*
gi 488422644 186 IISTH 190
Cdd:PRK10584 201 ILVTH 205
|
|
| thiQ |
PRK10771 |
thiamine ABC transporter ATP-binding protein ThiQ; |
24-220 |
3.40e-15 |
|
thiamine ABC transporter ATP-binding protein ThiQ;
Pssm-ID: 182716 [Multi-domain] Cd Length: 232 Bit Score: 73.08 E-value: 3.40e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 24 NLEIKNG-MFGILGRNGSGKSTLMNMLSTILQQSSGTIEINNISLTQTKQIRKMIGYLPQDFDFYPNMKVKETLHyLGIL 102
Cdd:PRK10771 19 DLTVERGeRVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIG-LGLN 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 103 SGipkanLKIN------VAASLEKVNLVEHQNKKVKSLSGGMKKRLGIAQAIIHNPQVLIVDEPTAGLDPEERVRLRHLL 176
Cdd:PRK10771 98 PG-----LKLNaaqrekLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLV 172
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 488422644 177 SNLAKDK---IVIIStHIVSDIESTCENIAILDKGVIAYKGSIKNLI 220
Cdd:PRK10771 173 SQVCQERqltLLMVS-HSLEDAARIAPRSLVVADGRIAWDGPTDELL 218
|
|
| ABC_CcmA_heme_exporter |
cd03231 |
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the ... |
34-191 |
3.96e-15 |
|
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Pssm-ID: 213198 [Multi-domain] Cd Length: 201 Bit Score: 72.53 E-value: 3.96e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 34 ILGRNGSGKSTLMNMLSTILQQSSGTIEINNISLTQTKQIrkmigylpqdfdfypnmkVKETLHYLGILSGI-----PKA 108
Cdd:cd03231 31 VTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDS------------------IARGLLYLGHAPGIkttlsVLE 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 109 NLKI--------NVAASLEKVNLVEHQNKKVKSLSGGMKKRLGIAQAIIHNPQVLIVDEPTAGLDPEERVRL-RHLLSNL 179
Cdd:cd03231 93 NLRFwhadhsdeQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFaEAMAGHC 172
|
170
....*....|..
gi 488422644 180 AKDKIVIISTHI 191
Cdd:cd03231 173 ARGGMVVLTTHQ 184
|
|
| AppF |
COG4608 |
ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]; ... |
19-165 |
7.84e-15 |
|
ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443658 [Multi-domain] Cd Length: 329 Bit Score: 73.61 E-value: 7.84e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 19 ALKNINLEIKNG-MFGILGRNGSGKSTLMNMLSTILQQSSGTI-----EINNISLTQTKQIRKMIGYLPQD----FDfyP 88
Cdd:COG4608 33 AVDGVSFDIRRGeTLGLVGESGCGKSTLGRLLLRLEEPTSGEIlfdgqDITGLSGRELRPLRRRMQMVFQDpyasLN--P 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 89 NMKVKETL------HylGILsgiPKANLKINVAASLEKVNL-VEHQNKKVKSLSGGMKKRLGIAQAIIHNPQVLIVDEPT 161
Cdd:COG4608 111 RMTVGDIIaeplriH--GLA---SKAERRERVAELLELVGLrPEHADRYPHEFSGGQRQRIGIARALALNPKLIVCDEPV 185
|
....
gi 488422644 162 AGLD 165
Cdd:COG4608 186 SALD 189
|
|
| oppD |
PRK09473 |
oligopeptide transporter ATP-binding component; Provisional |
6-214 |
8.50e-15 |
|
oligopeptide transporter ATP-binding component; Provisional
Pssm-ID: 181888 [Multi-domain] Cd Length: 330 Bit Score: 73.22 E-value: 8.50e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 6 IKDVN---KTYDGKTYALKNINLEIKNG-MFGILGRNGSGKS----TLMNMLStilqqSSGTI---------EINNISLT 68
Cdd:PRK09473 15 VKDLRvtfSTPDGDVTAVNDLNFSLRAGeTLGIVGESGSGKSqtafALMGLLA-----ANGRIggsatfngrEILNLPEK 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 69 QTKQIR-KMIGYLPQD--FDFYPNMKVKETLHYLGIL-SGIPKANLKINVAASLEKVNLVEHQnKKVK----SLSGGMKK 140
Cdd:PRK09473 90 ELNKLRaEQISMIFQDpmTSLNPYMRVGEQLMEVLMLhKGMSKAEAFEESVRMLDAVKMPEAR-KRMKmyphEFSGGMRQ 168
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 488422644 141 RLGIAQAIIHNPQVLIVDEPTAGLDPEERVRLRHLLSNLAKD--KIVIISTHIVSDIESTCeniailDKGVIAYKG 214
Cdd:PRK09473 169 RVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREfnTAIIMITHDLGVVAGIC------DKVLVMYAG 238
|
|
| ABC_ABC_ChvD |
TIGR03719 |
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of ... |
3-193 |
1.33e-14 |
|
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Pssm-ID: 274744 [Multi-domain] Cd Length: 552 Bit Score: 73.82 E-value: 1.33e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 3 NIVI--KDVNKTYDGKTYaLKNINLEI-KNGMFGILGRNGSGKSTLMNMLSTILQQSSGTIEINnisltQTKQIrkmiGY 79
Cdd:TIGR03719 320 DKVIeaENLTKAFGDKLL-IDDLSFKLpPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIEIG-----ETVKL----AY 389
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 80 LPQDFD-FYPNMKVKETLHylGILSGIPKANLKINVAASLEKVNLV-EHQNKKVKSLSGGMKKRLGIAQAIIHNPQVLIV 157
Cdd:TIGR03719 390 VDQSRDaLDPNKTVWEEIS--GGLDIIKLGKREIPSRAYVGRFNFKgSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLL 467
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 488422644 158 DEPTAGLDPEERVRLRHLLSNLAKDKIVI---------ISTHIVS 193
Cdd:TIGR03719 468 DEPTNDLDVETLRALEEALLNFAGCAVVIshdrwfldrIATHILA 512
|
|
| PRK13549 |
PRK13549 |
xylose transporter ATP-binding subunit; Provisional |
1-208 |
1.37e-14 |
|
xylose transporter ATP-binding subunit; Provisional
Pssm-ID: 184134 [Multi-domain] Cd Length: 506 Bit Score: 73.42 E-value: 1.37e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 1 MNNIVikdvnKTYDGKTyALKNINLEIKNG-MFGILGRNGSGKSTLMNMLSTILQQSSGTIEI---------NNISLTQt 70
Cdd:PRK13549 8 MKNIT-----KTFGGVK-ALDNVSLKVRAGeIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIifegeelqaSNIRDTE- 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 71 kqiRKMIGYLPQDFDFYPNMKVKETLhYLG--ILSG--IPKANLKINVAASLEKVNLVEHQNKKVKSLSGGMKKRLGIAQ 146
Cdd:PRK13549 81 ---RAGIAIIHQELALVKELSVLENI-FLGneITPGgiMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAK 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 488422644 147 AIIHNPQVLIVDEPTAGLDPEERVRLRHLLSNLAKDKI--VIIStHIVSDIESTCENIAILDKG 208
Cdd:PRK13549 157 ALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIacIYIS-HKLNEVKAISDTICVIRDG 219
|
|
| MK0520 |
COG2401 |
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction ... |
4-208 |
1.43e-14 |
|
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only];
Pssm-ID: 441957 [Multi-domain] Cd Length: 222 Bit Score: 71.14 E-value: 1.43e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 4 IVIKDVNKTYDG-KTYALKNINLEIKNGMFG-ILGRNGSGKSTLMNMLSTIL--QQSSGTIEInnisltqtkqirkmigy 79
Cdd:COG2401 29 IVLEAFGVELRVvERYVLRDLNLEIEPGEIVlIVGASGSGKSTLLRLLAGALkgTPVAGCVDV----------------- 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 80 lpQDFDFYPNmkvketlhyLGILSGIPKANLKINVAASLEKVNLVEHQN--KKVKSLSGGMKKRLGIAQAIIHNPQVLIV 157
Cdd:COG2401 92 --PDNQFGRE---------ASLIDAIGRKGDFKDAVELLNAVGLSDAVLwlRRFKELSTGQKFRFRLALLLAERPKLLVI 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 488422644 158 DEPTAGLDPEERVRLRHLLSNLAKDK---IVIISTH--IVSDIEStcENIAILDKG 208
Cdd:COG2401 161 DEFCSHLDRQTAKRVARNLQKLARRAgitLVVATHHydVIDDLQP--DLLIFVGYG 214
|
|
| ModC |
COG4148 |
ABC-type molybdate transport system, ATPase component ModC [Inorganic ion transport and ... |
29-211 |
1.55e-14 |
|
ABC-type molybdate transport system, ATPase component ModC [Inorganic ion transport and metabolism]; ABC-type molybdate transport system, ATPase component ModC is part of the Pathway/BioSystem: Molybdopterin biosynthesis
Pssm-ID: 443319 [Multi-domain] Cd Length: 358 Bit Score: 72.83 E-value: 1.55e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 29 NGMFGILGRNGSGKSTLMNMLSTILQQSSGTIEINNISLTQTKQIRKM------IGYLPQD---FdfyPNMKVKETLHYl 99
Cdd:COG4148 25 RGVTALFGPSGSGKTTLLRAIAGLERPDSGRIRLGGEVLQDSARGIFLpphrrrIGYVFQEarlF---PHLSVRGNLLY- 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 100 GiLSGIPKANLKINVAASLEKVNLVEHQNKKVKSLSGGMKKRLGIAQAIIHNPQVLIVDEPTAGLDPEERVRLRHLLSNL 179
Cdd:COG4148 101 G-RKRAPRAERRISFDEVVELLGIGHLLDRRPATLSGGERQRVAIGRALLSSPRLLLMDEPLAALDLARKAEILPYLERL 179
|
170 180 190
....*....|....*....|....*....|....*
gi 488422644 180 AKD-KI-VIISTHIVSDIESTCENIAILDKG-VIA 211
Cdd:COG4148 180 RDElDIpILYVSHSLDEVARLADHVVLLEQGrVVA 214
|
|
| 40850658_otr |
NF000106 |
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit; |
2-219 |
3.44e-14 |
|
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit;
Pssm-ID: 411078 [Multi-domain] Cd Length: 351 Bit Score: 71.69 E-value: 3.44e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 2 NNIVIKDVNKTYdGKTYALKNINLEIKNG-MFGILGRNGSGKSTlMNMLSTILQQSSGTIEINNISLTQTKQ-IRKMIG- 78
Cdd:NF000106 12 NAVEVRGLVKHF-GEVKAVDGVDLDVREGtVLGVLGP*GAA**R-GALPAHV*GPDAGRRPWRF*TWCANRRaLRRTIG* 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 79 YLPQDFDFYPNMKVKETLHYLGILSGIPKANLKINVAASLEKVNLVEHQNKKVKSLSGGMKKRLGIAQAIIHNPQVLIVD 158
Cdd:NF000106 90 HRPVR*GRRESFSGRENLYMIGR*LDLSRKDARARADELLERFSLTEAAGRAAAKYSGGMRRRLDLAASMIGRPAVLYLD 169
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 488422644 159 EPTAGLDPEERVRLRHLLSNLAKD-KIVIISTHIVSDIESTCENIAILDKGVIAYKGSIKNL 219
Cdd:NF000106 170 EPTTGLDPRTRNEVWDEVRSMVRDgATVLLTTQYMEEAEQLAHELTVIDRGRVIADGKVDEL 231
|
|
| PRK10789 |
PRK10789 |
SmdA family multidrug ABC transporter permease/ATP-binding protein; |
19-221 |
5.20e-14 |
|
SmdA family multidrug ABC transporter permease/ATP-binding protein;
Pssm-ID: 182732 [Multi-domain] Cd Length: 569 Bit Score: 72.05 E-value: 5.20e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 19 ALKNINLEIKNG-MFGILGRNGSGKSTLMNMLSTILQQSSGTIEINNISLTQTK--QIRKMIGYLPQD-FDFYPNMKVKe 94
Cdd:PRK10789 330 ALENVNFTLKPGqMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQldSWRSRLAVVSQTpFLFSDTVANN- 408
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 95 tlhylgILSGIPKAN-LKINVAASLEKV-----NLVEHQNKKVKS----LSGGMKKRLGIAQAIIHNPQVLIVDEPTAGL 164
Cdd:PRK10789 409 ------IALGRPDATqQEIEHVARLASVhddilRLPQGYDTEVGErgvmLSGGQKQRISIARALLLNAEILILDDALSAV 482
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 488422644 165 DPEERVRLRHLLSNLAKDKIVIISTHIVSDIeSTCENIAILDKGVIAYKGSIKNLIE 221
Cdd:PRK10789 483 DGRTEHQILHNLRQWGEGRTVIISAHRLSAL-TEASEILVMQHGHIAQRGNHDQLAQ 538
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
19-211 |
5.50e-14 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 71.59 E-value: 5.50e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 19 ALKNINLEIKNG-MFGILGRNGSGKSTLMNMLSTILQQSSGTIEINN--ISLTQTKQ-IRKMIGYLPQD------FdfyP 88
Cdd:COG1129 267 VVRDVSFSVRAGeILGIAGLVGAGRTELARALFGADPADSGEIRLDGkpVRIRSPRDaIRAGIAYVPEDrkgeglV---L 343
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 89 NMKVKE-----TLHYLGILSGIPKANLKINVAASLEKVNL-VEHQNKKVKSLSGGMKKRLGIAQAIIHNPQVLIVDEPTA 162
Cdd:COG1129 344 DLSIREnitlaSLDRLSRGGLLDRRRERALAEEYIKRLRIkTPSPEQPVGNLSGGNQQKVVLAKWLATDPKVLILDEPTR 423
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 488422644 163 GLDPEERVRLRHLLSNLAKDK--IVIISthivSDIE---STCENIAILDKGVIA 211
Cdd:COG1129 424 GIDVGAKAEIYRLIRELAAEGkaVIVIS----SELPellGLSDRILVMREGRIV 473
|
|
| PRK15112 |
PRK15112 |
peptide ABC transporter ATP-binding protein SapF; |
6-179 |
5.52e-14 |
|
peptide ABC transporter ATP-binding protein SapF;
Pssm-ID: 185067 [Multi-domain] Cd Length: 267 Bit Score: 70.20 E-value: 5.52e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 6 IKDVNKTYDGKT--------YALKNINLEIKNGM-FGILGRNGSGKSTLMNMLSTILQQSSGTIEINNISLT------QT 70
Cdd:PRK15112 7 VRNLSKTFRYRTgwfrrqtvEAVKPLSFTLREGQtLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHfgdysyRS 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 71 KQIRkMIGYLPQDfDFYPNMKVKETLHY-LGILSGIPKANLKINVAASLEKVNLV-EHQNKKVKSLSGGMKKRLGIAQAI 148
Cdd:PRK15112 87 QRIR-MIFQDPST-SLNPRQRISQILDFpLRLNTDLEPEQREKQIIETLRQVGLLpDHASYYPHMLAPGQKQRLGLARAL 164
|
170 180 190
....*....|....*....|....*....|.
