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Conserved domains on  [gi|488491900|ref|WP_002535344|]
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MULTISPECIES: 50S ribosomal protein L33 [Vibrionaceae]

Protein Classification

50S ribosomal protein L33( domain architecture ID 10011480)

50S ribosomal protein L33 is a component of the large ribosomal subunit 50S

Gene Ontology:  GO:0005840|GO:0006412|GO:0003735
PubMed:  24524803|11733066

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
rpmG PRK00595
50S ribosomal protein L33; Validated
 1-53 3.53e-24

50S ribosomal protein L33; Validated


:

Pssm-ID: 179075  Cd Length: 53  Bit Score: 84.48  E-value: 3.53e-24
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|...
gi 488491900  1 MAKGIREKIRLVSSAGTGHFYTTDKNKRNMPGKFEIKKFDPVVRQHVMYKEAK 53
Cdd:PRK00595  1 AAKGMRVKIKLESTEGTGRFYTTTKNKRNTPEKLELKKYDPVLRKHVLHKETK 53
 
Name Accession Description Interval E-value
rpmG PRK00595
50S ribosomal protein L33; Validated
 1-53 3.53e-24

50S ribosomal protein L33; Validated


Pssm-ID: 179075  Cd Length: 53  Bit Score: 84.48  E-value: 3.53e-24
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|...
gi 488491900  1 MAKGIREKIRLVSSAGTGHFYTTDKNKRNMPGKFEIKKFDPVVRQHVMYKEAK 53
Cdd:PRK00595  1 AAKGMRVKIKLESTEGTGRFYTTTKNKRNTPEKLELKKYDPVLRKHVLHKETK 53
RpmG COG0267
Ribosomal protein L33 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L33 ...
 1-53 8.20e-20

Ribosomal protein L33 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L33 is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 440037  Cd Length: 52  Bit Score: 73.27  E-value: 8.20e-20
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|...
gi 488491900  1 MAkGIREKIRLVSSAGTGHFYTTDKNKRNMPGKFEIKKFDPVVRQHVMYKEAK 53
Cdd:COG0267   1 MA-GMREKITLACTECKGRNYTTTKNKRNTPERLELKKYCPKCRKHTLHKETK 52
rpmG_bact TIGR01023
ribosomal protein L33, bacterial type; This model describes bacterial ribosomal protein L33 ...
 2-53 1.54e-18

ribosomal protein L33, bacterial type; This model describes bacterial ribosomal protein L33 and its chloroplast and mitochondrial equivalents. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 273399  Cd Length: 54  Bit Score: 70.17  E-value: 1.54e-18
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|..
gi 488491900   2 AKGIREKIRLVSSAGTGHFYTTDKNKRNMPGKFEIKKFDPVVRQHVMYKEAK 53
Cdd:TIGR01023  3 KKGARELIRLVCTACTGINYTTTKNRRNKPEKLELRKYCPVCRKHVLHKEAK 54
Ribosomal_L33 pfam00471
Ribosomal protein L33;
8-53 5.05e-18

Ribosomal protein L33;


Pssm-ID: 425701  Cd Length: 46  Bit Score: 68.61  E-value: 5.05e-18
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*.
gi 488491900   8 KIRLVSSAGTGHFYTTDKNKRNMPGKFEIKKFDPVVRQHVMYKEAK 53
Cdd:pfam00471  1 KITLACTECKGRNYTTTKNKKNTPERLELKKYCPKCRKHTLHKETK 46
 
Name Accession Description Interval E-value
rpmG PRK00595
50S ribosomal protein L33; Validated
 1-53 3.53e-24

50S ribosomal protein L33; Validated


Pssm-ID: 179075  Cd Length: 53  Bit Score: 84.48  E-value: 3.53e-24
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|...
gi 488491900  1 MAKGIREKIRLVSSAGTGHFYTTDKNKRNMPGKFEIKKFDPVVRQHVMYKEAK 53
Cdd:PRK00595  1 AAKGMRVKIKLESTEGTGRFYTTTKNKRNTPEKLELKKYDPVLRKHVLHKETK 53
RpmG COG0267
Ribosomal protein L33 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L33 ...
 1-53 8.20e-20

Ribosomal protein L33 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L33 is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 440037  Cd Length: 52  Bit Score: 73.27  E-value: 8.20e-20
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|...
gi 488491900  1 MAkGIREKIRLVSSAGTGHFYTTDKNKRNMPGKFEIKKFDPVVRQHVMYKEAK 53
Cdd:COG0267   1 MA-GMREKITLACTECKGRNYTTTKNKRNTPERLELKKYCPKCRKHTLHKETK 52
rpmG_bact TIGR01023
ribosomal protein L33, bacterial type; This model describes bacterial ribosomal protein L33 ...
 2-53 1.54e-18

ribosomal protein L33, bacterial type; This model describes bacterial ribosomal protein L33 and its chloroplast and mitochondrial equivalents. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 273399  Cd Length: 54  Bit Score: 70.17  E-value: 1.54e-18
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|..
gi 488491900   2 AKGIREKIRLVSSAGTGHFYTTDKNKRNMPGKFEIKKFDPVVRQHVMYKEAK 53
Cdd:TIGR01023  3 KKGARELIRLVCTACTGINYTTTKNRRNKPEKLELRKYCPVCRKHVLHKEAK 54
Ribosomal_L33 pfam00471
Ribosomal protein L33;
8-53 5.05e-18

Ribosomal protein L33;


Pssm-ID: 425701  Cd Length: 46  Bit Score: 68.61  E-value: 5.05e-18
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*.
gi 488491900   8 KIRLVSSAGTGHFYTTDKNKRNMPGKFEIKKFDPVVRQHVMYKEAK 53
Cdd:pfam00471  1 KITLACTECKGRNYTTTKNKKNTPERLELKKYCPKCRKHTLHKETK 46
rpmG PRK00504
50S ribosomal protein L33; Validated
 4-53 7.62e-07

50S ribosomal protein L33; Validated


Pssm-ID: 234783  Cd Length: 50  Bit Score: 40.67  E-value: 7.62e-07
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|
gi 488491900  4 GIREKIRLVSSAGTGHFYTTDKNKRNMPGKFEIKKFDPVVRQHVMYKEAK 53
Cdd:PRK00504  1 MMRKKITLACTECKSRNYTTTKNKKNTPERLELKKFCPRCNKHTLHKETK 50
rpl33 CHL00104
ribosomal protein L33
 21-53 1.32e-06

ribosomal protein L33


Pssm-ID: 177033  Cd Length: 66  Bit Score: 40.34  E-value: 1.32e-06
                        10        20        30
                ....*....|....*....|....*....|...
gi 488491900 21 YTTDKNKRNMPGKFEIKKFDPVVRQHVMYKEAK 53
Cdd:CHL00104 33 YITQKNRHNTPNRLELKKFCPYCYKHTIHKEIK 65
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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