|
Name |
Accession |
Description |
Interval |
E-value |
| DnaA |
TIGR00362 |
chromosomal replication initiator protein DnaA; DnaA is involved in DNA biosynthesis; ... |
4-434 |
0e+00 |
|
chromosomal replication initiator protein DnaA; DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273037 [Multi-domain] Cd Length: 437 Bit Score: 529.41 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488942069 4 SQILENLKKELSENEYENYLSNLKFNEkqSKADLLVFNAPNELMAKFIQTKYGKKIAHFYEVQSGNKAIINIQ-----AQ 78
Cdd:TIGR00362 2 NRILERLEKELSEQEYNTWFKPLKLLS--IEGNTLIISVPNEFVKEWIEKNYLDLIEELLQELFGAEIEIEFTvgedeEE 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488942069 79 SAKQSNKSTK--IDIAHIKAQSTILNPSFTFESFVVGDSNKYAYGACKAIAhkDKLGKLYNPIFVYGPTGLGKTHLLQAV 156
Cdd:TIGR00362 80 LEPNSKKPEPapPEAPAPPSSASGLNPKYTFDNFVVGKSNRLAHAAALAVA--ENPGKAYNPLFIYGGVGLGKTHLLHAI 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488942069 157 GNASLEM--GKKVIYATSENFINDFTSNLKNGSLDKFHEKYRNCDVLLIDDVQFLGKTDKIQEEFFFIFNEIKNNDGQII 234
Cdd:TIGR00362 158 GNEILENnpNAKVLYVSSEKFTNDFVNALRNNKMEEFKEKYRSVDLLLIDDIQFLAGKERTQEEFFHTFNALHENNKQIV 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488942069 235 MTSDNPPNMLKGITERLKSRFAHGIIADITPPQLDTKIAIIRKKCEFNDINLSNDIINYIATSLGDNIREIEGIIISLNA 314
Cdd:TIGR00362 238 LTSDRPPKELPGLEDRLRSRFEWGLVVDIEPPDLETRLAILQKKAEEEGLELPDEVLEFIAKNITSNVRELEGALNRLLA 317
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488942069 315 YATILGQEITLELAKSVMKDHIKEKKENITIDDILSLVCKEFNIKPSDVKSNKKTQNIVTARRIVIYLARALTALTMPQL 394
Cdd:TIGR00362 318 YASLTGKPITLELAKEALKDLLRAQKKEITIENIQKVVAKYYNIKVSDLKSKKRTRNIVRPRQIAMYLAKELTDLSLPEI 397
|
410 420 430 440
....*....|....*....|....*....|....*....|
gi 488942069 395 ANYFEMKDHTAISHNVKKITEMIENDGSLKAKIEELKNKI 434
Cdd:TIGR00362 398 GKAFGGRDHTTVLHAVRKIEKLIETDAELKEDIEELKRKL 437
|
|
| dnaA |
PRK00149 |
chromosomal replication initiator protein DnaA; |
4-434 |
0e+00 |
|
chromosomal replication initiator protein DnaA;
Pssm-ID: 234667 [Multi-domain] Cd Length: 401 Bit Score: 524.31 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488942069 4 SQILENLKKELSENEYENYLSNLKFNEkqSKADLLVFNAPNELMAKFIQTKYGKKIAHFYEvqsgnkaiiniqaqsakqs 83
Cdd:PRK00149 7 EKVLERLKDELSEQEYETWIKPLKALS--LEDNTLTLYVPNRFVKDWIEKNYLDLIEEALQ------------------- 65
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488942069 84 nkstkidiahikaqstiLNPSFTFESFVVGDSNKYAYGACKAIAhkDKLGKLYNPIFVYGPTGLGKTHLLQAVGNASLEM 163
Cdd:PRK00149 66 -----------------LNPKYTFDNFVVGKSNRLAHAAALAVA--ENPGKAYNPLFIYGGVGLGKTHLLHAIGNYILEK 126
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488942069 164 --GKKVIYATSENFINDFTSNLKNGSLDKFHEKYRNCDVLLIDDVQFLGKTDKIQEEFFFIFNEIKNNDGQIIMTSDNPP 241
Cdd:PRK00149 127 npNAKVVYVTSEKFTNDFVNALRNNTMEEFKEKYRSVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPP 206
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488942069 242 NMLKGITERLKSRFAHGIIADITPPQLDTKIAIIRKKCEFNDINLSNDIINYIATSLGDNIREIEGIIISLNAYATILGQ 321
Cdd:PRK00149 207 KELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKKKAEEEGIDLPDEVLEFIAKNITSNVRELEGALNRLIAYASLTGK 286
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488942069 322 EITLELAKSVMKDHIKEKKENITIDDILSLVCKEFNIKPSDVKSNKKTQNIVTARRIVIYLARALTALTMPQLANYFEMK 401
Cdd:PRK00149 287 PITLELAKEALKDLLAAQKKKITIENIQKVVAEYYNIKVSDLKSKSRTRNIARPRQIAMYLAKELTDLSLPEIGRAFGGR 366
|
410 420 430
....*....|....*....|....*....|...