gi 488422644 149 IHNPQVLIVDEPTAGLDPEERVRLRHLLSNL 179
Cdd:PRK15112 165 ILRPKVIIADEALASLDMSMRSQLINLMLEL 195
|
|
| ABC_ABC_ChvD |
TIGR03719 |
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of ... |
6-214 |
6.22e-14 |
|
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Pssm-ID: 274744 [Multi-domain] Cd Length: 552 Bit Score: 71.50 E-value: 6.22e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 6 IKDVNKTYDGKTYALKNINLEIKNGM-FGILGRNGSGKSTLMNMLSTILQQSSGTIEIN-NISltqtkqirkmIGYLPQD 83
Cdd:TIGR03719 7 MNRVSKVVPPKKEILKDISLSFFPGAkIGVLGLNGAGKSTLLRIMAGVDKDFNGEARPQpGIK----------VGYLPQE 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 84 FDFYPNMKVKETlhylgILSGIPKanlKINVAASLEKVN------------LVEHQNK---------------------- 129
Cdd:TIGR03719 77 PQLDPTKTVREN-----VEEGVAE---IKDALDRFNEISakyaepdadfdkLAAEQAElqeiidaadawdldsqleiamd 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 130 ---------KVKSLSGGMKKRLGIAQAIIHNPQVLIVDEPTAGLDPEERVRLRHLLSNLAkdKIVIISTHIVSDIESTCE 200
Cdd:TIGR03719 149 alrcppwdaDVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLERHLQEYP--GTVVAVTHDRYFLDNVAG 226
|
250
....*....|....*
gi 488422644 201 NIAILDKGV-IAYKG 214
Cdd:TIGR03719 227 WILELDRGRgIPWEG 241
|
|
| xylG |
TIGR02633 |
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ... |
1-208 |
9.60e-14 |
|
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131681 [Multi-domain] Cd Length: 500 Bit Score: 71.01 E-value: 9.60e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 1 MNNIVikdvnKTYDGKTyALKNINLEIKNG-MFGILGRNGSGKSTLMNMLSTILQQSSGTIEI---------NNISLTQt 70
Cdd:TIGR02633 4 MKGIV-----KTFGGVK-ALDGIDLEVRPGeCVGLCGENGAGKSTLMKILSGVYPHGTWDGEIywsgsplkaSNIRDTE- 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 71 kqiRKMIGYLPQDFDFYPNMKVKETL---HYLGILSGIPKANLKINVAASLEKVNLVEHQN--KKVKSLSGGMKKRLGIA 145
Cdd:TIGR02633 77 ---RAGIVIIHQELTLVPELSVAENIflgNEITLPGGRMAYNAMYLRAKNLLRELQLDADNvtRPVGDYGGGQQQLVEIA 153
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 488422644 146 QAIIHNPQVLIVDEPTAGLDPEERVRLRHLLSNLAKDKIVIIS-THIVSDIESTCENIAILDKG 208
Cdd:TIGR02633 154 KALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYiSHKLNEVKAVCDTICVIRDG 217
|
|
| PRK13538 |
PRK13538 |
cytochrome c biogenesis heme-transporting ATPase CcmA; |
22-190 |
1.09e-13 |
|
cytochrome c biogenesis heme-transporting ATPase CcmA;
Pssm-ID: 184125 [Multi-domain] Cd Length: 204 Bit Score: 68.29 E-value: 1.09e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 22 NINLEIKNG-MFGILGRNGSGKSTLMNMLSTILQQSSGTIEINNisltqtKQIRKmigylpQDFDFYPNmkvketLHYLG 100
Cdd:PRK13538 19 GLSFTLNAGeLVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQG------EPIRR------QRDEYHQD------LLYLG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 101 ILSGI-----PKANLKINVAAS-----------LEKVNLVEHQNKKVKSLSGGMKKRLGIAQAIIHNPQVLIVDEPTAGL 164
Cdd:PRK13538 81 HQPGIkteltALENLRFYQRLHgpgddealweaLAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAI 160
|
170 180
....*....|....*....|....*..
gi 488422644 165 DPEERVRL-RHLLSNLAKDKIVIISTH 190
Cdd:PRK13538 161 DKQGVARLeALLAQHAEQGGMVILTTH 187
|
|
| CP_lyasePhnK |
TIGR02323 |
phosphonate C-P lyase system protein PhnK; Members of this family are the PhnK protein of C-P ... |
6-190 |
1.15e-13 |
|
phosphonate C-P lyase system protein PhnK; Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. [Central intermediary metabolism, Phosphorus compounds]
Pssm-ID: 188208 [Multi-domain] Cd Length: 253 Bit Score: 69.09 E-value: 1.15e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 6 IKDVNKTYdGKTYALKNINLEIKNG-MFGILGRNGSGKSTLMNMLSTILQQSSGTIEINNIS--------LTQTKQIRKM 76
Cdd:TIGR02323 6 VSGLSKSY-GGGKGCRDVSFDLYPGeVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSgaelelyqLSEAERRRLM 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 77 ---IGYLPQD------FDFYPNMKVKETLHYLGILSgipKANLKINVAASLEKVNLVEHQ-NKKVKSLSGGMKKRLGIAQ 146
Cdd:TIGR02323 85 rteWGFVHQNprdglrMRVSAGANIGERLMAIGARH---YGNIRATAQDWLEEVEIDPTRiDDLPRAFSGGMQQRLQIAR 161
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 488422644 147 AIIHNPQVLIVDEPTAGLDPEERVRLRHLLSNLAKDK--IVIISTH 190
Cdd:TIGR02323 162 NLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLglAVIIVTH 207
|
|
| BtuD |
COG4138 |
ABC-type cobalamin transport system, ATPase component BtuD [Coenzyme transport and metabolism]; ... |
34-232 |
1.22e-13 |
|
ABC-type cobalamin transport system, ATPase component BtuD [Coenzyme transport and metabolism];
Pssm-ID: 443313 [Multi-domain] Cd Length: 248 Bit Score: 69.10 E-value: 1.22e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 34 ILGRNGSGKSTLMNMLSTILqQSSGTIEINNISLTQ--TKQIRKMIGYLPQDFDFYPNMKVketLHY--LGILSGIPKAN 109
Cdd:COG4138 27 LIGPNGAGKSTLLARMAGLL-PGQGEILLNGRPLSDwsAAELARHRAYLSQQQSPPFAMPV---FQYlaLHQPAGASSEA 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 110 LKINVAASLEKVNLVEHQNKKVKSLSGGMKKRLGIAQAI--IH---NP--QVLIVDEPTAGLDPEERVRLRHLLSNLAKD 182
Cdd:COG4138 103 VEQLLAQLAEALGLEDKLSRPLTQLSGGEWQRVRLAAVLlqVWptiNPegQLLLLDEPMNSLDVAQQAALDRLLRELCQQ 182
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 488422644 183 KI-VIISTHivsDIESTC---ENIAILDKGVIAYKGSIKNLIE---LSdnKVYEITI 232
Cdd:COG4138 183 GItVVMSSH---DLNHTLrhaDRVWLLKQGKLVASGETAEVMTpenLS--EVFGVKF 234
|
|
| YddA |
COG4178 |
ABC-type uncharacterized transport system, permease and ATPase components [General function ... |
2-186 |
1.31e-13 |
|
ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only];
Pssm-ID: 443337 [Multi-domain] Cd Length: 571 Bit Score: 70.61 E-value: 1.31e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 2 NNIVIKDVN-KTYDGKTYaLKNINLEIKNGMfGIL--GRNGSGKSTLMNMLSTILQQSSGTIEINnisltqtkQIRKMIg 78
Cdd:COG4178 361 GALALEDLTlRTPDGRPL-LEDLSLSLKPGE-RLLitGPSGSGKSTLLRAIAGLWPYGSGRIARP--------AGARVL- 429
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 79 YLPQDfdfyPNMKV---KETLHYlgilsgiPKANLKIN---VAASLEKVNL---VEHQNKKV---KSLSGGMKKRLGIAQ 146
Cdd:COG4178 430 FLPQR----PYLPLgtlREALLY-------PATAEAFSdaeLREALEAVGLghlAERLDEEAdwdQVLSLGEQQRLAFAR 498
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 488422644 147 AIIHNPQVLIVDEPTAGLDPEERVRLRHLLSNLAKDKIVI 186
Cdd:COG4178 499 LLLHKPDWLFLDEATSALDEENEAALYQLLREELPGTTVI 538
|
|
| PRK03695 |
PRK03695 |
vitamin B12-transporter ATPase; Provisional |
34-190 |
1.97e-13 |
|
vitamin B12-transporter ATPase; Provisional
Pssm-ID: 235150 [Multi-domain] Cd Length: 248 Bit Score: 68.42 E-value: 1.97e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 34 ILGRNGSGKSTLMNMLSTILQqSSGTIEINNISLTQ--TKQIRKMIGYLPQDFDFYPNMKVketLHYLGiLSGIPKANLK 111
Cdd:PRK03695 27 LVGPNGAGKSTLLARMAGLLP-GSGSIQFAGQPLEAwsAAELARHRAYLSQQQTPPFAMPV---FQYLT-LHQPDKTRTE 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 112 INVAASLEKVNLVEHQNK---KVKSLSGGMKKRLGIAQAI--IH---NP--QVLIVDEPTAGLDPEERVRLRHLLSNLAK 181
Cdd:PRK03695 102 AVASALNEVAEALGLDDKlgrSVNQLSGGEWQRVRLAAVVlqVWpdiNPagQLLLLDEPMNSLDVAQQAALDRLLSELCQ 181
|
170
....*....|
gi 488422644 182 DKI-VIISTH 190
Cdd:PRK03695 182 QGIaVVMSSH 191
|
|
| PRK10261 |
PRK10261 |
glutathione transporter ATP-binding protein; Provisional |
18-221 |
2.06e-13 |
|
glutathione transporter ATP-binding protein; Provisional
Pssm-ID: 182342 [Multi-domain] Cd Length: 623 Bit Score: 70.27 E-value: 2.06e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 18 YALKNINLEIKNG-MFGILGRNGSGKSTLMNMLSTILQQSSGTI-----EINNISLTQTKQIRKMIGYLPQDFdfYPNMK 91
Cdd:PRK10261 338 HAVEKVSFDLWPGeTLSLVGESGSGKSTTGRALLRLVESQGGEIifngqRIDTLSPGKLQALRRDIQFIFQDP--YASLD 415
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 92 VKETLHYL--------GILSGIPKANlkiNVAASLEKVNLV-EHQNKKVKSLSGGMKKRLGIAQAIIHNPQVLIVDEPTA 162
Cdd:PRK10261 416 PRQTVGDSimeplrvhGLLPGKAAAA---RVAWLLERVGLLpEHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVS 492
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 488422644 163 GLDPEERVRLRHLLSNLAKD---KIVIIStHIVSDIESTCENIAILDKGVIAYKGSIKNLIE 221
Cdd:PRK10261 493 ALDVSIRGQIINLLLDLQRDfgiAYLFIS-HDMAVVERISHRVAVMYLGQIVEIGPRRAVFE 553
|
|
| CFTR_protein |
TIGR01271 |
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis ... |
12-271 |
2.06e-13 |
|
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. [Transport and binding proteins, Anions]
Pssm-ID: 273530 [Multi-domain] Cd Length: 1490 Bit Score: 70.32 E-value: 2.06e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 12 TYDGKTyALKNINLEIKNGM-FGILGRNGSGKSTLMNMLSTILqQSSGTIEINNISLTQT--KQIRKMIGYLPQDF---- 84
Cdd:TIGR01271 1228 TEAGRA-VLQDLSFSVEGGQrVGLLGRTGSGKSTLLSALLRLL-STEGEIQIDGVSWNSVtlQTWRKAFGVIPQKVfifs 1305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 85 -DFYPNMKVKETLHYLGILSGIPKANLKINVAASLEKVNLVEHQNKKVksLSGGMKKRLGIAQAIIHNPQVLIVDEPTAG 163
Cdd:TIGR01271 1306 gTFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYV--LSNGHKQLMCLARSILSKAKILLLDEPSAH 1383
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 164 LDPEERVRLRHLLSNLAKDKIVIISTHIVSDIEStCENIAILDKGVIAYKGSIKNLieLSDNKVYEITISPS---KLNQL 240
Cdd:TIGR01271 1384 LDPVTLQIIRKTLKQSFSNCTVILSEHRVEALLE-CQQFLVIEGSSVKQYDSIQKL--LNETSLFKQAMSAAdrlKLFPL 1460
|
250 260 270
....*....|....*....|....*....|.
gi 488422644 241 KKNNifITKIQEYEHLLKVRFVSESNLEGTR 271
Cdd:TIGR01271 1461 HRRN--SSKRKPQPKITALREEAEEEVQNTR 1489
|
|
| phnK |
PRK11701 |
phosphonate C-P lyase system protein PhnK; Provisional |
5-190 |
2.37e-13 |
|
phosphonate C-P lyase system protein PhnK; Provisional
Pssm-ID: 183280 [Multi-domain] Cd Length: 258 Bit Score: 68.41 E-value: 2.37e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 5 VIKDVNKTYdGKTYALKNINLEIKNG-MFGILGRNGSGKSTLMNMLSTILQQSSGTIEINNIS------LTQTKQIRKMI 77
Cdd:PRK11701 8 SVRGLTKLY-GPRKGCRDVSFDLYPGeVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDgqlrdlYALSEAERRRL 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 78 -----GYLPQDfdfyP----NMKVK------ETL------HYlgilsgipkANLKINVAASLEKVNL-VEHQNKKVKSLS 135
Cdd:PRK11701 87 lrtewGFVHQH----PrdglRMQVSaggnigERLmavgarHY---------GDIRATAGDWLERVEIdAARIDDLPTTFS 153
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 488422644 136 GGMKKRLGIAQAIIHNPQVLIVDEPTAGLDPEERVRLRHLLSNLAKDK--IVIISTH 190
Cdd:PRK11701 154 GGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELglAVVIVTH 210
|
|
| dppF |
PRK11308 |
dipeptide transporter ATP-binding subunit; Provisional |
19-182 |
2.47e-13 |
|
dipeptide transporter ATP-binding subunit; Provisional
Pssm-ID: 236898 [Multi-domain] Cd Length: 327 Bit Score: 69.22 E-value: 2.47e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 19 ALKNINLEIKNG-MFGILGRNGSGKSTLMNMLSTILQQSSGTIEINNISLTQT-----KQIRKMIGYLPQD--FDFYPNM 90
Cdd:PRK11308 30 ALDGVSFTLERGkTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKAdpeaqKLLRQKIQIVFQNpyGSLNPRK 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 91 KVKETLHY-LGILSGIPKANLKINVAASLEKVNL-VEHQNKKVKSLSGGMKKRLGIAQAIIHNPQVLIVDEPTAGLDPEE 168
Cdd:PRK11308 110 KVGQILEEpLLINTSLSAAERREKALAMMAKVGLrPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSV 189
|
170
....*....|....
gi 488422644 169 RVRLRHLLSNLAKD 182
Cdd:PRK11308 190 QAQVLNLMMDLQQE 203
|
|
| ABC_RNaseL_inhibitor_domain2 |
cd03237 |
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI) ... |
12-186 |
2.81e-13 |
|
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213204 [Multi-domain] Cd Length: 246 Bit Score: 67.82 E-value: 2.81e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 12 TYDGKTYALKNINLEIKNGMF------GILGRNGSGKSTLMNMLSTILQQSSGTIEINNISltqtkqirkmIGYLPQdfd 85
Cdd:cd03237 2 TYPTMKKTLGEFTLEVEGGSIseseviGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDT----------VSYKPQ--- 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 86 fYPNMKVKETLHYLgiLSGIPK-----ANLKINVAASLEKVNLVEHQnkkVKSLSGGMKKRLGIAQAIIHNPQVLIVDEP 160
Cdd:cd03237 69 -YIKADYEGTVRDL--LSSITKdfythPYFKTEIAKPLQIEQILDRE---VPELSGGELQRVAIAACLSKDADIYLLDEP 142
|
170 180 190
....*....|....*....|....*....|
gi 488422644 161 TAGLDPEERVR----LRHLLSNLAKDKIVI 186
Cdd:cd03237 143 SAYLDVEQRLMaskvIRRFAENNEKTAFVV 172
|
|
| ABCG_PDR_domain1 |
cd03233 |
First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette ... |
16-165 |
3.65e-13 |
|
First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters; The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213200 [Multi-domain] Cd Length: 202 Bit Score: 66.90 E-value: 3.65e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 16 KTYALKNINLEIKNG-MFGILGRNGSGKSTLMNMLSTILQ---QSSGTIEINNISLTQTKQI-RKMIGYLPQDFDFYPNM 90
Cdd:cd03233 19 KIPILKDFSGVVKPGeMVLVLGRPGSGCSTLLKALANRTEgnvSVEGDIHYNGIPYKEFAEKyPGEIIYVSEEDVHFPTL 98
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 488422644 91 KVKETLHYLGILSGipkanlkinvaaslekvnlvehqNKKVKSLSGGMKKRLGIAQAIIHNPQVLIVDEPTAGLD 165
Cdd:cd03233 99 TVRETLDFALRCKG-----------------------NEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLD 150
|
|
| YejF |
COG4172 |
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ... |
19-165 |
4.82e-13 |
|
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443332 [Multi-domain] Cd Length: 533 Bit Score: 68.94 E-value: 4.82e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 19 ALKNINLEIKNG-MFGILGRNGSGKSTL-MNMLStiLQQSSGTI-----EINNISLTQTKQIRKMIGYLPQD----FDfy 87
Cdd:COG4172 301 AVDGVSLTLRRGeTLGLVGESGSGKSTLgLALLR--LIPSEGEIrfdgqDLDGLSRRALRPLRRRMQVVFQDpfgsLS-- 376
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 88 PNMKVKET----LHYLGIlsGIPKANLKINVAASLEKVNLVE-------HQnkkvksLSGGMKKRLGIAQAIIHNPQVLI 156
Cdd:COG4172 377 PRMTVGQIiaegLRVHGP--GLSAAERRARVAEALEEVGLDPaarhrypHE------FSGGQRQRIAIARALILEPKLLV 448
|
....*....
