|
Name |
Accession |
Description |
Interval |
E-value |
| PRK13342 |
PRK13342 |
recombination factor protein RarA; Reviewed |
3-393 |
0e+00 |
|
recombination factor protein RarA; Reviewed
Pssm-ID: 237355 [Multi-domain] Cd Length: 413 Bit Score: 513.48 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488943260 3 LALTFRPENFDDILGQYELIE---IFKKFTALQKLPHSIFFGTAGSGKTTFARVVAKEFGLDFYEFDGGNFKLEELRKIL 79
Cdd:PRK13342 2 LAERMRPKTLDEVVGQEHLLGpgkPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTSGVKDLREVI 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488943260 80 DNYKNSL---YKPLIFIDEIHRLSKTQQEMLLIPMENYRLILIGASTENPYFVLSSGIRSRSMLFEFKSLGVKELETLLL 156
Cdd:PRK13342 82 EEARQRRsagRRTILFIDEIHRFNKAQQDALLPHVEDGTITLIGATTENPSFEVNPALLSRAQVFELKPLSEEDIEQLLK 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488943260 157 RVQ---EKMKFSIDKEAKDFLLKSA--DARAMLNLLEFVLVLDEkHISLENLKKLRNTISSEGVSSKDTHYILASAMIKS 231
Cdd:PRK13342 162 RALedkERGLVELDDEALDALARLAngDARRALNLLELAALGVD-SITLELLEEALQKRAARYDKDGDEHYDLISALHKS 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488943260 232 LRGSDVDAAIYYLARLIDAGESADFIARRLVIFSSEDVGNADPNALNLAVSTLEAVKNIGYPEARIILAQCVVYLASTIK 311
Cdd:PRK13342 241 IRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIGLADPNALQVAVAAADAVERIGMPEGRIALAQAVIYLALAPK 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488943260 312 SNASYKAINEALNYVKNNEALEIPNYLNNNHQE-------KQNYLYPHDF-GGWVKQKYLSKNLK---FYHSKGLGEEAK 380
Cdd:PRK13342 321 SNAAYTAINAALADVREGGSLPVPLHLRNAPTKlmkelgyGKGYKYPHDYpNGYVGQQYLPDELKgkrYYEPTERGFEKK 400
|
410
....*....|...
gi 488943260 381 LLDNLYKLKNHKA 393
Cdd:PRK13342 401 IKERLEKLKDKNR 413
|
|
| RarA |
COG2256 |
Replication-associated recombination protein RarA (DNA-dependent ATPase) [Replication, ... |
8-393 |
9.42e-144 |
|
Replication-associated recombination protein RarA (DNA-dependent ATPase) [Replication, recombination and repair];
Pssm-ID: 441857 [Multi-domain] Cd Length: 439 Bit Score: 415.61 E-value: 9.42e-144
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488943260 8 RPENFDDILGQ----------YELIEifkkftalQKLPHS-IFFGTAGSGKTTFARVVAKEFGLDFYEFDGGNFKLEELR 76
Cdd:COG2256 20 RPRTLDEVVGQehllgpgkplRRAIE--------AGRLSSmILWGPPGTGKTTLARLIANATDAEFVALSAVTSGVKDIR 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488943260 77 KILDNYKNSLY---KPLIFIDEIHRLSKTQQEMLLIPMENYRLILIGASTENPYFVLSSGIRSRSMLFEFKSLGVKELET 153
Cdd:COG2256 92 EVIEEARERRAygrRTILFVDEIHRFNKAQQDALLPHVEDGTITLIGATTENPSFEVNSALLSRCRVFVLKPLSEEDLEQ 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488943260 154 LLLRVQE-------KMKFSIDKEAKDFLLKSA--DARAMLNLLEFVLVL----DEKHISLENLKKLrntISSEGVS---S 217
Cdd:COG2256 172 LLERALAdderglgGYKLELDDEALEALARLAdgDARRALNALELAVLSappdGVIEITLELVEEA---LQRRALRydkD 248
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488943260 218 KDTHYILASAMIKSLRGSDVDAAIYYLARLIDAGESADFIARRLVIFSSEDVGNADPNALNLAVSTLEAVKNIGYPEARI 297
Cdd:COG2256 249 GDEHYDLISAFIKSIRGSDPDAALYWLARMLEAGEDPRFIARRLVIMASEDIGLADPQALQIAVAAAQAVERLGMPEGRI 328
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488943260 298 ILAQCVVYLASTIKSNASYKAINEALNYVKNNEALEIPNYLNNNHQE-------KQNYLYPHDF-GGWVKQKYLSKNLK- 368
Cdd:COG2256 329 ALAQAVIYLATAPKSNAAYLAINAALADVREGGSLPVPLHLRNAPTKlmkelgyGKGYKYPHDYpGGYVGQQYLPDELKg 408
|
410 420
....*....|....*....|....*..
gi 488943260 369 --FYHSKGLGEEAKLLDNLYKLKNHKA 393
Cdd:COG2256 409 rrYYEPTERGFERKIKERLEKLRKLRR 435
|
|
| PRK13341 |
PRK13341 |
AAA family ATPase; |
3-385 |
1.19e-96 |
|
AAA family ATPase;
Pssm-ID: 237354 [Multi-domain] Cd Length: 725 Bit Score: 303.51 E-value: 1.19e-96
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488943260 3 LALTFRPENFDDILGQYELI---EIFKKFTALQKLPHSIFFGTAGSGKTTFARVVAKEFGLDFYEFDGGNFKLEELRKIL 79
Cdd:PRK13341 18 LADRLRPRTLEEFVGQDHILgegRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLAGVKDLRAEV 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488943260 80 DNYKNSL----YKPLIFIDEIHRLSKTQQEMLLIPMENYRLILIGASTENPYFVLSSGIRSRSMLFEFKSLGVKELETLL 155
Cdd:PRK13341 98 DRAKERLerhgKRTILFIDEVHRFNKAQQDALLPWVENGTITLIGATTENPYFEVNKALVSRSRLFRLKSLSDEDLHQLL 177
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488943260 156 LRVQE-------KMKFSIDKEAKDFLLKSA--DARAMLNLLEFVL-VLDEKHISLE--NLKKLRNTISSEGVS-SK--DT 220
Cdd:PRK13341 178 KRALQdkergygDRKVDLEPEAEKHLVDVAngDARSLLNALELAVeSTPPDEDGLIdiTLAIAEESIQQRAVLyDKegDA 257
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488943260 221 HYILASAMIKSLRGSDVDAAIYYLARLIDAGESADFIARRLVIFSSEDVGNADPNALNLAVSTLEAVKNIGYPEARIILA 300
Cdd:PRK13341 258 HFDTISAFIKSLRGSDPDAALYWLARMVEAGEDPRFIFRRMLIAASEDVGLADPQALVVVEACAAAFERVGLPEGLYPLA 337
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488943260 301 QCVVYLASTIKSNaSYKAINEALNYVKNNEALEIPNYLNNNHQEK------QNYLYPHDFGG-WVKQKYLSKNLK---FY 370
Cdd:PRK13341 338 QAALYLATAPKSN-SVLGFFDALKKVREEQVQDVPNHLRDANRDGkafgdgVGYRYPHAFRDhWVAQQYLPEALQgevFW 416
|
410
....*....|....*
gi 488943260 371 HSKGLGEEAKLLDNL 385
Cdd:PRK13341 417 QPSRQGWEGERRERL 431
|
|
| MgsA_C |
pfam12002 |
MgsA AAA+ ATPase C terminal; The MgsA protein possesses DNA-dependent ATPase and ssDNA ... |
234-380 |
1.22e-77 |
|
MgsA AAA+ ATPase C terminal; The MgsA protein possesses DNA-dependent ATPase and ssDNA annealing activities. MgsA contributes to the recovery of stalled replication forks and therefore prevents genomic instability caused by aberrant DNA replication. Additionally, MgsA may play a role in chromosomal segregation. This is consistent with a report that MgsA co-localizes with the replisome and affects chromosome segregation. This domain represents the C terminal region of MgsA.
Pssm-ID: 463426 [Multi-domain] Cd Length: 158 Bit Score: 236.47 E-value: 1.22e-77
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488943260 234 GSDVDAAIYYLARLIDAGESADFIARRLVIFSSEDVGNADPNALNLAVSTLEAVKNIGYPEARIILAQCVVYLASTIKSN 313
Cdd:pfam12002 1 GSDPDAALYWLARMLEAGEDPLFIARRLVIIASEDIGLADPQALVVAVAAAQAVERIGMPEARIPLAQAVIYLALAPKSN 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 488943260 314 ASYKAINEALNYVKNNEALEIPNYLNNNH---QEK----QNYLYPHDF-GGWVKQKYLSKNLK---FYHSKGLGEEAK 380
Cdd:pfam12002 81 SAYLAIDAALADVREGGSLPVPLHLRNAPtklMKKlgygKGYKYPHDYpNGYVKQQYLPDELKgrrYYEPTDNGYEKK 158
|
|
| PRK14700 |
PRK14700 |
recombination factor protein RarA; Provisional |
111-390 |
3.03e-53 |
|
recombination factor protein RarA; Provisional
Pssm-ID: 173163 [Multi-domain] Cd Length: 300 Bit Score: 179.05 E-value: 3.03e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488943260 111 MENYRLILIGASTENPYFVLSSGIRSRSMLFEFKSLGVKELETLLLR------VQEKMKFSIDKEAKDFL--LKSADARA 182
Cdd:PRK14700 4 VESGKIILIGATTENPTYYLNDALVSRLFILRLKRLSLVATQKLIEKalsqdeVLAKHKFKIDDGLYNAMhnYNEGDCRK 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488943260 183 MLNLLEFVLVLDEKHISLENLKKLRNtiSSEGVSSKDTH------YILASAMIKSLRGSDVDAAIYYLARLIDAGESADF 256
Cdd:PRK14700 84 ILNLLERMFLISTRGDEIYLNKELFD--QAVGETSRDFHregkefYEQLSAFHKSVRGTDPDAAIFWLSVMLDNGVDPLV 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488943260 257 IARRLVIFSSEDVGNADPNALNLAVSTLEAVKNIGYPEARIILAQCVVYLASTIKSNASYKAINEALNYVKNNEALEIPN 336
Cdd:PRK14700 162 IARRMLCIASEDIGNADPQALRVAMDAWNAYEKLGMPEGRLVLAQAAIYLAVAPKSNACYKALAQAQQLVKSLGNIDVPQ 241
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 488943260 337 YLNNnhQEKQNYLYPHDF-GGWVKQKYLSKNLK--FYHSKGLGEEAKL---LDNLYKLKN 390
Cdd:PRK14700 242 HLKN--YKDSNYLYPHNYpNSYVIQQYLPDNIIqnFYQPTASGFEAKIktkLDSINKIKK 299
|
|
| ruvB |
TIGR00635 |
Holliday junction DNA helicase, RuvB subunit; All proteins in this family for which functions ... |
11-237 |
1.26e-19 |
|
Holliday junction DNA helicase, RuvB subunit; All proteins in this family for which functions are known are 5'-3' DNA helicases that, as part of a complex with RuvA homologs serve as a 5'-3' Holliday junction helicase. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions. [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129721 [Multi-domain] Cd Length: 305 Bit Score: 88.51 E-value: 1.26e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488943260 11 NFDDILGQYELIE---IFKKFTALQK--LPHSIFFGTAGSGKTTFARVVAKEFGLDFYEFDGGNF-KLEELRKILDNYKN 84
Cdd:TIGR00635 2 LLAEFIGQEKVKEqlqLFIEAAKMRQeaLDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALeKPGDLAAILTNLEE 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488943260 85 slyKPLIFIDEIHRLSKTQQEMLLIPMENYRL--------------------ILIGASTENPyfVLSSGIRSR-SMLFEF 143
Cdd:TIGR00635 82 ---GDVLFIDEIHRLSPAVEELLYPAMEDFRLdivigkgpsarsvrldlppfTLVGATTRAG--MLTSPLRDRfGIILRL 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488943260 144 KSLGVKELETLLLRVQEKMKFSIDKEAKDFLLKSADA--RAMLNLL----EFVLVLDEKHIS----LENLKKLRntISSE 213
Cdd:TIGR00635 157 EFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRGtpRIANRLLrrvrDFAQVRGQKIINrdiaLKALEMLM--IDEL 234
|
250 260
....*....|....*....|....
