|
Name |
Accession |
Description |
Interval |
E-value |
| PRK15100 |
PRK15100 |
cystine ABC transporter permease; |
2-221 |
3.19e-132 |
|
cystine ABC transporter permease;
Pssm-ID: 185055 [Multi-domain] Cd Length: 220 Bit Score: 370.62 E-value: 3.19e-132
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488614755 2 IEESLQLALDSAPFLLKGAYYTVFLSLGGMFFGLLLGFGLALMRLSRLKLVNWIARIYVSFFRGTPLLVQLFVIYYGLPE 81
Cdd:PRK15100 1 MQESIQLVIDSAPFLLKGAGYTLQLSIGGMFFGLLLGFILALMRLSPIWPVRWLARFYVSIFRGTPLIAQLFMIYYGLPQ 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488614755 82 LGIQLEPLSAALIGFSLNMAAYACEILRAAISSVERGQWEAAASIGMTRWQTMRRAILPQAARTALPPLGNSFISLVKDT 161
Cdd:PRK15100 81 FGIELDPIPAAMIGLSLNTAAYAAETLRAAISSIDKGQWEAAASIGMTRWQTLRRAILPQAARTALPPLSNSFISLVKDT 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 488614755 162 ALAATIQVPELFRQAQLITARTFEIFTMYLAAALIYWILATALSHLQNKLEARVNRHDLE 221
Cdd:PRK15100 161 SLAATIQVPELFRQAQLITSRTLEVFTMYLAASLIYWIMATVLSALQNRFENQLNRQERE 220
|
|
| HisM |
COG0765 |
ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]; ... |
5-219 |
2.12e-88 |
|
ABC-type amino acid transport system, permease component [Amino acid transport and metabolism];
Pssm-ID: 440528 [Multi-domain] Cd Length: 218 Bit Score: 259.62 E-value: 2.12e-88
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488614755 5 SLQLALDSAPFLLKGAYYTVFLSLGGMFFGLLLGFGLALMRLSRLKLVNWIARIYVSFFRGTPLLVQLFVIYYGLPELGI 84
Cdd:COG0765 4 DFSVLLDYLPLLLEGLLVTLLLTVLAIVLGLVLGLLLALARLSPNPVLRWLATAYVEFFRGTPLLVQLFFIYFGLPLLGI 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488614755 85 QLEPLSAALIGFSLNMAAYACEILRAAISSVERGQWEAAASIGMTRWQTMRRAILPQAARTALPPLGNSFISLVKDTALA 164
Cdd:COG0765 84 DLSPFVAAVIALTLNSAAYLAEIVRAGIQSVPKGQWEAARALGLSRWQTMRRIILPQALRIILPPLGNEFISLLKDTSLV 163
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 488614755 165 ATIQVPELFRQAQLITARTFEIFTMYLAAALIYWILATALSHLQNKLEARVNRHD 219
Cdd:COG0765 164 SVIGVPELTRAAQQIASRTFRPFEVYLVAALIYLVLTLPLSLLARRLERRLARGR 218
|
|
| ectoine_ehuC |
TIGR03004 |
ectoine/hydroxyectoine ABC transporter, permease protein EhuC; Members of this family are ... |
14-217 |
2.15e-42 |
|
ectoine/hydroxyectoine ABC transporter, permease protein EhuC; Members of this family are presumed to act as permease subunits of ectoine ABC transporters. Operons containing this gene also contain the other genes of the ABC transporter and typically are found next to either ectoine utilization or ectoine biosynthesis operons. Permease subunits EhuC and EhuD are homologous.