gi 488942069 402 DHTAISHNVKKITEMIENDGSLKAKIEELKNKI 434
Cdd:PRK00149 367 DHTTVLHAVRKIEKLLEEDPELKEDVEELKRKL 399
|
|
| DnaA |
COG0593 |
Chromosomal replication initiation ATPase DnaA [Replication, recombination and repair]; |
101-403 |
8.06e-145 |
|
Chromosomal replication initiation ATPase DnaA [Replication, recombination and repair];
Pssm-ID: 440358 [Multi-domain] Cd Length: 303 Bit Score: 414.97 E-value: 8.06e-145
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488942069 101 LNPSFTFESFVVGDSNKYAYGACKAIAhkDKLGKLYNPIFVYGPTGLGKTHLLQAVGNASLEM--GKKVIYATSENFIND 178
Cdd:COG0593 1 LNPRYTFDNFVVGPSNRLAHAAALAVA--EWPGKAYNPLFLYGGVGLGKTHLLHAIGNEALENnpGARVVYLTAEEFTND 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488942069 179 FTSNLKNGSLDKFHEKYRNCDVLLIDDVQFLGKTDKIQEEFFFIFNEIKNNDGQIIMTSDNPPNMLKGITERLKSRFAHG 258
Cdd:COG0593 79 FINAIRNNTIEEFKEKYRSVDVLLIDDIQFLAGKEATQEEFFHTFNALREAGKQIVLTSDRPPKELPGLEERLRSRLEWG 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488942069 259 IIADITPPQLDTKIAIIRKKCEFNDINLSNDIINYIATSLGDNIREIEGIIISLNAYATILGQEITLELAKSVMKDHIKE 338
Cdd:COG0593 159 LVVDIQPPDLETRIAILRKKAADRGLELPDEVLEYLARRIERNVRELEGALNRLDAYALLTGRPITLELAREVLKDLLRA 238
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 488942069 339 KKENITIDDILSLVCKEFNIKPSDVKSNKKTQNIVTARRIVIYLARALTALTMPQLANYFEMKDH 403
Cdd:COG0593 239 QKKEITIEDIQKAVAEYFGVSVADLLSKSRTREIARPRQIAMYLARELTDLSLPEIGRAFGGRDH 303
|
|
| Bac_DnaA |
pfam00308 |
Bacterial dnaA protein; |
101-316 |
3.47e-85 |
|
Bacterial dnaA protein;
Pssm-ID: 278724 [Multi-domain] Cd Length: 219 Bit Score: 259.95 E-value: 3.47e-85
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488942069 101 LNPSFTFESFVVGDSNKYAYGACKAIAhkDKLGKLYNPIFVYGPTGLGKTHLLQAVGNA--SLEMGKKVIYATSENFIND 178
Cdd:pfam00308 1 LNPRYTFENFVIGPSNRFAHAAALTVA--KAPGKAYNPLFIYGGVGLGKTHLLHAIGNYalQNAPNLRVVYLTAEEFLND 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488942069 179 FTSNLKNGSLDKFHEKYRNCDVLLIDDVQFLGKTDKIQEEFFFIFNEIKNNDGQIIMTSDNPPNMLKGITERLKSRFAHG 258
Cdd:pfam00308 79 FVDAIRDNKTNQFKEKYRNVDVLLIDDIQFLAGKEGTQEEFFHTFNALHESGKQIVFSSDRPPKELEELEDRLRSRFQWG 158
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 488942069 259 IIADITPPQLDTKIAIIRKKCEFNDINLSNDIINYIATSLGDNIREIEGIIISLNAYA 316
Cdd:pfam00308 159 LVTDIEPPDLETRLAILRKKAEAEGIEIPPEVLNFIAQRVTDNVRELEGALNRLLAYS 216
|
|
| Bac_DnaA_C |
cd06571 |
C-terminal domain of bacterial DnaA proteins. The DNA-binding C-terminal domain of DnaA ... |
345-434 |
1.44e-32 |
|
C-terminal domain of bacterial DnaA proteins. The DNA-binding C-terminal domain of DnaA contains a helix-turn-helix motif that specifically interacts with the DnaA box, a 9-mer motif that occurs repetitively in the replication origin oriC. Multiple copies of DnaA, which is an ATPase, bind to 9-mers at the origin and form an initial complex in which the DNA strands are being separated in an ATP-dependent step.
Pssm-ID: 119330 [Multi-domain] Cd Length: 90 Bit Score: 118.39 E-value: 1.44e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488942069 345 IDDILSLVCKEFNIKPSDVKSNKKTQNIVTARRIVIYLARALTALTMPQLANYFEMKDHTAISHNVKKITEMIENDGSLK 424
Cdd:cd06571 1 IELIIEAVAEYFGISVEDLRSKSRKKEIALARQIAMYLARELTGLSLPEIGRAFGGRDHSTVLHAVRKIEELLEEDPELK 80
|
90
....*....|
gi 488942069 425 AKIEELKNKI 434
Cdd:cd06571 81 EDVEELEKKL 90
|
|
| Bac_DnaA_C |
smart00760 |
Bacterial dnaA protein helix-turn-helix domain; Could be involved in DNA-binding. |
344-412 |
5.26e-25 |
|
Bacterial dnaA protein helix-turn-helix domain; Could be involved in DNA-binding.
Pssm-ID: 197863 [Multi-domain] Cd Length: 69 Bit Score: 97.19 E-value: 5.26e-25
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 488942069 344 TIDDILSLVCKEFNIKPSDVKSNKKTQNIVTARRIVIYLARALTALTMPQLANYFEMKDHTAISHNVKK 412
Cdd:smart00760 1 TIEEIIEAVAEYFGVKPEDLKSKSRKREIVLARQIAMYLARELTDLSLPEIGKIFGGRDHSTVLHACRK 69
|
|
| IS21_help_AAA |
NF038214 |
IS21-like element helper ATPase IstB; This protein family model resembles PF01695, but was ... |
137-206 |
2.19e-10 |
|
IS21-like element helper ATPase IstB; This protein family model resembles PF01695, but was built to hit full-length AAA+ ATPases of IS21 family IS (insertion sequence) elements.