gi 488943260 214 GVSSKDTHYIlaSAMIKSLRGSDV 237
Cdd:TIGR00635 235 GLDEIDRKLL--SVLIEQFQGGPV 256
|
|
| DnaX |
COG2812 |
DNA polymerase III, gamma/tau subunits [Replication, recombination and repair]; |
9-251 |
1.48e-18 |
|
DNA polymerase III, gamma/tau subunits [Replication, recombination and repair];
Pssm-ID: 442061 [Multi-domain] Cd Length: 340 Bit Score: 86.01 E-value: 1.48e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488943260 9 PENFDDILGQYELIEIFKKFTALQKLPHS-IFFGTAGSGKTTFARVVAK----EFG--------------------LDFY 63
Cdd:COG2812 6 PQTFDDVVGQEHVVRTLKNALASGRLAHAyLFTGPRGVGKTTLARILAKalncENGptgepcgecescraiaagshPDVI 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488943260 64 EFD--GGNFKLEELRKILDN--YK--NSLYKPLIfIDEIHRLS--------KTQQEmlliPMENYRLILIgasTENPYFV 129
Cdd:COG2812 86 EIDaeASNIGVDDIRELIEKvsYApvEGRYKVYI-IDEAHMLTteafnallKTLEE----PPPHVVFILA---TTEPQKL 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488943260 130 LSSgIRSRSMLFEFKSLGVKELETLLLRVQEKMKFSIDKEAKDFLLKSAD--ARAMLNLLEfvlvldekhislenlkklr 207
Cdd:COG2812 158 LPT-ILSRCQRFDFRRLPPEEIAEHLAKIAEREGIEIEPEALALIARAADgsMRDALSLLD------------------- 217
|
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 488943260 208 nTISSEGVSSKDTHYIlasAMIKSLRGSDVDAAIYYLARLIDAG 251
Cdd:COG2812 218 -QAIAFGLLDRRELLL---DLLEALLAGDVAALLALAEELAKRG 257
|
|
| ruvB |
PRK00080 |
Holliday junction branch migration DNA helicase RuvB; |
5-205 |
2.09e-18 |
|
Holliday junction branch migration DNA helicase RuvB;
Pssm-ID: 234619 [Multi-domain] Cd Length: 328 Bit Score: 85.18 E-value: 2.09e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488943260 5 LTFRPENFDDILGQYELIEIFKKF-TALQK----LPHSIFFGTAGSGKTTFARVVAKEFGldfyefdgGNFK------LE 73
Cdd:PRK00080 17 RSLRPKSLDEFIGQEKVKENLKIFiEAAKKrgeaLDHVLLYGPPGLGKTTLANIIANEMG--------VNIRitsgpaLE 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488943260 74 ---ELRKILDNYK-NSLykplIFIDEIHRLSKTQQEMLLIPMENYRL---I-----------------LIGASTEnpYFV 129
Cdd:PRK00080 89 kpgDLAAILTNLEeGDV----LFIDEIHRLSPVVEEILYPAMEDFRLdimIgkgpaarsirldlppftLIGATTR--AGL 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488943260 130 LSS------GIRSRsmlFEFKSlgVKELETLLLRVQEKMKFSIDKEAKDFLLKSADA--RAMLNLL----EFVLVLDEKH 197
Cdd:PRK00080 163 LTSplrdrfGIVQR---LEFYT--VEELEKIVKRSARILGVEIDEEGALEIARRSRGtpRIANRLLrrvrDFAQVKGDGV 237
|
....*...
gi 488943260 198 ISLENLKK 205
Cdd:PRK00080 238 ITKEIADK 245
|
|
| PRK14964 |
PRK14964 |
DNA polymerase III subunits gamma and tau; Provisional |
1-241 |
2.74e-18 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237870 [Multi-domain] Cd Length: 491 Bit Score: 86.38 E-value: 2.74e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488943260 1 MSLALTFRPENFDDILGQYELIEIFKKFTALQKLPHSIFF-GTAGSGKTTFARVVA-----------------------K 56
Cdd:PRK14964 1 MNLALKYRPSSFKDLVGQDVLVRILRNAFTLNKIPQSILLvGASGVGKTTCARIISlclncsngptsdpcgtchncisiK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488943260 57 EFG-LDFYEFDGG-NFKLEELRKILDNYK----NSLYKPLIfIDEIHRLSKTQQEMLLI----PMENYRLILigASTENP 126
Cdd:PRK14964 81 NSNhPDVIEIDAAsNTSVDDIKVILENSCylpiSSKFKVYI-IDEVHMLSNSAFNALLKtleePAPHVKFIL--ATTEVK 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488943260 127 YFVLSsgIRSRSMLFEFKSLGVKELETLLLRVQEKMKFSIDKEAKDFLLKSAD--ARAMLNLLEFVLVLDEKHISLENLK 204
Cdd:PRK14964 158 KIPVT--IISRCQRFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENSSgsMRNALFLLEQAAIYSNNKISEKSVR 235
|
250 260 270
....*....|....*....|....*....|....*..
gi 488943260 205 KLRntisseGVSSKDThyilASAMIKSLRGSDVDAAI 241
Cdd:PRK14964 236 DLL------GCVDKHI----LEDLVEAILLGDAQSAL 262
|
|
| RuvB_N |
pfam05496 |
Holliday junction DNA helicase RuvB P-loop domain; The RuvB protein makes up part of the ... |
8-120 |
1.05e-17 |
|
Holliday junction DNA helicase RuvB P-loop domain; The RuvB protein makes up part of the RuvABC revolvasome which catalyzes the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalyzed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein. This family contains the N-terminal region of the protein.
Pssm-ID: 398900 [Multi-domain] Cd Length: 159 Bit Score: 79.47 E-value: 1.05e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488943260 8 RPENFDDILGQYELIEIFKKFTALQK-----LPHSIFFGTAGSGKTTFARVVAKEFGldfyefdgGNFK------LE--- 73
Cdd:pfam05496 2 RPRTLDEYIGQEKVKENLKIFIEAAKqrgeaLDHVLLYGPPGLGKTTLANIIANEMG--------VNIRitsgpaIErpg 73
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 488943260 74 ELRKILDNYKNslyKPLIFIDEIHRLSKTQQEMLLIPMENYRL-ILIG 120
Cdd:pfam05496 74 DLAAILTNLEP---GDVLFIDEIHRLNRAVEEILYPAMEDFRLdIVIG 118
|
|
| PRK14953 |
PRK14953 |
DNA polymerase III subunits gamma and tau; Provisional |
4-296 |
7.62e-17 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237867 [Multi-domain] Cd Length: 486 Bit Score: 81.79 E-value: 7.62e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488943260 4 ALTFRPENFDDILGQYELIEIFKKFTALQKLPHS-IFFGTAGSGKTTFARVVAKEFGL---------------------- 60
Cdd:PRK14953 7 ARKYRPKFFKEVIGQEIVVRILKNAVKLQRVSHAyIFAGPRGTGKTTIARILAKVLNClnpqegepcgkcencveidkgs 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488943260 61 --DFYEFDGG-NFKLEELRKILDNYKnslYKPL------IFIDEIHRLSKTQQEMLLIPMEN--YRLILIGASTEnpYFV 129
Cdd:PRK14953 87 fpDLIEIDAAsNRGIDDIRALRDAVS---YTPIkgkykvYIIDEAHMLTKEAFNALLKTLEEppPRTIFILCTTE--YDK 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488943260 130 LSSGIRSRSMLFEFKSLGVKELETLLLRVQEKMKFSIDKEAKDFLLKSADA--RAMLNLLEFVLVLDEKHISLENLKKLR 207
Cdd:PRK14953 162 IPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQASEGgmRDAASLLDQASTYGEGKVTIKVVEEFL 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488943260 208 NTISSEGVSSkdthyilasaMIKSLRGSDVDAAIYYLARLIDAG--------ESADFIARRLV---------IFSSEDVG 270
Cdd:PRK14953 242 GIVSQESVRK----------FLNLLLESDVDEAIKFLRTLEEKGynlnkfwkQLEEEIRNILLnkslknpeeVFQVEDFY 311
|
330 340
....*....|....*....|....*.
gi 488943260 271 NADPNALNlAVSTLEAVKNIGYPEAR 296
Cdd:PRK14953 312 RKLEKPLE-ALLYLEDVINKAFSEAR 336
|
|
| PRK12402 |
PRK12402 |
replication factor C small subunit 2; Reviewed |
5-261 |
8.25e-17 |
|
replication factor C small subunit 2; Reviewed
Pssm-ID: 237090 [Multi-domain] Cd Length: 337 Bit Score: 80.80 E-value: 8.25e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488943260 5 LTFRPENFDDILGQYELIEIFKKFTALQKLPHSIFFGTAGSGKTTFARVVAKEFGLDFYE-----------FDGGNFKLE 73
Cdd:PRK12402 7 EKYRPALLEDILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYGDPWEnnftefnvadfFDQGKKYLV 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488943260 74 E----------LRKI----LDNYKNSL-----YKPL------IFIDEIHRLSKTQQEMLLIPMENY----RLILigaSTE 124
Cdd:PRK12402 87 EdprfahflgtDKRIrsskIDNFKHVLkeyasYRPLsadyktILLDNAEALREDAQQALRRIMEQYsrtcRFII---ATR 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488943260 125 NPYfVLSSGIRSRSMLFEFKSLGVKELETLLLRVQEKMKFSIDKEAKDFLLKSAD---ARAMLNLLefVLVLDEKHISLE 201
Cdd:PRK12402 164 QPS-KLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLELIAYYAGgdlRKAILTLQ--TAALAAGEITME 240
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 488943260 202 NLKKLRNTISSEGVsskdthyilASAMIKSLRGSDVDAAIYYL-ARLIDAGESADFIARRL 261
Cdd:PRK12402 241 AAYEALGDVGTDEV---------IESLLDAAEAGDFTDARKTLdDLLIDEGLSGGEVLEEL 292
|
|
| PRK14961 |
PRK14961 |
DNA polymerase III subunits gamma and tau; Provisional |
3-213 |
1.53e-16 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184925 [Multi-domain] Cd Length: 363 Bit Score: 80.24 E-value: 1.53e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488943260 3 LALTFRPENFDDILGQYELIEIFKKFTALQKLPHS-IFFGTAGSGKTTFARVVAKEFG---------------------- 59
Cdd:PRK14961 6 LARKWRPQYFRDIIGQKHIVTAISNGLSLGRIHHAwLLSGTRGVGKTTIARLLAKSLNcqngitsnpcrkciickeiekg 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488943260 60 --LDFYEFDGGN-FKLEELRKILDNYKNSLYK---PLIFIDEIHRLSKTQQEMLLI----PMENYRLILIGASTENpyfv 129
Cdd:PRK14961 86 lcLDLIEIDAASrTKVEEMREILDNIYYSPSKsrfKVYLIDEVHMLSRHSFNALLKtleePPQHIKFILATTDVEK---- 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488943260 130 LSSGIRSRSMLFEFKSLGVKELETLLLRVQEKMKFSIDKEAKDFLLKSADA--RAMLNLLEFVLVLDEKHISLENLKKLR 207
Cdd:PRK14961 162 IPKTILSRCLQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHAHGsmRDALNLLEHAINLGKGNINIKNVTDML 241
|
....*.
