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Conserved domains on  [gi|488881326|ref|WP_002793551|]
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MULTISPECIES: 50S ribosomal protein L33 [Campylobacter]

Protein Classification

50S ribosomal protein L33( domain architecture ID 10011480)

50S ribosomal protein L33 is a component of the large ribosomal subunit 50S

Gene Ontology:  GO:0005840|GO:0006412|GO:0003735
PubMed:  24524803|11733066

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
RpmG COG0267
Ribosomal protein L33 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L33 ...
 1-49 9.61e-20

Ribosomal protein L33 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L33 is part of the Pathway/BioSystem: Ribosome 50S subunit


:

Pssm-ID: 440037  Cd Length: 52  Bit Score: 72.88  E-value: 9.61e-20
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*....
gi 488881326  1 MRIKVGLKCEECGDINYSTYKNSKNTTEKLELKKYCPRLKKHTLHKEVK 49
Cdd:COG0267   4 MREKITLACTECKGRNYTTTKNKRNTPERLELKKYCPKCRKHTLHKETK 52
 
Name Accession Description Interval E-value
RpmG COG0267
Ribosomal protein L33 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L33 ...
 1-49 9.61e-20

Ribosomal protein L33 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L33 is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 440037  Cd Length: 52  Bit Score: 72.88  E-value: 9.61e-20
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*....
gi 488881326  1 MRIKVGLKCEECGDINYSTYKNSKNTTEKLELKKYCPRLKKHTLHKEVK 49
Cdd:COG0267   4 MREKITLACTECKGRNYTTTKNKRNTPERLELKKYCPKCRKHTLHKETK 52
rpmG PRK00595
50S ribosomal protein L33; Validated
 1-49 7.31e-19

50S ribosomal protein L33; Validated


Pssm-ID: 179075  Cd Length: 53  Bit Score: 71.00  E-value: 7.31e-19
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*....
gi 488881326  1 MRIKVGLKCEECGDINYSTYKNSKNTTEKLELKKYCPRLKKHTLHKEVK 49
Cdd:PRK00595  5 MRVKIKLESTEGTGRFYTTTKNKRNTPEKLELKKYDPVLRKHVLHKETK 53
Ribosomal_L33 pfam00471
Ribosomal protein L33;
4-49 1.46e-15

Ribosomal protein L33;


Pssm-ID: 425701  Cd Length: 46  Bit Score: 62.44  E-value: 1.46e-15
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*.
gi 488881326   4 KVGLKCEECGDINYSTYKNSKNTTEKLELKKYCPRLKKHTLHKEVK 49
Cdd:pfam00471  1 KITLACTECKGRNYTTTKNKKNTPERLELKKYCPKCRKHTLHKETK 46
rpmG_bact TIGR01023
ribosomal protein L33, bacterial type; This model describes bacterial ribosomal protein L33 ...
 2-49 6.69e-13

ribosomal protein L33, bacterial type; This model describes bacterial ribosomal protein L33 and its chloroplast and mitochondrial equivalents. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 273399  Cd Length: 54  Bit Score: 55.92  E-value: 6.69e-13
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*...
gi 488881326   2 RIKVGLKCEECGDINYSTYKNSKNTTEKLELKKYCPRLKKHTLHKEVK 49
Cdd:TIGR01023  7 RELIRLVCTACTGINYTTTKNRRNKPEKLELRKYCPVCRKHVLHKEAK 54
 
Name Accession Description Interval E-value
RpmG COG0267
Ribosomal protein L33 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L33 ...
 1-49 9.61e-20

Ribosomal protein L33 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L33 is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 440037  Cd Length: 52  Bit Score: 72.88  E-value: 9.61e-20
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*....
gi 488881326  1 MRIKVGLKCEECGDINYSTYKNSKNTTEKLELKKYCPRLKKHTLHKEVK 49
Cdd:COG0267   4 MREKITLACTECKGRNYTTTKNKRNTPERLELKKYCPKCRKHTLHKETK 52
rpmG PRK00595
50S ribosomal protein L33; Validated
 1-49 7.31e-19

50S ribosomal protein L33; Validated


Pssm-ID: 179075  Cd Length: 53  Bit Score: 71.00  E-value: 7.31e-19
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*....
gi 488881326  1 MRIKVGLKCEECGDINYSTYKNSKNTTEKLELKKYCPRLKKHTLHKEVK 49
Cdd:PRK00595  5 MRVKIKLESTEGTGRFYTTTKNKRNTPEKLELKKYDPVLRKHVLHKETK 53
rpmG PRK00504
50S ribosomal protein L33; Validated
 1-49 2.68e-17

50S ribosomal protein L33; Validated


Pssm-ID: 234783  Cd Length: 50  Bit Score: 66.86  E-value: 2.68e-17
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*....
gi 488881326  1 MRIKVGLKCEECGDINYSTYKNSKNTTEKLELKKYCPRLKKHTLHKEVK 49
Cdd:PRK00504  2 MRKKITLACTECKSRNYTTTKNKKNTPERLELKKFCPRCNKHTLHKETK 50
Ribosomal_L33 pfam00471
Ribosomal protein L33;
4-49 1.46e-15

Ribosomal protein L33;


Pssm-ID: 425701  Cd Length: 46  Bit Score: 62.44  E-value: 1.46e-15
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*.
gi 488881326   4 KVGLKCEECGDINYSTYKNSKNTTEKLELKKYCPRLKKHTLHKEVK 49
Cdd:pfam00471  1 KITLACTECKGRNYTTTKNKKNTPERLELKKYCPKCRKHTLHKETK 46
rpmG_bact TIGR01023
ribosomal protein L33, bacterial type; This model describes bacterial ribosomal protein L33 ...
 2-49 6.69e-13

ribosomal protein L33, bacterial type; This model describes bacterial ribosomal protein L33 and its chloroplast and mitochondrial equivalents. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 273399  Cd Length: 54  Bit Score: 55.92  E-value: 6.69e-13
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*...
gi 488881326   2 RIKVGLKCEECGDINYSTYKNSKNTTEKLELKKYCPRLKKHTLHKEVK 49
Cdd:TIGR01023  7 RELIRLVCTACTGINYTTTKNRRNKPEKLELRKYCPVCRKHVLHKEAK 54
rpl33 CHL00104
ribosomal protein L33
 2-49 6.19e-10

ribosomal protein L33


Pssm-ID: 177033  Cd Length: 66  Bit Score: 48.82  E-value: 6.19e-10
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*...
gi 488881326  2 RIKVGLKCEEC----------GDINYSTYKNSKNTTEKLELKKYCPRLKKHTLHKEVK 49
Cdd:CHL00104  8 RVTVILECTSCvrngvnkestGISRYITQKNRHNTPNRLELKKFCPYCYKHTIHKEIK 65
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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