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Conserved domains on  [gi|488909418|ref|WP_002820493|]
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YneF family protein [Oenococcus oeni]

Protein Classification

YneF family protein( domain architecture ID 10508484)

YneF family protein similar to Staphylococcus epidermidis UPF0154 protein SERP0914

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
UPF0154 pfam03672
Uncharacterized protein family (UPF0154); This family contains a set of short bacterial ...
 8-66 3.96e-19

Uncharacterized protein family (UPF0154); This family contains a set of short bacterial proteins of unknown function.


:

Pssm-ID: 427437  Cd Length: 60  Bit Score: 72.25  E-value: 3.96e-19
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 488909418   8 LIGLVIGLAAGMVISRFTLKSYLKKNPPINEQMLKQIGASMGRNLSQKQINQMMSQMKK 66
Cdd:pfam03672  2 ILALIVGLVGGFFIARKYMEKQLKENPPINEKMIRAMMMQMGRKPSEKQIKQMMRSMKK 60
 
Name Accession Description Interval E-value
UPF0154 pfam03672
Uncharacterized protein family (UPF0154); This family contains a set of short bacterial ...
 8-66 3.96e-19

Uncharacterized protein family (UPF0154); This family contains a set of short bacterial proteins of unknown function.


Pssm-ID: 427437  Cd Length: 60  Bit Score: 72.25  E-value: 3.96e-19
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 488909418   8 LIGLVIGLAAGMVISRFTLKSYLKKNPPINEQMLKQIGASMGRNLSQKQINQMMSQMKK 66
Cdd:pfam03672  2 ILALIVGLVGGFFIARKYMEKQLKENPPINEKMIRAMMMQMGRKPSEKQIKQMMRSMKK 60
YneF COG3763
Uncharacterized conserved protein YneF, UPF0154 family [Function unknown];
3-67 2.78e-18

Uncharacterized conserved protein YneF, UPF0154 family [Function unknown];


Pssm-ID: 442977  Cd Length: 71  Bit Score: 70.73  E-value: 2.78e-18
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 488909418  3 WIWFLLIGLVIGLAAGMVISRFTLKSYLKKNPPINEQMLKQIGASMGRNLSQKQINQMMSQMKKN 67
Cdd:COG3763   6 WILIIIVALLAGLAGGFFIARKYMKKYLKKNPPINEDMIRAMMMQMGQKPSEKKINQMMNQMKKQ 70
PRK01844 PRK01844
YneF family protein;
8-66 1.33e-11

YneF family protein;


Pssm-ID: 100947  Cd Length: 72  Bit Score: 53.87  E-value: 1.33e-11
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*....
gi 488909418  8 LIGLVIGLAAGMVISRFTLKSYLKKNPPINEQMLKQIGASMGRNLSQKQINQMMSQMKK 66
Cdd:PRK01844 11 VVALVAGVALGFFIARKYMMNYLQKNPPINEQMLKMMMMQMGQKPSQKKINQMMSAMNK 69
 
Name Accession Description Interval E-value
UPF0154 pfam03672
Uncharacterized protein family (UPF0154); This family contains a set of short bacterial ...
 8-66 3.96e-19

Uncharacterized protein family (UPF0154); This family contains a set of short bacterial proteins of unknown function.


Pssm-ID: 427437  Cd Length: 60  Bit Score: 72.25  E-value: 3.96e-19
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 488909418   8 LIGLVIGLAAGMVISRFTLKSYLKKNPPINEQMLKQIGASMGRNLSQKQINQMMSQMKK 66
Cdd:pfam03672  2 ILALIVGLVGGFFIARKYMEKQLKENPPINEKMIRAMMMQMGRKPSEKQIKQMMRSMKK 60
YneF COG3763
Uncharacterized conserved protein YneF, UPF0154 family [Function unknown];
3-67 2.78e-18

Uncharacterized conserved protein YneF, UPF0154 family [Function unknown];


Pssm-ID: 442977  Cd Length: 71  Bit Score: 70.73  E-value: 2.78e-18
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 488909418  3 WIWFLLIGLVIGLAAGMVISRFTLKSYLKKNPPINEQMLKQIGASMGRNLSQKQINQMMSQMKKN 67
Cdd:COG3763   6 WILIIIVALLAGLAGGFFIARKYMKKYLKKNPPINEDMIRAMMMQMGQKPSEKKINQMMNQMKKQ 70
PRK01844 PRK01844
YneF family protein;
8-66 1.33e-11

YneF family protein;


Pssm-ID: 100947  Cd Length: 72  Bit Score: 53.87  E-value: 1.33e-11
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*....
gi 488909418  8 LIGLVIGLAAGMVISRFTLKSYLKKNPPINEQMLKQIGASMGRNLSQKQINQMMSQMKK 66
Cdd:PRK01844 11 VVALVAGVALGFFIARKYMMNYLQKNPPINEQMLKMMMMQMGQKPSQKKINQMMSAMNK 69
PRK00523 PRK00523
hypothetical protein; Provisional
 4-67 8.20e-10

hypothetical protein; Provisional


Pssm-ID: 179056  Cd Length: 72  Bit Score: 49.32  E-value: 8.20e-10
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 488909418  4 IWFLLIGLVIGLaagmVISRFTLKSYLKKNPPINEQMLKQIGASMGRNLSQKQINQMMSQMKKN 67
Cdd:PRK00523 12 IPLLIVGGIIGY----FVSKKMFKKQIRENPPITENMIRAMYMQMGRKPSESQIKQVMRSVKNA 71
PRK11677 PRK11677
DUF1043 family protein;
1-29 4.54e-05

DUF1043 family protein;


Pssm-ID: 236953  Cd Length: 134  Bit Score: 38.11  E-value: 4.54e-05
                         10        20
                 ....*....|....*....|....*....
gi 488909418   1 MSWIwFLLIGLVIGLAAGMVISRFTLKSY 29
Cdd:PRK11677   1 MTWE-YALIGLVVGIIIGAVAMRFGNRKL 28
YeaQ COG2261
Uncharacterized membrane protein YeaQ/YmgE, transglycosylase-associated protein family ...
 1-20 3.32e-03

Uncharacterized membrane protein YeaQ/YmgE, transglycosylase-associated protein family [General function prediction only];


Pssm-ID: 441862  Cd Length: 85  Bit Score: 32.32  E-value: 3.32e-03
                        10        20
                ....*....|....*....|
gi 488909418  1 MSWIWFLLIGLVIGLAAGMV 20
Cdd:COG2261   1 MGIIGWIIIGLIAGWLARAI 20
YhcB COG3105
Uncharacterized membrane-anchored protein YhcB, DUF1043 family [Function unknown];
1-33 8.46e-03

Uncharacterized membrane-anchored protein YhcB, DUF1043 family [Function unknown];


Pssm-ID: 442339  Cd Length: 139  Bit Score: 32.21  E-value: 8.46e-03
                         10        20        30
                 ....*....|....*....|....*....|...
gi 488909418   1 MSWIwFLLIGLVIGLAAGMVISRFTLKSYLKKN 33
Cdd:COG3105    4 MIWL-YAIIGLVVGIIIGFLLMRLLNRKVRQQQ 35
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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