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Conserved domains on  [gi|488473141|ref|WP_002516811|]
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MULTISPECIES: shikimate kinase [Cutibacterium]

Protein Classification

shikimate kinase( domain architecture ID 11431165)

shikimate kinase catalyzes the specific phosphorylation of the 3-hydroxylgroup of shikimic acid using ATP as a cosubstrate

CATH:  3.40.50.300
EC:  2.7.1.71
Gene Ontology:  GO:0009073|GO:0004765|GO:0000287|GO:0005524|GO:0008652
PubMed:  2279393|7870841
SCOP:  4003925

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
AroK COG0703
Shikimate kinase [Amino acid transport and metabolism]; Shikimate kinase is part of the ...
 2-163 1.95e-56

Shikimate kinase [Amino acid transport and metabolism]; Shikimate kinase is part of the Pathway/BioSystem: Aromatic amino acid biosynthesis


:

Pssm-ID: 440467 [Multi-domain]  Cd Length: 165  Bit Score: 174.55  E-value: 1.95e-56
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488473141   2 IALIGAPGSGKSTVGPLLAQRLGEEFVDVDAVIEQAEGRDIPEIFLIDGESYFRKVErRETLAAI--ERGGVVSLGGGAP 79
Cdd:COG0703    1 IVLIGMMGAGKSTVGRLLAKRLGLPFVDTDAEIEERAGMSIPEIFAEEGEAGFRELE-REVLAELleEENAVIATGGGAV 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488473141  80 ADVEVGNALDRMC-VVWLDVSARTAADRVGlKDTGRPLL-GGQVHSQLVRLMKERRAVYQRPATIRVATDTLTPEQVVDV 157
Cdd:COG0703   80 LSPENRELLKEHGtVVYLDASPETLLERLR-RDDNRPLLqGEDPRERLEELLAEREPLYREVADITVDTDGRSPEEVVDE 158


                 ....*.
gi 488473141 158 IVSELA 163
Cdd:COG0703  159 ILEALE 164
 
Name Accession Description Interval E-value
AroK COG0703
Shikimate kinase [Amino acid transport and metabolism]; Shikimate kinase is part of the ...
 2-163 1.95e-56

Shikimate kinase [Amino acid transport and metabolism]; Shikimate kinase is part of the Pathway/BioSystem: Aromatic amino acid biosynthesis


Pssm-ID: 440467 [Multi-domain]  Cd Length: 165  Bit Score: 174.55  E-value: 1.95e-56
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488473141   2 IALIGAPGSGKSTVGPLLAQRLGEEFVDVDAVIEQAEGRDIPEIFLIDGESYFRKVErRETLAAI--ERGGVVSLGGGAP 79
Cdd:COG0703    1 IVLIGMMGAGKSTVGRLLAKRLGLPFVDTDAEIEERAGMSIPEIFAEEGEAGFRELE-REVLAELleEENAVIATGGGAV 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488473141  80 ADVEVGNALDRMC-VVWLDVSARTAADRVGlKDTGRPLL-GGQVHSQLVRLMKERRAVYQRPATIRVATDTLTPEQVVDV 157
Cdd:COG0703   80 LSPENRELLKEHGtVVYLDASPETLLERLR-RDDNRPLLqGEDPRERLEELLAEREPLYREVADITVDTDGRSPEEVVDE 158


                 ....*.
gi 488473141 158 IVSELA 163
Cdd:COG0703  159 ILEALE 164
aroK PRK00131
shikimate kinase; Reviewed
 2-163 1.28e-54

shikimate kinase; Reviewed


Pssm-ID: 234654 [Multi-domain]  Cd Length: 175  Bit Score: 170.37  E-value: 1.28e-54
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488473141   2 IALIGAPGSGKSTVGPLLAQRLGEEFVDVDAVIEQAEGRDIPEIFLIDGESYFRKVErRETLAAI--ERGGVVSLGGGAP 79
Cdd:PRK00131   7 IVLIGFMGAGKSTIGRLLAKRLGYDFIDTDHLIEARAGKSIPEIFEEEGEAAFRELE-EEVLAELlaRHNLVISTGGGAV 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488473141  80 ADVEVGNALDRMC-VVWLDVSARTAADRVGlKDTGRPLL-GGQVHSQLVRLMKERRAVYQRPATIRVATDTLTPEQVVDV 157
Cdd:PRK00131  86 LREENRALLRERGtVVYLDASFEELLRRLR-RDRNRPLLqTNDPKEKLRDLYEERDPLYEEVADITVETDGRSPEEVVNE 164


                 ....*.
gi 488473141 158 IVSELA 163
Cdd:PRK00131 165 ILEKLE 170
SK cd00464
Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic ...
 2-153 1.28e-53

Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.


