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Conserved domains on  [gi|488932491|ref|WP_002843566|]
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iron ABC transporter permease [Peptostreptococcus anaerobius]

Protein Classification

FecCD family ABC transporter permease( domain architecture ID 10001816)

FecCD family ABC transporter permease such as iron ABC transporter permease, which is the transmembrane subunit (TM) found in a periplasmic binding protein (PBP)-dependent ATP-binding cassette (ABC) transporter involved in the import of iron and iron-containing compounds

CATH:  1.10.3470.10
Gene Ontology:  GO:0140359|GO:0042626
PubMed:  25750732|24638992
SCOP:  4002900
TCDB:  3.A.1

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
FepD COG0609
ABC-type Fe3+-siderophore transport system, permease component [Inorganic ion transport and ...
 47-349 1.76e-88

ABC-type Fe3+-siderophore transport system, permease component [Inorganic ion transport and metabolism];


:

Pssm-ID: 440374  Cd Length: 306  Bit Score: 268.48  E-value: 1.76e-88
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488932491  47 AIRTGSIDISFSKLMSGLFVKR--NPDVATIWDLRFPRVIIAMLAGAAISTSGALLQSVMKNPLTDPGIIGISSAASFVA 124
Cdd:COG0609    1 SLSLGAVPISLSDVLRALLGPDgdPTADLIVWDLRLPRVLLALLVGAALAVAGALMQGLTRNPLADPGILGVSSGAALGA 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488932491 125 VIISSFFP-AMYFSIPFFAVLGGLAAYLLIYLLAW-DGGANPVKLILVGVALNMTFSGLSEFCKASvgkgASLSRVQSIV 202
Cdd:COG0609   81 VLAIVLGGgLSALGLPLAAFLGALLAALLVYLLARrGGGLSPLRLVLAGVAVSALFSALTSLLLLL----ADPEQLRSIV 156

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488932491 203 E---GNIAQKTWADVNLLFWYVLIGLIVAFLLAKKCNILSLEDKTARGLGVNVDRDRFIVAIVAIVIVSISTATVGVIGF 279
Cdd:COG0609  157 FwlmGSLAGASWDDVLLLLPVLLIGLLLALLLARALNALALGDETARSLGVNVERLRLLLLLLAALLTGAAVAVAGPIGF 236

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488932491 280 LGLIVPHIAKLLVGSDHKVKLPYTMLLGAVMLLLSDTVGRAMFAPYEIPAAIICAVVGGPFFILLLRRGG 349
Cdd:COG0609  237 VGLVVPHIARLLVGPDHRRLLPASALLGALLLLLADTLARTILAPAELPVGIVTALIGAPFFLYLLRRRR 306
 
Name Accession Description Interval E-value
FepD COG0609
ABC-type Fe3+-siderophore transport system, permease component [Inorganic ion transport and ...
 47-349 1.76e-88

ABC-type Fe3+-siderophore transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440374  Cd Length: 306  Bit Score: 268.48  E-value: 1.76e-88
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488932491  47 AIRTGSIDISFSKLMSGLFVKR--NPDVATIWDLRFPRVIIAMLAGAAISTSGALLQSVMKNPLTDPGIIGISSAASFVA 124
Cdd:COG0609    1 SLSLGAVPISLSDVLRALLGPDgdPTADLIVWDLRLPRVLLALLVGAALAVAGALMQGLTRNPLADPGILGVSSGAALGA 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488932491 125 VIISSFFP-AMYFSIPFFAVLGGLAAYLLIYLLAW-DGGANPVKLILVGVALNMTFSGLSEFCKASvgkgASLSRVQSIV 202
Cdd:COG0609   81 VLAIVLGGgLSALGLPLAAFLGALLAALLVYLLARrGGGLSPLRLVLAGVAVSALFSALTSLLLLL----ADPEQLRSIV 156

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488932491 203 E---GNIAQKTWADVNLLFWYVLIGLIVAFLLAKKCNILSLEDKTARGLGVNVDRDRFIVAIVAIVIVSISTATVGVIGF 279
Cdd:COG0609  157 FwlmGSLAGASWDDVLLLLPVLLIGLLLALLLARALNALALGDETARSLGVNVERLRLLLLLLAALLTGAAVAVAGPIGF 236

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488932491 280 LGLIVPHIAKLLVGSDHKVKLPYTMLLGAVMLLLSDTVGRAMFAPYEIPAAIICAVVGGPFFILLLRRGG 349
Cdd:COG0609  237 VGLVVPHIARLLVGPDHRRLLPASALLGALLLLLADTLARTILAPAELPVGIVTALIGAPFFLYLLRRRR 306
FecCD pfam01032
FecCD transport family; This is a sub-family of bacterial binding protein-dependent transport ...
 39-347 1.61e-75

FecCD transport family; This is a sub-family of bacterial binding protein-dependent transport systems family. This Pfam entry contains the inner components of this multicomponent transport system.