gi 488943260 208 NTISSE 213
Cdd:PRK14961 242 GLLNEK 247
|
|
| RuvB |
COG2255 |
Holliday junction resolvasome RuvABC, ATP-dependent DNA helicase subunit RuvB [Replication, ... |
6-170 |
2.43e-16 |
|
Holliday junction resolvasome RuvABC, ATP-dependent DNA helicase subunit RuvB [Replication, recombination and repair];
Pssm-ID: 441856 [Multi-domain] Cd Length: 337 Bit Score: 79.35 E-value: 2.43e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488943260 6 TFRPENFDDILGQYELIEIFKKF-TALQK----LPHSIFFGTAGSGKTTFARVVAKEFGldfyefdgGNFK------LE- 73
Cdd:COG2255 21 SLRPKRLDEYIGQEKVKENLKIFiEAAKKrgeaLDHVLLYGPPGLGKTTLAHIIANEMG--------VNIRitsgpaIEk 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488943260 74 --ELRKILDNYKNslyKPLIFIDEIHRLSKTQQEMLLIPMENYRL-ILIG----AST---ENPYFVL----------SSG 133
Cdd:COG2255 93 pgDLAAILTNLEE---GDVLFIDEIHRLSRVVEEILYPAMEDFRLdIVIGkgpaARSirlDLPPFTLvgattragllTSP 169
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 488943260 134 IRSR---SMLFEFKSlgVKELETLLLRVQEKMKFSIDKEA 170
Cdd:COG2255 170 LRDRfgiVLRLEFYT--VEELAEIVKRSARILGVEIDEEG 207
|
|
| PRK14962 |
PRK14962 |
DNA polymerase III subunits gamma and tau; Provisional |
7-347 |
3.13e-16 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237869 [Multi-domain] Cd Length: 472 Bit Score: 80.19 E-value: 3.13e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488943260 7 FRPENFDDILGQYELIEIFKKFTALQKLPHS-IFFGTAGSGKTTFARVVAKEFG------------------------LD 61
Cdd:PRK14962 8 YRPKTFSEVVGQDHVKKLIINALKKNSISHAyIFAGPRGTGKTTVARILAKSLNcenrkgvepcnecracrsidegtfMD 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488943260 62 FYEFDGG-NFKLEELRKILD--NYKNSL--YKPLIfIDEIHRLSKTQQEMLLI----PMENYRLILigaSTENPYFVLSS 132
Cdd:PRK14962 88 VIELDAAsNRGIDEIRKIRDavGYRPMEgkYKVYI-IDEVHMLTKEAFNALLKtleePPSHVVFVL---ATTNLEKVPPT 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488943260 133 gIRSRSMLFEFKSLGVKELETLLLRVQEKMKFSIDKEAKDFLLKSADA--RAMLNLLEFVLVLDEKHISLENLKKLRNTI 210
Cdd:PRK14962 164 -IISRCQVIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKRASGglRDALTMLEQVWKFSEGKITLETVHEALGLI 242
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488943260 211 SSEGVSSkdthyilasaMIKSLRGSDVDAAIYYLARLIDAGESAD-FIARRLVIFSSEDVGNADPNALNLAVSTLEAVKN 289
Cdd:PRK14962 243 PIEVVRD----------YINAIFNGDVKRVFTVLDDVYYSGKDYEvLIQQAIEDLVEDLERERANDIIQVSRQLLNILRE 312
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*...
gi 488943260 290 IGYPEARIILaqCVVYLASTIKSNASYKAINEalNYVKNNEAlEIPNYLNNNHQEKQN 347
Cdd:PRK14962 313 IKFAEEKRLV--CKLGSASIATRFSSPNVQEN--DVEEKNDN-SNVQQKEKKKEESKA 365
|
|
| rfc |
PRK00440 |
replication factor C small subunit; Reviewed |
7-269 |
2.83e-15 |
|
replication factor C small subunit; Reviewed
Pssm-ID: 234763 [Multi-domain] Cd Length: 319 Bit Score: 76.06 E-value: 2.83e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488943260 7 FRPENFDDILGQYELIEIFKKFTALQKLPHSIFFGTAGSGKTTFARVVAKE-FGLDFYEfdggNFKleEL-----RKI-- 78
Cdd:PRK00440 11 YRPRTLDEIVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARElYGEDWRE----NFL--ELnasdeRGIdv 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488943260 79 -LDNYKN---------SLYKpLIFIDEIHRLSKTQQEMLLIPMENYrliligasTENPYFVLS----SGI----RSRSML 140
Cdd:PRK00440 85 iRNKIKEfartapvggAPFK-IIFLDEADNLTSDAQQALRRTMEMY--------SQNTRFILScnysSKIidpiQSRCAV 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488943260 141 FEFKSLGVKELETLLLRVQEKMKFSIDKEAKDFLLKSA--DARAMLNLLEFVLVLDeKHISLENL--------------- 203
Cdd:PRK00440 156 FRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYVSegDMRKAINALQAAAATG-KEVTEEAVykitgtarpeeirem 234
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488943260 204 -------------KKLRNTISSEGVSSKDthyiLASAMIKSLRGSDVDAAIYylARLIDA-GEsADFiarRLVIFSSEDV 269
Cdd:PRK00440 235 ielalngdftearEKLRDLMIDYGLSGED----IIKQIHREVWSLDIPEELK--VELIDAiGE-ADF---RITEGANERI 304
|
|
| PRK05896 |
PRK05896 |
DNA polymerase III subunits gamma and tau; Validated |
7-251 |
4.10e-14 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 235638 [Multi-domain] Cd Length: 605 Bit Score: 73.73 E-value: 4.10e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488943260 7 FRPENFDDILGQYELIEIFKKFTALQKLPHS-IFFGTAGSGKTTFARVVAK------------------------EFGLD 61
Cdd:PRK05896 10 YRPHNFKQIIGQELIKKILVNAILNNKLTHAyIFSGPRGIGKTSIAKIFAKainclnpkdgdccnscsvcesintNQSVD 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488943260 62 FYEFDGG-NFKLEELRKILD--NYKNSLYKPLIFI-DEIHRLSKTQQEMLLIPMEN--YRLILIGASTENPYFVLSsgIR 135
Cdd:PRK05896 90 IVELDAAsNNGVDEIRNIIDniNYLPTTFKYKVYIiDEAHMLSTSAWNALLKTLEEppKHVVFIFATTEFQKIPLT--II 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488943260 136 SRSMLFEFKSLGVKELETLLLRVQEKMKFSIDKEAKDFLLKSAD--ARAMLNLLEFVLVLDEKHISLENLKKLRNTISSE 213
Cdd:PRK05896 168 SRCQRYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADLADgsLRDGLSILDQLSTFKNSEIDIEDINKTFGLVDNN 247
|
250 260 270
....*....|....*....|....*....|....*...
gi 488943260 214 GVSSkdthyilasaMIKSLRGSDVDAAIYYLARLIDAG 251
Cdd:PRK05896 248 KKIN----------LIELIQKNDIEELRNLINELESKG 275
|
|
| PRK06305 |
PRK06305 |
DNA polymerase III subunits gamma and tau; Validated |
7-227 |
6.24e-14 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 180523 [Multi-domain] Cd Length: 451 Bit Score: 72.88 E-value: 6.24e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488943260 7 FRPENFDDILGQYELIEIFKKFTALQKLPHS-IFFGTAGSGKTTFARVVAKEF-------------------------GL 60
Cdd:PRK06305 11 YRPQTFSEILGQDAVVAVLKNALRFNRAAHAyLFSGIRGTGKTTLARIFAKALncqnptedqepcnqcasckeissgtSL 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488943260 61 DFYEFDGGNFK-LEELRKI----LDNYKNSLYKPLIfIDEIHRLSKTQQEMLLI----PMENYRLILigASTENpYFVLS 131
Cdd:PRK06305 91 DVLEIDGASHRgIEDIRQInetvLFTPSKSRYKIYI-IDEVHMLTKEAFNSLLKtleePPQHVKFFL--ATTEI-HKIPG 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488943260 132 SgIRSRSMLFEFKSLGVKELETLLLRVQEKMKFSIDKEAKDFLLKSADA--RAMLNLLEFVLVLDEKHISLENLKKLRnt 209
Cdd:PRK06305 167 T-ILSRCQKMHLKRIPEETIIDKLALIAKQEGIETSREALLPIARAAQGslRDAESLYDYVVGLFPKSLDPDSVAKAL-- 243
|
250
....*....|....*...
gi 488943260 210 isseGVSSKDTHYILASA 227
Cdd:PRK06305 244 ----GLLSQDSLYTLDEA 257
|
|
| PRK14959 |
PRK14959 |
DNA polymerase III subunits gamma and tau; Provisional |
2-279 |
1.56e-13 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184923 [Multi-domain] Cd Length: 624 Bit Score: 72.02 E-value: 1.56e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488943260 2 SLALTFRPENFDDILGQYELIEIFKKFTALQKL-PHSIFFGTAGSGKTTFARVVAKEFG--------------------- 59
Cdd:PRK14959 5 SLTARYRPQTFAEVAGQETVKAILSRAAQENRVaPAYLFSGTRGVGKTTIARIFAKALNcetaptgepcntceqcrkvtq 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488943260 60 ---LDFYEFDGG-NFKLEELRKILD--NYK--NSLYKPLIfIDEIHRLSKTQQEMLLIPMEN--YRLILIGASTENPYFV 129
Cdd:PRK14959 85 gmhVDVVEIDGAsNRGIDDAKRLKEaiGYApmEGRYKVFI-IDEAHMLTREAFNALLKTLEEppARVTFVLATTEPHKFP 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488943260 130 LSsgIRSRSMLFEFKSLGVKELETLLLRVQEKMKFSIDKEAKDFLLKSA--DARAMLNLLEFVLVLDEKHISLENLKKLR 207
Cdd:PRK14959 164 VT--IVSRCQHFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIARRAagSVRDSMSLLGQVLALGESRLTIDGARGVL 241
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 488943260 208 NTISSEgvsskdthyiLASAMIKSLRGSDVDAAIYYLARLIDAGESADFIARRLV-----IFSSEDVGNADPNALNL 279
Cdd:PRK14959 242 GLAGQE----------LFLRLMEALAAQDCLGVANVVRELLDRGVDMGFFLRELVatwrnLFMLRQAGEAALASLDL 308
|
|
| PRK08691 |
PRK08691 |
DNA polymerase III subunits gamma and tau; Validated |
3-248 |
1.59e-13 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236333 [Multi-domain] Cd Length: 709 Bit Score: 72.05 E-value: 1.59e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488943260 3 LALTFRPENFDDILGQYELIEIFKKFTALQKLPHS-IFFGTAGSGKTTFARVVAKEFG---------------------- 59
Cdd:PRK08691 6 LARKWRPKTFADLVGQEHVVKALQNALDEGRLHHAyLLTGTRGVGKTTIARILAKSLNcenaqhgepcgvcqsctqidag 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488943260 60 --LDFYEFDGG-NFKLEELRKILDN--YKNSL--YKPLIfIDEIHRLSKTQQEMLLI----PMENYRLILigaSTENPYF 128
Cdd:PRK08691 86 ryVDLLEIDAAsNTGIDNIREVLENaqYAPTAgkYKVYI-IDEVHMLSKSAFNAMLKtleePPEHVKFIL---ATTDPHK 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488943260 129 VLSSgIRSRSMLFEFKSLGVKELETLLLRVQEKMKFSIDKEAKDFLLKSADA--RAMLNLLEFVLVLDEKHISLENLKKL 206
Cdd:PRK08691 162 VPVT-VLSRCLQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAAGsmRDALSLLDQAIALGSGKVAENDVRQM 240
|
250 260 270 280
....*....|....*....|....*....|....*....|....*....
gi 488943260 207 RNTISSE-------GVSSKDTHYILASAMIKSLRGSDVDAAIYYLARLI 248
Cdd:PRK08691 241 IGAVDKQylyelltGIINQDGAALLAKAQEMAACAVGFDNALGELAILL 289
|
|
| AAA |
pfam00004 |
ATPase family associated with various cellular activities (AAA); AAA family proteins often ... |
38-137 |
2.99e-13 |
|
ATPase family associated with various cellular activities (AAA); AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes.