Pssm-ID: 439516 Cd Length: 232 Bit Score: 60.56 E-value: 2.19e-10
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488942069 137 NPIFVyGPTGLGKTHLLQAVGNASLEMGKKVIYATSENFINDFTSNLKNGSLDKFHEKYRNCDVLLIDDV 206
Cdd:NF038214 92 NVLLL-GPPGTGKTHLAIALGYAACRQGYRVRFTTAADLVEQLAQARADGRLGRLLRRLARYDLLIIDEL 160
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| DnaA |
TIGR00362 |
chromosomal replication initiator protein DnaA; DnaA is involved in DNA biosynthesis; ... |
4-434 |
0e+00 |
|
chromosomal replication initiator protein DnaA; DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273037 [Multi-domain] Cd Length: 437 Bit Score: 529.41 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488942069 4 SQILENLKKELSENEYENYLSNLKFNEkqSKADLLVFNAPNELMAKFIQTKYGKKIAHFYEVQSGNKAIINIQ-----AQ 78
Cdd:TIGR00362 2 NRILERLEKELSEQEYNTWFKPLKLLS--IEGNTLIISVPNEFVKEWIEKNYLDLIEELLQELFGAEIEIEFTvgedeEE 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488942069 79 SAKQSNKSTK--IDIAHIKAQSTILNPSFTFESFVVGDSNKYAYGACKAIAhkDKLGKLYNPIFVYGPTGLGKTHLLQAV 156
Cdd:TIGR00362 80 LEPNSKKPEPapPEAPAPPSSASGLNPKYTFDNFVVGKSNRLAHAAALAVA--ENPGKAYNPLFIYGGVGLGKTHLLHAI 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488942069 157 GNASLEM--GKKVIYATSENFINDFTSNLKNGSLDKFHEKYRNCDVLLIDDVQFLGKTDKIQEEFFFIFNEIKNNDGQII 234
Cdd:TIGR00362 158 GNEILENnpNAKVLYVSSEKFTNDFVNALRNNKMEEFKEKYRSVDLLLIDDIQFLAGKERTQEEFFHTFNALHENNKQIV 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488942069 235 MTSDNPPNMLKGITERLKSRFAHGIIADITPPQLDTKIAIIRKKCEFNDINLSNDIINYIATSLGDNIREIEGIIISLNA 314
Cdd:TIGR00362 238 LTSDRPPKELPGLEDRLRSRFEWGLVVDIEPPDLETRLAILQKKAEEEGLELPDEVLEFIAKNITSNVRELEGALNRLLA 317
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488942069 315 YATILGQEITLELAKSVMKDHIKEKKENITIDDILSLVCKEFNIKPSDVKSNKKTQNIVTARRIVIYLARALTALTMPQL 394
Cdd:TIGR00362 318 YASLTGKPITLELAKEALKDLLRAQKKEITIENIQKVVAKYYNIKVSDLKSKKRTRNIVRPRQIAMYLAKELTDLSLPEI 397
|
410 420 430 440
....*....|....*....|....*....|....*....|
gi 488942069 395 ANYFEMKDHTAISHNVKKITEMIENDGSLKAKIEELKNKI 434
Cdd:TIGR00362 398 GKAFGGRDHTTVLHAVRKIEKLIETDAELKEDIEELKRKL 437
|
|
| dnaA |
PRK00149 |
chromosomal replication initiator protein DnaA; |
4-434 |
0e+00 |
|
chromosomal replication initiator protein DnaA;
Pssm-ID: 234667 [Multi-domain] Cd Length: 401 Bit Score: 524.31 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488942069 4 SQILENLKKELSENEYENYLSNLKFNEkqSKADLLVFNAPNELMAKFIQTKYGKKIAHFYEvqsgnkaiiniqaqsakqs 83
Cdd:PRK00149 7 EKVLERLKDELSEQEYETWIKPLKALS--LEDNTLTLYVPNRFVKDWIEKNYLDLIEEALQ------------------- 65
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488942069 84 nkstkidiahikaqstiLNPSFTFESFVVGDSNKYAYGACKAIAhkDKLGKLYNPIFVYGPTGLGKTHLLQAVGNASLEM 163
Cdd:PRK00149 66 -----------------LNPKYTFDNFVVGKSNRLAHAAALAVA--ENPGKAYNPLFIYGGVGLGKTHLLHAIGNYILEK 126
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488942069 164 --GKKVIYATSENFINDFTSNLKNGSLDKFHEKYRNCDVLLIDDVQFLGKTDKIQEEFFFIFNEIKNNDGQIIMTSDNPP 241
Cdd:PRK00149 127 npNAKVVYVTSEKFTNDFVNALRNNTMEEFKEKYRSVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPP 206
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488942069 242 NMLKGITERLKSRFAHGIIADITPPQLDTKIAIIRKKCEFNDINLSNDIINYIATSLGDNIREIEGIIISLNAYATILGQ 321
Cdd:PRK00149 207 KELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKKKAEEEGIDLPDEVLEFIAKNITSNVRELEGALNRLIAYASLTGK 286
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488942069 322 EITLELAKSVMKDHIKEKKENITIDDILSLVCKEFNIKPSDVKSNKKTQNIVTARRIVIYLARALTALTMPQLANYFEMK 401
Cdd:PRK00149 287 PITLELAKEALKDLLAAQKKKITIENIQKVVAEYYNIKVSDLKSKSRTRNIARPRQIAMYLAKELTDLSLPEIGRAFGGR 366
|
410 420 430
....*....|....*....|....*....|...