Pssm-ID: 238260 [Multi-domain]  Cd Length: 154  Bit Score: 166.96  E-value: 1.28e-53
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488473141   2 IALIGAPGSGKSTVGPLLAQRLGEEFVDVDAVIEQAEGRDIPEIFLIDGESYFRKVERR-ETLAAIERGGVVSLGGGAPA 80
Cdd:cd00464    2 IVLIGMMGAGKTTVGRLLAKALGLPFVDLDELIEQRAGMSIPEIFAEEGEEGFRELEREvLLLLLTKENAVIATGGGAVL 81

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 488473141  81 DVEVGNALDRMC-VVWLDVSARTAADRVGlKDTGRPLLGGQVHSQLVRLMKERRAVYQRPATIRVATDTLTPEQ 153
Cdd:cd00464   82 REENRRLLLENGiVVWLDASPEELLERLA-RDKTRPLLQDEDPERLRELLEEREPLYREVADLTIDTDELSPEE 154
SKI pfam01202
Shikimate kinase;
8-163 1.33e-39

Shikimate kinase;


Pssm-ID: 426122 [Multi-domain]  Cd Length: 159  Bit Score: 131.55  E-value: 1.33e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488473141    8 PGSGKSTVGPLLAQRLGEEFVDVDAVIEQAEGRDIPEIFLIDGESYFRKVErRETLAAI--ERGGVVSLGGGAPADVEVG 85
Cdd:pfam01202   1 MGAGKSTIGRLLAKALGLPFIDTDEEIEKRTGMSIAEIFEEEGEEGFRRLE-SEVLKELlaEHGLVIATGGGAVLSEENR 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488473141   86 NAL-DRMCVVWLDVSARTAADRVGlKDTGRPLLGGQVHSQLVR--LMKERRAVYQRPATIRVATDTLTPEQVVDVIVSEL 162
Cdd:pfam01202  80 DLLkERGIVIYLDAPLEVLLERLK-RDKTRPLLQNKDPEEELLelLFEERDPLYEEAADIVIDTDESSPEEVATEILEAL 158


                  .
gi 488473141  163 A 163
Cdd:pfam01202 159 E 159
cyt_kin_arch TIGR02173
cytidylate kinase, putative; Proteins in this family are believed to be cytidylate kinase. ...
 1-111 2.31e-04

cytidylate kinase, putative; Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.


Pssm-ID: 274012 [Multi-domain]  Cd Length: 171  Bit Score: 39.71  E-value: 2.31e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488473141    1 MIALIGAPGSGKSTVGPLLAQRLGEEFV---DVDAVIEQAEGRDIPEiFL--------IDgesyfRKVERRETLAAIERG 69
Cdd:TIGR02173   2 IITISGPPGSGKTTVAKILAEKLSLKLIsagDIFRELAAKMGLDLIE-FLnyaeenpeID-----KKIDRRIHEIALKEK 75

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 488473141   70 GVV---SLGG---GAPADVEvgnaldrmcvVWLDVSARTAADRVGLKD 111
Cdd:TIGR02173  76 NVVlesRLAGwivREYADVK----------IWLKAPLEVRARRIAKRE 113
AAA smart00382
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ...
 2-118 4.79e-03

ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.


Pssm-ID: 214640 [Multi-domain]  Cd Length: 148  Bit Score: 35.81  E-value: 4.79e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488473141     2 IALIGAPGSGKSTVGPLLAQRLGEE-----FVDVDAVIEQAEGRDIPEIFLIDGESYFRKVERRETLAAIERggvvslgg 76
Cdd:smart00382   5 ILIVGPPGSGKTTLARALARELGPPgggviYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARK-------- 76

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*.
gi 488473141    77 gAPADV----EVGNALDRMCVVWLDVSARTAADRVGLKDTGRPLLG 118
Cdd:smart00382  77 -LKPDVlildEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVIL 121
 
Name Accession Description Interval E-value
AroK COG0703
Shikimate kinase [Amino acid transport and metabolism]; Shikimate kinase is part of the ...
 2-163 1.95e-56

Shikimate kinase [Amino acid transport and metabolism]; Shikimate kinase is part of the Pathway/BioSystem: Aromatic amino acid biosynthesis


Pssm-ID: 440467 [Multi-domain]  Cd Length: 165  Bit Score: 174.55  E-value: 1.95e-56
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488473141   2 IALIGAPGSGKSTVGPLLAQRLGEEFVDVDAVIEQAEGRDIPEIFLIDGESYFRKVErRETLAAI--ERGGVVSLGGGAP 79
Cdd:COG0703    1 IVLIGMMGAGKSTVGRLLAKRLGLPFVDTDAEIEERAGMSIPEIFAEEGEAGFRELE-REVLAELleEENAVIATGGGAV 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488473141  80 ADVEVGNALDRMC-VVWLDVSARTAADRVGlKDTGRPLL-GGQVHSQLVRLMKERRAVYQRPATIRVATDTLTPEQVVDV 157
Cdd:COG0703   80 LSPENRELLKEHGtVVYLDASPETLLERLR-RDDNRPLLqGEDPRERLEELLAEREPLYREVADITVDTDGRSPEEVVDE 158