Pssm-ID: 426003  Cd Length: 311  Bit Score: 235.50  E-value: 1.61e-75
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488932491   39 LLILLFFIAIRTGSIDISFSKLMSGLFVKRNPDVATI-WDLRFPRVIIAMLAGAAISTSGALLQSVMKNPLTDPGIIGIS 117
Cdd:pfam01032   1 LLLLLILLSLFIGAVKISPSDVFSALLGGDDSLAALIvLDLRLPRVLAALLVGAALAVSGALLQTVTRNPLADPSILGIS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488932491  118 SAASFVAVIISSFFP-AMYFSIPFFAVLGGLAAYLLI-YLLAWDGGANPVKLILVGVALNMTFSGLSEFCKASVGKgASL 195
Cdd:pfam01032  81 SGAALGAVLAILLGGsLSLFALPLAAFIGALLAALLVyFLSRGRGGASPLRLILAGIAVSALLSALTSLLLLLLNP-EAL 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488932491  196 SRVQSIVEGNIAQKTWADVNLLFWYVLIGLIVAFLLAKKCNILSLEDKTARGLGVNVDRDRFIVAIVAIVIVSISTATVG 275
Cdd:pfam01032 160 QSILFWLMGSLSGANWSDVLILLPLLLIGLILLLLLARKLNLLSLGDDTAKSLGVNVNRVRLLLLLLASLLTAASVAVVG 239

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 488932491  276 VIGFLGLIVPHIAKLLVGSDHKVKLPYTMLLGAVMLLLSDTVGRAMFAPYEIPAAIICAVVGGPFFILLLRR 347
Cdd:pfam01032 240 PIGFVGLIVPHIARLLVGANHRRLLPLSALLGALLLLLADILARTILSPYELPVGIVTALIGAPFFIYLLLR 311
PRK10577 PRK10577
Fe(3+)-hydroxamate ABC transporter permease FhuB;
21-349 5.04e-61

Fe(3+)-hydroxamate ABC transporter permease FhuB;


Pssm-ID: 236720 [Multi-domain]  Cd Length: 668  Bit Score: 207.00  E-value: 5.04e-61
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488932491  21 GYAVNTRKKTVVFLTTSVLLILLFFIAIrtgsidiSFSKLMSGLFVKRNPDVATIWDLRFPRVIIAMLAGAAISTSGALL 100
Cdd:PRK10577 346 RVAARRRRVLAWLLALGLLLLLALVVAL-------SFGRDAHGWNWLSGQLLDALLPLRLPRLLAALLAGAMLAVAGTLL 418

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488932491 101 QSVMKNPLTDPGIIGISSAASFVAVIISSFFPAMYF-SIPFFAVLGGLAAYLLIYLLAWDGGANPVKLILVGVALNMTFS 179
Cdd:PRK10577 419 QRLTRNPLASPEVLGISSGAGLGVVLALFLVPGAGFgWLLAAALLGALAALALILLLARRGGFAPERLLLTGIALSALFT 498

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488932491 180 GLSEFCKASVGkgaslSRVQSIV---EGNIAQKTWADVNLLFWYVLIGLIVAFLLAKKCNILSLEDKTARGLGVNVDRDR 256
Cdd:PRK10577 499 ALIQLLLASGD-----PRAAQLLtwlSGSTYGVTWAQALPLLIVAVLLLALALLLRRWLDLLPLGDDTARALGLPVTRAR 573

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488932491 257 FIVAIVAIVIVSISTATVGVIGFLGLIVPHIAKLLVGSDHKVKLPYTMLLGAVMLLLSDTVGRAMFAPYEIPAAIICAVV 336
Cdd:PRK10577 574 LALLLLAALLTAAATATVGPLSFVGLMAPHLARMLGGRRARPQLVLAALLGALLMVLADWLGRTLLFPYQIPAGLLAALI 653

                        330
                 ....*....|...
gi 488932491 337 GGPFFILLLRRGG 349
Cdd:PRK10577 654 GAPYFLWLLRRSR 666
TM_ABC_iron-siderophores_like cd06550
Transmembrane subunit (TM), of Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 83-345 7.14e-46

Transmembrane subunit (TM), of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters involved in the uptake of siderophores, heme, vitamin B12, or the divalent cations Mg2+ and Zn2+. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The TMs are bundles of alpha helices that transverse the cytoplasmic membrane multiple times. The two ABCs bind and hydrolyze ATP and drive the transport reaction. Each TM has a prominent cytoplasmic loop which contacts an ABC and represents a conserved motif. The two TMs form either a homodimer (e.g. in the case of the BtuC subunits of the Escherichia coli BtuCD vitamin B12 transporter), a heterodimer (e.g. the TroC and TroD subunits of the Treponema pallidum general transition metal transporter, TroBCD), or a pseudo-heterodimer (e.g. the FhuB protein of the E. coli ferrichrome transporter, FhuBC). FhuB contains two tandem TMs which associate to form the pseudo-heterodimer. Both FhuB TMs are found in this hierarchy.


Pssm-ID: 119348 [Multi-domain]  Cd Length: 261  Bit Score: 157.33  E-value: 7.14e-46
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488932491  83 VIIAMLAGAAISTSGALLQSVMKNPLTDPGIIGISSAASFVAVIISSFFPA-MYFSIPFFAVLGGLAAYLLIYLLAWDGG 161
Cdd:cd06550    1 LLAALLVGAALAVSGAILQSLTRNRLASPSILGISHGALLGVVLALLLGIGlSNYALGAFAFAGALAIALLVLLLASRGG 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488932491 162 ANPVKLILVGVALNMTFSGLSEFckASVGKGASLSRVQSIVEGNIAQKTWADVNLLFWYVLIGLIVAFLLAKKCNILSLE 241
Cdd:cd06550   81 LSPSKLILIGIVLSAFFSAGVIL--ISLLSDDSLQDLNIWLFGSILGVTWEDLLILLIILLLVLLLLLLLSRKLNLLTFD 158