gi 488942069 402 DHTAISHNVKKITEMIENDGSLKAKIEELKNKI 434
Cdd:PRK00149 367 DHTTVLHAVRKIEKLLEEDPELKEDVEELKRKL 399
|
|
| DnaA |
COG0593 |
Chromosomal replication initiation ATPase DnaA [Replication, recombination and repair]; |
101-403 |
8.06e-145 |
|
Chromosomal replication initiation ATPase DnaA [Replication, recombination and repair];
Pssm-ID: 440358 [Multi-domain] Cd Length: 303 Bit Score: 414.97 E-value: 8.06e-145
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488942069 101 LNPSFTFESFVVGDSNKYAYGACKAIAhkDKLGKLYNPIFVYGPTGLGKTHLLQAVGNASLEM--GKKVIYATSENFIND 178
Cdd:COG0593 1 LNPRYTFDNFVVGPSNRLAHAAALAVA--EWPGKAYNPLFLYGGVGLGKTHLLHAIGNEALENnpGARVVYLTAEEFTND 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488942069 179 FTSNLKNGSLDKFHEKYRNCDVLLIDDVQFLGKTDKIQEEFFFIFNEIKNNDGQIIMTSDNPPNMLKGITERLKSRFAHG 258
Cdd:COG0593 79 FINAIRNNTIEEFKEKYRSVDVLLIDDIQFLAGKEATQEEFFHTFNALREAGKQIVLTSDRPPKELPGLEERLRSRLEWG 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488942069 259 IIADITPPQLDTKIAIIRKKCEFNDINLSNDIINYIATSLGDNIREIEGIIISLNAYATILGQEITLELAKSVMKDHIKE 338
Cdd:COG0593 159 LVVDIQPPDLETRIAILRKKAADRGLELPDEVLEYLARRIERNVRELEGALNRLDAYALLTGRPITLELAREVLKDLLRA 238
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 488942069 339 KKENITIDDILSLVCKEFNIKPSDVKSNKKTQNIVTARRIVIYLARALTALTMPQLANYFEMKDH 403
Cdd:COG0593 239 QKKEITIEDIQKAVAEYFGVSVADLLSKSRTREIARPRQIAMYLARELTDLSLPEIGRAFGGRDH 303
|
|
| dnaA |
PRK14086 |
chromosomal replication initiator protein DnaA; |
101-434 |
2.52e-97 |
|
chromosomal replication initiator protein DnaA;
Pssm-ID: 237605 [Multi-domain] Cd Length: 617 Bit Score: 304.44 E-value: 2.52e-97
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488942069 101 LNPSFTFESFVVGDSNKYAYGACKAIAhkDKLGKLYNPIFVYGPTGLGKTHLLQAVGN--ASLEMGKKVIYATSENFIND 178
Cdd:PRK14086 281 LNPKYTFDTFVIGASNRFAHAAAVAVA--EAPAKAYNPLFIYGESGLGKTHLLHAIGHyaRRLYPGTRVRYVSSEEFTNE 358
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488942069 179 FTSNLKNGSLDKFHEKYRNCDVLLIDDVQFLGKTDKIQEEFFFIFNEIKNNDGQIIMTSDNPPNMLKGITERLKSRFAHG 258
Cdd:PRK14086 359 FINSIRDGKGDSFRRRYREMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWG 438
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488942069 259 IIADITPPQLDTKIAIIRKKCEFNDINLSNDIINYIATSLGDNIREIEGIIISLNAYATILGQEITLELAKSVMKDHIKE 338
Cdd:PRK14086 439 LITDVQPPELETRIAILRKKAVQEQLNAPPEVLEFIASRISRNIRELEGALIRVTAFASLNRQPVDLGLTEIVLRDLIPE 518
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488942069 339 KKE-NITIDDILSLVCKEFNIKPSDVKSNKKTQNIVTARRIVIYLARALTALTMPQLANYFEmKDHTAISHNVKKITEMI 417
Cdd:PRK14086 519 DSApEITAAAIMAATADYFGLTVEDLCGTSRSRVLVTARQIAMYLCRELTDLSLPKIGQQFG-RDHTTVMHADRKIRALM 597
|
330
....*....|....*..
gi 488942069 418 ENDGSLKAKIEELKNKI 434
Cdd:PRK14086 598 AERRSIYNQVTELTNRI 614
|
|
| Bac_DnaA |
pfam00308 |
Bacterial dnaA protein; |
101-316 |
3.47e-85 |
|
Bacterial dnaA protein;
Pssm-ID: 278724 [Multi-domain] Cd Length: 219 Bit Score: 259.95 E-value: 3.47e-85
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488942069 101 LNPSFTFESFVVGDSNKYAYGACKAIAhkDKLGKLYNPIFVYGPTGLGKTHLLQAVGNA--SLEMGKKVIYATSENFIND 178
Cdd:pfam00308 1 LNPRYTFENFVIGPSNRFAHAAALTVA--KAPGKAYNPLFIYGGVGLGKTHLLHAIGNYalQNAPNLRVVYLTAEEFLND 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488942069 179 FTSNLKNGSLDKFHEKYRNCDVLLIDDVQFLGKTDKIQEEFFFIFNEIKNNDGQIIMTSDNPPNMLKGITERLKSRFAHG 258
Cdd:pfam00308 79 FVDAIRDNKTNQFKEKYRNVDVLLIDDIQFLAGKEGTQEEFFHTFNALHESGKQIVFSSDRPPKELEELEDRLRSRFQWG 158
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 488942069 259 IIADITPPQLDTKIAIIRKKCEFNDINLSNDIINYIATSLGDNIREIEGIIISLNAYA 316
Cdd:pfam00308 159 LVTDIEPPDLETRLAILRKKAEAEGIEIPPEVLNFIAQRVTDNVRELEGALNRLLAYS 216
|
|
| PRK12422 |
PRK12422 |
chromosomal replication initiator protein DnaA; |
77-421 |
1.36e-51 |
|
chromosomal replication initiator protein DnaA;
Pssm-ID: 183521 [Multi-domain] Cd Length: 445 Bit Score: 180.03 E-value: 1.36e-51
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488942069 77 AQSAKQSNKSTKIDIAHIKAQSTILNPSFTFESFVVGDSNKYAYGACKAIAHKDKLGK--LYNPIFVYGPTGLGKTHLLQ 154
Cdd:PRK12422 80 STPFKKEKQIQQEKTAYFTMKYGELDPLMTFANFLVTPENDLPHRILQEFTKVSEQGKgfPFNPIYLFGPEGSGKTHLMQ 159
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488942069 155 AVGNASLEMGKKVIYATSENFINDFTSNLKNGSLDKFHEKYRNCDVLLIDDVQFLGKTDKIQEEFFFIFNEIKNNDGQII 234
Cdd:PRK12422 160 AAVHALRESGGKILYVRSELFTEHLVSAIRSGEMQRFRQFYRNVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIV 239
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488942069 235 MTSDNPPNMLKGITERLKSRFAHGIIADITP-PQLDTKIAIIRKKCEFnDINLSNDIINYIATSLGDNIREIEGIIISLN 313
Cdd:PRK12422 240 ISSTCAPQDLKAMEERLISRFEWGIAIPLHPlTKEGLRSFLERKAEAL-SIRIEETALDFLIEALSSNVKSLLHALTLLA 318
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488942069 314 ---AYATILGQEITLELAKSVMKDHI-KEKKENITIDDILSLVCKEFNIKPSDVKSNKKTQNIVTARRIVIYLARALTAL 389
Cdd:PRK12422 319 krvAYKKLSHQLLYVDDIKALLHDVLeAAESVRLTPSKIIRAVAQYYGVSPESILGRSQSREYVLPRQVAMYLCRQKLSL 398
|
330 340 350
....*....|....*....|....*....|..