                 ....*.
gi 488473141 158 IVSELA 163
Cdd:COG0703  159 ILEALE 164
aroK PRK00131
shikimate kinase; Reviewed
 2-163 1.28e-54

shikimate kinase; Reviewed


Pssm-ID: 234654 [Multi-domain]  Cd Length: 175  Bit Score: 170.37  E-value: 1.28e-54
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488473141   2 IALIGAPGSGKSTVGPLLAQRLGEEFVDVDAVIEQAEGRDIPEIFLIDGESYFRKVErRETLAAI--ERGGVVSLGGGAP 79
Cdd:PRK00131   7 IVLIGFMGAGKSTIGRLLAKRLGYDFIDTDHLIEARAGKSIPEIFEEEGEAAFRELE-EEVLAELlaRHNLVISTGGGAV 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488473141  80 ADVEVGNALDRMC-VVWLDVSARTAADRVGlKDTGRPLL-GGQVHSQLVRLMKERRAVYQRPATIRVATDTLTPEQVVDV 157
Cdd:PRK00131  86 LREENRALLRERGtVVYLDASFEELLRRLR-RDRNRPLLqTNDPKEKLRDLYEERDPLYEEVADITVETDGRSPEEVVNE 164


                 ....*.
gi 488473141 158 IVSELA 163
Cdd:PRK00131 165 ILEKLE 170
SK cd00464
Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic ...
 2-153 1.28e-53

Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.


Pssm-ID: 238260 [Multi-domain]  Cd Length: 154  Bit Score: 166.96  E-value: 1.28e-53
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488473141   2 IALIGAPGSGKSTVGPLLAQRLGEEFVDVDAVIEQAEGRDIPEIFLIDGESYFRKVERR-ETLAAIERGGVVSLGGGAPA 80
Cdd:cd00464    2 IVLIGMMGAGKTTVGRLLAKALGLPFVDLDELIEQRAGMSIPEIFAEEGEEGFRELEREvLLLLLTKENAVIATGGGAVL 81

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 488473141  81 DVEVGNALDRMC-VVWLDVSARTAADRVGlKDTGRPLLGGQVHSQLVRLMKERRAVYQRPATIRVATDTLTPEQ 153
Cdd:cd00464   82 REENRRLLLENGiVVWLDASPEELLERLA-RDKTRPLLQDEDPERLRELLEEREPLYREVADLTIDTDELSPEE 154
SKI pfam01202
Shikimate kinase;
8-163 1.33e-39

Shikimate kinase;


Pssm-ID: 426122 [Multi-domain]  Cd Length: 159  Bit Score: 131.55  E-value: 1.33e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488473141    8 PGSGKSTVGPLLAQRLGEEFVDVDAVIEQAEGRDIPEIFLIDGESYFRKVErRETLAAI--ERGGVVSLGGGAPADVEVG 85
Cdd:pfam01202   1 MGAGKSTIGRLLAKALGLPFIDTDEEIEKRTGMSIAEIFEEEGEEGFRRLE-SEVLKELlaEHGLVIATGGGAVLSEENR 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488473141   86 NAL-DRMCVVWLDVSARTAADRVGlKDTGRPLLGGQVHSQLVR--LMKERRAVYQRPATIRVATDTLTPEQVVDVIVSEL 162
Cdd:pfam01202  80 DLLkERGIVIYLDAPLEVLLERLK-RDKTRPLLQNKDPEEELLelLFEERDPLYEEAADIVIDTDESSPEEVATEILEAL 158


                  .
gi 488473141  163 A 163
Cdd:pfam01202 159 E 159
PRK13946 PRK13946
shikimate kinase; Provisional
 2-167 2.26e-29

shikimate kinase; Provisional


Pssm-ID: 184411 [Multi-domain]  Cd Length: 184  Bit Score: 106.16  E-value: 2.26e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488473141   2 IALIGAPGSGKSTVGPLLAQRLGEEFVDVDAVIEQAEGRDIPEIFLIDGESYFRKVERRETLAAIERG-GVVSLGGGAPA 80
Cdd:PRK13946  13 VVLVGLMGAGKSTVGRRLATMLGLPFLDADTEIERAARMTIAEIFAAYGEPEFRDLERRVIARLLKGGpLVLATGGGAFM 92

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488473141  81 DVEVGNALDRMCV-VWLDVSARTAADRVGLKDTgRPLLGGQVHSQ-LVRLMKERRAVYQRpATIRVATDTLTPEQVVDVI 158
Cdd:PRK13946  93 NEETRAAIAEKGIsVWLKADLDVLWERVSRRDT-RPLLRTADPKEtLARLMEERYPVYAE-ADLTVASRDVPKEVMADEV 170