Pssm-ID: 459627 [Multi-domain] Cd Length: 130 Bit Score: 66.08 E-value: 2.99e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488943260 38 IFFGTAGSGKTTFARVVAKEFGLDFYEFDGGNF-------KLEELRKILDNYKNSLyKPLIFIDEIHRLSKTQ------- 103
Cdd:pfam00004 2 LLYGPPGTGKTTLAKAVAKELGAPFIEISGSELvskyvgeSEKRLRELFEAAKKLA-PCVIFIDEIDALAGSRgsggdse 80
|
90 100 110 120
....*....|....*....|....*....|....*....|...
gi 488943260 104 ----QEMLLIPMENY-----RLILIGASTEnpYFVLSSGIRSR 137
Cdd:pfam00004 81 srrvVNQLLTELDGFtssnsKVIVIAATNR--PDKLDPALLGR 121
|
|
| PRK07133 |
PRK07133 |
DNA polymerase III subunits gamma and tau; Validated |
7-215 |
1.51e-12 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 235943 [Multi-domain] Cd Length: 725 Bit Score: 69.08 E-value: 1.51e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488943260 7 FRPENFDDILGQYELIEIFKKFTALQKLPHSIFF-GTAGSGKTTFARVVAKEF---------------------GLDFYE 64
Cdd:PRK07133 12 YRPKTFDDIVGQDHIVQTLKNIIKSNKISHAYLFsGPRGTGKTSVAKIFANALncshktdllepcqecienvnnSLDIIE 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488943260 65 FDGG-NFKLEELRKILDNYKN----SLYKPLIfIDEIHRLSKTQQEMLLIPMEN--YRLILIGASTENPYFVLSsgIRSR 137
Cdd:PRK07133 92 MDAAsNNGVDEIRELIENVKNlptqSKYKIYI-IDEVHMLSKSAFNALLKTLEEppKHVIFILATTEVHKIPLT--ILSR 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488943260 138 SMLFEFKSLGVKELETLLLRVQEKMKFSIDKEAKD--FLLKSADARAMLNLLEFVLVLDEKHISLENLKKLRNTISSEGV 215
Cdd:PRK07133 169 VQRFNFRRISEDEIVSRLEFILEKENISYEKNALKliAKLSSGSLRDALSIAEQVSIFGNNKITLKNVEELFGLVSNENL 248
|
|
| PRK14960 |
PRK14960 |
DNA polymerase III subunit gamma/tau; |
3-170 |
1.99e-12 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237868 [Multi-domain] Cd Length: 702 Bit Score: 68.92 E-value: 1.99e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488943260 3 LALTFRPENFDDILGQYELIEIFKKFTALQKLPHS-IFFGTAGSGKTTFARVVAK----EFG------------------ 59
Cdd:PRK14960 5 LARKYRPRNFNELVGQNHVSRALSSALERGRLHHAyLFTGTRGVGKTTIARILAKclncETGvtstpcevcatckavneg 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488943260 60 --LDFYEFDGGN-FKLEELRKILDNYKnslYKP------LIFIDEIHRLS--------KTQQEmlliPMENYRLILigaS 122
Cdd:PRK14960 85 rfIDLIEIDAASrTKVEDTRELLDNVP---YAPtqgrfkVYLIDEVHMLSthsfnallKTLEE----PPEHVKFLF---A 154
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 488943260 123 TENPYfVLSSGIRSRSMLFEFKSLGVKELETLLLRVQEKMKFSIDKEA 170
Cdd:PRK14960 155 TTDPQ-KLPITVISRCLQFTLRPLAVDEITKHLGAILEKEQIAADQDA 201
|
|
| PRK06647 |
PRK06647 |
DNA polymerase III subunits gamma and tau; Validated |
4-205 |
3.21e-12 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 235845 [Multi-domain] Cd Length: 563 Bit Score: 67.87 E-value: 3.21e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488943260 4 ALTFRPENFDDILGQYELIEIFKKFTALQKLPHS-IFFGTAGSGKTTFARVVAKEFG----------------------- 59
Cdd:PRK06647 7 ATKRRPRDFNSLEGQDFVVETLKHSIESNKIANAyIFSGPRGVGKTSSARAFARCLNcvngptpmpcgecsscksidndn 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488943260 60 -LDFYEFDGG-NFKLEELRKILDNY----KNSLYKPLIfIDEIHRLSKTQQEMLLIPME---NYrLILIGASTEnpYFVL 130
Cdd:PRK06647 87 sLDVIEIDGAsNTSVQDVRQIKEEImfppASSRYRVYI-IDEVHMLSNSAFNALLKTIEeppPY-IVFIFATTE--VHKL 162
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 488943260 131 SSGIRSRSMLFEFKSLGVKELETLLLRVQEKMKFSIDKEAKDFLLKSA--DARAMLNLLEFVLVLDEKHISLENLKK 205
Cdd:PRK06647 163 PATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKStgSVRDAYTLFDQVVSFSDSDITLEQIRS 239
|
|
| PRK04195 |
PRK04195 |
replication factor C large subunit; Provisional |
1-206 |
1.38e-11 |
|
replication factor C large subunit; Provisional
Pssm-ID: 235250 [Multi-domain] Cd Length: 482 Bit Score: 65.71 E-value: 1.38e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488943260 1 MSLALTFRPENFDDILGQYELIEIFKKF--TALQKLPHS--IFFGTAGSGKTTFARVVAKEFGLDFYEFDGGNF-KLEEL 75
Cdd:PRK04195 2 MPWVEKYRPKTLSDVVGNEKAKEQLREWieSWLKGKPKKalLLYGPPGVGKTSLAHALANDYGWEVIELNASDQrTADVI 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488943260 76 RKILDnyKNSLYKPL-------IFIDEIHRLSKTQ-----QEML-LIPMENYRLILIGastENPYFVLSSGIRSRSMLFE 142
Cdd:PRK04195 82 ERVAG--EAATSGSLfgarrklILLDEVDGIHGNEdrggaRAILeLIKKAKQPIILTA---NDPYDPSLRELRNACLMIE 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 488943260 143 FKSLGVKELETLLLRVQEKMKFSIDKEAKDFLLKSA--DARAMLNLLEFVLVlDEKHISLENLKKL 206
Cdd:PRK04195 157 FKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSggDLRSAINDLQAIAE-GYGKLTLEDVKTL 221
|
|
| AAA_assoc_2 |
pfam16193 |
AAA C-terminal domain; AAA_assoc_2 is found at the C-terminus of a relatively small set of AAA ... |
160-233 |
1.66e-11 |
|
AAA C-terminal domain; AAA_assoc_2 is found at the C-terminus of a relatively small set of AAA domains in proteins ranging from archaeal to fungi, plants and mammals.
Pssm-ID: 465057 Cd Length: 81 Bit Score: 59.79 E-value: 1.66e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488943260 160 EKMKFSIDKEAKDFLLKSA--DARAMLNLLEFVLVL-----DEKHISLENLKKLRNTISSEGVSSKDTHYILASAMIKSL 232
Cdd:pfam16193 1 GGLKIELDDEALEALAELAdgDARRALNALELAVLStppddGGIHITLEILEEALQRKALRYDKDGDEHYDLISAFHKSI 80
|
.
gi 488943260 233 R 233
Cdd:pfam16193 81 R 81
|
|
| PRK14971 |
PRK14971 |
DNA polymerase III subunit gamma/tau; |
4-206 |
2.04e-11 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237874 [Multi-domain] Cd Length: 614 Bit Score: 65.57 E-value: 2.04e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488943260 4 ALTFRPENFDDILGQYELIEIFKKFTALQKLPHSIFF-GTAGSGKTTFARVVAKEF------------------------ 58
Cdd:PRK14971 8 ARKYRPSTFESVVGQEALTTTLKNAIATNKLAHAYLFcGPRGVGKTTCARIFAKTIncqnltadgeacnecescvafneq 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488943260 59 -GLDFYEFDGG-NFKLEELRKILD--NYKNSL--YKPLIfIDEIHRLSKTQQEMLLIPMEN--YRLILIGASTENpYFVL 130
Cdd:PRK14971 88 rSYNIHELDAAsNNSVDDIRNLIEqvRIPPQIgkYKIYI-IDEVHMLSQAAFNAFLKTLEEppSYAIFILATTEK-HKIL 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488943260 131 SSgIRSRSMLFEFKSLGVKELETLLLRVQEKMKFSIDKEAKDFLLKSADA--RAMLNLLEFVLVLDEKHIS----LENLK 204
Cdd:PRK14971 166 PT-ILSRCQIFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQKADGgmRDALSIFDQVVSFTGGNITyksvIENLN 244
|
..