gi 488942069 390 TMPQLANYFEmKDHTAISHNVKKITEMIENDG 421
Cdd:PRK12422 399 SYVKIGDVFS-RDHSTVISSIRAISQKLEEDD 429
|
|
| Bac_DnaA_C |
cd06571 |
C-terminal domain of bacterial DnaA proteins. The DNA-binding C-terminal domain of DnaA ... |
345-434 |
1.44e-32 |
|
C-terminal domain of bacterial DnaA proteins. The DNA-binding C-terminal domain of DnaA contains a helix-turn-helix motif that specifically interacts with the DnaA box, a 9-mer motif that occurs repetitively in the replication origin oriC. Multiple copies of DnaA, which is an ATPase, bind to 9-mers at the origin and form an initial complex in which the DNA strands are being separated in an ATP-dependent step.
Pssm-ID: 119330 [Multi-domain] Cd Length: 90 Bit Score: 118.39 E-value: 1.44e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488942069 345 IDDILSLVCKEFNIKPSDVKSNKKTQNIVTARRIVIYLARALTALTMPQLANYFEMKDHTAISHNVKKITEMIENDGSLK 424
Cdd:cd06571 1 IELIIEAVAEYFGISVEDLRSKSRKKEIALARQIAMYLARELTGLSLPEIGRAFGGRDHSTVLHAVRKIEELLEEDPELK 80
|
90
....*....|
gi 488942069 425 AKIEELKNKI 434
Cdd:cd06571 81 EDVEELEKKL 90
|
|
| Bac_DnaA_C |
smart00760 |
Bacterial dnaA protein helix-turn-helix domain; Could be involved in DNA-binding. |
344-412 |
5.26e-25 |
|
Bacterial dnaA protein helix-turn-helix domain; Could be involved in DNA-binding.
Pssm-ID: 197863 [Multi-domain] Cd Length: 69 Bit Score: 97.19 E-value: 5.26e-25
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 488942069 344 TIDDILSLVCKEFNIKPSDVKSNKKTQNIVTARRIVIYLARALTALTMPQLANYFEMKDHTAISHNVKK 412
Cdd:smart00760 1 TIEEIIEAVAEYFGVKPEDLKSKSRKREIVLARQIAMYLARELTDLSLPEIGKIFGGRDHSTVLHACRK 69
|
|
| Bac_DnaA_C |
pfam08299 |
Bacterial dnaA protein helix-turn-helix; |
345-413 |
1.55e-23 |
|
Bacterial dnaA protein helix-turn-helix;
Pssm-ID: 462419 [Multi-domain] Cd Length: 69 Bit Score: 93.24 E-value: 1.55e-23
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 488942069 345 IDDILSLVCKEFNIKPSDVKSNKKTQNIVTARRIVIYLARALTALTMPQLANYFEMKDHTAISHNVKKI 413
Cdd:pfam08299 1 IEKIIEAVAEYFGISPEDLKSKSRKREIALARQIAMYLARELTDLSLPEIGRAFGGRDHSTVIHACKKI 69
|
|
| DnaA_homol_Hda |
TIGR03420 |
DnaA regulatory inactivator Hda; Members of this protein family are Hda (Homologous to DnaA). ... |
106-333 |
1.27e-21 |
|
DnaA regulatory inactivator Hda; Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP. [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 274571 [Multi-domain] Cd Length: 226 Bit Score: 93.02 E-value: 1.27e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488942069 106 TFESFVVGdSNKYAYGACKAIAHkdklGKLYNPIFVYGPTGLGKTHLLQAVGNASLEMGKKVIYaTSENFINDFTSNLKN 185
Cdd:TIGR03420 13 TFDNFYAG-GNAELLAALRQLAA----GKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIY-LPLAELAQADPEVLE 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488942069 186 GSldkfhekyRNCDVLLIDDVQFLGKTDKIQEEFFFIFNEIKNNDGQIIMTSDNPPNMLKGITERLKSRFAHGIIADITP 265
Cdd:TIGR03420 87 GL--------EQADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWGLVFQLPP 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 488942069 266 PQLDTKIAIIRKKCEFNDINLSNDIINYIATSLGDNIREIEGIIISLNAYATILGQEITLELAKSVMK 333
Cdd:TIGR03420 159 LSDEEKIAALQSRAARRGLQLPDEVADYLLRHGSRDMGSLMALLDALDRASLAAKRKITIPFVKEVLA 226
|
|
| PRK08903 |
PRK08903 |
DnaA regulatory inactivator Hda; Validated |
106-334 |
2.35e-17 |
|
DnaA regulatory inactivator Hda; Validated
Pssm-ID: 236347 [Multi-domain] Cd Length: 227 Bit Score: 80.79 E-value: 2.35e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488942069 106 TFESFVVGdSNKYAYGACKAIAHKDKLGKLynpIFVYGPTGLGKTHLLQAVGNASLEMGKKVIYATSENFINDFTSNlkn 185
Cdd:PRK08903 16 TFDNFVAG-ENAELVARLRELAAGPVADRF---FYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPLLAFDFD--- 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488942069 186 gsldkfhekyRNCDVLLIDDVQFLGKTDKIQeeFFFIFNEIKNN-DGQIIMTSDNPPNMLKgITERLKSRFAHGIIADIT 264