Pssm-ID: 132049 [Multi-domain] Cd Length: 214 Bit Score: 142.68 E-value: 2.15e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488614755 14 PFLLKGAYYTVFLSLGGMFFGLLLGFGLALMRLSRLKLVNWIARIYVSFFRGTPLLVQLFVIYYGLPELGIQLEPLSAAL 93
Cdd:TIGR03004 5 PLLLQGAWVTMQITLAGSVLATVLAFFAGLGRVSGGPILRTVALCYIEVFRGTSLLVQLFWFYFVLPLIGLSLDPVTTGV 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488614755 94 IGFSLNMAAYACEILRAAISSVERGQWEAAASIGMTRWQTMRRAILPQAARTALPPLGNSFISLVKDTALAATIQVPELF 173
Cdd:TIGR03004 85 MVLGLHAGAYGAEIVRGALSSVSVQQLEACRALNFTRFQTLRRISLPQALVEMMPAFGNLAIELLKLTSLVSLISLADLT 164
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 488614755 174 RQAQLITARTFEIFTMYLAAALIYWILATALSHLQNKLEARVNR 217
Cdd:TIGR03004 165 FAAQSIRNLTLDTLSIFAITLLCYFVMALIIMLIMRVLERVVRR 208
|
|
| TM_PBP2 |
cd06261 |
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ... |
42-205 |
1.66e-19 |
|
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.
Pssm-ID: 119394 [Multi-domain] Cd Length: 190 Bit Score: 82.33 E-value: 1.66e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488614755 42 ALMRLSRLKLVNWIARIYVSFFRGTPLLVQLFVIYYGLPELG---IQLEPLSAALIGFSLNMAAYACEILRAAISSVERG 118
Cdd:cd06261 23 GIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLgwgILPGLGLPALILALLLIAPFARLIRRAALESIPKD 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488614755 119 QWEAAASIGMTRWQTMRRAILPQAARTALPPLGNSFISLVKDTALAATIQVPELFRQAQLITARTFEIFTMYLAAALIYW 198
Cdd:cd06261 103 LVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGEAPGPGTGLLLIFAILFPGDLGVAAAVA 182
|
....*..
gi 488614755 199 ILATALS 205
Cdd:cd06261 183 LILLLLS 189
|
|
| BPD_transp_1 |
pfam00528 |
Binding-protein-dependent transport system inner membrane component; The alignments cover the ... |
42-217 |
1.18e-16 |
|
Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.
Pssm-ID: 334128 [Multi-domain] Cd Length: 183 Bit Score: 74.64 E-value: 1.18e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488614755 42 ALMRLSRLKLVNWIARIYVSFFRGTPLLVQLFVIYYGLPELGIQLEPLsAALIGFSLNMAAYACEILRAAISSVERGQWE 121
Cdd:pfam00528 6 IIAALRRGRRLDRLLRPLIDLLQALPSFVLAILLVVIAILSILGHGIL-PAIILALLGWAGYARLIRRAALRSLPSDLVE 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488614755 122 AAASIGMTRWQTMRRAILPQAARTALPPLGNSFISLVKDTALAATI----QVPELFRQAQLITaRTFEIFTMYLAAALIY 197
Cdd:pfam00528 85 AARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLgswpGLGLLLIEAILGY-DYPEIQGPVLAAALIL 163
|
170 180
....*....|....*....|
gi 488614755 198 WILATALSHLQNKLEARVNR 217
Cdd:pfam00528 164 LLLNLLVDILQRLLDPRVRK 183
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PRK15100 |
PRK15100 |
cystine ABC transporter permease; |
2-221 |
3.19e-132 |
|
cystine ABC transporter permease;
Pssm-ID: 185055 [Multi-domain] Cd Length: 220 Bit Score: 370.62 E-value: 3.19e-132