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488932491 242 DKTARGLGVNVDRDRFIVAIVAIVIVSISTATVGVIGFLGLIVPHIAKLLVGSDHKVKLPYTMLLGAVMLLLSDTVGRAm 321
Cdd:cd06550  159 EDLAKSLGINVNLLRLLLLLLVALLVVAAVALVGVILFVGLIAPHLARRLFGRSHRYLLPLSALLGAILLLLGDLLSRT- 237

                        250       260
                 ....*....|....*....|....
gi 488932491 322 FAPYEIPAAIICAVVGGPFFILLL 345
Cdd:cd06550  238 LLPSELPVGPVTALLGAPYFLYLL 261
F420-0_ABCperm TIGR03869
proposed F420-0 ABC transporter, permease protein; his small clade of ABC-type transporter ...
 73-348 2.18e-45

proposed F420-0 ABC transporter, permease protein; his small clade of ABC-type transporter permease protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and an ATPase (TIGR03873). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with an F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this permease protein is a component of a F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.


Pssm-ID: 163581  Cd Length: 325  Bit Score: 157.71  E-value: 2.18e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488932491   73 ATIWDLRFPRVIIAMLAGAAISTSGALLQSVMKNPLTDPGIIGISSAASFVAVIISSFFPAMyfSIPFFAVLGGLAAYLL 152
Cdd:TIGR03869  47 AIVWDLRLPRVLTAAAVGAGLAIAGAVMQSLTRNPLADPYLLGLSSGASLGAVAVLVLGVAV--LLPVAAFAGALLALAA 124

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488932491  153 IYLLAWDGGA-NPVKLILVGVALNMTFSGLSEFCKASVGKGASLSRVQSIVEGNIAQKTWADVNLLFWYVLIGLIVAFLL 231
Cdd:TIGR03869 125 TLGLARTLGTlTPTRTILAGLAVSQLCAAVTSFVIFWSATGDSYREILSWLMGSLAGATWGSVAIAGGALLVVGLVLLAS 204

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488932491  232 AKKCNILSLEDKTARGLGVNVDRDRFIVAIVAIVIVSISTATVGVIGFLGLIVPHIAKLLVGSDHKVKLPYTMLLGAVML 311
Cdd:TIGR03869 205 GRVLDAFAFGDSSAAALGVDVERTRWLLLTLVALLTGALVSVSGAIGFVGLILPHAVRLLTGPRHRLLLPVSALAGAVFL 284

                         250       260       270
                  ....*....|....*....|....*....|....*..
gi 488932491  312 LLSDTVGRAMFAPYEIPAAIICAVVGGPFFILLLRRG 348
Cdd:TIGR03869 285 VWADTLARTVFAPRELPVGIITALIGAPVFAVLLYRS 321
 
Name Accession Description Interval E-value
FepD COG0609
ABC-type Fe3+-siderophore transport system, permease component [Inorganic ion transport and ...
 47-349 1.76e-88

ABC-type Fe3+-siderophore transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440374  Cd Length: 306  Bit Score: 268.48  E-value: 1.76e-88
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488932491  47 AIRTGSIDISFSKLMSGLFVKR--NPDVATIWDLRFPRVIIAMLAGAAISTSGALLQSVMKNPLTDPGIIGISSAASFVA 124
Cdd:COG0609    1 SLSLGAVPISLSDVLRALLGPDgdPTADLIVWDLRLPRVLLALLVGAALAVAGALMQGLTRNPLADPGILGVSSGAALGA 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488932491 125 VIISSFFP-AMYFSIPFFAVLGGLAAYLLIYLLAW-DGGANPVKLILVGVALNMTFSGLSEFCKASvgkgASLSRVQSIV 202
Cdd:COG0609   81 VLAIVLGGgLSALGLPLAAFLGALLAALLVYLLARrGGGLSPLRLVLAGVAVSALFSALTSLLLLL----ADPEQLRSIV 156

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488932491 203 E---GNIAQKTWADVNLLFWYVLIGLIVAFLLAKKCNILSLEDKTARGLGVNVDRDRFIVAIVAIVIVSISTATVGVIGF 279
Cdd:COG0609  157 FwlmGSLAGASWDDVLLLLPVLLIGLLLALLLARALNALALGDETARSLGVNVERLRLLLLLLAALLTGAAVAVAGPIGF 236

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488932491 280 LGLIVPHIAKLLVGSDHKVKLPYTMLLGAVMLLLSDTVGRAMFAPYEIPAAIICAVVGGPFFILLLRRGG 349
Cdd:COG0609  237 VGLVVPHIARLLVGPDHRRLLPASALLGALLLLLADTLARTILAPAELPVGIVTALIGAPFFLYLLRRRR 306
FecCD pfam01032
FecCD transport family; This is a sub-family of bacterial binding protein-dependent transport ...
 39-347 1.61e-75

FecCD transport family; This is a sub-family of bacterial binding protein-dependent transport systems family. This Pfam entry contains the inner components of this multicomponent transport system.