gi 488943260 205 KL 206
Cdd:PRK14971 245 IL 246
|
|
| PRK14970 |
PRK14970 |
DNA polymerase III subunits gamma and tau; Provisional |
4-206 |
2.56e-11 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184934 [Multi-domain] Cd Length: 367 Bit Score: 64.51 E-value: 2.56e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488943260 4 ALTFRPENFDDILGQYELIEIFKKFTALQKLPHSIFF-GTAGSGKTTFARVVAKE------------FGLDFYEFDGG-N 69
Cdd:PRK14970 8 ARKYRPQTFDDVVGQSHITNTLLNAIENNHLAQALLFcGPRGVGKTTCARILARKinqpgyddpnedFSFNIFELDAAsN 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488943260 70 FKLEELRKILDNYK----NSLYKPLIfIDEIHRLSKTQQEMLLIPMEN--YRLILIGASTENPYFVLSsgIRSRSMLFEF 143
Cdd:PRK14970 88 NSVDDIRNLIDQVRippqTGKYKIYI-IDEVHMLSSAAFNAFLKTLEEppAHAIFILATTEKHKIIPT--ILSRCQIFDF 164
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 488943260 144 KSLGVKELETLLLRVQEKMKFSIDKEAKDFLLKSADA--RAMLNLLEFVLVLDEKHISL----ENLKKL 206
Cdd:PRK14970 165 KRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADGalRDALSIFDRVVTFCGKNITRqavtENLNIL 233
|
|
| PRK14969 |
PRK14969 |
DNA polymerase III subunits gamma and tau; Provisional |
3-188 |
3.57e-11 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237873 [Multi-domain] Cd Length: 527 Bit Score: 64.77 E-value: 3.57e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488943260 3 LALTFRPENFDDILGQYELIEIFKKFTALQKLPHS-IFFGTAGSGKTTFARVVAK----EFGLDFY---------EFDGG 68
Cdd:PRK14969 6 LARKWRPKSFSELVGQEHVVRALTNALEQQRLHHAyLFTGTRGVGKTTLARILAKslncETGVTATpcgvcsaclEIDSG 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488943260 69 NF------------KLEELRKILDnykNSLYKP------LIFIDEIHRLS--------KTQQEmlliPMENYRLILigAS 122
Cdd:PRK14969 86 RFvdlievdaasntQVDAMRELLD---NAQYAPtrgrfkVYIIDEVHMLSksafnamlKTLEE----PPEHVKFIL--AT 156
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 488943260 123 TEN---PYFVLssgirSRSMLFEFKSLGVKELETLLLRVQEKMKFSIDKEAKDFLLKSADA--RAMLNLLE 188
Cdd:PRK14969 157 TDPqkiPVTVL-----SRCLQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAAAGsmRDALSLLD 222
|
|
| AAA |
cd00009 |
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ... |
17-137 |
6.22e-11 |
|
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Pssm-ID: 99707 [Multi-domain] Cd Length: 151 Bit Score: 60.24 E-value: 6.22e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488943260 17 GQYELIEIFKKFTALQKLPHSIFFGTAGSGKTTFARVVAKE---FGLDFYEFDGGNFKLEELRKILDNY--------KNS 85
Cdd:cd00009 2 GQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANElfrPGAPFLYLNASDLLEGLVVAELFGHflvrllfeLAE 81
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 488943260 86 LYKP-LIFIDEIHRLS----KTQQEMLLIPME----NYRLILIGASTENPYFVLSSGIRSR 137
Cdd:cd00009 82 KAKPgVLFIDEIDSLSrgaqNALLRVLETLNDlridRENVRVIGATNRPLLGDLDRALYDR 142
|
|
| PRK14956 |
PRK14956 |
DNA polymerase III subunits gamma and tau; Provisional |
3-338 |
7.74e-11 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184920 [Multi-domain] Cd Length: 484 Bit Score: 63.43 E-value: 7.74e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488943260 3 LALTFRPENFDDILGQYELIEIFKKFTALQKLPHS-IFFGTAGSGKTTFARVVAKEFGL--------------------- 60
Cdd:PRK14956 8 LSRKYRPQFFRDVIHQDLAIGALQNALKSGKIGHAyIFFGPRGVGKTTIARILAKRLNCenpignepcnectscleitkg 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488943260 61 ---DFYEFDGG-NFKLEELRKILDNYK----NSLYKPLIfIDEIHRLSKTQQEMLLIPMEN--YRLILIGASTEnpYFVL 130
Cdd:PRK14956 88 issDVLEIDAAsNRGIENIRELRDNVKfapmGGKYKVYI-IDEVHMLTDQSFNALLKTLEEppAHIVFILATTE--FHKI 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488943260 131 SSGIRSRSMLFEFKSLGVKELETLLLRVQEKMKFSIDKEAKDFLLKSADA--RAMLNLLEFVLVLDEKHISLENLKKLrn 208
Cdd:PRK14956 165 PETILSRCQDFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKKGDGsvRDMLSFMEQAIVFTDSKLTGVKIRKM-- 242
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488943260 209 tISSEGVSskdthyiLASAMIKSLRGSDVDAAIY-YLARLIDAG--------ESADFIARRLVIFSSEdvgnADPNALNL 279
Cdd:PRK14956 243 -IGYHGIE-------FLTSFIKSLIDPDNHSKSLeILESLYQEGqdiykflwDSIEFTHTLNLIRDSL----ADRESVNF 310
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*....
gi 488943260 280 AVSTLEAVKNigypEARIILAQCVVYLASTIKSnasykaINEALNYVKNNEALEIPNYL 338
Cdd:PRK14956 311 PKEDLQKMKS----DFENVDSSKLNFLSGKLFE------IYEKIKTIRLRNSFEIKVFT 359
|
|
| PRK14957 |
PRK14957 |
DNA polymerase III subunits gamma and tau; Provisional |
2-247 |
8.01e-11 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184921 [Multi-domain] Cd Length: 546 Bit Score: 63.56 E-value: 8.01e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488943260 2 SLALTFRPENFDDILGQYELIEIFKKFTALQKLPHS-IFFGTAGSGKTTFARVVAKEFG--------------------- 59
Cdd:PRK14957 5 ALARKYRPQSFAEVAGQQHALNSLVHALETQKVHHAyLFTGTRGVGKTTLGRLLAKCLNcktgvtaepcnkcencvainn 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488943260 60 ---LDFYEFDGGNFK-LEELRKILDNYKnslYKP------LIFIDEIHRLSKTQQEMLLI----PMENYRLILigASTEn 125
Cdd:PRK14957 85 nsfIDLIEIDAASRTgVEETKEILDNIQ---YMPsqgrykVYLIDEVHMLSKQSFNALLKtleePPEYVKFIL--ATTD- 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488943260 126 pYFVLSSGIRSRSMLFEFKSLGVKELETLLLRVQEKMKFSIDKEAKDFLLKSADA--RAMLNLLEFVLVLDEKHISLENL 203
Cdd:PRK14957 159 -YHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHAKGslRDALSLLDQAISFCGGELKQAQI 237
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 488943260 204 KKLRNTISSEGVSS-------KDTHYILASAMIKSLRGSDVDAAIYYLARL 247
Cdd:PRK14957 238 KQMLGIIDSEEVYSiinaiidNDPKAILPAIKNLALTESSADAVLDRIAEI 288
|
|
| PRK14950 |
PRK14950 |
DNA polymerase III subunits gamma and tau; Provisional |
7-262 |
1.05e-10 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237864 [Multi-domain] Cd Length: 585 Bit Score: 63.29 E-value: 1.05e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488943260 7 FRPENFDDILGQYELIEIFKKFTALQKLPHS-IFFGTAGSGKTTFARVVAKEF-------------------------GL 60
Cdd:PRK14950 10 WRSQTFAELVGQEHVVQTLRNAIAEGRVAHAyLFTGPRGVGKTSTARILAKAVncttndpkgrpcgtcemcraiaegsAV 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488943260 61 DFYEFDGG-NFKLEELRKILD--NYKNSL--YKPLIfIDEIHRLSKTQQEMLLIPMENY--RLILIGASTEnPYFVLSSg 133
Cdd:PRK14950 90 DVIEMDAAsHTSVDDAREIIErvQFRPALarYKVYI-IDEVHMLSTAAFNALLKTLEEPppHAIFILATTE-VHKVPAT- 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488943260 134 IRSRSMLFEFKSLGVKELETLLLRVQEKMKFSIDKEAKDFLLKSADA--RAMLNLLEFVLVLDEKHISLENLKklrntiS 211
Cdd:PRK14950 167 ILSRCQRFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARAATGsmRDAENLLQQLATTYGGEISLSQVQ------S 240
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 488943260 212 SEGVSSKDTHYILASAMIKslrgSDVDAAIYYLARLIDAGESADFIARRLV 262
Cdd:PRK14950 241 LLGISGDEEVKALAEALLA----KDLKAALRTLNAVAADGADLRQFTRDLV 287
|
|
| PRK14965 |
PRK14965 |
DNA polymerase III subunits gamma and tau; Provisional |
1-191 |
1.85e-10 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237871 [Multi-domain] Cd Length: 576 Bit Score: 62.45 E-value: 1.85e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488943260 1 MS---LALTFRPENFDDILGQYELIEIFKKFTALQKLPHSIFF-GTAGSGKTTFARVVAK----EFGL------------ 60
Cdd:PRK14965 1 MSylvLARKYRPQTFSDLTGQEHVSRTLQNAIDTGRVAHAFLFtGARGVGKTSTARILAKalncEQGLtaepcnvcppcv 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488943260 61 --------DFYEFDGG-NFKLEELRKILDNYK----NSLYKplIF-IDEIHRLS--------KTQQEmlliPMENYRLIL 118
Cdd:PRK14965 81 eitegrsvDVFEIDGAsNTGVDDIRELRENVKylpsRSRYK--IFiIDEVHMLStnafnallKTLEE----PPPHVKFIF 154
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 488943260 119 igASTEnPYFVLSSgIRSRSMLFEFKSLGVKELETLLLRVQEKMKFSIDKEAKDFLLKSADA--RAMLNLLEFVL 191
Cdd:PRK14965 155 --ATTE-PHKVPIT-ILSRCQRFDFRRIPLQKIVDRLRYIADQEGISISDAALALVARKGDGsmRDSLSTLDQVL 225
|
|
| PRK14954 |
PRK14954 |
DNA polymerase III subunits gamma and tau; Provisional |
3-213 |
2.16e-10 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184918 [Multi-domain] Cd Length: 620 Bit Score: 62.27 E-value: 2.16e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488943260 3 LALTFRPENFDDILGQYELIEIFKKFTALQKLPHS-IFFGTAGSGKTTFARVVAK------------------------E 57
Cdd:PRK14954 6 IARKYRPSKFADITAQEHITHTIQNSLRMDRVGHGyIFSGLRGVGKTTAARVFAKavncqrmiddpvylqevtepcgecE 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488943260 58 FGLDF--------YEFDGG-NFKLEELRKILDNYKnslYKP------LIFIDEIHRLSKTQQEMLLIPMEN--YRLILIG 120
Cdd:PRK14954 86 SCRDFdagtslniSEFDAAsNNSVDDIRQLRENVR---YGPqkgryrVYIIDEVHMLSTAAFNAFLKTLEEppPHAIFIF 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488943260 121 ASTEnpYFVLSSGIRSRSMLFEFKSLGVKELETLLLRVQEKMKFSIDKEAKDFLLKSA-----DARAMLN-LLEFVLVLD 194
Cdd:PRK14954 163 ATTE--LHKIPATIASRCQRFNFKRIPLDEIQSQLQMICRAEGIQIDADALQLIARKAqgsmrDAQSILDqVIAFSVGSE 240
|
250 260
....*....|....*....|
gi 488943260 195 -EKHISLENLKKLRNTISSE 213
Cdd:PRK14954 241 aEKVIAYQGVAELLNYIDDE 260
|
|
| PRK14949 |
PRK14949 |
DNA polymerase III subunits gamma and tau; Provisional |
1-198 |
4.09e-10 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237863 [Multi-domain] Cd Length: 944 Bit Score: 61.66 E-value: 4.09e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488943260 1 MS---LALTFRPENFDDILGQYELIEIFKKFTALQKLPHS-IFFGTAGSGKTTFARVVAKefGL---------------- 60
Cdd:PRK14949 1 MSyqvLARKWRPATFEQMVGQSHVLHALTNALTQQRLHHAyLFTGTRGVGKTSLARLFAK--GLnceqgvtatpcgvcss 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488943260 61 ----------DFYEFDGGN-FKLEELRKILDNYKnslYKP------LIFIDEIHRLS--------KTQQEmlliPMENYR 115
Cdd:PRK14949 79 cveiaqgrfvDLIEVDAASrTKVDDTRELLDNVQ---YRPsrgrfkVYLIDEVHMLSrssfnallKTLEE----PPEHVK 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488943260 116 LILigASTEN---PYFVLSsgirsRSMLFEFKSLGVKELETLLLRV--QEKMKFsiDKEAKDFLLKSA-----DA----- 180
Cdd:PRK14949 152 FLL--ATTDPqklPVTVLS-----RCLQFNLKSLTQDEIGTQLNHIltQEQLPF--EAEALTLLAKAAngsmrDAlsltd 222
|
250 260
....*....|....*....|....*..