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488614755 2 IEESLQLALDSAPFLLKGAYYTVFLSLGGMFFGLLLGFGLALMRLSRLKLVNWIARIYVSFFRGTPLLVQLFVIYYGLPE 81
Cdd:PRK15100 1 MQESIQLVIDSAPFLLKGAGYTLQLSIGGMFFGLLLGFILALMRLSPIWPVRWLARFYVSIFRGTPLIAQLFMIYYGLPQ 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488614755 82 LGIQLEPLSAALIGFSLNMAAYACEILRAAISSVERGQWEAAASIGMTRWQTMRRAILPQAARTALPPLGNSFISLVKDT 161
Cdd:PRK15100 81 FGIELDPIPAAMIGLSLNTAAYAAETLRAAISSIDKGQWEAAASIGMTRWQTLRRAILPQAARTALPPLSNSFISLVKDT 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 488614755 162 ALAATIQVPELFRQAQLITARTFEIFTMYLAAALIYWILATALSHLQNKLEARVNRHDLE 221
Cdd:PRK15100 161 SLAATIQVPELFRQAQLITSRTLEVFTMYLAASLIYWIMATVLSALQNRFENQLNRQERE 220
|
|
| HisM |
COG0765 |
ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]; ... |
5-219 |
2.12e-88 |
|
ABC-type amino acid transport system, permease component [Amino acid transport and metabolism];
Pssm-ID: 440528 [Multi-domain] Cd Length: 218 Bit Score: 259.62 E-value: 2.12e-88
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488614755 5 SLQLALDSAPFLLKGAYYTVFLSLGGMFFGLLLGFGLALMRLSRLKLVNWIARIYVSFFRGTPLLVQLFVIYYGLPELGI 84
Cdd:COG0765 4 DFSVLLDYLPLLLEGLLVTLLLTVLAIVLGLVLGLLLALARLSPNPVLRWLATAYVEFFRGTPLLVQLFFIYFGLPLLGI 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488614755 85 QLEPLSAALIGFSLNMAAYACEILRAAISSVERGQWEAAASIGMTRWQTMRRAILPQAARTALPPLGNSFISLVKDTALA 164
Cdd:COG0765 84 DLSPFVAAVIALTLNSAAYLAEIVRAGIQSVPKGQWEAARALGLSRWQTMRRIILPQALRIILPPLGNEFISLLKDTSLV 163
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 488614755 165 ATIQVPELFRQAQLITARTFEIFTMYLAAALIYWILATALSHLQNKLEARVNRHD 219
Cdd:COG0765 164 SVIGVPELTRAAQQIASRTFRPFEVYLVAALIYLVLTLPLSLLARRLERRLARGR 218
|
|
| ArtM |
COG4160 |
ABC-type arginine/histidine transport system, permease component [Amino acid transport and ... |
5-218 |
2.20e-65 |
|
ABC-type arginine/histidine transport system, permease component [Amino acid transport and metabolism];
Pssm-ID: 443325 [Multi-domain] Cd Length: 229 Bit Score: 201.48 E-value: 2.20e-65
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488614755 5 SLQLALDSAPFLLKGAYYTVFLSLGGMFFGLLLGFGLALMRLSRLKLVNWIARIYVSFFRGTPLLVQLFVIYYGLPEL-G 83
Cdd:COG4160 2 DLDLLFEYLPLLLSGLPLTLQLLALSLLLGFLLAVPLALARASGNRLLRWPARGYIYVFRGTPLLVQLFLIYYGLGQFeW 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488614755 84 IQL--------EPLSAALIGFSLNMAAYACEILRAAISSVERGQWEAAASIGMTRWQTMRRAILPQAARTALPPLGNSFI 155
Cdd:COG4160 82 VREswlwpllrDPWFCALLALTLNTAAYTAEIFRGAIRAVPKGEIEAARALGMSRWQTFRRIILPSALRRALPAYSNEVI 161
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 488614755 156 SLVKDTALAATIQVPELFRQAQLITARTFEIFTMYLAAALIYWILATALSHLQNKLEARVNRH 218
Cdd:COG4160 162 LMLKATALASTITVMDLTGVARRIYSRTYDPFEPFLIAALIYLVITFLLTRLFRLLERRLLRH 224
|
|
| ArtQ |
COG4215 |