                 ....*....
gi 488473141 159 VSELADLKE 167
Cdd:PRK13946 171 IEALAAYLE 179
aroK PRK05057
shikimate kinase AroK;
2-162 4.26e-25

shikimate kinase AroK;


Pssm-ID: 235335 [Multi-domain]  Cd Length: 172  Bit Score: 94.78  E-value: 4.26e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488473141   2 IALIGAPGSGKSTVGPLLAQRLGEEFVDVDAVIEQAEGRDIPEIFLIDGESYFRKVERRETLAAIERGGVV-SLGGGAPA 80
Cdd:PRK05057   7 IFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRTGADIGWVFDVEGEEGFRDREEKVINELTEKQGIVlATGGGSVK 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488473141  81 DVEVGNALD-RMCVVWLDVS-----ARTAadrvglKDTGRPLLGGQVHSQ-LVRLMKERRAVYQRPATIRVATDTLTPEQ 153
Cdd:PRK05057  87 SRETRNRLSaRGVVVYLETTiekqlARTQ------RDKKRPLLQVDDPREvLEALANERNPLYEEIADVTIRTDDQSAKV 160


                 ....*....
gi 488473141 154 VVDVIVSEL 162
Cdd:PRK05057 161 VANQIIHML 169
PRK13947 PRK13947
shikimate kinase; Provisional
 2-166 5.93e-24

shikimate kinase; Provisional


Pssm-ID: 184412 [Multi-domain]  Cd Length: 171  Bit Score: 91.69  E-value: 5.93e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488473141   2 IALIGAPGSGKSTVGPLLAQRLGEEFVDVDAVIEQAEGRDIPEIFLIDGESYFRKVERRET-LAAIERGGVVSLGGGAPA 80
Cdd:PRK13947   4 IVLIGFMGTGKTTVGKRVATTLSFGFIDTDKEIEKMTGMTVAEIFEKDGEVRFRSEEKLLVkKLARLKNLVIATGGGVVL 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488473141  81 DVE-VGNALDRMCVVWLDVSARTAADRVGlKDTGRPLLG-GQVHSQLVRLMKERRAVYqRPATIRVATDTLTPEQVVDVI 158
Cdd:PRK13947  84 NPEnVVQLRKNGVVICLKARPEVILRRVG-KKKSRPLLMvGDPEERIKELLKEREPFY-DFADYTIDTGDMTIDEVAEEI 161


                 ....*...
gi 488473141 159 VSELADLK 166
Cdd:PRK13947 162 IKAYLKLK 169
PRK14021 PRK14021
bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
 4-152 2.87e-23

bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional


Pssm-ID: 184458 [Multi-domain]  Cd Length: 542  Bit Score: 94.93  E-value: 2.87e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488473141   4 LIGAPGSGKSTVGPLLAQRLGEEFVDVDAVIEQAEGRDIPEIFLIDGESYFRKVERRETLAAIER-GGVVSLGGGAPADV 82
Cdd:PRK14021  11 IIGMMGAGKTRVGKEVAQMMRLPFADADVEIEREIGMSIPSYFEEYGEPAFREVEADVVADMLEDfDGIFSLGGGAPMTP 90

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 488473141  83 EVGNALDRMC-----VVWLDVSARTAADRVGlKDTGRPLLGGQVHSQLVRLMKERRAVYQRPATIRVATDTLTPE 152
Cdd:PRK14021  91 STQHALASYIahggrVVYLDADPKEAMERAN-RGGGRPMLNGDANKRWKKLFKQRDPVFRQVANVHVHTRGLTPQ 164
PRK13948 PRK13948
shikimate kinase; Provisional
 2-162 2.06e-21

shikimate kinase; Provisional


Pssm-ID: 184413 [Multi-domain]  Cd Length: 182  Bit Score: 85.61  E-value: 2.06e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488473141   2 IALIGAPGSGKSTVGPLLAQRLGEEFVDVDAVIEQAEGRDIPEIFLIDGESYFRKVErRETLAAIERG--GVVSLGGGAP 79
Cdd:PRK13948  13 VALAGFMGTGKSRIGWELSRALMLHFIDTDRYIERVTGKSIPEIFRHLGEAYFRRCE-AEVVRRLTRLdyAVISLGGGTF 91

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488473141  80 ADVEVGNA-LDRMCVVWLDVSARTAADRVglKDTGRPLL-GGQVHSQLVRLMKERRAVYqRPATIRVATDTLTPEQVVDV 157
Cdd:PRK13948  92 MHEENRRKlLSRGPVVVLWASPETIYERT--RPGDRPLLqVEDPLGRIRTLLNEREPVY-RQATIHVSTDGRRSEEVVEE 168