gi 488943260 181 --------RAMLNLLEFVL-VLDEKHI 198
Cdd:PRK14949 223 qaiafgggQVMLTQVQTMLgSIDEQHV 249
|
|
| PRK08451 |
PRK08451 |
DNA polymerase III subunits gamma and tau; Validated |
1-188 |
1.14e-09 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236267 [Multi-domain] Cd Length: 535 Bit Score: 60.05 E-value: 1.14e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488943260 1 MSLALTFRPENFDDILGQyELIEIFKKFtAL--QKLPHS-IFFGTAGSGKTTFARVVAK----EFG-------------- 59
Cdd:PRK08451 2 QALALKYRPKHFDELIGQ-ESVSKTLSL-ALdnNRLAHAyLFSGLRGSGKTSSARIFARalvcEQGpsstpcdtciqcqs 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488943260 60 ------LDFYEFDGG-NFKLEELRKILDNYKnslYKPL-----IF-IDEIHRLSKTQQEMLLIPMEnyrliligastENP 126
Cdd:PRK08451 80 alenrhIDIIEMDAAsNRGIDDIRELIEQTK---YKPSmarfkIFiIDEVHMLTKEAFNALLKTLE-----------EPP 145
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 488943260 127 YFV-----------LSSGIRSRSMLFEFKSLG----VKELETLLlrvqEKMKFSIDKEAKDFLLKSADA--RAMLNLLE 188
Cdd:PRK08451 146 SYVkfilattdplkLPATILSRTQHFRFKQIPqnsiISHLKTIL----EKEGVSYEPEALEILARSGNGslRDTLTLLD 220
|
|
| SpoVK |
COG0464 |
AAA+-type ATPase, SpoVK/Ycf46/Vps4 family [Cell wall/membrane/envelope biogenesis, Cell cycle ... |
3-219 |
1.58e-09 |
|
AAA+-type ATPase, SpoVK/Ycf46/Vps4 family [Cell wall/membrane/envelope biogenesis, Cell cycle control, cell division, chromosome partitioning, Signal transduction mechanisms];
Pssm-ID: 440232 [Multi-domain] Cd Length: 397 Bit Score: 59.15 E-value: 1.58e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488943260 3 LALTFRPENFDDILGQ-------YELIEIFKKFTALQK---LP---HSIFFGTAGSGKTTFARVVAKEFGLDFYEFDGGN 69
Cdd:COG0464 147 ELLELREAILDDLGGLeevkeelRELVALPLKRPELREeygLPpprGLLLYGPPGTGKTLLARALAGELGLPLIEVDLSD 226
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488943260 70 F----------KLEEL-RKILDNyknslYKPLIFIDEIHRL-----------SKTQQEMLLIPMEN--YRLILIGASten 125
Cdd:COG0464 227 LvskyvgetekNLREVfDKARGL-----APCVLFIDEADALagkrgevgdgvGRRVVNTLLTEMEElrSDVVVIAAT--- 298
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488943260 126 pYFVLS--SGIRSR-SMLFEFKSLGVKELETLLLRVQEKMKFSIDKEAKDFLLKS-----ADARAML-NLLEFVLVLDEK 196
Cdd:COG0464 299 -NRPDLldPALLRRfDEIIFFPLPDAEERLEIFRIHLRKRPLDEDVDLEELAEATeglsgADIRNVVrRAALQALRLGRE 377
|
250 260
....*....|....*....|...
gi 488943260 197 HISLENLKKlrnTISSEGVSSKD 219
Cdd:COG0464 378 PVTTEDLLE---ALEREDIFLKR 397
|
|
| 44 |
PHA02544 |
clamp loader, small subunit; Provisional |
7-114 |
2.52e-09 |
|
clamp loader, small subunit; Provisional
Pssm-ID: 222866 [Multi-domain] Cd Length: 316 Bit Score: 58.08 E-value: 2.52e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488943260 7 FRPENFDD-ILGQYElIEIFKKFTALQKLPHSIFF-GTAGSGKTTFARVVAKEFGLDFYEFDGGNFKLEELRKILDNYKN 84
Cdd:PHA02544 15 YRPSTIDEcILPAAD-KETFKSIVKKGRIPNMLLHsPSPGTGKTTVAKALCNEVGAEVLFVNGSDCRIDFVRNRLTRFAS 93
|
90 100 110
....*....|....*....|....*....|....*
gi 488943260 85 --SLYKP--LIFIDEIHRLS-KTQQEMLLIPMENY 114
Cdd:PHA02544 94 tvSLTGGgkVIIIDEFDRLGlADAQRHLRSFMEAY 128
|
|
| PRK14958 |
PRK14958 |
DNA polymerase III subunits gamma and tau; Provisional |
3-210 |
3.56e-09 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184922 [Multi-domain] Cd Length: 509 Bit Score: 58.20 E-value: 3.56e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488943260 3 LALTFRPENFDDILGQYELIEIFKKFTALQKLPHS-IFFGTAGSGKTTFARVVAK----EFGL----------------- 60
Cdd:PRK14958 6 LARKWRPRCFQEVIGQAPVVRALSNALDQQYLHHAyLFTGTRGVGKTTISRILAKclncEKGVsanpcndcencreideg 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488943260 61 ---DFYEFDGGN-FKLEELRKILDNYKNSLYK---PLIFIDEIHRLSKTQQEMLLIPMEN--YRLILIGASTEnpYFVLS 131
Cdd:PRK14958 86 rfpDLFEVDAASrTKVEDTRELLDNIPYAPTKgrfKVYLIDEVHMLSGHSFNALLKTLEEppSHVKFILATTD--HHKLP 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488943260 132 SGIRSRSMLFEFKSLGVKELETLLLRVQEKMKFSIDKEAKDFLLKSADA--RAMLNLLEFVLVLDEKHISLENLKKLRNT 209
Cdd:PRK14958 164 VTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARAANGsvRDALSLLDQSIAYGNGKVLIADVKTMLGT 243
|
.
gi 488943260 210 I 210
Cdd:PRK14958 244 I 244
|
|
| PRK14955 |
PRK14955 |
DNA polymerase III subunits gamma and tau; Provisional |
3-213 |
1.57e-08 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184919 [Multi-domain] Cd Length: 397 Bit Score: 56.05 E-value: 1.57e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488943260 3 LALTFRPENFDDILGQYELIEIFKKFTALQKLPHS-IFFGTAGSGKTTFARVVAKEF----------------------- 58
Cdd:PRK14955 6 IARKYRPKKFADITAQEHITRTIQNSLRMGRVGHGyIFSGLRGVGKTTAARVFAKAVncqrmiddadylqevtepcgece 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488943260 59 ---------GLDFYEFDGG-NFKLEELRKILDNYKnslYKP------LIFIDEIHRLSKTQQEMLLIPMEN--YRLILIG 120
Cdd:PRK14955 86 scrdfdagtSLNISEFDAAsNNSVDDIRLLRENVR---YGPqkgryrVYIIDEVHMLSIAAFNAFLKTLEEppPHAIFIF 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488943260 121 ASTEnpYFVLSSGIRSRSMLFEFKSLGVKELETLLLRVQEKMKFSIDKEAKDFLLKSA-----DARAMLN-LLEFVLVLD 194
Cdd:PRK14955 163 ATTE--LHKIPATIASRCQRFNFKRIPLEEIQQQLQGICEAEGISVDADALQLIGRKAqgsmrDAQSILDqVIAFSVESE 240
|
250 260
....*....|....*....|
gi 488943260 195 -EKHISLENLKKLRNTISSE 213
Cdd:PRK14955 241 gEGSIRYDKVAELLNYIDDE 260
|
|
| PRK05563 |
PRK05563 |
DNA polymerase III subunits gamma and tau; Validated |
1-264 |
5.36e-08 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 235505 [Multi-domain] Cd Length: 559 Bit Score: 54.49 E-value: 5.36e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488943260 1 MS-LAL--TFRPENFDDILGQYELIEIFKKFTALQKLPHS-IFFGTAGSGKTTFARVVAKEFG----------------- 59
Cdd:PRK05563 1 MMyQALyrKWRPQTFEDVVGQEHITKTLKNAIKQGKISHAyLFSGPRGTGKTSAAKIFAKAVNclnppdgepcneceick 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488943260 60 -------LDFYEFDGG-NFKLEELRKILDNYK----NSLYKPLIfIDEIHRLS--------KTQQEmlliPMENyrLILI 119
Cdd:PRK05563 81 aitngslMDVIEIDAAsNNGVDEIRDIRDKVKyapsEAKYKVYI-IDEVHMLStgafnallKTLEE----PPAH--VIFI 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488943260 120 GASTEnPYFVLSSgIRSRSMLFEFKSLGVKELETLLLRVQEKMKFSIDKEAKDFLLKSADArAM---LNLLEFVLVLDEK 196
Cdd:PRK05563 154 LATTE-PHKIPAT-ILSRCQRFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIARAAEG-GMrdaLSILDQAISFGDG 230
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 488943260 197 HISLENLKKLRNTISSEGVSSkdthyilasaMIKSLRGSDVDAAIYYLARLIDAGESADFIARRLVIF 264
Cdd:PRK05563 231 KVTYEDALEVTGSVSQEALDD----------LVDAIVEGDVAKALKILEELLDEGKDPNRFIEDLIYY 288
|
|
| PRK14951 |
PRK14951 |
DNA polymerase III subunits gamma and tau; Provisional |
1-131 |
7.59e-08 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237865 [Multi-domain] Cd Length: 618 Bit Score: 54.34 E-value: 7.59e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488943260 1 MS---LALTFRPENFDDILGQYELIEIFKKFTALQKLPHS-IFFGTAGSGKTTFARVVAKEFG----------------- 59
Cdd:PRK14951 1 MSylvLARKYRPRSFSEMVGQEHVVQALTNALTQQRLHHAyLFTGTRGVGKTTVSRILAKSLNcqgpdgqggitatpcgv 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488943260 60 ------------LDFYEFDGG-NFKLEELRKILDnykNSLYKPL-----IF-IDEIHRLS--------KTQQEmlliPME 112
Cdd:PRK14951 81 cqacrdidsgrfVDYTELDAAsNRGVDEVQQLLE---QAVYKPVqgrfkVFmIDEVHMLTntafnamlKTLEE----PPE 153
|
170 180
....*....|....*....|..
gi 488943260 113 NYRLILigASTEN---PYFVLS 131
Cdd:PRK14951 154 YLKFVL--ATTDPqkvPVTVLS 173
|
|
| RecA-like_protease |
cd19481 |
proteases similar to RecA; RecA-like NTPases. This family includes the NTP binding domain of ... |
26-122 |
2.75e-07 |
|
proteases similar to RecA; RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410889 [Multi-domain] Cd Length: 158 Bit Score: 49.97 E-value: 2.75e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488943260 26 KKFTALQKLPHSI-FFGTAGSGKTTFARVVAKEFGLDFYEFDGGNF-------KLEELRKILDnYKNSLYKPLIFIDEIH 97
Cdd:cd19481 17 RLRRYGLGLPKGIlLYGPPGTGKTLLAKALAGELGLPLIVVKLSSLlskyvgeSEKNLRKIFE-RARRLAPCILFIDEID 95
|
90 100 110 120
....*....|....*....|....*....|....*....|.