ABC-type arginine transport system, permease component [Amino acid transport and metabolism]; |
16-218 |
1.10e-51 |
|
ABC-type arginine transport system, permease component [Amino acid transport and metabolism];
Pssm-ID: 443361 [Multi-domain] Cd Length: 238 Bit Score: 166.84 E-value: 1.10e-51
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488614755 16 LLKGAYYTVFLSLGGMFFGLLLGFGLALMRLSRLKLVNWIARIYVSFFRGTPLLVQLFVIYYGLPEL------------G 83
Cdd:COG4215 18 LLAGALVTLELALLSLLLGLVLGLLGALAKLSGNRPLRWLATGYTTVVRGVPDLLLILLLYFGGQILlnaladlfgydgF 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488614755 84 IQLEPLSAALIGFSLNMAAYACEILRAAISSVERGQWEAAASIGMTRWQTMRRAILPQAARTALPPLGNSFISLVKDTAL 163
Cdd:COG4215 98 IEINPFVAGVLALGFVFGAYATEVFRGAFLAVPKGQIEAARAYGMSRWQVFRRILLPQMWRYALPGLGNNWLVLLKDTAL 177
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 488614755 164 AATIQVPELFRQAQLITARTFEIFTMYLAAALIYWILATALSHLQNKLEARVNRH 218
Cdd:COG4215 178 VSVIGLVDLVRQAQEAAGSTREPFTFYLAAALIYLALTTVSELVLARLERRASRG 232
|
|
| ectoine_ehuC |
TIGR03004 |
ectoine/hydroxyectoine ABC transporter, permease protein EhuC; Members of this family are ... |
14-217 |
2.15e-42 |
|
ectoine/hydroxyectoine ABC transporter, permease protein EhuC; Members of this family are presumed to act as permease subunits of ectoine ABC transporters. Operons containing this gene also contain the other genes of the ABC transporter and typically are found next to either ectoine utilization or ectoine biosynthesis operons. Permease subunits EhuC and EhuD are homologous.
Pssm-ID: 132049 [Multi-domain] Cd Length: 214 Bit Score: 142.68 E-value: 2.15e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488614755 14 PFLLKGAYYTVFLSLGGMFFGLLLGFGLALMRLSRLKLVNWIARIYVSFFRGTPLLVQLFVIYYGLPELGIQLEPLSAAL 93
Cdd:TIGR03004 5 PLLLQGAWVTMQITLAGSVLATVLAFFAGLGRVSGGPILRTVALCYIEVFRGTSLLVQLFWFYFVLPLIGLSLDPVTTGV 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488614755 94 IGFSLNMAAYACEILRAAISSVERGQWEAAASIGMTRWQTMRRAILPQAARTALPPLGNSFISLVKDTALAATIQVPELF 173
Cdd:TIGR03004 85 MVLGLHAGAYGAEIVRGALSSVSVQQLEACRALNFTRFQTLRRISLPQALVEMMPAFGNLAIELLKLTSLVSLISLADLT 164
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 488614755 174 RQAQLITARTFEIFTMYLAAALIYWILATALSHLQNKLEARVNR 217
Cdd:TIGR03004 165 FAAQSIRNLTLDTLSIFAITLLCYFVMALIIMLIMRVLERVVRR 208
|
|
| ectoine_ehuD |
TIGR03003 |
ectoine/hydroxyectoine ABC transporter, permease protein EhuD; Members of this family are ... |
14-214 |
4.74e-41 |
|
ectoine/hydroxyectoine ABC transporter, permease protein EhuD; Members of this family are presumed to act as permease subunits of ectoine ABC transporters. Operons containing this gene also contain the other genes of the ABC transporter and typically are found next to either ectoine utilization or ectoine biosynthesis operons.