Pssm-ID: 426003  Cd Length: 311  Bit Score: 235.50  E-value: 1.61e-75
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488932491   39 LLILLFFIAIRTGSIDISFSKLMSGLFVKRNPDVATI-WDLRFPRVIIAMLAGAAISTSGALLQSVMKNPLTDPGIIGIS 117
Cdd:pfam01032   1 LLLLLILLSLFIGAVKISPSDVFSALLGGDDSLAALIvLDLRLPRVLAALLVGAALAVSGALLQTVTRNPLADPSILGIS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488932491  118 SAASFVAVIISSFFP-AMYFSIPFFAVLGGLAAYLLI-YLLAWDGGANPVKLILVGVALNMTFSGLSEFCKASVGKgASL 195
Cdd:pfam01032  81 SGAALGAVLAILLGGsLSLFALPLAAFIGALLAALLVyFLSRGRGGASPLRLILAGIAVSALLSALTSLLLLLLNP-EAL 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488932491  196 SRVQSIVEGNIAQKTWADVNLLFWYVLIGLIVAFLLAKKCNILSLEDKTARGLGVNVDRDRFIVAIVAIVIVSISTATVG 275
Cdd:pfam01032 160 QSILFWLMGSLSGANWSDVLILLPLLLIGLILLLLLARKLNLLSLGDDTAKSLGVNVNRVRLLLLLLASLLTAASVAVVG 239

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 488932491  276 VIGFLGLIVPHIAKLLVGSDHKVKLPYTMLLGAVMLLLSDTVGRAMFAPYEIPAAIICAVVGGPFFILLLRR 347
Cdd:pfam01032 240 PIGFVGLIVPHIARLLVGANHRRLLPLSALLGALLLLLADILARTILSPYELPVGIVTALIGAPFFIYLLLR 311
PRK10577 PRK10577
Fe(3+)-hydroxamate ABC transporter permease FhuB;
21-349 5.04e-61

Fe(3+)-hydroxamate ABC transporter permease FhuB;


Pssm-ID: 236720 [Multi-domain]  Cd Length: 668  Bit Score: 207.00  E-value: 5.04e-61
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488932491  21 GYAVNTRKKTVVFLTTSVLLILLFFIAIrtgsidiSFSKLMSGLFVKRNPDVATIWDLRFPRVIIAMLAGAAISTSGALL 100
Cdd:PRK10577 346 RVAARRRRVLAWLLALGLLLLLALVVAL-------SFGRDAHGWNWLSGQLLDALLPLRLPRLLAALLAGAMLAVAGTLL 418

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488932491 101 QSVMKNPLTDPGIIGISSAASFVAVIISSFFPAMYF-SIPFFAVLGGLAAYLLIYLLAWDGGANPVKLILVGVALNMTFS 179
Cdd:PRK10577 419 QRLTRNPLASPEVLGISSGAGLGVVLALFLVPGAGFgWLLAAALLGALAALALILLLARRGGFAPERLLLTGIALSALFT 498

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488932491 180 GLSEFCKASVGkgaslSRVQSIV---EGNIAQKTWADVNLLFWYVLIGLIVAFLLAKKCNILSLEDKTARGLGVNVDRDR 256
Cdd:PRK10577 499 ALIQLLLASGD-----PRAAQLLtwlSGSTYGVTWAQALPLLIVAVLLLALALLLRRWLDLLPLGDDTARALGLPVTRAR 573

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488932491 257 FIVAIVAIVIVSISTATVGVIGFLGLIVPHIAKLLVGSDHKVKLPYTMLLGAVMLLLSDTVGRAMFAPYEIPAAIICAVV 336
Cdd:PRK10577 574 LALLLLAALLTAAATATVGPLSFVGLMAPHLARMLGGRRARPQLVLAALLGALLMVLADWLGRTLLFPYQIPAGLLAALI 653

                        330
                 ....*....|...
gi 488932491 337 GGPFFILLLRRGG 349
Cdd:PRK10577 654 GAPYFLWLLRRSR 666
FepG COG4779
ABC-type enterobactin transport system, permease component [Inorganic ion transport and ...
 27-347 4.14e-55

ABC-type enterobactin transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 443810  Cd Length: 344  Bit Score: 183.78  E-value: 4.14e-55
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488932491  27 RKKTVVFLTTSVLLILLFFIAIRTGSIDISFSKLMSGLFVKRNP-DVATIWDLRFPRVIIAMLAGAAISTSGALLQSVMK 105
Cdd:COG4779   20 RRALLVTLVLLLLLLALAVLALTLGDYPLSPGDVLRALLGEGDPgASFVVLELRLPRALAALLVGAALGLSGAIFQSLTR 99

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488932491 106 NPLTDPGIIGISSAASFVAVIISSFFPAMYFSIPFFAVLGGLAAYLLIYLLAWDGGANPVKLILVGVALNMTFSGLSEFC 185
Cdd:COG4779  100 NPLASPDIIGITAGASAGAVAAIVVLGGSGLAVALGALAGGLATALLVYLLAWRGGVSGYRLILVGIGVSAMLTAVNSYL 179

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488932491 186 KASvgkgASLSRVQSIVE---GNIAQKTWADVNLLFWYVLIGLIVAFLLAKKCNILSLEDKTARGLGVNVDRDRFIVAIV 262
Cdd:COG4779  180 LTR----ADLEDAQSAAVwltGSLNGRTWEDVLPLAVALAVLLPLALALARRLRLLELGDDTAAALGVRVERTRLLLLLV 255

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488932491 263 AIVIVSISTATVGVIGFLGLIVPHIAKLLVGSdHKVKLPYTMLLGAVMLLLSDTVGRAMFAPYEIPAAIICAVVGGPFFI 342
Cdd:COG4779  256 AVALAAVATAAAGPIAFVALAAPQIARRLTRS-PGPPLLPSALVGALLLLAADLVAQHLLAPVQLPVGVVTGALGGPYLL 334


