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Conserved domains on  [gi|488437701|ref|WP_002507086|]
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MULTISPECIES: YwpF-like family protein [Staphylococcus]

Protein Classification

YwpF-like family protein( domain architecture ID 10624531)

YwpF-like family protein similar to Staphylococcus aureus YwpF protein that may play a role in antibiotic resistance

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
YwpF pfam14183
YwpF-like protein; The YwpF-like protein family includes the B. subtilis YwpF protein, which ...
 2-132 1.09e-53

YwpF-like protein; The YwpF-like protein family includes the B. subtilis YwpF protein, which is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 146 and 167 amino acids in length. There is a conserved IIN sequence motif.


:

Pssm-ID: 433757  Cd Length: 133  Bit Score: 165.46  E-value: 1.09e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488437701    2 KTFKAVRFQIVSENGGVT--EYELEDGVIINKENSGTGWLLEIVISDFHYETMKQYMNNEDLLDIRVVITRPANDPALFD 79
Cdd:pfam14183   1 KTFKLVSLQIVEDDGGMKikEIPLIDGLIINKEDGEKTWLIEAYVDKEYAEFFEEYQQQQEELDVEVVITKKTNDPATFV 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 488437701   80 ATIKNISQLDDTISVVFECHIYTLRQVYAESLLEQLIDEGLTGEELKKSFNRM 132
Cdd:pfam14183  81 TTVKSITKLGDHISVLLEGKLVTRRQDYAEKLLEDLVDEGLSGEELLEEFKQR 133
 
Name Accession Description Interval E-value
YwpF pfam14183
YwpF-like protein; The YwpF-like protein family includes the B. subtilis YwpF protein, which ...
 2-132 1.09e-53

YwpF-like protein; The YwpF-like protein family includes the B. subtilis YwpF protein, which is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 146 and 167 amino acids in length. There is a conserved IIN sequence motif.


Pssm-ID: 433757  Cd Length: 133  Bit Score: 165.46  E-value: 1.09e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488437701    2 KTFKAVRFQIVSENGGVT--EYELEDGVIINKENSGTGWLLEIVISDFHYETMKQYMNNEDLLDIRVVITRPANDPALFD 79
Cdd:pfam14183   1 KTFKLVSLQIVEDDGGMKikEIPLIDGLIINKEDGEKTWLIEAYVDKEYAEFFEEYQQQQEELDVEVVITKKTNDPATFV 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 488437701   80 ATIKNISQLDDTISVVFECHIYTLRQVYAESLLEQLIDEGLTGEELKKSFNRM 132
Cdd:pfam14183  81 TTVKSITKLGDHISVLLEGKLVTRRQDYAEKLLEDLVDEGLSGEELLEEFKQR 133
 
Name Accession Description Interval E-value
YwpF pfam14183
YwpF-like protein; The YwpF-like protein family includes the B. subtilis YwpF protein, which ...
 2-132 1.09e-53

YwpF-like protein; The YwpF-like protein family includes the B. subtilis YwpF protein, which is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 146 and 167 amino acids in length. There is a conserved IIN sequence motif.


Pssm-ID: 433757  Cd Length: 133  Bit Score: 165.46  E-value: 1.09e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488437701    2 KTFKAVRFQIVSENGGVT--EYELEDGVIINKENSGTGWLLEIVISDFHYETMKQYMNNEDLLDIRVVITRPANDPALFD 79
Cdd:pfam14183   1 KTFKLVSLQIVEDDGGMKikEIPLIDGLIINKEDGEKTWLIEAYVDKEYAEFFEEYQQQQEELDVEVVITKKTNDPATFV 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 488437701   80 ATIKNISQLDDTISVVFECHIYTLRQVYAESLLEQLIDEGLTGEELKKSFNRM 132
Cdd:pfam14183  81 TTVKSITKLGDHISVLLEGKLVTRRQDYAEKLLEDLVDEGLSGEELLEEFKQR 133
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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