Pssm-ID: 132048 [Multi-domain] Cd Length: 212 Bit Score: 138.83 E-value: 4.74e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488614755 14 PFLLKGAYYTVFLSLGGMFFGLLLGFGLALMRLSRLKLVNWIARIYVSFFRGTPLLVQLFVIYYGLPELGIQLEPLSAAL 93
Cdd:TIGR03003 11 PTLIEGLKITILATALGFAIAAVLGLVFAILRRSAPTPISWPTSFVVEFIRGTPLLVQLYFLYYVLPDIGIRLPALVAGV 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488614755 94 IGFSLNMAAYACEILRAAISSVERGQWEAAASIGMTRWQTMRRAILPQAARTALPPLGNSFISLVKDTALAATIQVPELF 173
Cdd:TIGR03003 91 LGLGLHYATYAAEVYRAGIEAVPRGQWEAATALNLTARQTYRHIILPQAIPPIIPALGNYLVAMFKETPVLSAITVLELM 170
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 488614755 174 RQAQLITARTFEIFTMYLAAALIYWILATALSHLQNKLEAR 214
Cdd:TIGR03003 171 NQAKSIGNSTFRYLEPMTLVGVFFLILSIISVFFLRRLEAR 211
|
|
| glnP |
PRK09494 |
glutamine ABC transporter permease protein; Reviewed |
11-215 |
1.94e-40 |
|
glutamine ABC transporter permease protein; Reviewed
Pssm-ID: 181907 [Multi-domain] Cd Length: 219 Bit Score: 137.49 E-value: 1.94e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488614755 11 DSAPFLLKGAYYTVFLSLGGMFFGLLLGFGLALMRLSRLKLVNWIARIYVSFFRGTPLLVQLFVIYYGLPEL--GIQLEP 88
Cdd:PRK09494 10 PAIPLLLEGAKMTLWISVLGLAGGLVIGLLAGFARAYGGWIANHIALVFIELIRGTPIVVQVMFIYFALPMAfnDLRIDP 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488614755 89 LSAALIGFSLNMAAYACEILRAAISSVERGQWEAAASIGMTRWQTMRRAILPQAARTALPPLGNSFISLVKDTALAATIQ 168
Cdd:PRK09494 90 FTAAVVTIMINSGAYIAEITRGAVLSIHKGFREAGLALGLSRRETLRYVIGPLALRRMLPPLGNQWIISIKDTSLFIVIG 169
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 488614755 169 VPELFRQAQLITARTFEIFTMYLAAALIYWILATALSHLQNKLEARV 215
Cdd:PRK09494 170 VAELTRQGQEIIAGNFRALEIWSAVAVIYLIITLVLSFILRRLERRM 216
|
|
| PRK11123 |
PRK11123 |
arginine ABC transporter permease ArtQ; |
42-217 |
4.05e-35 |
|
arginine ABC transporter permease ArtQ;
Pssm-ID: 182979 [Multi-domain] Cd Length: 238 Bit Score: 124.40 E-value: 4.05e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488614755 42 ALMRLSRLKLVNWIARIYVSFFRGTP-LLVQLFvIYYGLPEL------------------------GIQLEPLSAALIGF 96
Cdd:PRK11123 33 AVWESAKWRPVAWPGTALVTLLRGLPeILVVLF-IYFGSSQLlltlsdgftlnlgfvqipvqmdieNFEVSPFLCGVIAL 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488614755 97 SLNMAAYACEILRAAISSVERGQWEAAASIGMTRWQTMRRAILPQAARTALPPLGNSFISLVKDTALAATIQVPELFRQA 176
Cdd:PRK11123 112 SLLYAAYASQTLRGALKAVPVGQWESGQALGLSKSAIFFRLVMPQMWRHALPGLGNQWLVLLKDTALVSLISVNDLMLQT 191
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 488614755 177 QLITARTFEIFTMYLAAALIYWILATALSHLQNKLEARVNR 217
Cdd:PRK11123 192 KSIATRTQEPFTWYIIAAAIYLVITLISQYILKRIELRATR 232
|
|
| PRK15107 |
PRK15107 |
glutamate/aspartate ABC transporter permease GltK; |
12-214 |
1.81e-32 |
|
glutamate/aspartate ABC transporter permease GltK;
Pssm-ID: 185062 [Multi-domain] Cd Length: 224 Bit Score: 117.24 E-value: 1.81e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488614755 12 SAPFLLKGAYYTVFLSLGGMFFGLLLGFGLALMRLSRLKLVNWIARIYVSFFRGTPLLVQLFVIYYGLPELGIQLEPLS- 90
Cdd:PRK15107 12 SLPYLLDGLVITLKITVTAVVIGILWGTILAVMRLSSFKPVAWFAKAYVNVFRSIPLVMVLLWFYLIVPGFLQNVLGLSp 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488614755 91 -------AALIGFSLNMAAYACEILRAAISSVERGQWEAAASIGMTRWQTMRRAILPQAARTALPPLGNSFISLVKDTAL 163