Cdd:PRK08903 89 ----------PEAELYAVDDVERLDDAQQIA--LFNLFNRVRAHgQGALLVAGPAAPLALP-LREDLRTRLGWGLVYELK 155
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488942069 265 PPQLDTKIAIIRKKCEFNDINLSNDIINYIATSLGDNIREIEGIIISLNAYATILGQEITLELAKSVMKD 334
Cdd:PRK08903 156 PLSDADKIAALKAAAAERGLQLADEVPDYLLTHFRRDMPSLMALLDALDRYSLEQKRPVTLPLLREMLAQ 225
|
|
| DnaC |
COG1484 |
DNA replication protein DnaC [Replication, recombination and repair]; |
139-225 |
3.38e-14 |
|
DNA replication protein DnaC [Replication, recombination and repair];
Pssm-ID: 441093 [Multi-domain] Cd Length: 242 Bit Score: 71.74 E-value: 3.38e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488942069 139 IFVYGPTGLGKTHLLQAVGNASLEMGKKVIYATSENFINDFTSNLKNGSLDKFHEKYRNCDVLLIDDVQFLGKTDKIQEE 218
Cdd:COG1484 102 LILLGPPGTGKTHLAIALGHEACRAGYRVRFTTAPDLVNELKEARADGRLERLLKRLAKVDLLILDELGYLPLDAEGAEL 181
|
....*..
gi 488942069 219 FFFIFNE 225
Cdd:COG1484 182 LFELISD 188
|
|
| PRK06835 |
PRK06835 |
DNA replication protein DnaC; Validated |
139-254 |
9.90e-14 |
|
DNA replication protein DnaC; Validated
Pssm-ID: 235871 [Multi-domain] Cd Length: 329 Bit Score: 71.85 E-value: 9.90e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488942069 139 IFVYGPTGLGKTHLLQAVGNASLEMGKKVIYATSENFINDFTSN-LKNGSLDKFHEKY-RNCDVLLIDDvqfLGkTDKIQ 216
Cdd:PRK06835 186 LLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIrFNNDKELEEVYDLlINCDLLIIDD---LG-TEKIT 261
|
90 100 110 120
....*....|....*....|....*....|....*....|...
gi 488942069 217 E----EFFFIFNE-IKNNDGQIIMTSDNPPNMLKGITERLKSR 254
Cdd:PRK06835 262 EfsksELFNLINKrLLRQKKMIISTNLSLEELLKTYSERISSR 304
|
|
| AAA |
cd00009 |
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ... |
136-255 |
2.03e-13 |
|
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Pssm-ID: 99707 [Multi-domain] Cd Length: 151 Bit Score: 67.56 E-value: 2.03e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488942069 136 YNPIFVYGPTGLGKTHLLQAVGNASLEMGKKVIYATSENFIN----DFTSNLKNGSLDKFHEKYRNCDVLLIDDVQFLGK 211
Cdd:cd00009 19 PKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEglvvAELFGHFLVRLLFELAEKAKPGVLFIDEIDSLSR 98
|
90 100 110 120
....*....|....*....|....*....|....*....|....*..
gi 488942069 212 -TDKIQEEFFFIFNE--IKNNDGQIIMTSdNPPNMLKgITERLKSRF 255
Cdd:cd00009 99 gAQNALLRVLETLNDlrIDRENVRVIGAT-NRPLLGD-LDRALYDRL 143
|
|
| IS21_help_AAA |
NF038214 |
IS21-like element helper ATPase IstB; This protein family model resembles PF01695, but was ... |
137-206 |
2.19e-10 |
|
IS21-like element helper ATPase IstB; This protein family model resembles PF01695, but was built to hit full-length AAA+ ATPases of IS21 family IS (insertion sequence) elements.
Pssm-ID: 439516 Cd Length: 232 Bit Score: 60.56 E-value: 2.19e-10
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488942069 137 NPIFVyGPTGLGKTHLLQAVGNASLEMGKKVIYATSENFINDFTSNLKNGSLDKFHEKYRNCDVLLIDDV 206
Cdd:NF038214 92 NVLLL-GPPGTGKTHLAIALGYAACRQGYRVRFTTAADLVEQLAQARADGRLGRLLRRLARYDLLIIDEL 160
|
|
| PRK08116 |
PRK08116 |
hypothetical protein; Validated |
75-254 |
8.68e-10 |
|
hypothetical protein; Validated
Pssm-ID: 236153 [Multi-domain] Cd Length: 268 Bit Score: 59.26 E-value: 8.68e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488942069 75 IQAQSAKQSNKSTKIDIAHIKAQStILNPSF---TFESFVVGDSNKYAYGACKAIA------HKDKLGKLYnpifvYGPT 145
Cdd:PRK08116 50 EEAKEREEENREKQRRIERLKSNS-LLDEKFrnsTFENFLFDKGSEKAYKIARKYVkkfeemKKENVGLLL-----WGSV 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488942069 146 GLGKTHLLQAVGNASLEMGKKVIYATSENFINDFTSNLKNGSLDKFHE---KYRNCDVLLIDDVQFLGKTDKIQEEFFFI 222
Cdd:PRK08116 124 GTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEiirSLVNADLLILDDLGAERDTEWAREKVYNI 203
|
170 180 190
....*....|....*....|....*....|...