                 ....*
gi 488932491 343 LLLRR 347
Cdd:COG4779  335 WLLIR 339
fecD PRK09777
Fe(3+) dicitrate ABC transporter permease subunit FecD;
28-347 8.75e-54

Fe(3+) dicitrate ABC transporter permease subunit FecD;


Pssm-ID: 182071  Cd Length: 318  Bit Score: 179.47  E-value: 8.75e-54
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488932491  28 KKTVVFLTTSVLLILLFFIAIRTGSIDISFSKLMSGLFVKRNPDVaTIWDLRFPRVIIAMLAGAAISTSGALLQSVMKNP 107
Cdd:PRK09777   1 MKIALVIFITLALAGCALLSLRMGVIPLPWRALLTDWQAGDEHYY-VLMEYRLPRLLLALFVGAALAVSGVLVQGIVRNP 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488932491 108 LTDPGIIGISSAASFVAVIISSFFPAMYFS-IPFFAVLGGLAAYLLIYLLAwdGGANPVKLILVGVALNMTFSGLSEFCK 186
Cdd:PRK09777  80 LASPDILGVNHAASLASVGALLLFPSLPVMwLPLLAFIGGMAGLILLKMLA--GTHQPMKLALTGVALSALWASLTDYLM 157

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488932491 187 asvgkgasLSRVQSI------VEGNIAQKTWADVNLLFWYVLIGLIVAFLLAKKCNILSLEDKTARGLGVNVDRDRFIVA 260
Cdd:PRK09777 158 --------LSRPQDInnallwLTGSLWGRDWSFVKVALPWLILLLPLSLSFCRDLDLLALGDARATTLGVSVPHTQFWAL 229

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488932491 261 IVAIVIVSISTATVGVIGFLGLIVPHIAKLLVGSDHKVKLPYTMLLGAVMLLLSDTVGRAMFAPYEIPAAIICAVVGGPF 340
Cdd:PRK09777 230 LLAVALTATGVAACGPISFIGLVVPHLMRSLVGGRHRRLLPVSALTGALLLLLADLLARIIHPPLELPAGVLTAIIGAPW 309


                 ....*..
gi 488932491 341 FILLLRR 347
Cdd:PRK09777 310 FFWLLVR 316
fecC PRK11228
iron-dicitrate ABC transporter permease FecC;
34-349 6.30e-50

iron-dicitrate ABC transporter permease FecC;


Pssm-ID: 183042  Cd Length: 323  Bit Score: 169.49  E-value: 6.30e-50
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488932491  34 LTTSVLLILLFFIAIRTGSIDISFSKLMSGLFVKRNPDV--ATIWDLRFPRVIIAMLAGAAISTSGALLQSVMKNPLTDP 111
Cdd:PRK11228   4 LPVAALIGLFWLSLFCYSAIPISAADALNALLPGHTPTLpeALVQNLRLPRSLVAVLIGASLALAGALLQTLTHNPLASP 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488932491 112 GIIGISSAASFVAVIISSFFPAMY--FSIPFFAVLGGLA--AYLLIYLLAWDGGANPVKLILVGVALNMTFSGLSEFCKA 187
Cdd:PRK11228  84 SLLGINSGAALAMALTSALSPTPFagYSLAFIAACGGGLswLLVMTAGGGWRHTHDRNRLILAGIALSALCMALTRITLL 163

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488932491 188 SVGKGASlsRVQSIVEGNIAQKTWADVNLLFWYVLIGLIVAFLLAKKCNILSLEDKTARGLGVNVDRDRFIVAIVAIVIV 267
Cdd:PRK11228 164 LAEDHAY--GIFYWLAGGVSHARWQEVWQLLPFVVTAVPVVLLLANQLNLLNLSDSSAHTLGVNLTRLRLVVNMLVLLLV 241

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488932491 268 SISTATVGVIGFLGLIVPHIAKLLVGSDHKVKLPYTMLLGAVMLLLSDTVGRAMFAPYEIPAAIICAVVGGPFFILLLRR 347
Cdd:PRK11228 242 GACVSVAGPVAFIGLLVPHLARFWIGYDQRNVLPMSMLLGATLMLLADLLARALAFPGELPAGAVLALIGAPCFVWLARR 321


                 ..
gi 488932491 348 GG 349
Cdd:PRK11228 322 RG 323
PRK10577 PRK10577
Fe(3+)-hydroxamate ABC transporter permease FhuB;
23-351 3.51e-49

Fe(3+)-hydroxamate ABC transporter permease FhuB;


Pssm-ID: 236720 [Multi-domain]  Cd Length: 668  Bit Score: 175.03  E-value: 3.51e-49
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488932491  23 AVNTRKKTVVFLTTSVLLILLFFIAIRTGSIDISFSKLMSGLFVKRNPDVATI--WDLRFPRVIIAMLAGAAISTSGALL 100
Cdd:PRK10577   4 LMSRRRARLPALLLALLLLLALALTLTQLSAALPLSQWLQALWGPDADDLEQLllHYSRLPRLAIALLVGAALGLAGALL 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488932491 101 QSVMKNPLTDPGIIGISSAASFVAVIISSFFPAMYFSIP-FFAVLGGLAAYLLIYLLAWDGGANPVKLILVGVALNMTFS 179
Cdd:PRK10577  84 QQVLRNPLASPTTLGVAAGAQLALVLATLFAPALLALASqLAAFAGGLLAAALVFALAGGKRLSPLRLVLAGMVVSLYLG 163