Cdd:PRK15107 92 ktdirliSAMVAFSMFEAAYYSEIIRAGIQSISRGQSSAALALGMTHWQSMKLIILPQAFRAMVPLLLTQGIVLFQDTSL 171
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 488614755 164 AATIQVPELFRQAQLITARTFEIFTMYLAAALIYWILATALSHLQNKLEAR 214
Cdd:PRK15107 172 VYVLSLADFFRTASTIGERDGTQVEMILFAGFVYFVISLSASLLVSYLKKR 222
|
|
| PRK15069 |
PRK15069 |
histidine ABC transporter permease HisM; |
42-218 |
1.14e-31 |
|
histidine ABC transporter permease HisM;
Pssm-ID: 185029 [Multi-domain] Cd Length: 234 Bit Score: 115.53 E-value: 1.14e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488614755 42 ALMRLSRLKLVNWIARIYVSFFRGTPLLVQLFVIYYGLPELGIQLE----------PLSAALIGFSLNMAAYACEILRAA 111
Cdd:PRK15069 45 AIARVSSNKWIRFPVWLYTYVFRGTPLYVQLLVFYTGMYSLEIVRGtdlldaffrsGLNCTILAFTLNTCAYTTEIFAGA 124
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488614755 112 ISSVERGQWEAAASIGMTRWQTMRRAILPQAARTALPPLGNSFISLVKDTALAATIQVPELFRQAQLITARTFEIFTMYL 191
Cdd:PRK15069 125 IRSVPHGEIEAARAYGMSTFKLYRRIILPSALRRALPAYSNEVILMLHATTLAFTATVPDILKIARDINSATYQPFQAFG 204
|
170 180
....*....|....*....|....*..
gi 488614755 192 AAALIYWILATALSHLQNKLEARVNRH 218
Cdd:PRK15069 205 IAAVLYLIISFVLISLFRRAERRWLAH 231
|
|
| artM |
PRK11122 |
arginine ABC transporter permease ArtM; |
48-215 |
3.07e-30 |
|
arginine ABC transporter permease ArtM;
Pssm-ID: 182978 [Multi-domain] Cd Length: 222 Bit Score: 111.20 E-value: 3.07e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488614755 48 RLKLVNWIARIYVSFFRGTPLLVQLFVIYYG---------LPELGIQL-EPLSAALIGFSLNMAAYACEILRAAISSVER 117
Cdd:PRK11122 40 KTPVLVWLVRGYITLFTGTPLLVQIFLIYYGpgqfpwlqeYPWLWHLLsQPWLCAMLALALNSAAYSTQLFYGAVRAIPE 119
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488614755 118 GQWEAAASIGMTRWQTMrRAILPQAARTALPPLGNSFISLVKDTALAATIQVPELFRQAQLITARTFEIfTMYLAAALIY 197
Cdd:PRK11122 120 GQWQSCAALGMSKKQTL-RILLPYAFKRALSSYSNEVVLVFKSTSLAYTITLMDVMGYSQLLYGRTYDV-MVFGAAGIIY 197
|
170
....*....|....*...
gi 488614755 198 WILATALSHLQNKLEARV 215
Cdd:PRK11122 198 LVVNGLLTLLMRLIERKA 215
|
|
| HEQRo_perm_3TM |
TIGR01726 |
amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family; This ... |
14-110 |
9.13e-28 |
|
amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family; This model represents one of several classes of multiple membrane spanning regions found immediately N-terminal to the domain described by pfam00528, binding-protein-dependent transport systems inner membrane component. The region covered by this model generally is predicted to contain three transmembrane helices. Substrate specificities attributed to members of this family include histidine, arginine, glutamine, glutamate, and (in Agrobacterium) the opines octopine and nopaline. [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 130787 [Multi-domain] Cd Length: 99 Bit Score: 101.07 E-value: 9.13e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488614755 14 PFLLKGAYYTVFLSLGGMFFGLLLGFGLALMRLSRLKLVNWIARIYVSFFRGTPLLVQLFVIYYGLPELGIQLEPLSAAL 93
Cdd:TIGR01726 3 PFLLKGLLLTLLLSVLSILLGLVLGLLLALLRLSGNRPLRWIATVYVELFRGTPLLVQLFFIYFGLPLIGIRLSPLTAAV 82
|
90
....*....|....*..
