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Conserved domains on  [gi|488618058|ref|WP_002554907|]
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MULTISPECIES: DUF4845 domain-containing protein [Pseudomonas]

Protein Classification

DUF4845 domain-containing protein( domain architecture ID 11241188)

DUF4845 domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF4845 pfam16137
Domain of unknown function (DUF4845); This family consists of uncharacterized proteins around ...
 31-116 4.73e-27

Domain of unknown function (DUF4845); This family consists of uncharacterized proteins around 120 residues in length and is mainly found in various Pseudomonas species. Distant homology analysis suggests that proteins from this family are related to pilin type IV proteins from the Bundlin (PF05307) family, this prediction is however not confirmed by any experimental evidence


:

Pssm-ID: 435163  Cd Length: 85  Bit Score: 95.67  E-value: 4.73e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488618058   31 KLVPHYLDYMTMKKIIETVDTNQALDITTVDDFYGYVGKNMQVNSIRDIDLNKaLKVTVENNAFKAHLNYEQREPWFQNI 110
Cdd:pfam16137   1 KLVPAYLEYFSVKKALKSLANDPGLAGMSVAEIRSSFDKRADINNIRSIKGED-LKIEKSGGGVVVSVDYEVRIPLFGNV 79


                  ....*.
gi 488618058  111 DLVMKF 116
Cdd:pfam16137  80 DLVIDF 85
 
Name Accession Description Interval E-value
DUF4845 pfam16137
Domain of unknown function (DUF4845); This family consists of uncharacterized proteins around ...
 31-116 4.73e-27

Domain of unknown function (DUF4845); This family consists of uncharacterized proteins around 120 residues in length and is mainly found in various Pseudomonas species. Distant homology analysis suggests that proteins from this family are related to pilin type IV proteins from the Bundlin (PF05307) family, this prediction is however not confirmed by any experimental evidence


Pssm-ID: 435163  Cd Length: 85  Bit Score: 95.67  E-value: 4.73e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488618058   31 KLVPHYLDYMTMKKIIETVDTNQALDITTVDDFYGYVGKNMQVNSIRDIDLNKaLKVTVENNAFKAHLNYEQREPWFQNI 110
Cdd:pfam16137   1 KLVPAYLEYFSVKKALKSLANDPGLAGMSVAEIRSSFDKRADINNIRSIKGED-LKIEKSGGGVVVSVDYEVRIPLFGNV 79


                  ....*.
gi 488618058  111 DLVMKF 116
Cdd:pfam16137  80 DLVIDF 85
 
Name Accession Description Interval E-value
DUF4845 pfam16137
Domain of unknown function (DUF4845); This family consists of uncharacterized proteins around ...
 31-116 4.73e-27

Domain of unknown function (DUF4845); This family consists of uncharacterized proteins around 120 residues in length and is mainly found in various Pseudomonas species. Distant homology analysis suggests that proteins from this family are related to pilin type IV proteins from the Bundlin (PF05307) family, this prediction is however not confirmed by any experimental evidence


Pssm-ID: 435163  Cd Length: 85  Bit Score: 95.67  E-value: 4.73e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488618058   31 KLVPHYLDYMTMKKIIETVDTNQALDITTVDDFYGYVGKNMQVNSIRDIDLNKaLKVTVENNAFKAHLNYEQREPWFQNI 110
Cdd:pfam16137   1 KLVPAYLEYFSVKKALKSLANDPGLAGMSVAEIRSSFDKRADINNIRSIKGED-LKIEKSGGGVVVSVDYEVRIPLFGNV 79


                  ....*.
gi 488618058  111 DLVMKF 116
Cdd:pfam16137  80 DLVIDF 85
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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