gi 488943260 98 RLSKTQQEM------------LLIPMENY----RLILIGAS 122
Cdd:cd19481 96 AIGRKRDSSgesgelrrvlnqLLTELDGVnsrsKVLVIAAT 136
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
38-132 |
4.09e-07 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 49.29 E-value: 4.09e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488943260 38 IFFGTAGSGKTTFARVVAKEF---GLDFYEFDGGNFKLEELRKILDNYKNSLYK--------------------PLIFID 94
Cdd:smart00382 6 LIVGPPGSGKTTLARALARELgppGGGVIYIDGEDILEEVLDQLLLIIVGGKKAsgsgelrlrlalalarklkpDVLILD 85
|
90 100 110
....*....|....*....|....*....|....*...
gi 488943260 95 EIHRLSKTQQEMLLIPMENYRLILIGASTENPYFVLSS 132
Cdd:smart00382 86 EITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTT 123
|
|
| PRK14963 |
PRK14963 |
DNA polymerase III subunits gamma and tau; Provisional |
7-193 |
4.26e-07 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184927 [Multi-domain] Cd Length: 504 Bit Score: 51.76 E-value: 4.26e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488943260 7 FRPENFDDILGQYELIEIFKKFTALQKLPHS-IFFGTAGSGKTTFARVVAKEFGL-----------------------DF 62
Cdd:PRK14963 8 ARPITFDEVVGQEHVKEVLLAALRQGRLGHAyLFSGPRGVGKTTTARLIAMAVNCsgedpkpcgecesclavrrgahpDV 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488943260 63 YEFDGG-NFKLEELRKILDnyKNSLY-----KPLIFIDEIHRLSKTQQEMLLIPMEN--YRLILIGASTEnPYFVLSSgI 134
Cdd:PRK14963 88 LEIDAAsNNSVEDVRDLRE--KVLLAplrggRKVYILDEAHMMSKSAFNALLKTLEEppEHVIFILATTE-PEKMPPT-I 163
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 488943260 135 RSRSMLFEFKSLGVKELETLLLRVQEKMKFSIDKEAKDFLLKSADArAMLN---LLEFVLVL 193
Cdd:PRK14963 164 LSRTQHFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLADG-AMRDaesLLERLLAL 224
|
|
| PRK12323 |
PRK12323 |
DNA polymerase III subunit gamma/tau; |
3-164 |
5.96e-07 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 51.42 E-value: 5.96e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488943260 3 LALTFRPENFDDILGQYELIeifKKFT-AL--QKLPHS-IFFGTAGSGKTTFARVVAKEFG------------------- 59
Cdd:PRK12323 6 LARKWRPRDFTTLVGQEHVV---RALThALeqQRLHHAyLFTGTRGVGKTTLSRILAKSLNctgadgeggitaqpcgqcr 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488943260 60 ----------LDFYEFDGG-NFKLEELRKILDnykNSLYKP------LIFIDEIHRLS--------KTQQEmlliPMENY 114
Cdd:PRK12323 83 acteidagrfVDYIEMDAAsNRGVDEMAQLLD---KAVYAPtagrfkVYMIDEVHMLTnhafnamlKTLEE----PPEHV 155
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 488943260 115 RLILigASTEN---PYFVLssgirSRSMLFEFKSLGVKELETLLLRV--QEKMKF 164
Cdd:PRK12323 156 KFIL--ATTDPqkiPVTVL-----SRCLQFNLKQMPPGHIVSHLDAIlgEEGIAH 203
|
|
| PRK07994 |
PRK07994 |
DNA polymerase III subunits gamma and tau; Validated |
1-101 |
2.06e-06 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236138 [Multi-domain] Cd Length: 647 Bit Score: 49.86 E-value: 2.06e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488943260 1 MS---LALTFRPENFDDILGQyELIeifkkFTAL------QKLPHSIFF-GTAGSGKTTFARVVAKefGLD--------- 61
Cdd:PRK07994 1 MSyqvLARKWRPQTFAEVVGQ-EHV-----LTALanaldlGRLHHAYLFsGTRGVGKTTIARLLAK--GLNcetgitatp 72
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 488943260 62 ------FYEFDGGNF------------KLEELRKILDNYKnslYKP--------LifIDEIHRLSK 101
Cdd:PRK07994 73 cgecdnCREIEQGRFvdlieidaasrtKVEDTRELLDNVQ---YAPargrfkvyL--IDEVHMLSR 133
|
|
| PRK06645 |
PRK06645 |
DNA polymerase III subunits gamma and tau; Validated |
4-188 |
2.39e-06 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 180643 [Multi-domain] Cd Length: 507 Bit Score: 49.47 E-value: 2.39e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488943260 4 ALTFRPENFDDILGQYELIEIFKKFTALQKLPHS-IFFGTAGSGKTTFARVVAKEFGL---------------------- 60
Cdd:PRK06645 12 ARKYRPSNFAELQGQEVLVKVLSYTILNDRLAGGyLLTGIRGVGKTTSARIIAKAVNCsalitenttiktceqctncisf 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488943260 61 ------DFYEFDGGN-FKLEELRKILDNyknSLYKPLI------FIDEIHRLSKTQQEMLLIPMEN--YRLILIGASTEN 125
Cdd:PRK06645 92 nnhnhpDIIEIDAASkTSVDDIRRIIES---AEYKPLQgkhkifIIDEVHMLSKGAFNALLKTLEEppPHIIFIFATTEV 168
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 488943260 126 PYFVLSsgIRSRSMLFEFKSLGVKELETLLLRVQEKMKFSIDKEAKDFLLKSAD--ARAMLNLLE 188
Cdd:PRK06645 169 QKIPAT--IISRCQRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYKSEgsARDAVSILD 231
|
|
| RecA-like_VPS4-like |
cd19509 |
ATPase domain of VPS4, ATAD1, K, KTNA1, Spastin, FIGL-1 and similar ATPase domains; This ... |
28-122 |
1.54e-05 |
|
ATPase domain of VPS4, ATAD1, K, KTNA1, Spastin, FIGL-1 and similar ATPase domains; This subfamily includes the ATPase domains of vacuolar protein sorting-associated protein 4 (VPS4), ATPase family AAA domain-containing protein 1 (ATAD1, also known as Thorase), Katanin p60 ATPase-containing subunit A1 (KTNA1), Spastin, and Fidgetin-Like 1 (FIGL-1). This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410917 [Multi-domain] Cd Length: 163 Bit Score: 44.65 E-value: 1.54e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488943260 28 FTALQKLPHSI-FFGTAGSGKTTFARVVAKEFGLDFYEFDGGNFK---LEELRKILDNYKN--SLYKP-LIFIDEI---- 96
Cdd:cd19509 25 FPGLRGPPRGIlLYGPPGTGKTLLARAVASESGSTFFSISASSLVskwVGESEKIVRALFAlaRELQPsIIFIDEIdsll 104
|
90 100 110
....*....|....*....|....*....|....*....
gi 488943260 97 -------HRLSKTQQEMLLIPM------ENYRLILIGAS 122
Cdd:cd19509 105 sergsgeHEASRRVKTEFLVQMdgvlnkPEDRVLVLGAT 143
|
|
| RecA-like_FtsH |
cd19501 |
ATP-dependent zinc metalloprotease FtsH; FtsH ATPase is a processive, ATP-dependent zinc ... |
12-96 |
1.82e-04 |
|
ATP-dependent zinc metalloprotease FtsH; FtsH ATPase is a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. It is anchored to the cytoplasmic membrane such that the amino- and carboxy-termini are exposed to the cytoplasm. It presents a membrane-bound hexameric structure that is able to unfold and degrade protein substrates. It is comprised of an N-terminal transmembrane region and the larger C-terminal cytoplasmic region, which consists of an ATPase domain and a protease domain. This RecA-Like FTsH subfamily represents the ATPase domain, and belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410909 [Multi-domain] Cd Length: 171 Bit Score: 41.83 E-value: 1.82e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488943260 12 FDDILGQ-------YELIEIFK---KFTAL-QKLPHSI-FFGTAGSGKTTFARVVAKEFGLDFYEFDGGNFkLE------ 73
Cdd:cd19501 3 FKDVAGCeeakeelKEVVEFLKnpeKFTKLgAKIPKGVlLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDF-VEmfvgvg 81
|
90 100
....*....|....*....|....*.
gi 488943260 74 --ELRKILDNYKNSlyKP-LIFIDEI 96
Cdd:cd19501 82 asRVRDLFEQAKKN--APcIVFIDEI 105
|
|
| RecA-like_CDC48_NLV2_r1-like |
cd19503 |
first of two ATPase domains of CDC48 and NLV2, and similar ATPase domains; CDC48 in yeast and ... |
20-96 |
2.31e-04 |
|
first of two ATPase domains of CDC48 and NLV2, and similar ATPase domains; CDC48 in yeast and p97 or VCP metazoans is an ATP-dependent molecular chaperone which plays an essential role in many cellular processes, by segregating polyubiquitinated proteins from complexes or membranes. Cdc48/p97 consists of an N-terminal domain and two ATPase domains; this subfamily represents the first of the two ATPase domains. This subfamily also includes the first of the two ATPase domains of NVL (nuclear VCP-like protein) 2, an isoform of NVL mainly present in the nucleolus, which is involved in ribosome biogenesis, in telomerase assembly and the regulation of telomerase activity, and in pre-rRNA processing. This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410911 [Multi-domain] Cd Length: 165 Bit Score: 41.51 E-value: 2.31e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488943260 20 ELIEI-FKKFTALQKL----PHSI-FFGTAGSGKTTFARVVAKEFGLDFYEFDG--------GNFKlEELRKILDNYKNs 85
Cdd:cd19503 14 ELIELpLKYPELFRALglkpPRGVlLHGPPGTGKTLLARAVANEAGANFLSISGpsivskylGESE-KNLREIFEEARS- 91
|
90
....*....|..
gi 488943260 86 lYKP-LIFIDEI 96
Cdd:cd19503 92 -HAPsIIFIDEI 102
|
|
| RNA_helicase |
pfam00910 |
RNA helicase; This family includes RNA helicases thought to be involved in duplex unwinding ... |
38-125 |
2.33e-04 |
|
RNA helicase; This family includes RNA helicases thought to be involved in duplex unwinding during viral RNA replication. Members of this family are found in a variety of single stranded RNA viruses.
