electron transport complex protein RnfA is predicted to be a transmembrane protein that may be involved in mediating electron transport between electron transfer systems in the inner membrane and the cytoplasmic nitrogenase system
Na+-translocating ferredoxin:NAD+ oxidoreductase RNF, RnfA subunit [Energy production and ...
1-191
2.82e-96
Na+-translocating ferredoxin:NAD+ oxidoreductase RNF, RnfA subunit [Energy production and conversion]; Na+-translocating ferredoxin:NAD+ oxidoreductase RNF, RnfA subunit is part of the Pathway/BioSystem: Na+-translocating Fd:NADH oxidoreductase
:
Pssm-ID: 443695 Cd Length: 193 Bit Score: 277.38 E-value: 2.82e-96
Na+-translocating ferredoxin:NAD+ oxidoreductase RNF, RnfA subunit [Energy production and ...
1-191
2.82e-96
Na+-translocating ferredoxin:NAD+ oxidoreductase RNF, RnfA subunit [Energy production and conversion]; Na+-translocating ferredoxin:NAD+ oxidoreductase RNF, RnfA subunit is part of the Pathway/BioSystem: Na+-translocating Fd:NADH oxidoreductase
Pssm-ID: 443695 Cd Length: 193 Bit Score: 277.38 E-value: 2.82e-96
electron transport complex, RnfABCDGE type, A subunit; The six subunit complex RnfABCDGE in ...
1-189
5.24e-76
electron transport complex, RnfABCDGE type, A subunit; The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the A subunit. [Energy metabolism, Electron transport]
Pssm-ID: 130998 Cd Length: 190 Bit Score: 226.08 E-value: 5.24e-76
Rnf-Nqr subunit, membrane protein; This is a family of integral membrane proteins including ...
3-188
6.78e-55
Rnf-Nqr subunit, membrane protein; This is a family of integral membrane proteins including Rhodobacter-specific nitrogen fixation (rnf) proteins RnfA and RnfE and Na+-translocating NADH:ubiquinone oxidoreductase (Na+-NQR) subunits NqrD and NqrE.
Pssm-ID: 460575 Cd Length: 181 Bit Score: 172.22 E-value: 6.78e-55
Na+-translocating ferredoxin:NAD+ oxidoreductase RNF, RnfA subunit [Energy production and ...
1-191
2.82e-96
Na+-translocating ferredoxin:NAD+ oxidoreductase RNF, RnfA subunit [Energy production and conversion]; Na+-translocating ferredoxin:NAD+ oxidoreductase RNF, RnfA subunit is part of the Pathway/BioSystem: Na+-translocating Fd:NADH oxidoreductase
Pssm-ID: 443695 Cd Length: 193 Bit Score: 277.38 E-value: 2.82e-96
electron transport complex, RnfABCDGE type, A subunit; The six subunit complex RnfABCDGE in ...
1-189
5.24e-76
electron transport complex, RnfABCDGE type, A subunit; The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the A subunit. [Energy metabolism, Electron transport]
Pssm-ID: 130998 Cd Length: 190 Bit Score: 226.08 E-value: 5.24e-76
Rnf-Nqr subunit, membrane protein; This is a family of integral membrane proteins including ...
3-188
6.78e-55
Rnf-Nqr subunit, membrane protein; This is a family of integral membrane proteins including Rhodobacter-specific nitrogen fixation (rnf) proteins RnfA and RnfE and Na+-translocating NADH:ubiquinone oxidoreductase (Na+-NQR) subunits NqrD and NqrE.
Pssm-ID: 460575 Cd Length: 181 Bit Score: 172.22 E-value: 6.78e-55
Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrE [Energy production and ...
1-188
3.01e-54
Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrE [Energy production and conversion]; Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrE is part of the Pathway/BioSystem: Na+-translocating NADH dehydrogenase
Pssm-ID: 441811 Cd Length: 202 Bit Score: 171.17 E-value: 3.01e-54
NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit; This model represents the NqrE ...
1-188
2.36e-46
NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit; This model represents the NqrE subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump. [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 130995 Cd Length: 200 Bit Score: 151.07 E-value: 2.36e-46
Na+-translocating ferredoxin:NAD+ oxidoreductase RNF, RnfE subunit [Energy production and ...
14-154
1.79e-25
Na+-translocating ferredoxin:NAD+ oxidoreductase RNF, RnfE subunit [Energy production and conversion]; Na+-translocating ferredoxin:NAD+ oxidoreductase RNF, RnfE subunit is part of the Pathway/BioSystem: Na+-translocating Fd:NADH oxidoreductase
Pssm-ID: 443698 Cd Length: 209 Bit Score: 97.51 E-value: 1.79e-25
electron transport complex, RnfABCDGE type, E subunit; The six subunit complex RnfABCDGE in ...
14-156
1.91e-22
electron transport complex, RnfABCDGE type, E subunit; The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the E subunit. [Energy metabolism, Electron transport]
Pssm-ID: 162619 Cd Length: 196 Bit Score: 89.32 E-value: 1.91e-22
Database: CDSEARCH/cdd Low complexity filter: no Composition Based Adjustment: yes E-value threshold: 0.01
References:
Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
of the residues that compose this conserved feature have been mapped to the query sequence.
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