                 ....*
gi 488473141 158 IVSEL 162
Cdd:PRK13948 169 IVEKL 173
PRK13949 PRK13949
shikimate kinase; Provisional
 2-162 8.25e-19

shikimate kinase; Provisional


Pssm-ID: 140006 [Multi-domain]  Cd Length: 169  Bit Score: 78.62  E-value: 8.25e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488473141   2 IALIGAPGSGKSTVGPLLAQRLGEEFVDVDAVIEQAEGRDIPEIFLIDGESYFRKVERR--ETLAAIErGGVVSLGGGAP 79
Cdd:PRK13949   4 IFLVGYMGAGKTTLGKALARELGLSFIDLDFFIENRFHKTVGDIFAERGEAVFRELERNmlHEVAEFE-DVVISTGGGAP 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488473141  80 A---DVEVGNALDRmcVVWLDVSARTAADRVGLKDTGRPLLGGQVHSQL---VRLMKERRAVYQRPATIRVATDTLTPEQ 153
Cdd:PRK13949  83 CffdNMELMNASGT--TVYLKVSPEVLFVRLRLAKQQRPLLKGKSDEELldfIIEALEKRAPFYRQAKIIFNADKLEDES 160


                 ....*....
gi 488473141 154 VVDVIVSEL 162
Cdd:PRK13949 161 QIEQLVQRL 169
PRK08154 PRK08154
anaerobic benzoate catabolism transcriptional regulator; Reviewed
 2-156 2.25e-18

anaerobic benzoate catabolism transcriptional regulator; Reviewed


Pssm-ID: 236167 [Multi-domain]  Cd Length: 309  Bit Score: 80.00  E-value: 2.25e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488473141   2 IALIGAPGSGKSTVGPLLAQRLGEEFVDVDAVIEQAEGRDIPEIFLIDGESYFRKVERR--ETLAAIERGGVVSLGGGAP 79
Cdd:PRK08154 136 IALIGLRGAGKSTLGRMLAARLGVPFVELNREIEREAGLSVSEIFALYGQEGYRRLERRalERLIAEHEEMVLATGGGIV 215

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 488473141  80 ADVEVGNALDRMCV-VWLDVSARTAADRVGLKDTGRPLLGG-QVHSQLVRLMKERRAVYQRpATIRVATDTLTPEQVVD 156
Cdd:PRK08154 216 SEPATFDLLLSHCYtVWLKASPEEHMARVRAQGDLRPMADNrEAMEDLRRILASREPLYAR-ADAVVDTSGLTVAQSLA 293
PLN02199 PLN02199
shikimate kinase
 4-163 3.20e-18

shikimate kinase


Pssm-ID: 177850 [Multi-domain]  Cd Length: 303  Bit Score: 79.36  E-value: 3.20e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488473141   4 LIGAPGSGKSTVGPLLAQRLGEEFVDVDAVIEQA-EGRDIPEIFLIDGESYFRKverRETLA----AIERGGVVSLGGGA 78
Cdd:PLN02199 107 LVGMMGSGKTTVGKLMSKVLGYTFFDCDTLIEQAmNGTSVAEIFVHHGENFFRG---KETDAlkklSSRYQVVVSTGGGA 183

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488473141  79 PADVEVGNALDRMCVVWLDVSARTAADRVGLKDTG-RPLL---GGQVHS----QLVRLMKERRAVYQRpATIRVATDTLT 150
Cdd:PLN02199 184 VIRPINWKYMHKGISIWLDVPLEALAHRIAAVGTDsRPLLhdeSGDAYSvafkRLSAIWDERGEAYTN-ANARVSLENIA 262

                        170
                 ....*....|....*..
gi 488473141 151 PE----QVVDVIVSELA 163
Cdd:PLN02199 263 AKrgykNVSDLTPTEIA 279
PRK13951 PRK13951
bifunctional shikimate kinase AroK/3-dehydroquinate synthase AroB;
2-167 3.37e-17

bifunctional shikimate kinase AroK/3-dehydroquinate synthase AroB;


Pssm-ID: 172457 [Multi-domain]  Cd Length: 488  Bit Score: 77.64  E-value: 3.37e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488473141   2 IALIGAPGSGKSTVGPLLAQRLGEEFVDVDAVIEQAEGRDIPEIFLIDGESYFRKVERRETLAAIERGG-VVSLGGGAPA 80
Cdd:PRK13951   3 IFLVGMMGSGKSTIGKRVSEVLDLQFIDMDEEIERREGRSVRRIFEEDGEEYFRLKEKELLRELVERDNvVVATGGGVVI 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488473141  81 DVEVGNALDRMCVVWLDVSARTAADRVGLKDtgRPLLgGQVHSQLVRLMKERRAVYQRPATIRvaTDTLTPEQVVDVIVS 160
Cdd:PRK13951  83 DPENRELLKKEKTLFLYAPPEVLMERVTTEN--RPLL-REGKERIREIWERRKQFYTEFRGID--TSKLNEWETTALVVL 157