Pssm-ID: 459992 Cd Length: 102 Bit Score: 39.90 E-value: 2.33e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488943260 38 IFFGTAGSGKTTFARVVAKEFgLDFYEFDGGNFKLEELR-KILDNYKNSlykPLIFIDEIHRLSKTQQEMLLIPM-ENYR 115
Cdd:pfam00910 2 WLYGPPGCGKSTLAKYLARAL-LKKLGLPKDSVYSRNPDdDFWDGYTGQ---PVVIIDDFGQNPDGPDEAELIRLvSSTP 77
|
90
....*....|
gi 488943260 116 LILIGASTEN 125
Cdd:pfam00910 78 YPPPMAALEE 87
|
|
| CMPK |
cd02020 |
Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine ... |
41-74 |
2.70e-04 |
|
Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Pssm-ID: 238978 [Multi-domain] Cd Length: 147 Bit Score: 40.93 E-value: 2.70e-04
10 20 30
....*....|....*....|....*....|....
gi 488943260 41 GTAGSGKTTFARVVAKEFGLDFYefDGGNFKLEE 74
Cdd:cd02020 6 GPAGSGKSTVAKLLAKKLGLPYL--DTGGIRTEE 37
|
|
| GntK |
COG3265 |
Gluconate kinase [Carbohydrate transport and metabolism]; Gluconate kinase is part of the ... |
38-66 |
4.05e-04 |
|
Gluconate kinase [Carbohydrate transport and metabolism]; Gluconate kinase is part of the Pathway/BioSystem: Non-phosphorylated Entner-Doudoroff pathway
Pssm-ID: 442496 [Multi-domain] Cd Length: 164 Bit Score: 40.50 E-value: 4.05e-04
10 20
....*....|....*....|....*....
gi 488943260 38 IFFGTAGSGKTTFARVVAKEFGLDFYEFD 66
Cdd:COG3265 5 VVMGVSGSGKSTVGQALAERLGWPFIDGD 33
|
|
| RecA-like_ATAD3-like |
cd19512 |
ATPase domains of ATPase AAA-domain protein 3A (ATAD3A), -3B, and -3C, and similar ATPase ... |
36-95 |
5.14e-04 |
|
ATPase domains of ATPase AAA-domain protein 3A (ATAD3A), -3B, and -3C, and similar ATPase domains; ATPase AAA-domain protein 3 (ATAD3) is a ubiquitously expressed mitochondrial protein involved in mitochondrial dynamics, DNA-nucleoid structural organization, cholesterol transport and steroidogenesis. The ATAD3 gene family in human comprises three paralog genes: ATAD3A, ATAD3B and ATAD3C. This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410920 [Multi-domain] Cd Length: 150 Bit Score: 40.20 E-value: 5.14e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 488943260 36 HSIFFGTAGSGKTTFARVVAKEFGLDFYEFDGGNFK------LEELRKILDNYKNSLYKPLIFIDE 95
Cdd:cd19512 24 NILFYGPPGTGKTLFAKKLALHSGMDYAIMTGGDVApmgregVTAIHKVFDWANTSRRGLLLFVDE 89
|
|
| RPT1 |
COG1222 |
ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein ... |
12-96 |
6.51e-04 |
|
ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440835 [Multi-domain] Cd Length: 326 Bit Score: 41.53 E-value: 6.51e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488943260 12 FDDILGQYELI--------------EIFKKFTAlqKLPHSI-FFGTAGSGKTTFARVVAKEFGLDFYEFDGGNF--KL-- 72
Cdd:COG1222 77 FDDIGGLDEQIeeireavelplknpELFRKYGI--EPPKGVlLYGPPGTGKTLLAKAVAGELGAPFIRVRGSELvsKYig 154
|
90 100
....*....|....*....|....*...
gi 488943260 73 ---EELRKILDNYKNSlyKP-LIFIDEI 96
Cdd:COG1222 155 egaRNVREVFELAREK--APsIIFIDEI 180
|
|
| HLD_clamp_RarA |
cd18139 |
helical lid domain of recombination factor protein RarA; Recombination factor RarA ... |
150-206 |
8.03e-04 |
|
helical lid domain of recombination factor protein RarA; Recombination factor RarA (Replication associated recombination gene/protein A, also known as MgsA (Maintenance of genome stability A) or Mgs1 in yeast and WRNIP1 in mammals) is a member of the clamp-loader clade of the AAA+ superfamily. It functions as a tetramer. RarA co-localize with the replication fork throughout the cell cycle and may play a role in the rescue of stalled replication forks.
Pssm-ID: 350841 [Multi-domain] Cd Length: 75 Bit Score: 37.61 E-value: 8.03e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 488943260 150 ELETLLLRVQE------KMKFSIDKEAKDFLLKSA--DARAMLNLLEFVLVLDE----KHISLENLKKL 206
Cdd:cd18139 5 DLEKLLKRALEdkerggDRKVTIDDEALELLAEAAdgDARSALNLLELAVLSAEedggIVITLEDLEEV 73
|
|
| CDC48 |
TIGR01243 |
AAA family ATPase, CDC48 subfamily; This subfamily of the AAA family ATPases includes two ... |
23-122 |
1.39e-03 |
|
AAA family ATPase, CDC48 subfamily; This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Pssm-ID: 273521 [Multi-domain] Cd Length: 733 Bit Score: 40.66 E-value: 1.39e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488943260 23 EIFKKFtALQKLPHSIFFGTAGSGKTTFARVVAKEFGLDFYEFDGGNF-------KLEELRKILDNYKNSLyKPLIFIDE 95
Cdd:TIGR01243 202 ELFEHL-GIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEImskyygeSEERLREIFKEAEENA-PSIIFIDE 279
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 488943260 96 IHRLSKTQQEM-----------LLIPMENY----RLILIGAS 122
Cdd:TIGR01243 280 IDAIAPKREEVtgevekrvvaqLLTLMDGLkgrgRVIVIGAT 321
|
|
| COG1373 |
COG1373 |
Predicted ATPase, AAA+ superfamily [General function prediction only]; |
44-99 |
1.67e-03 |
|
Predicted ATPase, AAA+ superfamily [General function prediction only];
Pssm-ID: 440984 [Multi-domain] Cd Length: 405 Bit Score: 40.31 E-value: 1.67e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 488943260 44 GSGKTTFARVVAKEFG----LDFYEFDGGNFKLEELRKILDNYKNSLYKP-LIFIDEIHRL 99
Cdd:COG1373 30 QVGKTTLLKQLAKELEnilyINLDDPRLRALAEEDPDDLLEALKELYPGKtYLFLDEIQRV 90
|
|
| PRK09111 |
PRK09111 |
DNA polymerase III subunits gamma and tau; Validated |
3-170 |
1.78e-03 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236382 [Multi-domain] Cd Length: 598 Bit Score: 40.27 E-value: 1.78e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488943260 3 LALTFRPENFDDILGQYELIEIFKKFTALQKLPHS-IFFGTAGSGKTTFARVVAKefGLDfYEFDGGNFK---------- 71
Cdd:PRK09111 14 LARKYRPQTFDDLIGQEAMVRTLTNAFETGRIAQAfMLTGVRGVGKTTTARILAR--ALN-YEGPDGDGGptidlcgvge 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488943260 72 -------------LE----------ELRKILD--NYK--NSLYKPLIfIDEIHRLS--------KTQQEmlliPMENYRL 116
Cdd:PRK09111 91 hcqaimegrhvdvLEmdaashtgvdDIREIIEsvRYRpvSARYKVYI-IDEVHMLStaafnallKTLEE----PPPHVKF 165
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 488943260 117 ILigASTEnpyfvlssgIR-------SRSMLFEFKSLGVKELETLLLRVQEKMKFSIDKEA 170
Cdd:PRK09111 166 IF--ATTE---------IRkvpvtvlSRCQRFDLRRIEADVLAAHLSRIAAKEGVEVEDEA 215
|
|
| DNA_pol3_delta2 |
pfam13177 |
DNA polymerase III, delta subunit; DNA polymerase III, delta subunit (EC 2.7.7.7) is required ... |
17-146 |
2.18e-03 |
|
DNA polymerase III, delta subunit; DNA polymerase III, delta subunit (EC 2.7.7.7) is required for, along with delta' subunit, the assembly of the processivity factor beta(2) onto primed DNA in the DNA polymerase III holoenzyme-catalyzed reaction. The delta subunit is also known as HolA.
Pssm-ID: 433013 [Multi-domain] Cd Length: 161 Bit Score: 38.35 E-value: 2.18e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488943260 17 GQYELIEIFKKFTALQKLPHS-IFFGTAGSGKTTFARVVAKEFgldFYEFDGGNF---KLEELRKILD-NYKNSLY---- 87
Cdd:pfam13177 1 GQPEAIQLLQNSLENGRLSHAyLFSGPEGVGKLELALAFAKAL---FCEEPGDDLpcgQCRSCRRIESgNHPDLVIiepe 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488943260 88 KPLIFIDEIHRLsktQQEMLLIPME-NYRLILI--------GAS-------------------TENPYFVLSSgIRSRSM 139
Cdd:pfam13177 78 GQSIKIDQIREL---QKEFSKSPYEgKKKVYIIedaekmtaSAAnsllkfleeppgntviillTENPSRLLPT-IRSRCQ 153
|
....*..
gi 488943260 140 LFEFKSL 146
Cdd:pfam13177 154 IIRFKPL 160
|
|
| AAA_14 |
pfam13173 |
AAA domain; This family of domains contain a P-loop motif that is characteriztic of the AAA ... |
44-98 |
3.17e-03 |
|
AAA domain; This family of domains contain a P-loop motif that is characteriztic of the AAA superfamily.
Pssm-ID: 463799 [Multi-domain] Cd Length: 128 Bit Score: 37.57 E-value: 3.17e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 488943260 44 GSGKTTFARVVAKEFGLD----FYEFDGGNFKLEELRKILDNYKNSLY--KPLIFIDEIHR 98
Cdd:pfam13173 12 QVGKTTLLLQLIKELLPPenilYINLDDPRLLKLADFELLELFLELLYpgKTYLFLDEIQR 72
|
|
| PRK04132 |
PRK04132 |
replication factor C small subunit; Provisional |
7-70 |
3.25e-03 |
|
replication factor C small subunit; Provisional
Pssm-ID: 235223 [Multi-domain] Cd Length: 846 Bit Score: 39.82 E-value: 3.25e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488943260 7 FRPENFDDILGQYELIEIFKKFTALQKLPHSIFFGTAGSGK--TTFARVVA----KEFGLDFYEFDGGNF 70
Cdd:PRK04132 13 YRPQRLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKclTGDTKVIAngelFEIGELVEKISNGKF 82
|
|
| MoxR |
COG0714 |
MoxR-like ATPase [General function prediction only]; MoxR-like ATPase is part of the Pathway ... |
41-130 |
4.25e-03 |
|
MoxR-like ATPase [General function prediction only]; MoxR-like ATPase is part of the Pathway/BioSystem: Cobalamine/B12 biosynthesis
Pssm-ID: 440478 [Multi-domain] Cd Length: 292 Bit Score: 38.61 E-value: 4.25e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488943260 41 GTAGSGKTTFARVVAKEFGLDF-------------------YEFDGGNFKLEElRKILDNyknslykpLIFIDEIHRLS- 100
Cdd:COG0714 38 GVPGVGKTTLAKALARALGLPFiriqftpdllpsdilgtyiYDQQTGEFEFRP-GPLFAN--------VLLADEINRAPp 108
|
90 100 110
....*....|....*....|....*....|....*...
gi 488943260 101 KTQ-------QEM-LLIPMENYRLiligastENPYFVL 130
Cdd:COG0714 109 KTQsalleamEERqVTIPGGTYKL-------PEPFLVI 139
|
|
| RecA-like_VPS4 |
cd19521 |
ATPase domain of vacuolar protein sorting-associated protein 4; Vacuolar protein ... |
12-137 |
6.09e-03 |
|
ATPase domain of vacuolar protein sorting-associated protein 4; Vacuolar protein sorting-associated protein 4 (Vps4) is believed to be involved in intracellular protein transport out of a prevacuolar endosomal compartment. This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410929 [Multi-domain] Cd Length: 170 Bit Score: 37.15 E-value: 6.09e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488943260 12 FDDILGQYELIEIFKKFTALQ-KLPHS-----------IFFGTAGSGKTTFARVVAKEFGLDFYEFDGGNF------KLE 73
Cdd:cd19521 6 WEDVAGLEGAKEALKEAVILPvKFPHLftgnrkpwsgiLLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLvskwmgESE 85
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 488943260 74 ELRKILDNYKNSLYKPLIFIDEIHRLSKTQQE-----------MLLIPME----NYRLILIGASTENPYfVLSSGIRSR 137
Cdd:cd19521 86 KLVKQLFAMARENKPSIIFIDEVDSLCGTRGEgeseasrriktELLVQMNgvgnDSQGVLVLGATNIPW-QLDSAIRRR 163
|
|
| |