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488932491 180 GLSefckasvgKGASLSRVQSIVE------GNIAQKTWADVNLLFWYVLIGLIVAFLLAKKCNILSLEDKTARGLGVNVD 253
Cdd:PRK10577 164 ALT--------TLLLLFNEQYLQGlflwgaGSLAQNDWSGVQRLLPRLLVGLLLLLLLARPLTLLGLGDDVARSLGLAVS 235

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488932491 254 RDRFIVAIVAIVIVSISTATVGVIGFLGLIVPHIAKLLVGSDHKVKLPYTMLLGAVMLLLSDTVGRAM--FAPYEIPAAI 331
Cdd:PRK10577 236 LTRLAALALAVLLSAAVVSAVGPIGFIGLAAPNLARLLGARRLRARLPLSPLIGALLLLLTDQLVRLLagVGGELLPTGA 315

                        330       340
                 ....*....|....*....|
gi 488932491 332 ICAVVGGPFFILLLRRGGDS 351
Cdd:PRK10577 316 VTALIGAPLLLWLLPRLRSA 335
btuC PRK09535
cobalamin ABC transporter permease BtuC;
77-347 5.17e-46

cobalamin ABC transporter permease BtuC;


Pssm-ID: 236553  Cd Length: 366  Bit Score: 160.69  E-value: 5.17e-46
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488932491  77 DLRFPRVIIAMLAGAAISTSGALLQSVMKNPLTDPGIIGISSAASFVAVIISSFFPAMYFSIPFFAVLGGLAAYLLIYLL 156
Cdd:PRK09535  93 QIRLPRILLAATVGFALAAAGTVMQGFFRNPMADPSIIGVSSGAAVGAVAAIVLPLAVPFGLQAAAFAGALVAAFGVYAI 172

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488932491 157 AWDGGANPVK-LILVGVALNMTFSGLSEFCKasVGKGASLSRVQSIVEGNIAQKTWADVNLLFWYVLIGLIVAFLLAKKC 235
Cdd:PRK09535 173 ATENGRTPVAtLLLAGVAVQTFLGAVISYLL--LHSGESLRRAVYWLMGHLHGSTWSDVEVALPVVVVGFVVLLAYARDL 250

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488932491 236 NILSLEDKTARGLGVNVDRDRFIVAIVAIVIVSISTATVGVIGFLGLIVPHIAKLLVGSDHKVKLPYTMLLGAVMLLLSD 315
Cdd:PRK09535 251 NVLLLGEEDAHTLGIEVERTKRLLLALASVVTAAAVAVAGVIGFVGLIVPHVMRLLVGPDHRILLPTSALAGASFLVATD 330

                        250       260       270
                 ....*....|....*....|....*....|..
gi 488932491 316 TVGRAmfAPYEIPAAIICAVVGGPFFILLLRR 347
Cdd:PRK09535 331 TVARS--GPAEVPVGIVTAALGAPFFLYLLRT 360
TM_ABC_iron-siderophores_like cd06550
Transmembrane subunit (TM), of Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 83-345 7.14e-46

Transmembrane subunit (TM), of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters involved in the uptake of siderophores, heme, vitamin B12, or the divalent cations Mg2+ and Zn2+. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The TMs are bundles of alpha helices that transverse the cytoplasmic membrane multiple times. The two ABCs bind and hydrolyze ATP and drive the transport reaction. Each TM has a prominent cytoplasmic loop which contacts an ABC and represents a conserved motif. The two TMs form either a homodimer (e.g. in the case of the BtuC subunits of the Escherichia coli BtuCD vitamin B12 transporter), a heterodimer (e.g. the TroC and TroD subunits of the Treponema pallidum general transition metal transporter, TroBCD), or a pseudo-heterodimer (e.g. the FhuB protein of the E. coli ferrichrome transporter, FhuBC). FhuB contains two tandem TMs which associate to form the pseudo-heterodimer. Both FhuB TMs are found in this hierarchy.


Pssm-ID: 119348 [Multi-domain]  Cd Length: 261  Bit Score: 157.33  E-value: 7.14e-46
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488932491  83 VIIAMLAGAAISTSGALLQSVMKNPLTDPGIIGISSAASFVAVIISSFFPA-MYFSIPFFAVLGGLAAYLLIYLLAWDGG 161
Cdd:cd06550    1 LLAALLVGAALAVSGAILQSLTRNRLASPSILGISHGALLGVVLALLLGIGlSNYALGAFAFAGALAIALLVLLLASRGG 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488932491 162 ANPVKLILVGVALNMTFSGLSEFckASVGKGASLSRVQSIVEGNIAQKTWADVNLLFWYVLIGLIVAFLLAKKCNILSLE 241
Cdd:cd06550   81 LSPSKLILIGIVLSAFFSAGVIL--ISLLSDDSLQDLNIWLFGSILGVTWEDLLILLIILLLVLLLLLLLSRKLNLLTFD 158

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488932491 242 DKTARGLGVNVDRDRFIVAIVAIVIVSISTATVGVIGFLGLIVPHIAKLLVGSDHKVKLPYTMLLGAVMLLLSDTVGRAm 321
Cdd:cd06550  159 EDLAKSLGINVNLLRLLLLLLVALLVVAAVALVGVILFVGLIAPHLARRLFGRSHRYLLPLSALLGAILLLLGDLLSRT- 237

                        250       260
                 ....*....|....*....|....
gi 488932491 322 FAPYEIPAAIICAVVGGPFFILLL 345
Cdd:cd06550  238 LLPSELPVGPVTALLGAPYFLYLL 261
F420-0_ABCperm TIGR03869
proposed F420-0 ABC transporter, permease protein; his small clade of ABC-type transporter ...
 73-348 2.18e-45

proposed F420-0 ABC transporter, permease protein; his small clade of ABC-type transporter permease protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and an ATPase (TIGR03873). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with an F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this permease protein is a component of a F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.