gi 488614755 94 IGFSLNMAAYACEILRA 110
Cdd:TIGR01726 83 IALTLFYGAYLAEIFRG 99
|
|
| BatB |
COG4597 |
ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]; ... |
65-173 |
1.92e-22 |
|
ABC-type amino acid transport system, permease component [Amino acid transport and metabolism];
Pssm-ID: 443651 [Multi-domain] Cd Length: 397 Bit Score: 93.67 E-value: 1.92e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488614755 65 GTPLLVQL---FVIYYGLPEL-------GIQLEP-LSAALIGFSLNMAAYACEILRAAISSVERGQWEAAASIGMTRWQT 133
Cdd:COG4597 230 GLPLLAFLllgAPLSLDYPELkgfnfrgGLTLSPeFVALLLALSLYTAAFIAEIVRAGIQAVSKGQTEAARALGLRPGQT 309
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 488614755 134 MRRAILPQAARTALPPLGNSFISLVKDTALAATIQVPELF 173
Cdd:COG4597 310 LRLVVLPQALRVIIPPLTSQYLNLTKNSSLAVAIGYPDLV 349
|
|
| PRK15135 |
PRK15135 |
histidine ABC transporter permease HisQ; |
16-202 |
8.58e-21 |
|
histidine ABC transporter permease HisQ;
Pssm-ID: 185089 [Multi-domain] Cd Length: 228 Bit Score: 86.77 E-value: 8.58e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488614755 16 LLKGAYYTVFLSLGGMFFGLLLGFGLALMRLSRLKLVNWIARIYVSFFRGTPLLVQLFVIYYGLP--------ELG---I 84
Cdd:PRK15135 9 ILQGALVTLELALSSVVLAVIIGLIGAGGKLSQNRLLGLIFEGYTTLIRGVPDLVLMLLIFYGLQialnsvteALGvgqI 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488614755 85 QLEPLSAALIGFSLNMAAYACEILRAAISSVERGQWEAAASIGMTRWQTMRRAILPQAARTALPPLGNSFISLVKDTALA 164
Cdd:PRK15135 89 DIDPMVAGIITLGFIYGAYFTETFRGAFMAVPKGHIEAATAFGFTRGQVFRRIMFPAMMRYALPGIGNNWQVILKATALV 168
|
170 180 190
....*....|....*....|....*....|....*...
gi 488614755 165 ATIQVPELFRQAQLITARTFEIFTMYLAAALIYWILAT 202
Cdd:PRK15135 169 SLLGLEDVVKATQLAGKSTWEPFYFAIVCGVIYLVFTT 206
|
|
| TM_PBP2 |
cd06261 |
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ... |
42-205 |
1.66e-19 |
|
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.
Pssm-ID: 119394 [Multi-domain] Cd Length: 190 Bit Score: 82.33 E-value: 1.66e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488614755 42 ALMRLSRLKLVNWIARIYVSFFRGTPLLVQLFVIYYGLPELG---IQLEPLSAALIGFSLNMAAYACEILRAAISSVERG 118
Cdd:cd06261 23 GIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLgwgILPGLGLPALILALLLIAPFARLIRRAALESIPKD 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488614755 119 QWEAAASIGMTRWQTMRRAILPQAARTALPPLGNSFISLVKDTALAATIQVPELFRQAQLITARTFEIFTMYLAAALIYW 198
Cdd:cd06261 103 LVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGEAPGPGTGLLLIFAILFPGDLGVAAAVA 182
|
....*..
gi 488614755 199 ILATALS 205
Cdd:cd06261 183 LILLLLS 189
|
|
| BPD_transp_1 |
pfam00528 |
Binding-protein-dependent transport system inner membrane component; The alignments cover the ... |
42-217 |
1.18e-16 |
|
Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.