gi 488422644 157 VDEPTAGLD 165
Cdd:COG4172 449 LDEPTSALD 457
|
|
| PRK15064 |
PRK15064 |
ABC transporter ATP-binding protein; Provisional |
2-215 |
7.66e-13 |
|
ABC transporter ATP-binding protein; Provisional
Pssm-ID: 237894 [Multi-domain] Cd Length: 530 Bit Score: 68.38 E-value: 7.66e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 2 NNIVIKDVNKTYDGKTYaLKNINLEIKNG-MFGILGRNGSGKSTLMNMLSTILQQSSGTIE-INNISltqtkqirkmIGY 79
Cdd:PRK15064 318 NALEVENLTKGFDNGPL-FKNLNLLLEAGeRLAIIGENGVGKTTLLRTLVGELEPDSGTVKwSENAN----------IGY 386
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 80 LPQD--FDFYPNMKVKETLH--------------YLGIL--SGipkanlkinvaaslekvnlvEHQNKKVKSLSGGMKKR 141
Cdd:PRK15064 387 YAQDhaYDFENDLTLFDWMSqwrqegddeqavrgTLGRLlfSQ--------------------DDIKKSVKVLSGGEKGR 446
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 142 LGIAQAIIHNPQVLIVDEPTAGLDPEERVRLrhllsNLAKDK---IVIISTH---IVSDIESTCenIAILDKGVIAYKGS 215
Cdd:PRK15064 447 MLFGKLMMQKPNVLVMDEPTNHMDMESIESL-----NMALEKyegTLIFVSHdreFVSSLATRI--IEITPDGVVDFSGT 519
|
|
| PRK13409 |
PRK13409 |
ribosome biogenesis/translation initiation ATPase RLI; |
33-206 |
8.58e-13 |
|
ribosome biogenesis/translation initiation ATPase RLI;
Pssm-ID: 184037 [Multi-domain] Cd Length: 590 Bit Score: 68.30 E-value: 8.58e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 33 GILGRNGSGKSTLMNMLS-----------------TILQQSSGTIEINNISLTQTKQIR-----KMIGYLPQDFDfypnM 90
Cdd:PRK13409 103 GILGPNGIGKTTAVKILSgelipnlgdyeeepswdEVLKRFRGTELQNYFKKLYNGEIKvvhkpQYVDLIPKVFK----G 178
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 91 KVKEtlhylgILSGIPKANLKINVAASLEKVNLVehqNKKVKSLSGGMKKRLGIAQAIIHNPQVLIVDEPTAGLDPEERV 170
Cdd:PRK13409 179 KVRE------LLKKVDERGKLDEVVERLGLENIL---DRDISELSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRL 249
|
170 180 190
....*....|....*....|....*....|....*.
gi 488422644 171 RLRHLLSNLAKDKIVIISTHivsdiestceNIAILD 206
Cdd:PRK13409 250 NVARLIRELAEGKYVLVVEH----------DLAVLD 275
|
|
| MRP_assoc_pro |
TIGR00957 |
multi drug resistance-associated protein (MRP); This model describes multi drug ... |
20-221 |
1.34e-12 |
|
multi drug resistance-associated protein (MRP); This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. [Transport and binding proteins, Other]
Pssm-ID: 188098 [Multi-domain] Cd Length: 1522 Bit Score: 68.05 E-value: 1.34e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 20 LKNINLEIKNG-MFGILGRNGSGKSTLMNMLSTILQQSSGTIEIN--NISLTQTKQIRKMIGYLPQD---FDFYPNMKVK 93
Cdd:TIGR00957 1302 LRHINVTIHGGeKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDglNIAKIGLHDLRFKITIIPQDpvlFSGSLRMNLD 1381
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 94 ETLHYLG--ILSGIPKANLKINVAASLEKVNlveHQ-NKKVKSLSGGMKKRLGIAQAIIHNPQVLIVDEPTAGLDPEERV 170
Cdd:TIGR00957 1382 PFSQYSDeeVWWALELAHLKTFVSALPDKLD---HEcAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDN 1458
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 488422644 171 RLRHLLSNLAKDKIVIISTHIVSDIESTCENIaILDKGVIAYKGSIKNLIE 221
Cdd:TIGR00957 1459 LIQSTIRTQFEDCTVLTIAHRLNTIMDYTRVI-VLDKGEVAEFGAPSNLLQ 1508
|
|
| ABC_FeS_Assembly |
cd03217 |
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of ... |
4-228 |
1.40e-12 |
|
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Pssm-ID: 213184 [Multi-domain] Cd Length: 200 Bit Score: 65.24 E-value: 1.40e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 4 IVIKDVNKTYDGKTyALKNINLEIKNGM-FGILGRNGSGKSTLMNmlsTILQQSS-----GTIEINNISLTQ---TKQIR 74
Cdd:cd03217 1 LEIKDLHVSVGGKE-ILKGVNLTIKKGEvHALMGPNGSGKSTLAK---TIMGHPKyevteGEILFKGEDITDlppEERAR 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 75 KMIGYLPQDFDFYPNMKVKETLHYLGilsgipkanlkinvaaslekvnlvehqnkkvKSLSGGMKKRLGIAQAIIHNPQV 154
Cdd:cd03217 77 LGIFLAFQYPPEIPGVKNADFLRYVN-------------------------------EGFSGGEKKRNEILQLLLLEPDL 125
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 488422644 155 LIVDEPTAGLDPEERVRLRHLLSNLA-KDKIVIISTH---IVSDIESTceNIAILDKGVIAYKGSiKNLIELSDNKVY 228
Cdd:cd03217 126 AILDEPDSGLDIDALRLVAEVINKLReEGKSVLIITHyqrLLDYIKPD--RVHVLYDGRIVKSGD-KELALEIEKKGY 200
|
|
| PRK15134 |
PRK15134 |
microcin C ABC transporter ATP-binding protein YejF; Provisional |
15-215 |
1.69e-12 |
|
microcin C ABC transporter ATP-binding protein YejF; Provisional
Pssm-ID: 237917 [Multi-domain] Cd Length: 529 Bit Score: 67.42 E-value: 1.69e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 15 GKTYALKNINLEIKNG-MFGILGRNGSGKSTL-MNMLSTIlqQSSGTIEINNISLTQ--TKQ---IRKMIGYLPQDfdfy 87
Cdd:PRK15134 297 DHNVVVKNISFTLRPGeTLGLVGESGSGKSTTgLALLRLI--NSQGEIWFDGQPLHNlnRRQllpVRHRIQVVFQD---- 370
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 88 PNMKVKETLHYLGILS--------GIPKANLKINVAASLEKVNL-VEHQNKKVKSLSGGMKKRLGIAQAIIHNPQVLIVD 158
Cdd:PRK15134 371 PNSSLNPRLNVLQIIEeglrvhqpTLSAAQREQQVIAVMEEVGLdPETRHRYPAEFSGGQRQRIAIARALILKPSLIILD 450
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 159 EPTAGLDPEERVRLRHLLSNLAKDK---IVIIStHIVSDIESTCENIAILDKGVIAYKGS 215
Cdd:PRK15134 451 EPTSSLDKTVQAQILALLKSLQQKHqlaYLFIS-HDLHVVRALCHQVIVLRQGEVVEQGD 509
|
|
| PRK15439 |
PRK15439 |
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional |
21-196 |
1.83e-12 |
|
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Pssm-ID: 185336 [Multi-domain] Cd Length: 510 Bit Score: 67.38 E-value: 1.83e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 21 KNINLEIKNG-MFGILGRNGSGKSTLMNMLSTILQQSSGTIEINN--ISLTQTKQ-IRKMIGYLPQD-------FD--FY 87
Cdd:PRK15439 280 RNISLEVRAGeILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGkeINALSTAQrLARGLVYLPEDrqssglyLDapLA 359
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 88 PNMkVKETLHYLGILSGiPKANlkinvAASLEK----VNL-VEHQNKKVKSLSGGMKKRLGIAQAIIHNPQVLIVDEPTA 162
Cdd:PRK15439 360 WNV-CALTHNRRGFWIK-PARE-----NAVLERyrraLNIkFNHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTR 432
|
170 180 190
....*....|....*....|....*....|....
gi 488422644 163 GLDPEERVRLRHLLSNLAKDKIVIIstHIVSDIE 196
Cdd:PRK15439 433 GVDVSARNDIYQLIRSIAAQNVAVL--FISSDLE 464
|
|
| PRK14271 |
PRK14271 |
phosphate ABC transporter ATP-binding protein; Provisional |
34-219 |
2.44e-12 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172759 [Multi-domain] Cd Length: 276 Bit Score: 65.89 E-value: 2.44e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 34 ILGRNGSGKSTLMNMLSTILQQSSGTIEINNISL--------TQTKQIRKMIGYLPQDFDFYPNMKVKETLHYLGILSGI 105
Cdd:PRK14271 52 LMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLggrsifnyRDVLEFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLV 131
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 106 PKANLKINVAASLEKVNLVEHQNKKVKS----LSGGMKKRLGIAQAIIHNPQVLIVDEPTAGLDPEERVRLRHLLSNLAK 181
Cdd:PRK14271 132 PRKEFRGVAQARLTEVGLWDAVKDRLSDspfrLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD 211
|
170 180 190
....*....|....*....|....*....|....*...
gi 488422644 182 DKIVIISTHIVSDIESTCENIAILDKGVIAYKGSIKNL 219
Cdd:PRK14271 212 RLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQL 249
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
5-189 |
2.77e-12 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 66.59 E-value: 2.77e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 5 VIKDVNKTYDGKTYALKNINLEIKNG-MFGILGRNGSGKSTLMNMLSTILQQSSGTIEINNISLTQ--TKQIRKM-IGYL 80
Cdd:COG3845 259 EVENLSVRDDRGVPALKDVSLEVRAGeILGIAGVAGNGQSELAEALAGLRPPASGSIRLDGEDITGlsPRERRRLgVAYI 338
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 81 PQD---FDFYPNMKVKETLhylgILSGIPKANLK----INVAASLEKVN-LVE-------HQNKKVKSLSGGMKKRLGIA 145
Cdd:COG3845 339 PEDrlgRGLVPDMSVAENL----ILGRYRRPPFSrggfLDRKAIRAFAEeLIEefdvrtpGPDTPARSLSGGNQQKVILA 414
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 488422644 146 QAIIHNPQVLIVDEPTAGLDPE--ERVRlRHLLSnlAKDK---IVIIST 189
Cdd:COG3845 415 RELSRDPKLLIAAQPTRGLDVGaiEFIH-QRLLE--LRDAgaaVLLISE 460
|
|
| SufC |
COG0396 |
Fe-S cluster assembly ATPase SufC [Posttranslational modification, protein turnover, ... |
6-165 |
3.33e-12 |
|
Fe-S cluster assembly ATPase SufC [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440165 [Multi-domain] Cd Length: 245 Bit Score: 64.70 E-value: 3.33e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 6 IKDVNKTYDGKTyALKNINLEIKNGMF-GILGRNGSGKSTLMNMLSTI--LQQSSGTIEINNISLTQ---TKQIRKMIGY 79
Cdd:COG0396 3 IKNLHVSVEGKE-ILKGVNLTIKPGEVhAIMGPNGSGKSTLAKVLMGHpkYEVTSGSILLDGEDILElspDERARAGIFL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 80 L---PQDFdfyPNMKVKETLHYlgILSGIPKANLKInvaasLEKVNLVEHQNKKVK------------SLSGGMKKRLGI 144
Cdd:COG0396 82 AfqyPVEI---PGVSVSNFLRT--ALNARRGEELSA-----REFLKLLKEKMKELGldedfldryvneGFSGGEKKRNEI 151
|
170 180
....*....|....*....|.
gi 488422644 145 AQAIIHNPQVLIVDEPTAGLD 165
Cdd:COG0396 152 LQMLLLEPKLAILDETDSGLD 172
|
|
| PRK10522 |
PRK10522 |
multidrug transporter membrane component/ATP-binding component; Provisional |
7-190 |
3.59e-12 |
|
multidrug transporter membrane component/ATP-binding component; Provisional
Pssm-ID: 236707 [Multi-domain] Cd Length: 547 Bit Score: 66.53 E-value: 3.59e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 7 KDVNKTYDGKTYALKNINLEIKNG--MFGIlGRNGSGKSTLMNMLSTILQQSSGTIEINNISLTQTKQ--IRKMIGYLPQ 82
Cdd:PRK10522 326 RNVTFAYQDNGFSVGPINLTIKRGelLFLI-GGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPedYRKLFSAVFT 404
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 83 DFDFYPnmkvketlHYLGILSGIPKANLkinVAASLEKVNL---VEHQNKKVK--SLSGGMKKRLGIAQAIIHNPQVLIV 157
Cdd:PRK10522 405 DFHLFD--------QLLGPEGKPANPAL---VEKWLERLKMahkLELEDGRISnlKLSKGQKKRLALLLALAEERDILLL 473
|
170 180 190
....*....|....*....|....*....|....*
gi 488422644 158 DEPTAGLDPE-ERVRLRHLLSNL-AKDKIVIISTH 190
Cdd:PRK10522 474 DEWAADQDPHfRREFYQVLLPLLqEMGKTIFAISH 508
|
|
| Rli1 |
COG1245 |
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ... |
33-206 |
4.33e-12 |
|
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ribosomal structure and biogenesis];
Pssm-ID: 440858 [Multi-domain] Cd Length: 592 Bit Score: 65.96 E-value: 4.33e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 33 GILGRNGSGKSTLMNMLS-----------------TILQQSSGTIEINNISLTQTKQIRkmIGYLPQDFDFYPNM---KV 92
Cdd:COG1245 103 GILGPNGIGKSTALKILSgelkpnlgdydeepswdEVLKRFRGTELQDYFKKLANGEIK--VAHKPQYVDLIPKVfkgTV 180
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 93 KETLHylgilsgipKANLKINVAASLEKVNLVEHQNKKVKSLSGGMKKRLGIAQAIIHNPQVLIVDEPTAGLDPEERVRL 172
Cdd:COG1245 181 RELLE---------KVDERGKLDELAEKLGLENILDRDISELSGGELQRVAIAAALLRDADFYFFDEPSSYLDIYQRLNV 251
|
170 180 190
....*....|....*....|....*....|....*
gi 488422644 173 RHLLSNLAK-DKIVIISTHivsdiestceNIAILD 206
Cdd:COG1245 252 ARLIRELAEeGKYVLVVEH----------DLAILD 276
|
|
| ABCD_peroxisomal_ALDP |
cd03223 |
ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding ... |
20-188 |
4.81e-12 |
|
ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic).