gi 488942069 223 FNEIKNNDGQIIMTSDNPPNMLK-GITERLKSR 254
Cdd:PRK08116 204 IDSRYRKGLPTIVTTNLSLEELKnQYGKRIYDR 236
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
137-254 |
8.11e-09 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 54.30 E-value: 8.11e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488942069 137 NPIFVYGPTGLGKTHLLQAVGNASLEMGKKVIYATSENFINDFTSNLKNGSLDKFHE---------------KYRNCDVL 201
Cdd:smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKAsgsgelrlrlalalaRKLKPDVL 82
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*...
gi 488942069 202 LIDDVQFLGKTDKIQEEFF-----FIFNEIKNNDGQIIMTSDNPPNMLKGITERLKSR 254
Cdd:smart00382 83 ILDEITSLLDAEQEALLLLleelrLLLLLKSEKNLTVILTTNDEKDLGPALLRRRFDR 140
|
|
| PRK08181 |
PRK08181 |
transposase; Validated |
101-278 |
2.81e-06 |
|
transposase; Validated
Pssm-ID: 136670 [Multi-domain] Cd Length: 269 Bit Score: 48.77 E-value: 2.81e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488942069 101 LNPSFTFESFVVGDSNKYAYGACKAIAHKDK-LGKLYNpIFVYGPTGLGKTHLLQAVGNASLEMGKKVIYATSENFINDF 179
Cdd:PRK08181 71 LPPGKTLDSFDFEAVPMVSKAQVMAIAAGDSwLAKGAN-LLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKL 149
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488942069 180 TSNLKNGSLDKFHEKYRNCDVLLIDDVQFLGKtDKIQEEFFFIFNEIKNNDGQIIMTSDNP----------PNMLKGITE 249
Cdd:PRK08181 150 QVARRELQLESAIAKLDKFDLLILDDLAYVTK-DQAETSVLFELISARYERRSILITANQPfgewnrvfpdPAMTLAAVD 228
|
170 180
....*....|....*....|....*....
gi 488942069 250 RLksrFAHGIIADITPPQLDTKIAIIRKK 278
Cdd:PRK08181 229 RL---VHHATIFEMNVESYRRRTALERKR 254
|
|
| IstB_IS21 |
pfam01695 |
IstB-like ATP binding protein; This protein contains an ATP/GTP binding P-loop motif. It is ... |
139-240 |
3.04e-06 |
|
IstB-like ATP binding protein; This protein contains an ATP/GTP binding P-loop motif. It is found associated with IS21 family insertion sequences. The function of this protein is unknown, but it may perform a transposase function.
Pssm-ID: 426385 [Multi-domain] Cd Length: 238 Bit Score: 48.21 E-value: 3.04e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488942069 139 IFVYGPTGLGKTHLLQAVGNASLEMGKKVIYATSENFINDFTSNLKNGSLDKFHEKYRNCDVLLIDDVQFLgKTDKIQEE 218
Cdd:pfam01695 95 VVLLGPPGVGKTHLAIALGVEACRAGYSVRFTSAADLVNQLKRAHGDGKLTRKLQQLLKPDVLILDEWGYL-PLDQAEAN 173
|
90 100
....*....|....*....|..
gi 488942069 219 FFFIFNEIKNNDGQIIMTSDNP 240
Cdd:pfam01695 174 LLFQVISKRYEHRSIILTSNLP 195
|
|
| PRK12377 |
PRK12377 |
putative replication protein; Provisional |
101-206 |
5.84e-06 |
|
putative replication protein; Provisional
Pssm-ID: 183482 [Multi-domain] Cd Length: 248 Bit Score: 47.52 E-value: 5.84e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488942069 101 LNPSFTFESFVV-GDSNKYAYGACKAIAhkDKLGKLYNPIFVYGPTGLGKTHLLQAVGNASLEMGKKVIYATsenfINDF 179
Cdd:PRK12377 67 LHRKCSFANYQVqNDGQRYALSQAKSIA--DELMTGCTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVT----VPDV 140
|
90 100 110
....*....|....*....|....*....|..
gi 488942069 180 TSNLKNG-----SLDKFHEKYRNCDVLLIDDV 206
Cdd:PRK12377 141 MSRLHESydngqSGEKFLQELCKVDLLVLDEI 172
|
|
| PRK09183 |
PRK09183 |
transposase/IS protein; Provisional |
139-240 |
1.83e-04 |
|
transposase/IS protein; Provisional
Pssm-ID: 181681 Cd Length: 259 Bit Score: 43.16 E-value: 1.83e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488942069 139 IFVYGPTGLGKTHLLQAVGNASLEMGKKVIYATSENFINDFTSNLKNGSLDKFHEK----YRncdVLLIDDVQFLGKTdk 214
Cdd:PRK09183 105 IVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRgvmaPR---LLIIDEIGYLPFS-- 179
|
90 100
....*....|....*....|....*...
gi 488942069 215 iQEEFFFIFNEIKN--NDGQIIMTSDNP 240
Cdd:PRK09183 180 -QEEANLFFQVIAKryEKGSMILTSNLP 206
|
|
| RNA_helicase |
pfam00910 |
RNA helicase; This family includes RNA helicases thought to be involved in duplex unwinding ... |
139-243 |
2.68e-04 |
|
RNA helicase; This family includes RNA helicases thought to be involved in duplex unwinding during viral RNA replication. Members of this family are found in a variety of single stranded RNA viruses.