Pssm-ID: 163581  Cd Length: 325  Bit Score: 157.71  E-value: 2.18e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488932491   73 ATIWDLRFPRVIIAMLAGAAISTSGALLQSVMKNPLTDPGIIGISSAASFVAVIISSFFPAMyfSIPFFAVLGGLAAYLL 152
Cdd:TIGR03869  47 AIVWDLRLPRVLTAAAVGAGLAIAGAVMQSLTRNPLADPYLLGLSSGASLGAVAVLVLGVAV--LLPVAAFAGALLALAA 124

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488932491  153 IYLLAWDGGA-NPVKLILVGVALNMTFSGLSEFCKASVGKGASLSRVQSIVEGNIAQKTWADVNLLFWYVLIGLIVAFLL 231
Cdd:TIGR03869 125 TLGLARTLGTlTPTRTILAGLAVSQLCAAVTSFVIFWSATGDSYREILSWLMGSLAGATWGSVAIAGGALLVVGLVLLAS 204

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488932491  232 AKKCNILSLEDKTARGLGVNVDRDRFIVAIVAIVIVSISTATVGVIGFLGLIVPHIAKLLVGSDHKVKLPYTMLLGAVML 311
Cdd:TIGR03869 205 GRVLDAFAFGDSSAAALGVDVERTRWLLLTLVALLTGALVSVSGAIGFVGLILPHAVRLLTGPRHRLLLPVSALAGAVFL 284

                         250       260       270
                  ....*....|....*....|....*....|....*..
gi 488932491  312 LLSDTVGRAMFAPYEIPAAIICAVVGGPFFILLLRRG 348
Cdd:TIGR03869 285 VWADTLARTVFAPRELPVGIITALIGAPVFAVLLYRS 321
PRK10441 PRK10441
Fe(3+)-siderophore ABC transporter permease;
29-347 8.05e-42

Fe(3+)-siderophore ABC transporter permease;


Pssm-ID: 182464  Cd Length: 335  Bit Score: 148.70  E-value: 8.05e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488932491  29 KTVVFLTTSVLLILLFFIAIRTGSIDISFSKLMSGLF-VKRNPDVATIWDLRFPRVIIAMLAGAAISTSGALLQSVMKNP 107
Cdd:PRK10441   9 RAIAVPGLLLLLIIATALSLLIGAKSLPASVVLEALSgTCQSADCTIVLDARLPRTLAGLLAGGALGLAGALMQTLTRNP 88

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488932491 108 LTDPGIIGISSAASFVAVIISSFFPamyFSIP----FFAVLGGLAAYLLIYLLAWDGG--ANPVKLILVGVALNMTFSGL 181
Cdd:PRK10441  89 LADPGLLGVNAGASFAIVLGAALFG---YSSAqeqlAMAFAGALVASLIVAFTGSQGGgqLSPVRLTLAGVALAAVLEGL 165

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488932491 182 SefckasvgKGASL------SRVQSIVEGNIAQKTWADVNLLFWYVLIGLIVAFLLAKKCNILSLEDKTARGLGVNVDRD 255
Cdd:PRK10441 166 T--------SGIALlnpdvyDQLRFWQAGSLDIRNLHTLKVVLIPVLIAGATALLLSRALNSLSLGSDTATALGSRVART 237

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488932491 256 RFIVAIVAIVIVSISTATVGVIGFLGLIVPHIAKLLVGSDHKVKLPYTMLLGAVMLLLSDTVGRaMFAPYEIPAAIICAV 335
Cdd:PRK10441 238 QLIGLLAITVLCGSATAVVGPIAFIGLMMPHMARWLVGADHRWSLPVTLLATPALLLFADIIGR-LLVPGELRVSVVSAF 316

                        330
                 ....*....|..
gi 488932491 336 VGGPFFILLLRR 347
Cdd:PRK10441 317 IGAPVLIFLVRR 328
BtuC COG4139
ABC-type cobalamin transport system, permease component BtuC [Coenzyme transport and ...
 33-348 8.77e-40

ABC-type cobalamin transport system, permease component BtuC [Coenzyme transport and metabolism];


Pssm-ID: 443314  Cd Length: 327  Bit Score: 143.07  E-value: 8.77e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488932491  33 FLTTSVLLILLFFIAIRTGSIDISFSKLMSGLFVKrnpdvaTIWDLRFPRVIIAMLAGAAISTSGALLQSVMKNPLTDPG 112
Cdd:COG4139   15 LLLLLLLLLLLFVLSLCAGEVWIPPTQWLSEAWQL------FVWQLRLPRTLAAVLVGASLAVSGAVMQALFENPLAEPG 88