                 ....*..
gi 488473141 161 ELADLKE 167
Cdd:PRK13951 158 EALDEKE 164
aroL PRK03731
shikimate kinase AroL;
2-163 1.20e-16

shikimate kinase AroL;


Pssm-ID: 235153 [Multi-domain]  Cd Length: 171  Bit Score: 72.67  E-value: 1.20e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488473141   2 IALIGAPGSGKSTVGPLLAQRLGEEFVDVDAVIEQAEGRDIPEIFLIDGESYFRKVErRETLAAIERGG-VVSLGGGApa 80
Cdd:PRK03731   5 LFLVGARGCGKTTVGMALAQALGYRFVDTDQWLQSTSNMTVAEIVEREGWAGFRARE-SAALEAVTAPStVIATGGGI-- 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488473141  81 dveVGNALDR--M----CVVWLDVSARTAADRVGL--KDTGRPLLGGQVHSQLVR-LMKERRAVYQRPATIrVATDTLTP 151
Cdd:PRK03731  82 ---ILTEENRhfMrnngIVIYLCAPVSVLANRLEAnpEEDQRPTLTGKPISEEVAeVLAEREALYREVAHH-IIDATQPP 157

                        170
                 ....*....|..
gi 488473141 152 EQVVDVIVSELA 163
Cdd:PRK03731 158 SQVVSEILSALA 169
CmkB COG1102
Cytidylate kinase [Nucleotide transport and metabolism];
8-159 5.91e-07

Cytidylate kinase [Nucleotide transport and metabolism];


Pssm-ID: 440719 [Multi-domain]  Cd Length: 188  Bit Score: 47.13  E-value: 5.91e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488473141   8 PGSGKSTVGPLLAQRLGEEFVDVDAVIEQAEGRDIPEIFLI---------------DGESYFRKVERReTLAAIERGGVV 72
Cdd:COG1102    9 PGSGGTTIAKRLAEKLGLPLYDGEILREAAKERGLSEEEFEkldekapsllyrdtaEEDEIDRALDKV-IRELARKGNCV 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488473141  73 SLGGGAP---ADVEvgNALDrmcvVWLDVSARTAADRVgLKDTGRPLlgGQVHSQLVRLMKERRAVYQRPATIRVA---- 145
Cdd:COG1102   88 IVGRLADwilRDRP--NVLK----VFLTAPLEVRVKRI-AEREGISE--EEAEKEIKKRDKSRAKYYKYYYGIDWGdpsn 158

                        170       180
                 ....*....|....*....|
gi 488473141 146 ------TDTLTPEQVVDVIV 159
Cdd:COG1102  159 ydlvinTSRLGIEEAVDLIL 178
PRK03839 PRK03839
putative kinase; Provisional
 2-167 2.14e-06

putative kinase; Provisional


Pssm-ID: 179660  Cd Length: 180  Bit Score: 45.48  E-value: 2.14e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488473141   2 IALIGAPGSGKSTVGPLLAQRLGEEFVDV-DAVIEQAEGRDIPEIFLIDGESYFRKVERRetlaaiERGGVVSLGGgapa 80
Cdd:PRK03839   3 IAITGTPGVGKTTVSKLLAEKLGYEYVDLtEFALKKGIGEEKDDEMEIDFDKLAYFIEEE------FKEKNVVLDG---- 72

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488473141  81 dvEVGNALDRMCVVWLDVSARTAADRVGLKDTGRPLLGGQVHSQLVRLMKeRRAVYQRPATIRVATDTLTPEQVVDVIVS 160
Cdd:PRK03839  73 --HLSHLLPVDYVIVLRAHPKIIKERLKERGYSKKKILENVEAELVDVCL-CEALEEKEKVIEVDTTGKTPEEVVEEILE 149


                 ....*..
gi 488473141 161 ELADLKE 167
Cdd:PRK03839 150 LIKSGKK 156
GntK COG3265
Gluconate kinase [Carbohydrate transport and metabolism]; Gluconate kinase is part of the ...
 2-32 1.32e-05

Gluconate kinase [Carbohydrate transport and metabolism]; Gluconate kinase is part of the Pathway/BioSystem: Non-phosphorylated Entner-Doudoroff pathway


Pssm-ID: 442496 [Multi-domain]  Cd Length: 164  Bit Score: 42.81  E-value: 1.32e-05
                         10        20        30
                 ....*....|....*....|....*....|.
gi 488473141   2 IALIGAPGSGKSTVGPLLAQRLGEEFVDVDA 32
Cdd:COG3265    4 IVVMGVSGSGKSTVGQALAERLGWPFIDGDD 34
Fap7 COG1936
Broad-specificity NMP kinase [Nucleotide transport and metabolism];
1-35 2.08e-05

Broad-specificity NMP kinase [Nucleotide transport and metabolism];


Pssm-ID: 441539 [Multi-domain]  Cd Length: 173  Bit Score: 42.50  E-value: 2.08e-05
                         10        20        30
                 ....*....|....*....|....*....|....*.
gi 488473141   1 MIALIGAPGSGKSTVGPLLAQRLGEEFVDV-DAVIE 35
Cdd:COG1936    2 RIAITGTPGTGKTTVAKLLAERLGLEVIHLnDLVKE 37
Cytidylate_kin2 pfam13189
Cytidylate kinase-like family; This family includes enzymes related to cytidylate kinase.
 2-64 3.84e-05

Cytidylate kinase-like family; This family includes enzymes related to cytidylate kinase.


