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Conserved domains on  [gi|488941410|ref|WP_002852485|]
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MULTISPECIES: c-type cytochrome [Campylobacter]

Protein Classification

c-type cytochrome( domain architecture ID 10006741)

c-type cytochrome is an electron carrier protein that contains one or more heme groups; similar to Helicobacter pylori cytochrome c-553 that binds 1 heme and functions as the natural electron acceptor for a formate dehydrogenase

CATH:  1.10.760.10
Gene Ontology:  GO:0020037|GO:0009055|GO:0046872
PubMed:  31252007|22723177|18568041|12594933|10647174|10395550
SCOP:  3000815

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CytC553 COG2863
Cytochrome c553 [Energy production and conversion];
37-112 1.21e-04

Cytochrome c553 [Energy production and conversion];


:

Pssm-ID: 442110 [Multi-domain]  Cd Length: 98  Bit Score: 38.17  E-value: 1.21e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488941410  37 SCKECHGADGSEQILGYYmkngiktaykvPSIQNLSFENFKNSLNQSKDAK---SIMPNY--SLTNDEIVTLYNYIKQFS 111
Cdd:COG2863   24 ACAACHGADGEGNPGGGA-----------PRLAGQHAEYLVAQLKAFRSGArknGVMPAIakGLSDEDIKALAAYIASLK 92


                 .
gi 488941410 112 K 112
Cdd:COG2863   93 A 93
 
Name Accession Description Interval E-value
CytC553 COG2863
Cytochrome c553 [Energy production and conversion];
37-112 1.21e-04

Cytochrome c553 [Energy production and conversion];


Pssm-ID: 442110 [Multi-domain]  Cd Length: 98  Bit Score: 38.17  E-value: 1.21e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488941410  37 SCKECHGADGSEQILGYYmkngiktaykvPSIQNLSFENFKNSLNQSKDAK---SIMPNY--SLTNDEIVTLYNYIKQFS 111
Cdd:COG2863   24 ACAACHGADGEGNPGGGA-----------PRLAGQHAEYLVAQLKAFRSGArknGVMPAIakGLSDEDIKALAAYIASLK 92


                 .
gi 488941410 112 K 112
Cdd:COG2863   93 A 93
Ube1 TIGR01408
ubiquitin-activating enzyme E1; This model represents the full length, over a thousand amino ...
 18-94 4.32e-03

ubiquitin-activating enzyme E1; This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.


Pssm-ID: 273603 [Multi-domain]  Cd Length: 1006  Bit Score: 35.25  E-value: 4.32e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488941410    18 DFITLKEYSKMLYEN---PRGISCKECHG-ADGSEQILGYYMKNGIKTAYKVPSIqnLSFENFKNSLnqsKDAKSIMPNY 93
Cdd:TIGR01408  200 DFVTFREVNGMTGLNdgsPRKITVISPYSfSIGDTTELGPYLHGGIATQVKTPKT--VFFKSLREQL---KDPKCLIVDF 274


                   .
gi 488941410    94 S 94
Cdd:TIGR01408  275 S 275
 
Name Accession Description Interval E-value
CytC553 COG2863
Cytochrome c553 [Energy production and conversion];
37-112 1.21e-04

Cytochrome c553 [Energy production and conversion];


Pssm-ID: 442110 [Multi-domain]  Cd Length: 98  Bit Score: 38.17  E-value: 1.21e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488941410  37 SCKECHGADGSEQILGYYmkngiktaykvPSIQNLSFENFKNSLNQSKDAK---SIMPNY--SLTNDEIVTLYNYIKQFS 111
Cdd:COG2863   24 ACAACHGADGEGNPGGGA-----------PRLAGQHAEYLVAQLKAFRSGArknGVMPAIakGLSDEDIKALAAYIASLK 92


                 .
gi 488941410 112 K 112
Cdd:COG2863   93 A 93
Ube1 TIGR01408
ubiquitin-activating enzyme E1; This model represents the full length, over a thousand amino ...
 18-94 4.32e-03

ubiquitin-activating enzyme E1; This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.


Pssm-ID: 273603 [Multi-domain]  Cd Length: 1006  Bit Score: 35.25  E-value: 4.32e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488941410    18 DFITLKEYSKMLYEN---PRGISCKECHG-ADGSEQILGYYMKNGIKTAYKVPSIqnLSFENFKNSLnqsKDAKSIMPNY 93
Cdd:TIGR01408  200 DFVTFREVNGMTGLNdgsPRKITVISPYSfSIGDTTELGPYLHGGIATQVKTPKT--VFFKSLREQL---KDPKCLIVDF 274


                   .
gi 488941410    94 S 94
Cdd:TIGR01408  275 S 275
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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