Pssm-ID: 213190 [Multi-domain] Cd Length: 166 Bit Score: 62.94 E-value: 4.81e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 20 LKNINLEIKNGM-FGILGRNGSGKSTLMNMLSTILQQSSGTIEI---NNISltqtkqirkmigYLPQDfdfyPnmkvket 95
Cdd:cd03223 17 LKDLSFEIKPGDrLLITGPSGTGKSSLFRALAGLWPWGSGRIGMpegEDLL------------FLPQR----P------- 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 96 lhYLgilsgiPKANLKINVAASLEKVnlvehqnkkvksLSGGMKKRLGIAQAIIHNPQVLIVDEPTAGLDPEErvrLRHL 175
Cdd:cd03223 74 --YL------PLGTLREQLIYPWDDV------------LSGGEQQRLAFARLLLHKPKFVFLDEATSALDEES---EDRL 130
|
170
....*....|...
gi 488422644 176 LSNLAKDKIVIIS 188
Cdd:cd03223 131 YQLLKELGITVIS 143
|
|
| PRK15079 |
PRK15079 |
oligopeptide ABC transporter ATP-binding protein OppF; Provisional |
19-182 |
5.02e-12 |
|
oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Pssm-ID: 185037 [Multi-domain] Cd Length: 331 Bit Score: 65.11 E-value: 5.02e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 19 ALKNINLEIKNG-MFGILGRNGSGKSTLMNMLSTILQQSSGTI-----EINNISLTQTKQIRKMIGYLPQD--FDFYPNM 90
Cdd:PRK15079 36 AVDGVTLRLYEGeTLGVVGESGCGKSTFARAIIGLVKATDGEVawlgkDLLGMKDDEWRAVRSDIQMIFQDplASLNPRM 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 91 KVKE-------TLHylgilSGIPKANLKINVAASLEKVNLVEHQ-NKKVKSLSGGMKKRLGIAQAIIHNPQVLIVDEPTA 162
Cdd:PRK15079 116 TIGEiiaeplrTYH-----PKLSRQEVKDRVKAMMLKVGLLPNLiNRYPHEFSGGQCQRIGIARALILEPKLIICDEPVS 190
|
170 180
....*....|....*....|
gi 488422644 163 GLDPEERVRLRHLLSNLAKD 182
Cdd:PRK15079 191 ALDVSIQAQVVNLLQQLQRE 210
|
|
| PRK10790 |
PRK10790 |
SmdB family multidrug efflux ABC transporter permease/ATP-binding protein; |
4-221 |
6.02e-12 |
|
SmdB family multidrug efflux ABC transporter permease/ATP-binding protein;
Pssm-ID: 182733 [Multi-domain] Cd Length: 592 Bit Score: 65.89 E-value: 6.02e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 4 IVIKDVNKTYDGKTYALKNINLEI-KNGMFGILGRNGSGKSTLMNMLSTILQQSSGTIEINNISLTQTKQ--IRKMIGYL 80
Cdd:PRK10790 341 IDIDNVSFAYRDDNLVLQNINLSVpSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHsvLRQGVAMV 420
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 81 PQDfdfyPNmkvketlhylgILSGIPKANLKI-------NVAASLEKVNLVEhqnkKVKSLSGGMKKRLG---------- 143
Cdd:PRK10790 421 QQD----PV-----------VLADTFLANVTLgrdiseeQVWQALETVQLAE----LARSLPDGLYTPLGeqgnnlsvgq 481
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 144 -----IAQAIIHNPQVLIVDEPTAGLDPEERVRLRHLLSNLAKDKIVIISTHIVSDIESTcENIAILDKGVIAYKGSIKN 218
Cdd:PRK10790 482 kqllaLARVLVQTPQILILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIVEA-DTILVLHRGQAVEQGTHQQ 560
|
...
gi 488422644 219 LIE 221
Cdd:PRK10790 561 LLA 563
|
|
| PRK11819 |
PRK11819 |
putative ABC transporter ATP-binding protein; Reviewed |
3-191 |
1.38e-11 |
|
putative ABC transporter ATP-binding protein; Reviewed
Pssm-ID: 236992 [Multi-domain] Cd Length: 556 Bit Score: 64.75 E-value: 1.38e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 3 NIVI--KDVNKTYDGKTYaLKNINLEI-KNGMFGILGRNGSGKSTLMNMLSTILQQSSGTIEINnisltQTKQirkmIGY 79
Cdd:PRK11819 322 DKVIeaENLSKSFGDRLL-IDDLSFSLpPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIG-----ETVK----LAY 391
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 80 LPQDFD-FYPNMKVKETlhylgiLSG----IPKANLKINVAASLEKVNLV-EHQNKKVKSLSGGMKKRLGIAQAIIHNPQ 153
Cdd:PRK11819 392 VDQSRDaLDPNKTVWEE------ISGgldiIKVGNREIPSRAYVGRFNFKgGDQQKKVGVLSGGERNRLHLAKTLKQGGN 465
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 488422644 154 VLIVDEPTAGLDPEErvrLRHL---LSNLAKDKIVI---------ISTHI 191
Cdd:PRK11819 466 VLLLDEPTNDLDVET---LRALeeaLLEFPGCAVVIshdrwfldrIATHI 512
|
|
| PRK10261 |
PRK10261 |
glutathione transporter ATP-binding protein; Provisional |
15-219 |
2.02e-11 |
|
glutathione transporter ATP-binding protein; Provisional
Pssm-ID: 182342 [Multi-domain] Cd Length: 623 Bit Score: 64.11 E-value: 2.02e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 15 GKTYALKNINLEIKNG-MFGILGRNGSGKSTLMNMLSTILQQSSGT---------------IEINNISLTQTKQIR---- 74
Cdd:PRK10261 27 QKIAAVRNLSFSLQRGeTLAIVGESGSGKSVTALALMRLLEQAGGLvqcdkmllrrrsrqvIELSEQSAAQMRHVRgadm 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 75 KMIGYLPQDfDFYPNMKVKETL-HYLGILSGIPKANLKINVAASLEKVNLVEHQ---NKKVKSLSGGMKKRLGIAQAIIH 150
Cdd:PRK10261 107 AMIFQEPMT-SLNPVFTVGEQIaESIRLHQGASREEAMVEAKRMLDQVRIPEAQtilSRYPHQLSGGMRQRVMIAMALSC 185
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 488422644 151 NPQVLIVDEPTAGLDPEERVRLRHLLSNLAKDKI--VIISTH---IVSDIestCENIAILDKGVIAYKGSIKNL 219
Cdd:PRK10261 186 RPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSmgVIFITHdmgVVAEI---ADRVLVMYQGEAVETGSVEQI 256
|
|
| Rli1 |
COG1245 |
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ... |
26-195 |
2.06e-11 |
|
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ribosomal structure and biogenesis];
Pssm-ID: 440858 [Multi-domain] Cd Length: 592 Bit Score: 64.04 E-value: 2.06e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 26 EIKNG-MFGILGRNGSGKSTLMNMLSTILQQSSGTIEinnisltqtKQIRkmIGYLPQ----DFDfypnMKVKETLhylg 100
Cdd:COG1245 362 EIREGeVLGIVGPNGIGKTTFAKILAGVLKPDEGEVD---------EDLK--ISYKPQyispDYD----GTVEEFL---- 422
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 101 ilsgipKANLKINVAASLEKVNLVEHQN------KKVKSLSGGMKKRLGIAQAIIHNPQVLIVDEPTAGLDPEERVRLRH 174
Cdd:COG1245 423 ------RSANTDDFGSSYYKTEIIKPLGleklldKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAK 496
|
170 180
....*....|....*....|...
gi 488422644 175 LLSNLA--KDKIVIISTHivsDI 195
Cdd:COG1245 497 AIRRFAenRGKTAMVVDH---DI 516
|
|
| PRK09700 |
PRK09700 |
D-allose ABC transporter ATP-binding protein AlsA; |
21-211 |
2.91e-11 |
|
D-allose ABC transporter ATP-binding protein AlsA;
Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 63.65 E-value: 2.91e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 21 KNINLEIKNG-MFGILGRNGSGKSTLMNMLSTILQQSSGTIEINNISLTQTKQ---IRKMIGYLPQ---DFDFYPNMKVK 93
Cdd:PRK09700 280 RDISFSVCRGeILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPldaVKKGMAYITEsrrDNGFFPNFSIA 359
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 94 ETLhylGILSGIPKANLK--INVAASLEKVNLVEHQ-----------NKKVKSLSGGMKKRLGIAQAIIHNPQVLIVDEP 160
Cdd:PRK09700 360 QNM---AISRSLKDGGYKgaMGLFHEVDEQRTAENQrellalkchsvNQNITELSGGNQQKVLISKWLCCCPEVIIFDEP 436
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 488422644 161 TAGLDPEERVRLRHLLSNLAKD-KIVIISTHIVSDIESTCENIAILDKGVIA 211
Cdd:PRK09700 437 TRGIDVGAKAEIYKVMRQLADDgKVILMVSSELPEIITVCDRIAVFCEGRLT 488
|
|
| tagH |
PRK13545 |
teichoic acids export protein ATP-binding subunit; Provisional |
18-221 |
3.02e-11 |
|
teichoic acids export protein ATP-binding subunit; Provisional
Pssm-ID: 184130 [Multi-domain] Cd Length: 549 Bit Score: 63.76 E-value: 3.02e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 18 YALKNINLEIKNG-MFGILGRNGSGKSTLMNMLSTILQQSSGTIEINNisltqTKQIRKMIGYLPQDFDFYPNMKVKetl 96
Cdd:PRK13545 38 YALNNISFEVPEGeIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKG-----SAALIAISSGLNGQLTGIENIELK--- 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 97 hylGILSGIPKANLKINVAASLEKVNLVEHQNKKVKSLSGGMKKRLGIAQAIIHNPQVLIVDEP-TAGLDPEERVRLRHL 175
Cdd:PRK13545 110 ---GLMMGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEAlSVGDQTFTKKCLDKM 186
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 488422644 176 LSNLAKDKIVIISTHIVSDIESTCENIAILDKGVIAYKGSIKNLIE 221
Cdd:PRK13545 187 NEFKEQGKTIFFISHSLSQVKSFCTKALWLHYGQVKEYGDIKEVVD 232
|
|
| 3a01205 |
TIGR00956 |
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other] |
5-217 |
3.66e-11 |
|
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273362 [Multi-domain] Cd Length: 1394 Bit Score: 63.59 E-value: 3.66e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 5 VIKDVNKTYDGKTYA-LKNINLEIKNG-MFGILGRNGSGKSTLMNMLSTILQQS----SGTIEINNISLTQ-TKQIRKMI 77
Cdd:TIGR00956 61 GFRKLKKFRDTKTFDiLKPMDGLIKPGeLTVVLGRPGSGCSTLLKTIASNTDGFhigvEGVITYDGITPEEiKKHYRGDV 140
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 78 GYLPQDFDFYPNMKVKETLHYLGILSGIpkaNLKINVAASLEKVNLVEH-----------QNKKV-----KSLSGGMKKR 141
Cdd:TIGR00956 141 VYNAETDVHFPHLTVGETLDFAARCKTP---QNRPDGVSREEYAKHIADvymatyglshtRNTKVgndfvRGVSGGERKR 217
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 488422644 142 LGIAQAIIHNPQVLIVDEPTAGLDPE---ERVRLRHLLSNLAKDKIVIISTHIVSDIESTCENIAILDKGVIAYKGSIK 217
Cdd:TIGR00956 218 VSIAEASLGGAKIQCWDNATRGLDSAtalEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPAD 296
|
|
| YejF |
COG4172 |
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ... |
11-210 |
4.33e-11 |
|
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443332 [Multi-domain] Cd Length: 533 Bit Score: 63.16 E-value: 4.33e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 11 KTYDGKTYALKNINLEIKNG-MFGILGRNGSGKS----TLMNMLSTILQQSSGTI-----EINNISLTQTKQIR-KMIGY 79
Cdd:COG4172 17 GQGGGTVEAVKGVSFDIAAGeTLALVGESGSGKSvtalSILRLLPDPAAHPSGSIlfdgqDLLGLSERELRRIRgNRIAM 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 80 LPQDfdfyPnM-----------KVKETL--HYlgilsGIPKANLKINVAASLEKVNLVE---------HQnkkvksLSGG 137
Cdd:COG4172 97 IFQE----P-MtslnplhtigkQIAEVLrlHR-----GLSGAAARARALELLERVGIPDperrldaypHQ------LSGG 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 138 MKKRLGIAQAIIHNPQVLIVDEPTAGLDpeerVRLRH----LLSNLAKDK---IVIIsTH---IVSDIestCENIAILDK 207
Cdd:COG4172 161 QRQRVMIAMALANEPDLLIADEPTTALD----VTVQAqildLLKDLQRELgmaLLLI-THdlgVVRRF---ADRVAVMRQ 232
|
...
gi 488422644 208 GVI 210
Cdd:COG4172 233 GEI 235
|
|
| PRK13409 |
PRK13409 |
ribosome biogenesis/translation initiation ATPase RLI; |
8-195 |
8.44e-11 |
|
ribosome biogenesis/translation initiation ATPase RLI;
Pssm-ID: 184037 [Multi-domain] Cd Length: 590 Bit Score: 62.13 E-value: 8.44e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 8 DVNKTYDGktYALKNINLEIKNG-MFGILGRNGSGKSTLMNMLSTILQQSSGTIEINnisltqtkqIRkmIGYLPQ---- 82
Cdd:PRK13409 345 DLTKKLGD--FSLEVEGGEIYEGeVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE---------LK--ISYKPQyikp 411
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 83 DFDfypnMKVKEtlhylgILSGIPKanlkiNVAASLEKVNLVEHQN------KKVKSLSGGMKKRLGIAQAIIHNPQVLI 156
Cdd:PRK13409 412 DYD----GTVED------LLRSITD-----DLGSSYYKSEIIKPLQlerlldKNVKDLSGGELQRVAIAACLSRDADLYL 476
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 488422644 157 VDEPTAGLDPEERVR----LRHLLSNlaKDKIVIISTHivsDI 195
Cdd:PRK13409 477 LDEPSAHLDVEQRLAvakaIRRIAEE--REATALVVDH---DI 514
|
|
| PRK10247 |
PRK10247 |
putative ABC transporter ATP-binding protein YbbL; Provisional |
15-190 |
8.88e-11 |
|
putative ABC transporter ATP-binding protein YbbL; Provisional
Pssm-ID: 182331 [Multi-domain] Cd Length: 225 Bit Score: 60.50 E-value: 8.88e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 15 GKTYALKNINLEIKNGMFG-ILGRNGSGKSTLMNMLSTILQQSSGTI--EINNISLTQTKQIRKMIGYLPQDFDFYPNmK 91
Cdd:PRK10247 18 GDAKILNNISFSLRAGEFKlITGPSGCGKSTLLKIVASLISPTSGTLlfEGEDISTLKPEIYRQQVSYCAQTPTLFGD-T 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 92 VKETLHYLGILSGI---PKAnlkinVAASLEKVNLVEHQ-NKKVKSLSGGMKKRLGIAQAIIHNPQVLIVDEPTAGLDPE 167
Cdd:PRK10247 97 VYDNLIFPWQIRNQqpdPAI-----FLDDLERFALPDTIlTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDES 171
|
170 180
....*....|....*....|....*
gi 488422644 168 ERVRLRHLLSNLAKDK--IVIISTH 190
Cdd:PRK10247 172 NKHNVNEIIHRYVREQniAVLWVTH 196
|
|
| PRK10762 |
PRK10762 |
D-ribose transporter ATP binding protein; Provisional |
6-208 |
1.04e-10 |
|
D-ribose transporter ATP binding protein; Provisional
Pssm-ID: 236755 [Multi-domain] Cd Length: 501 Bit Score: 61.94 E-value: 1.04e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 6 IKDVNKTYDGkTYALKNINLEIKNG-MFGILGRNGSGKSTLMNMLSTILQQSSGTIEI--NNISLTQTKQIRKM-IGYLP 81
Cdd:PRK10762 7 LKGIDKAFPG-VKALSGAALNVYPGrVMALVGENGAGKSTMMKVLTGIYTRDAGSILYlgKEVTFNGPKSSQEAgIGIIH 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 82 QDFDFYPNMKVKETLhYLG-----ILSGIPKANLKINVAASLEKVNLVEHQNKKVKSLSGGMKKRLGIAQAIIHNPQVLI 156
Cdd:PRK10762 86 QELNLIPQLTIAENI-FLGrefvnRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFESKVII 164
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 488422644 157 VDEPTAGLDPEERVRLRHLLSNLAKDK--IVIIStHIVSDIESTCENIAILDKG 208
Cdd:PRK10762 165 MDEPTDALTDTETESLFRVIRELKSQGrgIVYIS-HRLKEIFEICDDVTVFRDG 217
|
|
| PRK13541 |
PRK13541 |
cytochrome c biogenesis protein CcmA; Provisional |
34-197 |
1.23e-10 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 184128 [Multi-domain] Cd Length: 195 Bit Score: 59.50 E-value: 1.23e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 34 ILGRNGSGKSTLMNMLSTILQQSSGTIEINNIsltQTKQIRK-MIGYLPQDFDFYPNMKVKETLHYLGILSgipkaNLKI 112
Cdd:PRK13541 31 IKGANGCGKSSLLRMIAGIMQPSSGNIYYKNC---NINNIAKpYCTYIGHNLGLKLEMTVFENLKFWSEIY-----NSAE 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 113 NVAASLEKVNLVEHQNKKVKSLSGGMKKRLGIAQAIIHNPQVLIVDEPTAGLDPEERVRLRHLLSNLAKD-KIVIISTHI 191
Cdd:PRK13541 103 TLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKANSgGIVLLSSHL 182
|
....*.