Pssm-ID: 433023 [Multi-domain]  Cd Length: 176  Bit Score: 41.85  E-value: 3.84e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 488473141    2 IALIGAPGSGKSTVGPLLAQRLGEEFVDVDAVIEQAEGRDIPeiflidgESYFRKVERRETLA 64
Cdd:pfam13189   2 ITISRQYGSGGTTIAKKLAEKLGYPFYDREILDEIAKELGIS-------EEEFELFDEKSRLS 57
PRK00625 PRK00625
shikimate kinase; Provisional
 2-98 4.35e-05

shikimate kinase; Provisional


Pssm-ID: 134335 [Multi-domain]  Cd Length: 173  Bit Score: 41.67  E-value: 4.35e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488473141   2 IALIGAPGSGKSTVGPLLAQRLGEEFVDVDAVIEQAEGRDIP----EIFLIDGESYFRKVERRETLAAIERGGVVSLGGG 77
Cdd:PRK00625   3 IFLCGLPTVGKTSFGKALAKFLSLPFFDTDDLIVSNYHGALYsspkEIYQAYGEEGFCREEFLALTSLPVIPSIVALGGG 82

                         90       100
                 ....*....|....*....|..
gi 488473141  78 APADVEVGNAL-DRMCVVWLDV 98
Cdd:PRK00625  83 TLMIEPSYAHIrNRGLLVLLSL 104
GntK cd02021
Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting ...
 2-33 1.06e-04

Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.


Pssm-ID: 238979 [Multi-domain]  Cd Length: 150  Bit Score: 40.31  E-value: 1.06e-04
                         10        20        30
                 ....*....|....*....|....*....|..
gi 488473141   2 IALIGAPGSGKSTVGPLLAQRLGEEFVDVDAV 33
Cdd:cd02021    2 IVVMGVSGSGKSTVGKALAERLGAPFIDGDDL 33
cyt_kin_arch TIGR02173
cytidylate kinase, putative; Proteins in this family are believed to be cytidylate kinase. ...
 1-111 2.31e-04

cytidylate kinase, putative; Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.


Pssm-ID: 274012 [Multi-domain]  Cd Length: 171  Bit Score: 39.71  E-value: 2.31e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488473141    1 MIALIGAPGSGKSTVGPLLAQRLGEEFV---DVDAVIEQAEGRDIPEiFL--------IDgesyfRKVERRETLAAIERG 69
Cdd:TIGR02173   2 IITISGPPGSGKTTVAKILAEKLSLKLIsagDIFRELAAKMGLDLIE-FLnyaeenpeID-----KKIDRRIHEIALKEK 75

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 488473141   70 GVV---SLGG---GAPADVEvgnaldrmcvVWLDVSARTAADRVGLKD 111
Cdd:TIGR02173  76 NVVlesRLAGwivREYADVK----------IWLKAPLEVRARRIAKRE 113
AAA_33 pfam13671
AAA domain; This family of domains contain only a P-loop motif, that is characteriztic of the ...
 1-45 3.36e-04

AAA domain; This family of domains contain only a P-loop motif, that is characteriztic of the AAA superfamily. Many of the proteins in this family are just short fragments so there is no Walker B motif.


Pssm-ID: 463952 [Multi-domain]  Cd Length: 143  Bit Score: 38.83  E-value: 3.36e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 488473141    1 MIALIGAPGSGKSTVGPLLAQRLGEEFVDVDAVIEQAEGRDIPEI 45
Cdd:pfam13671   1 LILLVGLPGSGKSTLARRLLEELGAVRLSSDDERKRLFGEGRPSI 45
CMPK cd02020
Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine ...
 2-29 4.58e-04

Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.


Pssm-ID: 238978 [Multi-domain]  Cd Length: 147  Bit Score: 38.62  E-value: 4.58e-04
                         10        20
                 ....*....|....*....|....*...
gi 488473141   2 IALIGAPGSGKSTVGPLLAQRLGEEFVD 29
Cdd:cd02020    2 IAIDGPAGSGKSTVAKLLAKKLGLPYLD 29
ADK cd01428
Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine ...
 2-24 1.11e-03

Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.