Pssm-ID: 334128 [Multi-domain] Cd Length: 183 Bit Score: 74.64 E-value: 1.18e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488614755 42 ALMRLSRLKLVNWIARIYVSFFRGTPLLVQLFVIYYGLPELGIQLEPLsAALIGFSLNMAAYACEILRAAISSVERGQWE 121
Cdd:pfam00528 6 IIAALRRGRRLDRLLRPLIDLLQALPSFVLAILLVVIAILSILGHGIL-PAIILALLGWAGYARLIRRAALRSLPSDLVE 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488614755 122 AAASIGMTRWQTMRRAILPQAARTALPPLGNSFISLVKDTALAATI----QVPELFRQAQLITaRTFEIFTMYLAAALIY 197
Cdd:pfam00528 85 AARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLgswpGLGLLLIEAILGY-DYPEIQGPVLAAALIL 163
|
170 180
....*....|....*....|
gi 488614755 198 WILATALSHLQNKLEARVNR 217
Cdd:pfam00528 164 LLLNLLVDILQRLLDPRVRK 183
|
|
| MetP |
COG2011 |
ABC-type methionine transport system, permease component [Amino acid transport and metabolism]; ... |
50-167 |
1.66e-04 |
|
ABC-type methionine transport system, permease component [Amino acid transport and metabolism];
Pssm-ID: 441614 Cd Length: 220 Bit Score: 41.19 E-value: 1.66e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488614755 50 KLVNWIARIYVSFFRGTPllvqlFVIyyglpeLGIQLEPLSAALIG---------FSLNMAA---YAcEILRAAISSVER 117
Cdd:COG2011 53 PVLYRVLGVIVNIFRSIP-----FII------LLVALIPLTRLIVGtsigttaaiVPLTIAAipfFA-RLVENALREVDP 120
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 488614755 118 GQWEAAASIGMTRWQTMRRAILPQaartALPPLGNS----FISLVKDTALAATI 167
Cdd:COG2011 121 GVIEAAQAMGASPWQIIFKVLLPE----ALPSLILGltvtLISLIGYSAMAGAV 170
|
|
| FbpB |
COG1178 |
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism]; |
59-144 |
2.59e-04 |
|
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
Pssm-ID: 440791 [Multi-domain] Cd Length: 538 Bit Score: 41.30 E-value: 2.59e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488614755 59 YVSFFRGTPLLVQLFVIYYGLPELGIqlEPLSAALIGFSLNMAAYACEILRAAISSVERGQWEAAASIGMTRWQTMRRAI 138
Cdd:COG1178 111 WIALFGPNGLLNTLLRALFGLEPPDI--YGLGGIILVLVLFNYPYVYLLLRAALRSIDASLEEAARSLGASPWRAFRRVT 188
|
....*.
gi 488614755 139 LPQAAR 144
Cdd:COG1178 189 LPLLRP 194
|
|
| PhnE |
COG3639 |
ABC-type phosphate/phosphonate transport system, permease component [Inorganic ion transport ... |
45-143 |
1.60e-03 |
|
ABC-type phosphate/phosphonate transport system, permease component [Inorganic ion transport and metabolism];
Pssm-ID: 442856 [Multi-domain] Cd Length: 244 Bit Score: 38.52 E-value: 1.60e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488614755 45 RLSRLKLVNWIARIYVSFFRGTPLLV--QLFVIYYGLPELgiqleplsAALIGFSLNMAAYACEILRAAISSVERGQWEA 122
Cdd:COG3639 81 NLAPNPWVRLLARRLLNVLRAIPELVwaLIFVAAVGLGPF--------AGVLALAIHTIGFLGKLFAEAIEEIDPGPVEA 152
|
90 100
....*....|....*....|.
gi 488614755 123 AASIGMTRWQTMRRAILPQAA 143
Cdd:COG3639 153 LRATGASRLQVIRYGVLPQVL 173
|
|
| CysU |
COG0555 |
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]; ... |
107-147 |
4.77e-03 |
|
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism];
Pssm-ID: 440321 [Multi-domain] Cd Length: 268 Bit Score: 37.04 E-value: 4.77e-03
10 20 30 40
....*....|....*....|....*....|....*....|.
gi 488614755 107 ILRAAISSVERGQWEAAASIGMTRWQTMRRAILPQAARTAL 147
Cdd:COG0555 154 TVQPVLEELDPELEEAAATLGASRWQTFRRVILPLLLPALL 194
|
|
| |