gi 488422644 192 VSDIES 197
Cdd:PRK13541 183 ESSIKS 188
|
|
| PLN03140 |
PLN03140 |
ABC transporter G family member; Provisional |
34-165 |
1.69e-10 |
|
ABC transporter G family member; Provisional
Pssm-ID: 215599 [Multi-domain] Cd Length: 1470 Bit Score: 61.79 E-value: 1.69e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 34 ILGRNGSGKSTLMNMLSTilQQSSGTIEIN-NISLTQTKQ--IRKMIGYLPQDFDFYPNMKVKETLHYLGILSgIPKANL 110
Cdd:PLN03140 911 LMGVSGAGKTTLMDVLAG--RKTGGYIEGDiRISGFPKKQetFARISGYCEQNDIHSPQVTVRESLIYSAFLR-LPKEVS 987
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 488422644 111 KINVAASLEKV-NLVEHQNKK--------VKSLSGGMKKRLGIAQAIIHNPQVLIVDEPTAGLD 165
Cdd:PLN03140 988 KEEKMMFVDEVmELVELDNLKdaivglpgVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1051
|
|
| PRK10938 |
PRK10938 |
putative molybdenum transport ATP-binding protein ModF; Provisional |
24-206 |
5.79e-10 |
|
putative molybdenum transport ATP-binding protein ModF; Provisional
Pssm-ID: 182852 [Multi-domain] Cd Length: 490 Bit Score: 59.64 E-value: 5.79e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 24 NLEIKNGMF-GILGRNGSGKSTLMNMLSTILQQSSGTIE-----INNISLTQTKQI---------RKMIGYLPQDFdfyp 88
Cdd:PRK10938 23 SLTLNAGDSwAFVGANGSGKSALARALAGELPLLSGERQsqfshITRLSFEQLQKLvsdewqrnnTDMLSPGEDDT---- 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 89 NMKVKETlhylgILSGIPKANLKINVAASLEKVNLVehqNKKVKSLSGGMKKRLGIAQAIIHNPQVLIVDEPTAGLDPEE 168
Cdd:PRK10938 99 GRTTAEI-----IQDEVKDPARCEQLAQQFGITALL---DRRFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVAS 170
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 488422644 169 RVRLRHLLSNLAKDKI--VIISTHIvSDIESTCENIAILD 206
Cdd:PRK10938 171 RQQLAELLASLHQSGItlVLVLNRF-DEIPDFVQFAGVLA 209
|
|
| PLN03130 |
PLN03130 |
ABC transporter C family member; Provisional |
4-257 |
1.20e-09 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215595 [Multi-domain] Cd Length: 1622 Bit Score: 58.98 E-value: 1.20e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 4 IVIKDVNKTYDGKT--YALKNINLEIKNGMF-GILGRNGSGKSTLMN-MLSTILQQSSGTIeinnisltqtkQIRKMIGY 79
Cdd:PLN03130 615 ISIKNGYFSWDSKAerPTLSNINLDVPVGSLvAIVGSTGEGKTSLISaMLGELPPRSDASV-----------VIRGTVAY 683
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 80 LPQdFDFYPNMKVKETlhylgILSGIP----KANLKINVAA------SLEKVNLVEHQNKKVkSLSGGMKKRLGIAQAII 149
Cdd:PLN03130 684 VPQ-VSWIFNATVRDN-----ILFGSPfdpeRYERAIDVTAlqhdldLLPGGDLTEIGERGV-NISGGQKQRVSMARAVY 756
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 150 HNPQVLIVDEPTAGLDP-------------EERVRLR-------HLLSNLakDKIVIISTHIVSDiESTCENIA---ILD 206
Cdd:PLN03130 757 SNSDVYIFDDPLSALDAhvgrqvfdkcikdELRGKTRvlvtnqlHFLSQV--DRIILVHEGMIKE-EGTYEELSnngPLF 833
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*
gi 488422644 207 KGVIAYKGSIKNLIELSDNKVYEITISPSK----LNQLKKNNIFITKIQEYEHLL 257
Cdd:PLN03130 834 QKLMENAGKMEEYVEENGEEEDDQTSSKPVangnANNLKKDSSSKKKSKEGKSVL 888
|
|
| GguA |
NF040905 |
sugar ABC transporter ATP-binding protein; |
7-208 |
1.26e-09 |
|
sugar ABC transporter ATP-binding protein;
Pssm-ID: 468840 [Multi-domain] Cd Length: 500 Bit Score: 58.65 E-value: 1.26e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 7 KDVNKTYDGKTyALKNINLEIKNG-MFGILGRNGSGKSTLMNMLSTILQQSS--GTIEINNiSLTQTKQIR----KMIGY 79
Cdd:NF040905 5 RGITKTFPGVK-ALDDVNLSVREGeIHALCGENGAGKSTLMKVLSGVYPHGSyeGEILFDG-EVCRFKDIRdseaLGIVI 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 80 LPQDFDFYPNMKVKETLhYLG---ILSGIPKANLKINVAASL-EKVNLVEHQNKKVKSLSGGMKKRLGIAQAIIHNPQVL 155
Cdd:NF040905 83 IHQELALIPYLSIAENI-FLGnerAKRGVIDWNETNRRARELlAKVGLDESPDTLVTDIGVGKQQLVEIAKALSKDVKLL 161
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 488422644 156 IVDEPTAGLDPEERVRLRHLLSNLAKDKI--VIIStHIVSDIESTCENIAILDKG 208
Cdd:NF040905 162 ILDEPTAALNEEDSAALLDLLLELKAQGItsIIIS-HKLNEIRRVADSITVLRDG 215
|
|
| PRK11819 |
PRK11819 |
putative ABC transporter ATP-binding protein; Reviewed |
5-167 |
1.41e-09 |
|
putative ABC transporter ATP-binding protein; Reviewed
Pssm-ID: 236992 [Multi-domain] Cd Length: 556 Bit Score: 58.59 E-value: 1.41e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 5 VIKDVNKTYDGKTYALKNINLEIKNGM-FGILGRNGSGKSTLMNMLSTILQQSSGtieinnisltqtkQIRKM----IGY 79
Cdd:PRK11819 8 TMNRVSKVVPPKKQILKDISLSFFPGAkIGVLGLNGAGKSTLLRIMAGVDKEFEG-------------EARPApgikVGY 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 80 LPQDFDFYPNMKVKETlhylgILSGIP--KANLK----INVA---------------ASLEkvNLVEHQN---------- 128
Cdd:PRK11819 75 LPQEPQLDPEKTVREN-----VEEGVAevKAALDrfneIYAAyaepdadfdalaaeqGELQ--EIIDAADawdldsqlei 147
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 488422644 129 -----------KKVKSLSGGMKKRLGIAQAIIHNPQVLIVDEPTAGLDPE 167
Cdd:PRK11819 148 amdalrcppwdAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAE 197
|
|
| PTZ00265 |
PTZ00265 |
multidrug resistance protein (mdr1); Provisional |
1-195 |
1.66e-09 |
|
multidrug resistance protein (mdr1); Provisional
Pssm-ID: 240339 [Multi-domain] Cd Length: 1466 Bit Score: 58.50 E-value: 1.66e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 1 MNNIVIKDVNKTYDGK--TYALKNINLEIKNG-MFGILGRNGSGKSTLMNMLSTILQQSSGTIEIN---NISLTQTKQIR 74
Cdd:PTZ00265 380 IKKIQFKNVRFHYDTRkdVEIYKDLNFTLTEGkTYAFVGESGCGKSTILKLIERLYDPTEGDIIINdshNLKDINLKWWR 459
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 75 KMIGYLPQDFDFYPNM---KVKETLHYLGILSGIPKA--------------------------NLKINVAASLEKVNLVE 125
Cdd:PTZ00265 460 SKIGVVSQDPLLFSNSiknNIKYSLYSLKDLEALSNYynedgndsqenknkrnscrakcagdlNDMSNTTDSNELIEMRK 539
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 126 HQN-----------KKV---------------------KSLSGGMKKRLGIAQAIIHNPQVLIVDEPTAGLDPEERVRLR 173
Cdd:PTZ00265 540 NYQtikdsevvdvsKKVlihdfvsalpdkyetlvgsnaSKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQ 619
|
250 260
....*....|....*....|....
gi 488422644 174 HLLSNLA--KDKIVIISTHIVSDI 195
Cdd:PTZ00265 620 KTINNLKgnENRITIIIAHRLSTI 643
|
|
| PRK11147 |
PRK11147 |
ABC transporter ATPase component; Reviewed |
34-210 |
1.73e-09 |
|
ABC transporter ATPase component; Reviewed
Pssm-ID: 236861 [Multi-domain] Cd Length: 635 Bit Score: 58.42 E-value: 1.73e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 34 ILGRNGSGKSTLMNMLS------------------TILQQ--------------SSGTIEINNIsLTQTKQIRKMIGYLP 81
Cdd:PRK11147 34 LVGRNGAGKSTLMKILNgevllddgriiyeqdlivARLQQdpprnvegtvydfvAEGIEEQAEY-LKRYHDISHLVETDP 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 82 QDFDFYPNMKVKETLHYLGILSgipkanLKINVAASLEKVNLveHQNKKVKSLSGGMKKRLGIAQAIIHNPQVLIVDEPT 161
Cdd:PRK11147 113 SEKNLNELAKLQEQLDHHNLWQ------LENRINEVLAQLGL--DPDAALSSLSGGWLRKAALGRALVSNPDVLLLDEPT 184
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 488422644 162 AGLDPEERVRLRHLLSNLaKDKIVIIStHIVSDIESTCENIAILDKGVI 210
Cdd:PRK11147 185 NHLDIETIEWLEGFLKTF-QGSIIFIS-HDRSFIRNMATRIVDLDRGKL 231
|
|
| dppD |
PRK11022 |
dipeptide transporter ATP-binding subunit; Provisional |
19-214 |
2.26e-09 |
|
dipeptide transporter ATP-binding subunit; Provisional
Pssm-ID: 182906 [Multi-domain] Cd Length: 326 Bit Score: 57.44 E-value: 2.26e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 19 ALKNINLEIKNG-MFGILGRNGSGKS----TLMNMLSTILQQSSGTIEINNISLTQ--TKQIRKMIG----YLPQD---- 83
Cdd:PRK11022 22 AVDRISYSVKQGeVVGIVGESGSGKSvsslAIMGLIDYPGRVMAEKLEFNGQDLQRisEKERRNLVGaevaMIFQDpmts 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 84 --------FDFYPNMKV-----KETLHYLGI----LSGIPKANLKINVaaslekvnlVEHQnkkvksLSGGMKKRLGIAQ 146
Cdd:PRK11022 102 lnpcytvgFQIMEAIKVhqggnKKTRRQRAIdllnQVGIPDPASRLDV---------YPHQ------LSGGMSQRVMIAM 166
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 147 AIIHNPQVLIVDEPTAGLDPEERVRLRHLLSNLAKDK--IVIISTHIVSDIESTCENIAILDKGVIAYKG 214
Cdd:PRK11022 167 AIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKEnmALVLITHDLALVAEAAHKIIVMYAGQVVETG 236
|
|
| PvdE |
COG4615 |
ABC-type siderophore export system, fused ATPase and permease components [Inorganic ion ... |
4-190 |
4.21e-09 |
|
ABC-type siderophore export system, fused ATPase and permease components [Inorganic ion transport and metabolism];
Pssm-ID: 443659 [Multi-domain] Cd Length: 547 Bit Score: 57.12 E-value: 4.21e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 4 IVIKDVNKTY----DGKTYALKNINLEIKNG--MFgILGRNGSGKSTLMNMLSTILQQSSGTIEINNISLTQTKQIRkmi 77
Cdd:COG4615 328 LELRGVTYRYpgedGDEGFTLGPIDLTIRRGelVF-IVGGNGSGKSTLAKLLTGLYRPESGEILLDGQPVTADNREA--- 403
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 78 gYLpQDF-----DFYpnmkvketL--HYLGILSGIPKAnlkiNVAASLEKVNLvEHqnkKVK---------SLSGGMKKR 141
Cdd:COG4615 404 -YR-QLFsavfsDFH--------LfdRLLGLDGEADPA----RARELLERLEL-DH---KVSvedgrfsttDLSQGQRKR 465
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 488422644 142 LGIAQAIIHNPQVLIVDEPTAGLDPEERvRL--RHLLSNL-AKDKIVIISTH 190
Cdd:COG4615 466 LALLVALLEDRPILVFDEWAADQDPEFR-RVfyTELLPELkARGKTVIAISH 516
|
|
| nikD |
PRK10418 |
nickel transporter ATP-binding protein NikD; Provisional |
21-219 |
1.23e-08 |
|
nickel transporter ATP-binding protein NikD; Provisional
Pssm-ID: 236688 [Multi-domain] Cd Length: 254 Bit Score: 54.71 E-value: 1.23e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 21 KNINLEIKNG-MFGILGRNGSGKS----TLMNMLSTILQQSSGTIEINNISLTQTKQIRKMIGYLPQD----FDFYPNMK 91
Cdd:PRK10418 20 HGVSLTLQRGrVLALVGGSGSGKSltcaAALGILPAGVRQTAGRVLLDGKPVAPCALRGRKIATIMQNprsaFNPLHTMH 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 92 --VKETLHYLGILSgiPKANLkinvAASLEKVNLVEhqNKKVKSL-----SGGMKKRLGIAQAIIHNPQVLIVDEPTAGL 164
Cdd:PRK10418 100 thARETCLALGKPA--DDATL----TAALEAVGLEN--AARVLKLypfemSGGMLQRMMIALALLCEAPFIIADEPTTDL 171
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 488422644 165 DPEERVRLRHLLSNLAKDKI--VIISTHIVSDIESTCENIAILDKGVIAYKGSIKNL 219
Cdd:PRK10418 172 DVVAQARILDLLESIVQKRAlgMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETL 228
|
|
| ycf16 |
CHL00131 |
sulfate ABC transporter protein; Validated |
20-229 |
2.02e-08 |
|
sulfate ABC transporter protein; Validated
Pssm-ID: 214372 [Multi-domain] Cd Length: 252 Bit Score: 53.88 E-value: 2.02e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 20 LKNINLEIKNG-MFGILGRNGSGKSTLMNMLS-----TILqqsSGTIEINNISLTQ-TKQIRKMIG-YLP---------- 81
Cdd:CHL00131 23 LKGLNLSINKGeIHAIMGPNGSGKSTLSKVIAghpayKIL---EGDILFKGESILDlEPEERAHLGiFLAfqypieipgv 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 82 QDFDF----------YPNMKVKETLHYLGILSgiPKANLkINVAASLEKVNLVEhqnkkvkSLSGGMKKRLGIAQAIIHN 151
Cdd:CHL00131 100 SNADFlrlaynskrkFQGLPELDPLEFLEIIN--EKLKL-VGMDPSFLSRNVNE-------GFSGGEKKRNEILQMALLD 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 152 PQVLIVDEPTAGLDPEERVRLRHLLSNLA-KDKIVIISTH-------IVSDIestcenIAILDKGVIAYKGSIKNLIELs 223
Cdd:CHL00131 170 SELAILDETDSGLDIDALKIIAEGINKLMtSENSIILITHyqrlldyIKPDY------VHVMQNGKIIKTGDAELAKEL- 242
|
....*.