Pssm-ID: 238713 [Multi-domain]  Cd Length: 194  Bit Score: 37.99  E-value: 1.11e-03
                         10        20
                 ....*....|....*....|...
gi 488473141   2 IALIGAPGSGKSTVGPLLAQRLG 24
Cdd:cd01428    2 ILLLGPPGSGKGTQAERLAKKYG 24
Tmk COG0125
Thymidylate kinase [Nucleotide transport and metabolism]; Thymidylate kinase is part of the ...
 2-165 1.56e-03

Thymidylate kinase [Nucleotide transport and metabolism]; Thymidylate kinase is part of the Pathway/BioSystem: Thymidylate biosynthesis


Pssm-ID: 439895 [Multi-domain]  Cd Length: 206  Bit Score: 37.44  E-value: 1.56e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488473141   2 IALIGAPGSGKSTVGPLLAQRLGEEFVDVDAVIE---QAEGRDIPEIFLIDGESYFRKVE-------RRETLA-----AI 66
Cdd:COG0125    6 IVFEGIDGSGKSTQIKLLAEYLEARGYDVVLTREpggTPLGEAIRELLLGDNEDMSPRTElllfaadRAQHVEevirpAL 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488473141  67 ERGGVV--------SL---GGGAPADVEVGNALDRM--------CVVWLDVSARTAADRVGLKDTGRPLLGGQVHSQLVR 127
Cdd:COG0125   86 AAGKIVicdryvdsSLayqGGGRGLDLEWIRQLNRFatgglkpdLTILLDVPPEVALARARARGGELDRFESEDLEFHER 165

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|...
gi 488473141 128 LmkerRAVYQR-----PATIRVATDTLTPEQVVDVIVSELADL 165
Cdd:COG0125  166 V----REGYLElaakePERIVVIDASQSIEEVHAEIREALAEL 204
AAA_18 pfam13238
AAA domain;
2-35 3.41e-03

AAA domain;


Pssm-ID: 433052 [Multi-domain]  Cd Length: 128  Bit Score: 35.87  E-value: 3.41e-03
                          10        20        30
                  ....*....|....*....|....*....|....
gi 488473141    2 IALIGAPGSGKSTVGPLLAQRLGEEFVDVDAVIE 35
Cdd:pfam13238   1 ILITGTPGVGKTTLAKELSKRLGFGDNVRDLALE 34
AAA cd00009
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ...
 2-72 3.99e-03

The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.


Pssm-ID: 99707 [Multi-domain]  Cd Length: 151  Bit Score: 35.97  E-value: 3.99e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 488473141   2 IALIGAPGSGKSTvgplLAQRLGEEFVDVDAVIEQAEGRDIPEIFLIDGESYFRKVERRETLAAIERGGVV 72
Cdd:cd00009   22 LLLYGPPGTGKTT----LARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVL 88
AAA_28 pfam13521
AAA domain;
2-28 4.32e-03

AAA domain;


Pssm-ID: 433278 [Multi-domain]  Cd Length: 164  Bit Score: 36.09  E-value: 4.32e-03
                          10        20
                  ....*....|....*....|....*..
gi 488473141    2 IALIGAPGSGKSTVGPLLAQRLGEEFV 28
Cdd:pfam13521   2 IVITGGPSTGKTTLAEALAARFGYPVV 28
AAA smart00382
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ...
 2-118 4.79e-03

ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.


Pssm-ID: 214640 [Multi-domain]  Cd Length: 148  Bit Score: 35.81  E-value: 4.79e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488473141     2 IALIGAPGSGKSTVGPLLAQRLGEE-----FVDVDAVIEQAEGRDIPEIFLIDGESYFRKVERRETLAAIERggvvslgg 76
Cdd:smart00382   5 ILIVGPPGSGKTTLARALARELGPPgggviYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARK-------- 76

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*.
gi 488473141    77 gAPADV----EVGNALDRMCVVWLDVSARTAADRVGLKDTGRPLLG 118
Cdd:smart00382  77 -LKPDVlildEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVIL 121
COG0645 COG0645
Predicted kinase, contains AAA domain [General function prediction only];
1-44 5.25e-03

Predicted kinase, contains AAA domain [General function prediction only];


Pssm-ID: 440410 [Multi-domain]  Cd Length: 164  Bit Score: 35.66  E-value: 5.25e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....
gi 488473141   1 MIALIGAPGSGKSTVGPLLAQRLGEEFVDVDAVIEQAEGRDIPE 44
Cdd:COG0645    1 LILVCGLPGSGKSTLARALAERLGAVRLRSDVVRKRLFGAGLAP 44
PRK04182 PRK04182
cytidylate kinase; Provisional
 2-28 6.18e-03

cytidylate kinase; Provisional


Pssm-ID: 235244 [Multi-domain]  Cd Length: 180  Bit Score: 35.55  E-value: 6.18e-03
                         10        20
                 ....*....|....*....|....*..
gi 488473141   2 IALIGAPGSGKSTVGPLLAQRLGEEFV 28
Cdd:PRK04182   3 ITISGPPGSGKTTVARLLAEKLGLKHV 29
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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