Pssm-ID: 459992 Cd Length: 102 Bit Score: 39.90 E-value: 2.68e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488942069 139 IFVYGPTGLGKTHLLQAVGNA---SLEMGKKVIYAtsenfindftsnlkNGSLDKFHEKYRNCDVLLIDDvqfLGKTDKI 215
Cdd:pfam00910 1 IWLYGPPGCGKSTLAKYLARAllkKLGLPKDSVYS--------------RNPDDDFWDGYTGQPVVIIDD---FGQNPDG 63
|
90 100
....*....|....*....|....*...
gi 488942069 216 QEEFFFIfneiknndgQIIMTSDNPPNM 243
Cdd:pfam00910 64 PDEAELI---------RLVSSTPYPPPM 82
|
|
| PRK06620 |
PRK06620 |
hypothetical protein; Validated |
108-333 |
3.77e-04 |
|
hypothetical protein; Validated
Pssm-ID: 168630 Cd Length: 214 Bit Score: 41.75 E-value: 3.77e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488942069 108 ESFVVGDSNKYAYGACKAIAHKDKLGKLYNPIFVYGPTGLGKTHLL---QAVGNAslemgkkviYATSENFINDftsnlk 184
Cdd:PRK06620 16 DEFIVSSSNDQAYNIIKNWQCGFGVNPYKFTLLIKGPSSSGKTYLTkiwQNLSNA---------YIIKDIFFNE------ 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488942069 185 ngsldKFHEKYRNCDVLLIDDVQflgktdkiQEEFFFIFNEIKNNDGQIIMTSDNPPN--MLKGITERLKSRFAhgiIAD 262
Cdd:PRK06620 81 -----EILEKYNAFIIEDIENWQ--------EPALLHIFNIINEKQKYLLLTSSDKSRnfTLPDLSSRIKSVLS---ILL 144
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 488942069 263 ITPPQLDTKIaIIRKKCEFNDINLSNDIINYIATSLGDNIREIEGIIISLNAYATILGQEITLELAKSVMK 333
Cdd:PRK06620 145 NSPDDELIKI-LIFKHFSISSVTISRQIIDFLLVNLPREYSKIIEILENINYFALISKRKITISLVKEVLN 214
|
|
| PRK08939 |
PRK08939 |
primosomal protein DnaI; Reviewed |
117-206 |
4.20e-04 |
|
primosomal protein DnaI; Reviewed
Pssm-ID: 236353 [Multi-domain] Cd Length: 306 Bit Score: 42.16 E-value: 4.20e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488942069 117 KYAYGACKAIAHKDKLGKLYnpifVYGPTGLGKTHLLQAVGNASLEMGKKVIYATSENFINDFTSNLKNGSLDKFHEKYR 196
Cdd:PRK08939 141 MAALDFLEAYPPGEKVKGLY----LYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNSISDGSVKEKIDAVK 216
|
90
....*....|
gi 488942069 197 NCDVLLIDDV 206
Cdd:PRK08939 217 EAPVLMLDDI 226
|
|
| ATPase_2 |
pfam01637 |
ATPase domain predominantly from Archaea; This family contain a conserved P-loop motif that is ... |
136-214 |
1.00e-03 |
|
ATPase domain predominantly from Archaea; This family contain a conserved P-loop motif that is involved in binding ATP. There are eukaryote members as well as archaeal members in this family.
Pssm-ID: 376582 [Multi-domain] Cd Length: 222 Bit Score: 40.38 E-value: 1.00e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488942069 136 YNPIFVYGPTGLGKTHLLQAVGNASLEMGKKVIYATseNFINDFTSNLKNGSLDKFHEKYRNCD---------------- 199
Cdd:pfam01637 20 NLIYVIYGPEGCGKTALLRESIENLLDLGYYVIYYD--PLRRYFISKLDRFEEVRRLAEALGIAvpkaeleesklaflai 97
|
90 100
....*....|....*....|....*....
gi 488942069 200 --------------VLLIDDVQFLGKTDK 214
Cdd:pfam01637 98 elllealkrrgkkiAIIIDEVQQAIGLNG 126
|
|
| AAA_22 |
pfam13401 |
AAA domain; |
139-235 |
1.15e-03 |
|
AAA domain;
Pssm-ID: 379165 [Multi-domain] Cd Length: 129 Bit Score: 38.86 E-value: 1.15e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488942069 139 IFVYGPTGLGKTHLLQAVGNASLEMGKKVIYA------TSENFINDFTSNL---KNGSLDKFH---------EKYRNCDV 200
Cdd:pfam13401 8 LVLTGESGTGKTTLLRRLLEQLPEVRDSVVFVdlpsgtSPKDLLRALLRALglpLSGRLSKEEllaalqqllLALAVAVV 87
|
90 100 110
....*....|....*....|....*....|....*
gi 488942069 201 LLIDDVQFLgkTDKIQEEFFFIFNeIKNNDGQIIM 235
Cdd:pfam13401 88 LIIDEAQHL--SLEALEELRDLLN-LSSKLLQLIL 119
|
|
| PRK06921 |
PRK06921 |
hypothetical protein; Provisional |
137-254 |
5.35e-03 |
|
hypothetical protein; Provisional
Pssm-ID: 180750 [Multi-domain] Cd Length: 266 Bit Score: 38.61 E-value: 5.35e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488942069 137 NPIFVYGPTGLGKTHLLQAVGNASL-EMGKKVIYATsenFINDFTsNLKNgSLDKFHEK---YRNCDVLLIDDV--QFLG 210
Cdd:PRK06921 118 NSIALLGQPGSGKTHLLTAAANELMrKKGVPVLYFP---FVEGFG-DLKD-DFDLLEAKlnrMKKVEVLFIDDLfkPVNG 192
|
90 100 110 120
....*....|....*....|....*....|....*....|....*..
gi 488942069 211 K---TDKIQEEFFFIFNEIKNNDGQIIMTSDNPPNMLKGITERLKSR 254
Cdd:PRK06921 193 KpraTEWQIEQMYSVLNYRYLNHKPILISSELTIDELLDIDEALGSR 239
|
|
| |