gi 488422644 224 DNKVYE 229
Cdd:CHL00131 243 EKKGYD 248
|
|
| hmuV |
PRK13547 |
heme ABC transporter ATP-binding protein; |
20-220 |
2.35e-08 |
|
heme ABC transporter ATP-binding protein;
Pssm-ID: 184132 [Multi-domain] Cd Length: 272 Bit Score: 54.06 E-value: 2.35e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 20 LKNINLEIKNG-MFGILGRNGSGKSTLMNMLSTILQQS--------SGTIEINNISLTQ--TKQIRKMIGYLPQD----F 84
Cdd:PRK13547 17 LRDLSLRIEPGrVTALLGRNGAGKSTLLKALAGDLTGGgaprgarvTGDVTLNGEPLAAidAPRLARLRAVLPQAaqpaF 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 85 DF----------YPNMKVK-ETLHYLGilsGIPKANLKINVAASLEKvnlvehqnKKVKSLSGGMKKRLGIAQAI----- 148
Cdd:PRK13547 97 AFsareivllgrYPHARRAgALTHRDG---EIAWQALALAGATALVG--------RDVTTLSGGELARVQFARVLaqlwp 165
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 488422644 149 ----IHNPQVLIVDEPTAGLDPEERVRLRHLLSNLAKDKIVIISThIVSDIE---STCENIAILDKGVIAYKGSIKNLI 220
Cdd:PRK13547 166 phdaAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLA-IVHDPNlaaRHADRIAMLADGAIVAHGAPADVL 243
|
|
| ABC_RNaseL_inhibitor_domain1 |
cd03236 |
The ATP-binding cassette domain 1 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI) ... |
33-206 |
3.22e-08 |
|
The ATP-binding cassette domain 1 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213203 [Multi-domain] Cd Length: 255 Bit Score: 53.52 E-value: 3.22e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 33 GILGRNGSGKSTLMNMLS-----------------TILQQSSGTiEINN----ISLTQTKQIRKmigylPQDFDFYPNM- 90
Cdd:cd03236 30 GLVGPNGIGKSTALKILAgklkpnlgkfddppdwdEILDEFRGS-ELQNyftkLLEGDVKVIVK-----PQYVDLIPKAv 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 91 --KVKEtlhylgILSGIPKANLKINVAASLEKVNLVEhqnKKVKSLSGGMKKRLGIAQAIIHNPQVLIVDEPTAGLDPEE 168
Cdd:cd03236 104 kgKVGE------LLKKKDERGKLDELVDQLELRHVLD---RNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQ 174
|
170 180 190
....*....|....*....|....*....|....*....
gi 488422644 169 RVRLRHLLSNLAKD-KIVIISTHivsdiestceNIAILD 206
Cdd:cd03236 175 RLNAARLIRELAEDdNYVLVVEH----------DLAVLD 203
|
|
| PRK13546 |
PRK13546 |
teichoic acids export ABC transporter ATP-binding subunit TagH; |
4-220 |
6.19e-08 |
|
teichoic acids export ABC transporter ATP-binding subunit TagH;
Pssm-ID: 184131 [Multi-domain] Cd Length: 264 Bit Score: 52.51 E-value: 6.19e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 4 IVIKDVNKTYdgktYALKNINLEIKNG-MFGILGRNGSGKSTLMNMLSTILQQSSGTIEINNisltqtkqirkMIGYLPQ 82
Cdd:PRK13546 28 LIPKHKNKTF----FALDDISLKAYEGdVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNG-----------EVSVIAI 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 83 DFDFYPNMKVKETLHYLGILSGIPKANLKINVAASLEKVNLVEHQNKKVKSLSGGMKKRLGIAQAIIHNPQVLIVDEP-T 161
Cdd:PRK13546 93 SAGLSGQLTGIENIEFKMLCMGFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEAlS 172
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 488422644 162 AGLDPEERVRLRHLLSNLAKDKIVIISTHIVSDIESTCENIAILDKGVIAYKGSIKNLI 220
Cdd:PRK13546 173 VGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLGQVRQFCTKIAWIEGGKLKDYGELDDVL 231
|
|
| PRK10762 |
PRK10762 |
D-ribose transporter ATP binding protein; Provisional |
20-165 |
7.41e-08 |
|
D-ribose transporter ATP binding protein; Provisional
Pssm-ID: 236755 [Multi-domain] Cd Length: 501 Bit Score: 53.08 E-value: 7.41e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 20 LKNINLEIKNG-MFGILGRNGSGKSTLMNMLSTILQQSSGTIEINNISL-TQTKQ--IRKMIGYLPQDFD---FYPNMKV 92
Cdd:PRK10762 268 VNDVSFTLRKGeILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVvTRSPQdgLANGIVYISEDRKrdgLVLGMSV 347
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 93 KE--TLHYLGILSgipKANLKINVAASLEKV-NLVEHQNKKVKS-------LSGGMKKRLGIAQAIIHNPQVLIVDEPTA 162
Cdd:PRK10762 348 KEnmSLTALRYFS---RAGGSLKHADEQQAVsDFIRLFNIKTPSmeqaiglLSGGNQQKVAIARGLMTRPKVLILDEPTR 424
|
...
gi 488422644 163 GLD 165
Cdd:PRK10762 425 GVD 427
|
|
| PRK10982 |
PRK10982 |
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional |
6-208 |
1.00e-07 |
|
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Pssm-ID: 182880 [Multi-domain] Cd Length: 491 Bit Score: 52.81 E-value: 1.00e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 6 IKDVNKTYDGkTYALKNINLEIKNG-MFGILGRNGSGKSTLMNMLSTILQQSSGTIEINN--ISLTQTKQ-IRKMIGYLP 81
Cdd:PRK10982 1 MSNISKSFPG-VKALDNVNLKVRPHsIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGkeIDFKSSKEaLENGISMVH 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 82 QDFDFYPNMKVKETLhYLG--ILSG--IPKANLKINVAASLEKVNLVEHQNKKVKSLSGGMKKRLGIAQAIIHNPQVLIV 157
Cdd:PRK10982 80 QELNLVLQRSVMDNM-WLGryPTKGmfVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIM 158
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 488422644 158 DEPTAGLDPEErvrLRHLLSNLAKDK-----IVIIStHIVSDIESTCENIAILDKG 208
Cdd:PRK10982 159 DEPTSSLTEKE---VNHLFTIIRKLKergcgIVYIS-HKMEEIFQLCDEITILRDG 210
|
|
| PRK13549 |
PRK13549 |
xylose transporter ATP-binding subunit; Provisional |
22-187 |
1.11e-07 |
|
xylose transporter ATP-binding subunit; Provisional
Pssm-ID: 184134 [Multi-domain] Cd Length: 506 Bit Score: 52.62 E-value: 1.11e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 22 NINLEIKNG-MFGILGRNGSGKSTLMNMLSTILQ-QSSGTIEINNISL---TQTKQIRKMIGYLPQD---FDFYPNMKVK 93
Cdd:PRK13549 280 DVSFSLRRGeILGIAGLVGAGRTELVQCLFGAYPgRWEGEIFIDGKPVkirNPQQAIAQGIAMVPEDrkrDGIVPVMGVG 359
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 94 E--TLHYLGILSGIpkanLKINVAASLEKVNlVEHQNKKVK---------SLSGGMKKRLGIAQAIIHNPQVLIVDEPTA 162
Cdd:PRK13549 360 KniTLAALDRFTGG----SRIDDAAELKTIL-ESIQRLKVKtaspelaiaRLSGGNQQKAVLAKCLLLNPKILILDEPTR 434
|
170 180
....*....|....*....|....*
gi 488422644 163 GLDPEERVRLRHLLSNLAKDKIVII 187
Cdd:PRK13549 435 GIDVGAKYEIYKLINQLVQQGVAII 459
|
|
| xylG |
TIGR02633 |
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ... |
22-187 |
1.19e-07 |
|
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131681 [Multi-domain] Cd Length: 500 Bit Score: 52.52 E-value: 1.19e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 22 NINLEIKNG-MFGILGRNGSGKSTLMNMLSTILQ-QSSGTIEINNISL---TQTKQIRKMIGYLPQD---FDFYPNMKVK 93
Cdd:TIGR02633 278 DVSFSLRRGeILGVAGLVGAGRTELVQALFGAYPgKFEGNVFINGKPVdirNPAQAIRAGIAMVPEDrkrHGIVPILGVG 357
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 94 E--TLHYLGILSGIpkanLKINVAASLEKVnLVEHQNKKVK---------SLSGGMKKRLGIAQAIIHNPQVLIVDEPTA 162
Cdd:TIGR02633 358 KniTLSVLKSFCFK----MRIDAAAELQII-GSAIQRLKVKtaspflpigRLSGGNQQKAVLAKMLLTNPRVLILDEPTR 432
|
170 180
....*....|....*....|....*
gi 488422644 163 GLDPEERVRLRHLLSNLAKDKIVII 187
Cdd:TIGR02633 433 GVDVGAKYEIYKLINQLAQEGVAII 457
|
|
| PRK10938 |
PRK10938 |
putative molybdenum transport ATP-binding protein ModF; Provisional |
2-169 |
1.62e-07 |
|
putative molybdenum transport ATP-binding protein ModF; Provisional
Pssm-ID: 182852 [Multi-domain] Cd Length: 490 Bit Score: 51.94 E-value: 1.62e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 2 NNIVIKDVNKTYDGKTyALKNINLEIKNGM-FGILGRNGSGKSTLMNMLS-----------TIL--QQSSG-TIEinnis 66
Cdd:PRK10938 259 PRIVLNNGVVSYNDRP-ILHNLSWQVNPGEhWQIVGPNGAGKSTLLSLITgdhpqgysndlTLFgrRRGSGeTIW----- 332
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 67 ltqtkQIRKMIGYLPQDF--DFYPNMKVKETlhylgILSG------IPKA---NLKINVAASLEKVNLVEHQ-NKKVKSL 134
Cdd:PRK10938 333 -----DIKKHIGYVSSSLhlDYRVSTSVRNV-----ILSGffdsigIYQAvsdRQQKLAQQWLDILGIDKRTaDAPFHSL 402
|
170 180 190
....*....|....*....|....*....|....*
gi 488422644 135 SGGMKKRLGIAQAIIHNPQVLIVDEPTAGLDPEER 169
Cdd:PRK10938 403 SWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNR 437
|
|
| PLN03232 |
PLN03232 |
ABC transporter C family member; Provisional |
33-208 |
1.71e-07 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215640 [Multi-domain] Cd Length: 1495 Bit Score: 52.29 E-value: 1.71e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 33 GILGRNGSGKSTLMNMLSTILQQSSGTIEINNISLTQ--TKQIRKMIGYLPQD---------FDFYPNMKVKETlhylGI 101
Cdd:PLN03232 1266 GVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKfgLTDLRRVLSIIPQSpvlfsgtvrFNIDPFSEHNDA----DL 1341
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 102 LSGIPKANLKINVAASleKVNLVEHQNKKVKSLSGGMKKRLGIAQAIIHNPQVLIVDEPTAGLDpeerVRLRHLLSNLAK 181
Cdd:PLN03232 1342 WEALERAHIKDVIDRN--PFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVD----VRTDSLIQRTIR 1415
|
170 180 190
....*....|....*....|....*....|..
gi 488422644 182 DK-----IVIISTHIVSDIEstCENIAILDKG 208
Cdd:PLN03232 1416 EEfksctMLVIAHRLNTIID--CDKILVLSSG 1445
|
|
| PLN03073 |
PLN03073 |
ABC transporter F family; Provisional |
4-165 |
2.26e-07 |
|
ABC transporter F family; Provisional
Pssm-ID: 215558 [Multi-domain] Cd Length: 718 Bit Score: 51.78 E-value: 2.26e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 4 IVIKDVNKTYDGKTYALKNINLEIK-NGMFGILGRNGSGKSTLMNMLSTILQQSSGTI--------------EINNISLT 68
Cdd:PLN03073 509 ISFSDASFGYPGGPLLFKNLNFGIDlDSRIAMVGPNGIGKSTILKLISGELQPSSGTVfrsakvrmavfsqhHVDGLDLS 588
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 69 QTKQIrkmigYLPQDFDFYPNMKVKETLHYLGIlsgipKANLKInvaaslekvnlvehqnKKVKSLSGGMKKRLGIAQAI 148
Cdd:PLN03073 589 SNPLL-----YMMRCFPGVPEQKLRAHLGSFGV-----TGNLAL----------------QPMYTLSGGQKSRVAFAKIT 642
|
170
....*....|....*..
gi 488422644 149 IHNPQVLIVDEPTAGLD 165
Cdd:PLN03073 643 FKKPHILLLDEPSNHLD 659
|
|
| COG4938 |
COG4938 |
Predicted ATPase [General function prediction only]; |
19-213 |
3.08e-07 |
|
Predicted ATPase [General function prediction only];
Pssm-ID: 443965 [Multi-domain] Cd Length: 277 Bit Score: 50.74 E-value: 3.08e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 19 ALKNINLEIKNgMFGILGRNGSGKSTLMNMLSTILQ--------QSSGTIEINNISLTQTKQIRKMIGYLPQDFDFYPNM 90
Cdd:COG4938 11 PFKEAELELKP-LTLLIGPNGSGKSTLIQALLLLLQsnfiylpaERSGPARLYPSLVRELSDLGSRGEYTADFLAELENL 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 91 KV----KETLH--YLGILSGIPKANLKINVAASLEKVNLVEHQNKKVKSLSG---GMKKRLGIAQAIIH---NPQVLIVD 158
Cdd:COG4938 90 EIlddkSKELLeqVEEWLEKIFPGKVEVDASSDLVRLVFRPSGNGKRIPLSNvgsGVSELLPILLALLSaakPGSLLIIE 169
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 488422644 159 EPTAGLDPEERVRLRHLLSNLAKDKI-VIISTH---IVSDIestceNIAILDKGVIAYK 213
Cdd:COG4938 170 EPEAHLHPKAQSALAELLAELANSGVqVIIETHsdyILNGL-----RNLIKEGKLLDPD 223
|
|
| 3a01205 |
TIGR00956 |
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other] |
20-189 |
4.40e-07 |
|
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273362 [Multi-domain] Cd Length: 1394 Bit Score: 51.26 E-value: 4.40e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 20 LKNINLEIKNG-MFGILGRNGSGKSTLMNMLS---TILQQSSGTIEINNISLTQTKQirKMIGYLPQDFDFYPNMKVKET 95
Cdd:TIGR00956 779 LNNVDGWVKPGtLTALMGASGAGKTTLLNVLAervTTGVITGGDRLVNGRPLDSSFQ--RSIGYVQQQDLHLPTSTVRES 856
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 96 LHYLGIL---SGIPKANLKINVAASLEKVNLVEHQNKKV----KSLSGGMKKRLGIAQAIIHNPQVLI-VDEPTAGLDPE 167
Cdd:TIGR00956 857 LRFSAYLrqpKSVSKSEKMEYVEEVIKLLEMESYADAVVgvpgEGLNVEQRKRLTIGVELVAKPKLLLfLDEPTSGLDSQ 936
|
170 180
....*....|....*....|..