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488932491 113 IIGISSAASFVAVIISSFFPAM--YFSIPFFAVLGGLAAYLLIYLLAwDGGANPVKLILVGVALN------MT----FS- 179
Cdd:COG4139   89 LLGISNGAGVGLVLVVLLGGGLlpPWLLSLAAIAGALLVTLLLLAFA-RRRLSNARLLLIGVALGiicsaiMTwavyFSs 167

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488932491 180 --GLSEFCKASVGkgaSLSRVQSivegniaQKTWadvnlLFWYVLIGLIVAFLLAKKCNILSLEDKTARGLGVNVDRDRF 257
Cdd:COG4139  168 slDLRQLMYWMMG---SFGGVDW-------RQLW-----LLLALLPVLLWLCLQGKPLNLLLLGENQARQLGLSVHRWRN 232

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488932491 258 IVAIVAIVIVSISTATVGVIGFLGLIVPHIAKLLVGSDHKVKLPYTMLLGAVMLLLSDTVGRAMFAPYEIPAAIICAVVG 337
Cdd:COG4139  233 LLVLATGLLVGVSVALAGPIGFVGLVVPHLLRLLGTTDHRFLLPACALAGAALLLLADIIARLALSSAELPIGVVTATLG 312

                        330
                 ....*....|..
gi 488932491 338 GPFFI-LLLRRG 348
Cdd:COG4139  313 APVFIwLLLRRR 324
PRK03784 PRK03784
vtamin B12-transporter permease; Provisional
 37-351 7.81e-38

vtamin B12-transporter permease; Provisional


Pssm-ID: 235159  Cd Length: 331  Bit Score: 138.16  E-value: 7.81e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488932491  37 SVLLILLFFIAIRTGSIDISFSKLMSG---LFVkrnpdvatiWDLRFPRVIIAMLAGAAISTSGALLQSVMKNPLTDPGI 113
Cdd:PRK03784  22 SVLLLLALLLSLCAGEQWISPGDWLSPrgeLFV---------WQLRLPRTLAVLLVGAALAVSGAVMQALFENPLAEPGL 92

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488932491 114 IGISSAASFVAVIISSFFPAM--YFSIPFFAVLGGLAAYLLIYLLAWDGGANPVKLILVGVALNMTFSGLSEFckaSVGK 191
Cdd:PRK03784  93 LGVSNGAGVALVAAVLLGQGLlpPWALSLCAIAGALLITLILLRFARRHRLSTSRLLLAGVALGIICSALMTW---AVYF 169

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488932491 192 GASLSRVQ-------SIVEGNIAQKTWadvnllfWYVLIGLIVAFLL-AKKCNILSLEDKTARGLGVNVDRDRFIVAIVA 263
Cdd:PRK03784 170 STSLDLRQlmywmmgGFGGVDWRQSWL-------MLALLPVLIWLCCqGRPLNMLALGEISARQLGLPLWFWRNLLVLAT 242

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488932491 264 IVIVSISTATVGVIGFLGLIVPHIAKLLVGSDHKVKLPYTMLLGAVMLLLSDTVGRAMFAPYEIPAAIICAVVGGPFFIL 343
Cdd:PRK03784 243 GWLVGVSVALAGAIGFIGLVIPHILRLCGLTDHRVLLPGCALAGASLLLLADIVARLALASAELPIGVVTATLGAPVFIW 322


                 ....*...
gi 488932491 344 LLRRGGDS 351
Cdd:PRK03784 323 LLLRSHRA 330
PRK10440 PRK10440
iron-enterobactin ABC transporter permease;
27-347 2.00e-33

iron-enterobactin ABC transporter permease;


Pssm-ID: 182463  Cd Length: 330  Bit Score: 126.36  E-value: 2.00e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488932491  27 RKKTVVFLTTSVLLILLFFIAIRTGSIDISFSKLMSGLF---VKRNPDVATIWdlRFPRVIIAMLAGAAISTSGALLQSV 103
Cdd:PRK10440   6 RRLLITCLLLLAACVAAGLWGLRSGAVTLETSQVFAALMgdaPRSMTMVVTEW--RLPRVLMALLIGAALGVSGAIFQSL 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488932491 104 MKNPLTDPGIIGISSAASFVAVIISSFFPAMYFSIPFFAVLGGLAAYLLIYLLAWDGGANPVKLILVGVALNMTFSGLSE 183
Cdd:PRK10440  84 MRNPLGSPDVMGFNTGAWSGVLVAMVLFGQDLTAIALAAMAGGIVTSLLVWLLAWRNGIDTFRLIIIGIGVRAMLVAFNT 163

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488932491 184 FCKASvgkgASLSRVQSIV---EGNIAQKTWADVNLLFWYVLIGLIVAFLLAKKCNILSLEDKTARGLGVNVDRDRFIVA 260
Cdd:PRK10440 164 WLLLK----ASLETALTAGlwnAGSLNGLTWAKTSPSAPIIILMLIAAALLVRRMRLLEMGDDTACALGVSVERSRLLLM 239

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488932491 261 IVAIVIVSISTATVGVIGFLGLIVPHIAKLLVGSDhKVKLPYTMLLGAVMLLLSDTVGRAMFAPYEIPAAIICAVVGGPF 340
Cdd:PRK10440 240 LVAVVLTAAATALAGPISFIALVAPHIARRLSGTA-RWGLTQAALCGALLLLAADLCAQQLFMPYQLPVGVVTVSLGGIY 318


                 ....*..
gi 488932491 341 FILLLRR 347
Cdd:PRK10440 319 LIVLLIQ 325
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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