gi 488422644 168 ERVRLRHLLSNLAKDKIVIIST 189
Cdd:TIGR00956 937 TAWSICKLMRKLADHGQAILCT 958
|
|
| PRK11147 |
PRK11147 |
ABC transporter ATPase component; Reviewed |
6-178 |
4.41e-07 |
|
ABC transporter ATPase component; Reviewed
Pssm-ID: 236861 [Multi-domain] Cd Length: 635 Bit Score: 51.10 E-value: 4.41e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 6 IKDVNKTYDGKTYaLKNINLEIKNG-MFGILGRNGSGKSTLMNMLSTILQQSSGTIE----------------------- 61
Cdd:PRK11147 322 MENVNYQIDGKQL-VKDFSAQVQRGdKIALIGPNGCGKTTLLKLMLGQLQADSGRIHcgtklevayfdqhraeldpektv 400
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 62 INNisLTQTKQI-------RKMIGYLpQDFDFYPnmKVKETlhylgilsgiPkanlkinvaaslekvnlvehqnkkVKSL 134
Cdd:PRK11147 401 MDN--LAEGKQEvmvngrpRHVLGYL-QDFLFHP--KRAMT----------P------------------------VKAL 441
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 488422644 135 SGGMKKRLGIAQAIIHNPQVLIVDEPTAGLDPEERVRLRHLLSN 178
Cdd:PRK11147 442 SGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDS 485
|
|
| PRK15064 |
PRK15064 |
ABC transporter ATP-binding protein; Provisional |
22-208 |
4.69e-07 |
|
ABC transporter ATP-binding protein; Provisional
Pssm-ID: 237894 [Multi-domain] Cd Length: 530 Bit Score: 50.66 E-value: 4.69e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 22 NINLEIKNG-MFGILGRNGSGKSTLMNMLSTILQQSSGtieinNISLTQTKQirkmIGYLPQDFDFYPNMKVKETLhYLG 100
Cdd:PRK15064 19 NISVKFGGGnRYGLIGANGCGKSTFMKILGGDLEPSAG-----NVSLDPNER----LGKLRQDQFAFEEFTVLDTV-IMG 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 101 -------------ILS--------GIPKANLKINVA----------AS--LEKVNLVEHQ-NKKVKSLSGGMKKRLGIAQ 146
Cdd:PRK15064 89 htelwevkqerdrIYAlpemseedGMKVADLEVKFAemdgytaearAGelLLGVGIPEEQhYGLMSEVAPGWKLRVLLAQ 168
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 488422644 147 AIIHNPQVLIVDEPTAGLDPEERVRLRHLLsNLAKDKIVIIStHIVSDIESTCENIAILDKG 208
Cdd:PRK15064 169 ALFSNPDILLLDEPTNNLDINTIRWLEDVL-NERNSTMIIIS-HDRHFLNSVCTHMADLDYG 228
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
28-195 |
7.30e-07 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 47.75 E-value: 7.30e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 28 KNGMFGILGRNGSGKSTLMNMLSTILQQSSGTIEINNISltqtkqirkmigylpqdfdfypnmkvketlhylgilsgipk 107
Cdd:smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGE----------------------------------------- 39
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 108 anlkiNVAASLEKVNLVEHQNKKVKSLSGGMKKRLGIAQAIIHNPQVLIVDEPTAGLDPEERVRLRHLLSNLA------- 180
Cdd:smart00382 40 -----DILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLllllkse 114
|
170
....*....|....*
gi 488422644 181 KDKIVIISTHIVSDI 195
Cdd:smart00382 115 KNLTVILTTNDEKDL 129
|
|
| PTZ00243 |
PTZ00243 |
ABC transporter; Provisional |
20-223 |
9.52e-07 |
|
ABC transporter; Provisional
Pssm-ID: 240327 [Multi-domain] Cd Length: 1560 Bit Score: 50.16 E-value: 9.52e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 20 LKNINLEIKNGMFG-ILGRNGSGKSTLMNMLSTILQQSSGTIeinnisltqtkQIRKMIGYLPQDfDFYPNMKVKETLHY 98
Cdd:PTZ00243 676 LRDVSVSVPRGKLTvVLGATGSGKSTLLQSLLSQFEISEGRV-----------WAERSIAYVPQQ-AWIMNATVRGNILF 743
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 99 LG------ILSGIPKANLKINVA---ASLEkvnlVEHQNKKVkSLSGGMKKRLGIAQAIIHNPQVLIVDEPTAGLDPE-- 167
Cdd:PTZ00243 744 FDeedaarLADAVRVSQLEADLAqlgGGLE----TEIGEKGV-NLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHvg 818
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 488422644 168 ERVRLRHLLSNLAkDKIVIISTHIVSdIESTCENIAILDKGVIAYKGSIKNLIELS 223
Cdd:PTZ00243 819 ERVVEECFLGALA-GKTRVLATHQVH-VVPRADYVVALGDGRVEFSGSSADFMRTS 872
|
|
| PTZ00243 |
PTZ00243 |
ABC transporter; Provisional |
4-230 |
9.70e-07 |
|
ABC transporter; Provisional
Pssm-ID: 240327 [Multi-domain] Cd Length: 1560 Bit Score: 50.16 E-value: 9.70e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 4 IVIKDVNKTY-DGKTYALKNINLEIKNG-MFGILGRNGSGKSTLMNMLSTILQQSSGTIEIN--NISLTQTKQIRKMIGY 79
Cdd:PTZ00243 1309 LVFEGVQMRYrEGLPLVLRGVSFRIAPReKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNgrEIGAYGLRELRRQFSM 1388
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 80 LPQD---FDFYPNMKVKEtlhylgILSGIPKanlkiNVAASLEKVNLVEHqnkkVKSLSGGMKKR--------------- 141
Cdd:PTZ00243 1389 IPQDpvlFDGTVRQNVDP------FLEASSA-----EVWAALELVGLRER----VASESEGIDSRvleggsnysvgqrql 1453
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 142 LGIAQAIIHNPQVLIV-DEPTAGLDPE-ERVRLRHLLSNLAKDKIVIIS--THIVSDiestCENIAILDKGVIAYKGSIK 217
Cdd:PTZ00243 1454 MCMARALLKKGSGFILmDEATANIDPAlDRQIQATVMSAFSAYTVITIAhrLHTVAQ----YDKIIVMDHGAVAEMGSPR 1529
|
250
....*....|...
gi 488422644 218 NLIELSDNKVYEI 230
Cdd:PTZ00243 1530 ELVMNRQSIFHSM 1542
|
|
| ABCC_CFTR1 |
cd03291 |
ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C; The ... |
20-215 |
1.05e-06 |
|
ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C; The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Pssm-ID: 213258 [Multi-domain] Cd Length: 282 Bit Score: 49.08 E-value: 1.05e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 20 LKNINLEIKNG-MFGILGRNGSGKSTLMNMLSTILQQSSGTIEINN-ISLT-QTKQIrkMIGYLPQDFDF---YPNMKVK 93
Cdd:cd03291 53 LKNINLKIEKGeMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGrISFSsQFSWI--MPGTIKENIIFgvsYDEYRYK 130
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 94 etlhylgilSGIPKANLKINVAASLEKVNLVEHQNKkvKSLSGGMKKRLGIAQAIIHNPQVLIVDEPTAGLD--PEERVr 171
Cdd:cd03291 131 ---------SVVKACQLEEDITKFPEKDNTVLGEGG--ITLSGGQRARISLARAVYKDADLYLLDSPFGYLDvfTEKEI- 198
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 488422644 172 LRHLLSNLAKDKIVIISThivsdieSTCENIAILDKGVIAYKGS 215
Cdd:cd03291 199 FESCVCKLMANKTRILVT-------SKMEHLKKADKILILHEGS 235
|
|
| PRK10636 |
PRK10636 |
putative ABC transporter ATP-binding protein; Provisional |
33-186 |
1.29e-06 |
|
putative ABC transporter ATP-binding protein; Provisional
Pssm-ID: 236729 [Multi-domain] Cd Length: 638 Bit Score: 49.40 E-value: 1.29e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 33 GILGRNGSGKSTLMNMLSTILQQSSGTIEI-NNISLTQTKQ-------------------IRKMIGYLpQDFDFYPNMKV 92
Cdd:PRK10636 31 GLVGKNGCGKSTLLALLKNEISADGGSYTFpGNWQLAWVNQetpalpqpaleyvidgdreYRQLEAQL-HDANERNDGHA 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 93 KETLHylGILSGIPKANLKINVAASLEKVNLVEHQ-NKKVKSLSGGMKKRLGIAQAIIHNPQVLIVDEPTAGLDPEERVR 171
Cdd:PRK10636 110 IATIH--GKLDAIDAWTIRSRAASLLHGLGFSNEQlERPVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIW 187
|
170
....*....|....*
gi 488422644 172 LRHLLSNLAKDKIVI 186
Cdd:PRK10636 188 LEKWLKSYQGTLILI 202
|
|
| ABCC_SUR2 |
cd03288 |
ATP-binding cassette domain 2 of the sulfonylurea receptor SUR; The SUR domain 2. The ... |
4-224 |
1.44e-06 |
|
ATP-binding cassette domain 2 of the sulfonylurea receptor SUR; The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Pssm-ID: 213255 [Multi-domain] Cd Length: 257 Bit Score: 48.37 E-value: 1.44e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 4 IVIKDVNKTYDGKTY-ALKNINLEIKNGM-FGILGRNGSGKSTLMNMLSTILQQSSGTIEINNISLTQT--KQIRKMIGY 79
Cdd:cd03288 20 IKIHDLCVRYENNLKpVLKHVKAYIKPGQkVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLplHTLRSRLSI 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 80 LPQD---------FDFYPNMKVKETLhylgILSGIPKANLKINVAASLEKVNLVEHQNKKvkSLSGGMKKRLGIAQAIIH 150
Cdd:cd03288 100 ILQDpilfsgsirFNLDPECKCTDDR----LWEALEIAQLKNMVKSLPGGLDAVVTEGGE--NFSVGQRQLFCLARAFVR 173
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 488422644 151 NPQVLIVDEPTAGLDPEERVRLRHLLSNLAKDKIVIISTHIVSDIeSTCENIAILDKGVIAYKGSIKNLIELSD 224
Cdd:cd03288 174 KSSILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTI-LDADLVLVLSRGILVECDTPENLLAQED 246
|
|
| PLN03130 |
PLN03130 |
ABC transporter C family member; Provisional |
33-220 |
1.59e-06 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215595 [Multi-domain] Cd Length: 1622 Bit Score: 49.35 E-value: 1.59e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 33 GILGRNGSGKSTLMNMLSTILQQSSGTIEIN--NISLTQTKQIRKMIGYLPQDfdfyPNMkvketlhylgiLSGIPKANL 110
Cdd:PLN03130 1269 GIVGRTGAGKSSMLNALFRIVELERGRILIDgcDISKFGLMDLRKVLGIIPQA----PVL-----------FSGTVRFNL 1333
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 111 -------KINVAASLEKVNLVEHQNKKVKSL-----------SGGMKKRLGIAQAIIHNPQVLIVDEPTAGLDpeerVRL 172
Cdd:PLN03130 1334 dpfnehnDADLWESLERAHLKDVIRRNSLGLdaevseagenfSVGQRQLLSLARALLRRSKILVLDEATAAVD----VRT 1409
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 488422644 173 RHLLSNLAKDK-----IVIISTHIVSDIEstCENIAILDKGVIAYKGSIKNLI 220
Cdd:PLN03130 1410 DALIQKTIREEfksctMLIIAHRLNTIID--CDRILVLDAGRVVEFDTPENLL 1460
|
|
| PRK10636 |
PRK10636 |
putative ABC transporter ATP-binding protein; Provisional |
9-176 |
1.67e-06 |
|
putative ABC transporter ATP-binding protein; Provisional
Pssm-ID: 236729 [Multi-domain] Cd Length: 638 Bit Score: 49.01 E-value: 1.67e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 9 VNKTYDGKTyALKNINLEIKNG-MFGILGRNGSGKSTLMNMLSTILQQSSGTIEInnisltqTKQIRkmIGYLPQ-DFDF 86
Cdd:PRK10636 318 VSAGYGDRI-ILDSIKLNLVPGsRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGL-------AKGIK--LGYFAQhQLEF 387
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 87 ypnMKVKET-LHYLGILSgiPKAnlkinvaasLEKvNLVEH------QNKKV----KSLSGGMKKRLGIAQAIIHNPQVL 155
Cdd:PRK10636 388 ---LRADESpLQHLARLA--PQE---------LEQ-KLRDYlggfgfQGDKVteetRRFSGGEKARLVLALIVWQRPNLL 452
|
170 180
....*....|....*....|.
gi 488422644 156 IVDEPTAGLDPEERVRLRHLL 176
Cdd:PRK10636 453 LLDEPTNHLDLDMRQALTEAL 473
|
|
| SbcC |
COG0419 |
DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]; |
25-191 |
8.71e-06 |
|
DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair];
Pssm-ID: 440188 [Multi-domain] Cd Length: 204 Bit Score: 45.77 E-value: 8.71e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 25 LEIKNGMFGILGRNGSGKSTLMNMLSTIL--QQSSGTIEINN----------ISLT-----QTKQIRKMIGylpqDFDFY 87
Cdd:COG0419 19 IDFDDGLNLIVGPNGAGKSTILEAIRYALygKARSRSKLRSDlinvgseeasVELEfehggKRYRIERRQG----EFAEF 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 88 PNMKVKETLHYLGILSGIPK--------ANLKINVAASLEKVNLVEHQNKK----------VKSLSGGMKKRLGIAQAIi 149
Cdd:COG0419 95 LEAKPSERKEALKRLLGLEIyeelkerlKELEEALESALEELAELQKLKQEilaqlsgldpIETLSGGERLRLALADLL- 173
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 488422644 150 hnpqVLIVDepTAGLDPEERVRLRHLLSNLAkdkivIISTHI 191
Cdd:COG0419 174 ----SLILD--FGSLDEERLERLLDALEELA-----IITHVI 204
|
|
| PTZ00265 |
PTZ00265 |
multidrug resistance protein (mdr1); Provisional |
132-198 |
1.27e-05 |
|
multidrug resistance protein (mdr1); Provisional
Pssm-ID: 240339 [Multi-domain] Cd Length: 1466 Bit Score: 46.56 E-value: 1.27e-05
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 488422644 132 KSLSGGMKKRLGIAQAIIHNPQVLIVDEPTAGLDPEERVRLRHLLSNLAK--DKIVIISTHIVSDIEST 198
Cdd:PTZ00265 1357 KSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDkaDKTIITIAHRIASIKRS 1425
|
|
| PRK15134 |
PRK15134 |
microcin C ABC transporter ATP-binding protein YejF; Provisional |
126-208 |
2.09e-05 |
|
microcin C ABC transporter ATP-binding protein YejF; Provisional
Pssm-ID: 237917 [Multi-domain] Cd Length: 529 Bit Score: 45.85 E-value: 2.09e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 126 HQnkkvksLSGGMKKRLGIAQAIIHNPQVLIVDEPTAGLDPEERVRLRHLLSNLAKD---KIVIIsTHIVSDIESTCENI 202
Cdd:PRK15134 155 HQ------LSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQElnmGLLFI-THNLSIVRKLADRV 227
|
....*.
gi 488422644 203 AILDKG 208
Cdd:PRK15134 228 AVMQNG 233
|
|
| ABC_RNaseL_inhibitor |
cd03222 |
ATP-binding cassette domain of RNase L inhibitor; The ABC ATPase RNase L inhibitor (RLI) is a ... |
16-194 |
2.46e-05 |
|
ATP-binding cassette domain of RNase L inhibitor; The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213189 [Multi-domain] Cd Length: 177 Bit Score: 44.10 E-value: 2.46e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 16 KTYALKNINLE---IKNG-MFGILGRNGSGKSTLMNMLSTILQQSSGTIEINNISltqtkqirkmIGYLPQDFDfypnmk 91
Cdd:cd03222 8 KRYGVFFLLVElgvVKEGeVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGIT----------PVYKPQYID------ 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 92 vketlhylgilsgipkanlkinvaaslekvnlvehqnkkvksLSGGMKKRLGIAQAIIHNPQVLIVDEPTAGLDPEERVR 171
Cdd:cd03222 72 ------------------------------------------LSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLN 109
|
170 180
....*....|....*....|....*..
gi 488422644 172 ----LRHLLSNLAKDKIVIISTHIVSD 194
Cdd:cd03222 110 aaraIRRLSEEGKKTALVVEHDLAVLD 136
|
|
| PRK10982 |
PRK10982 |
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional |
5-211 |
2.90e-05 |
|
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Pssm-ID: 182880 [Multi-domain] Cd Length: 491 Bit Score: 45.11 E-value: 2.90e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 5 VIKDVNKTYDGKTYALKNINLEIKNG-MFGILGRNGSGKSTLMNMLSTILQQSSGTI-----EINNIS-----------L 67
Cdd:PRK10982 249 VILEVRNLTSLRQPSIRDVSFDLHKGeILGIAGLVGAKRTDIVETLFGIREKSAGTItlhgkKINNHNaneainhgfalV 328
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 68 TQTKQIRKMIGYLPQDFD-FYPNMKvkETLHYLGILSGIPKANLKINVAASLeKVNLVEHQNKkVKSLSGGMKKRLGIAQ 146
Cdd:PRK10982 329 TEERRSTGIYAYLDIGFNsLISNIR--NYKNKVGLLDNSRMKSDTQWVIDSM-RVKTPGHRTQ-IGSLSGGNQQKVIIGR 404
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 488422644 147 AIIHNPQVLIVDEPTAGLDPEERVRLRHLLSNLA-KDKIVIISTHIVSDIESTCENIAILDKGVIA 211
Cdd:PRK10982 405 WLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAkKDKGIIIISSEMPELLGITDRILVMSNGLVA 470
|
|
| MRP_assoc_pro |
TIGR00957 |
multi drug resistance-associated protein (MRP); This model describes multi drug ... |
2-221 |
3.61e-05 |
|
multi drug resistance-associated protein (MRP); This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. [Transport and binding proteins, Other]
Pssm-ID: 188098 [Multi-domain] Cd Length: 1522 Bit Score: 45.32 E-value: 3.61e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 2 NNIVIKDVNKTY-DGKTYALKNINLEIKNG-MFGILGRNGSGKSTLMNMLSTILQQSSGTIeinnisltqtkQIRKMIGY 79
Cdd:TIGR00957 635 NSITVHNATFTWaRDLPPTLNGITFSIPEGaLVAVVGQVGCGKSSLLSALLAEMDKVEGHV-----------HMKGSVAY 703
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 80 LPQDfDFYPNMKVKETLHYlGILSGIPKANLKINVAASLEKVNLVEHQNK-----KVKSLSGGMKKRLGIAQAIIHNPQV 154
Cdd:TIGR00957 704 VPQQ-AWIQNDSLRENILF-GKALNEKYYQQVLEACALLPDLEILPSGDRteigeKGVNLSGGQKQRVSLARAVYSNADI 781
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 488422644 155 LIVDEPTAGLDPEERvrlRHLLSN------LAKDKIVIISTHIVSDIESTcENIAILDKGVIAYKGSIKNLIE 221
Cdd:TIGR00957 782 YLFDDPLSAVDAHVG---KHIFEHvigpegVLKNKTRILVTHGISYLPQV-DVIIVMSGGKISEMGSYQELLQ 850
|
|
| PLN03073 |
PLN03073 |
ABC transporter F family; Provisional |
125-214 |
3.86e-05 |
|
ABC transporter F family; Provisional
Pssm-ID: 215558 [Multi-domain] Cd Length: 718 Bit Score: 44.85 E-value: 3.86e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 125 EHQNKKVKSLSGGMKKRLGIAQAIIHNPQVLIVDEPTAGLDPEERVRLRHLLsnLAKDKIVIISTHIVSDIESTCENIAI 204
Cdd:PLN03073 336 EMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYL--LKWPKTFIVVSHAREFLNTVVTDILH 413
|
90
....*....|.
gi 488422644 205 L-DKGVIAYKG 214
Cdd:PLN03073 414 LhGQKLVTYKG 424
|
|
| ABC_Class2 |
cd03227 |
ATP-binding cassette domain of non-transporter proteins; ABC-type Class 2 contains systems ... |
34-190 |
5.15e-05 |
|
ATP-binding cassette domain of non-transporter proteins; ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Pssm-ID: 213194 [Multi-domain] Cd Length: 162 Bit Score: 42.73 E-value: 5.15e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 34 ILGRNGSGKSTLMNMLSTILqqssgtieinnisltqtkqirkmigylpqdfdfypNMKVKETLHYLGILSGIPKAnlkin 113
Cdd:cd03227 26 ITGPNGSGKSTILDAIGLAL-----------------------------------GGAQSATRRRSGVKAGCIVA----- 65
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 114 vAASLEKVNLVehqnkkvKSLSGGMKKRLGIAQAIIH---NP-QVLIVDEPTAGLDPEERVRL-RHLLSNLAKDKIVIIS 188
Cdd:cd03227 66 -AVSAELIFTR-------LQLSGGEKELSALALILALaslKPrPLYILDEIDRGLDPRDGQALaEAILEHLVKGAQVIVI 137
|
..
gi 488422644 189 TH 190
Cdd:cd03227 138 TH 139
|
|
| PRK13540 |
PRK13540 |
cytochrome c biogenesis protein CcmA; Provisional |
20-190 |
5.98e-05 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 184127 [Multi-domain] Cd Length: 200 Bit Score: 43.01 E-value: 5.98e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 20 LKNINLEI-KNGMFGILGRNGSGKSTLMNMLSTILQQSSGTIEINNISLTQTK-QIRKMIGYLPQDFDFYPNMKVKETLH 97
Cdd:PRK13540 17 LQQISFHLpAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLcTYQKQLCFVGHRSGINPYLTLRENCL 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 98 Y-LGILSGipkaNLKINVAASLEKvnLVEHQNKKVKSLSGGMKKRLGIAQAIIHNPQVLIVDEPTAGLDpeER---VRLR 173
Cdd:PRK13540 97 YdIHFSPG----AVGITELCRLFS--LEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALD--ELsllTIIT 168
|
170
....*....|....*..
gi 488422644 174 HLLSNLAKDKIVIISTH 190
Cdd:PRK13540 169 KIQEHRAKGGAVLLTSH 185
|
|
| YbjD |
COG3593 |
Predicted ATP-dependent endonuclease of the OLD family, contains P-loop ATPase and TOPRIM ... |
20-230 |
1.01e-04 |
|
Predicted ATP-dependent endonuclease of the OLD family, contains P-loop ATPase and TOPRIM domains [Replication, recombination and repair];
Pssm-ID: 442812 [Multi-domain] Cd Length: 359 Bit Score: 43.45 E-value: 1.01e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 20 LKNINLEIKNGMFGILGRNGSGKSTLMNMLSTILQQSSG-----------------TIEI-------------NNISLTQ 69
Cdd:COG3593 14 IKDLSIELSDDLTVLVGENNSGKSSILEALRLLLGPSSSrkfdeedfylgddpdlpEIEIeltfgsllsrllrLLLKEED 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 70 TKQIRKMIGYLPQDFDfYPNMKVKETL-HYLGILSGIPKANLKIN---VAASLEKVNLVEHQNKKV--KSLSGGMKKRLG 143
Cdd:COG3593 94 KEELEEALEELNEELK-EALKALNELLsEYLKELLDGLDLELELSldeLEDLLKSLSLRIEDGKELplDRLGSGFQRLIL 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 144 IA--QAIIH-----NPQVLIVDEPTAGLDPEERVRLRHLLSNLAKDKI-VIISTH---IVSDIEStcENIAILDKGVIay 212
Cdd:COG3593 173 LAllSALAElkrapANPILLIEEPEAHLHPQAQRRLLKLLKELSEKPNqVIITTHsphLLSEVPL--ENIRRLRRDSG-- 248
|
250
....*....|....*...
gi 488422644 213 KGSIKNLIELSDNKVYEI 230
Cdd:COG3593 249 GTTSTKLIDLDDEDLRKL 266
|
|
| AAA_21 |
pfam13304 |
AAA domain, putative AbiEii toxin, Type IV TA system; Several members are annotated as being ... |
133-190 |
1.03e-04 |
|
AAA domain, putative AbiEii toxin, Type IV TA system; Several members are annotated as being of the abortive phage resistance system, in which case the family would be acting as the toxin for a type IV toxin-antitoxin resistance system.
Pssm-ID: 433102 [Multi-domain] Cd Length: 303 Bit Score: 43.15 E-value: 1.03e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 488422644 133 SLSGGMKKRLGIAQAII---HNPQVLIVDEPTAGLDPEERVRLRHLLSNLAKDKI-VIISTH 190
Cdd:pfam13304 236 ELSDGTKRLLALLAALLsalPKGGLLLIDEPESGLHPKLLRRLLELLKELSRNGAqLILTTH 297
|
|
| ABC_UvrA |
cd03238 |
ATP-binding cassette domain of the excision repair protein UvrA; Nucleotide excision repair in ... |
13-179 |
1.25e-04 |
|
ATP-binding cassette domain of the excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Pssm-ID: 213205 [Multi-domain] Cd Length: 176 Bit Score: 41.92 E-value: 1.25e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 13 YDGKTYALKNINLEI-KNGMFGILGRNGSGKSTLMNmlsTILQqssgtieinnisltqtKQIRKMIGYLPQDFDFYPNMK 91
Cdd:cd03238 4 SGANVHNLQNLDVSIpLNVLVVVTGVSGSGKSTLVN---EGLY----------------ASGKARLISFLPKFSRNKLIF 64
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 92 VKEtlhylgilsgipkanLKINVAASLEKVNLvehqNKKVKSLSGGMKKRLGIAQAIIHNPQ--VLIVDEPTAGLDPEEr 169
Cdd:cd03238 65 IDQ---------------LQFLIDVGLGYLTL----GQKLSTLSGGELQRVKLASELFSEPPgtLFILDEPSTGLHQQD- 124
|
170
....*....|
gi 488422644 170 vrLRHLLSNL 179
Cdd:cd03238 125 --INQLLEVI 132
|
|
| ABC_Rad50 |
cd03240 |
ATP-binding cassette domain of Rad50; The catalytic domains of Rad50 are similar to the ... |
131-190 |
1.47e-04 |
|
ATP-binding cassette domain of Rad50; The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Pssm-ID: 213207 [Multi-domain] Cd Length: 204 Bit Score: 41.82 E-value: 1.47e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 488422644 131 VKSLSGGMKK------RLGIAQAIIHNPQVLIVDEPTAGLDPEER-VRLRHLLSNLAKDKI--VIISTH 190
Cdd:cd03240 113 RGRCSGGEKVlasliiRLALAETFGSNCGILALDEPTTNLDEENIeESLAEIIEERKSQKNfqLIVITH 181
|
|
| AAA_29 |
pfam13555 |
P-loop containing region of AAA domain; |
12-53 |
2.44e-04 |
|
P-loop containing region of AAA domain;
Pssm-ID: 433304 [Multi-domain] Cd Length: 61 Bit Score: 38.35 E-value: 2.44e-04
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 488422644 12 TYDGKTYALKninleiKNGMFGILGRNGSGKSTLMNMLSTIL 53
Cdd:pfam13555 11 TFDGHTIPID------PRGNTLLTGPSGSGKSTLLDAIQTLL 46
|
|
| sufC |
PRK09580 |
cysteine desulfurase ATPase component; Reviewed |
6-165 |
5.83e-04 |
|
cysteine desulfurase ATPase component; Reviewed
Pssm-ID: 181965 [Multi-domain] Cd Length: 248 Bit Score: 40.54 E-value: 5.83e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 6 IKDVNKTYDGKTYaLKNINLEIKNG-MFGILGRNGSGKSTL---------------------MNMLSTILQQSSGT---- 59
Cdd:PRK09580 4 IKDLHVSVEDKAI-LRGLNLEVRPGeVHAIMGPNGSGKSTLsatlagredyevtggtvefkgKDLLELSPEDRAGEgifm 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488422644 60 -----IEINNIS-----LTQTKQIRKMIGYLPQD-FDFYPNMKVKETLhylgilsgipkanLKINVAASLEKVNLvehqn 128
Cdd:PRK09580 83 afqypVEIPGVSnqfflQTALNAVRSYRGQEPLDrFDFQDLMEEKIAL-------------LKMPEDLLTRSVNV----- 144
|
170 180 190
....*....|....*....|....*....|....*..
gi 488422644 129 kkvkSLSGGMKKRLGIAQAIIHNPQVLIVDEPTAGLD 165
Cdd:PRK09580 145 ----GFSGGEKKRNDILQMAVLEPELCILDESDSGLD 177
|
|
| uvrA |
PRK00349 |
excinuclease ABC subunit UvrA; |
1-45 |
3.39e-03 |
|
excinuclease ABC subunit UvrA;
Pssm-ID: 234734 [Multi-domain] Cd Length: 943 Bit Score: 38.90 E-value: 3.39e-03
10 20 30 40
....*....|....*....|....*....|....*....|....*..
gi 488422644 1 MNNIVIKdvnktydG-KTYALKNINLEI-KNGMFGILGRNGSGKSTL 45
Cdd:PRK00349 3 MDKIIIR-------GaREHNLKNIDLDIpRDKLVVFTGLSGSGKSSL 42
|
|
| uvrA |
PRK00349 |
excinuclease ABC subunit UvrA; |
20-47 |
4.86e-03 |
|
excinuclease ABC subunit UvrA;
Pssm-ID: 234734 [Multi-domain] Cd Length: 943 Bit Score: 38.52 E-value: 4.86e-03
10 20
....*....|....*....|....*....
gi 488422644 20 LKNINLEIKNGMF-GILGRNGSGKSTLMN 47
Cdd:PRK00349 625 LKNVDVEIPLGKFtCVTGVSGSGKSTLIN 653
|
|
| VirB4 |
COG3451 |
Type IV secretory pathway, VirB4 component [Intracellular trafficking, secretion, and ... |
22-49 |
4.96e-03 |
|
Type IV secretory pathway, VirB4 component [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 442674 [Multi-domain] Cd Length: 546 Bit Score: 38.39 E-value: 4.96e-03
10 20
....*....|....*....|....*...
gi 488422644 22 NINLEIKNGMFGILGRNGSGKSTLMNML 49
Cdd:COG3451 197 DFHDGLDNGNTLILGPSGSGKSFLLKLL 224
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
131-190 |
7.14e-03 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 37.96 E-value: 7.14e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 488422644 131 VKSLSGGMKK------RLGIAQAIIHNPQVLIVDEPTAGLDPEERVRLRHLLSNLAKD-----KIVIISTH 190
Cdd:PRK01156 799 IDSLSGGEKTavafalRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDssdipQVIMISHH 869
|
|
| |
