MULTISPECIES: Jag N-terminal domain-containing protein [Campylobacter]
Protein Classification
List of domain hits
| Name | Accession | Description | Interval | E-value | ||
| HP1451_C | pfam18472 | HP1451 C-terminal domain; HP1451 modulates the ATPase activity of HP0525 H. pylori. It is ... |
200-265 | 1.90e-29 | ||
HP1451 C-terminal domain; HP1451 modulates the ATPase activity of HP0525 H. pylori. It is suggested that HP1451 acts as an inhibitory factor of HP0525 to regulate Cag-mediated secretion. It consists of two domains. The two HP1451 domains (referred to as the KH-domain and S8-domain) interact with each other via two salt bridges. The second domain is structurally homologous to other nucleic acid-binding proteins such as the NTD of ribosomal protein S8 and DNaseI. : Pssm-ID: 465781 Cd Length: 67 Bit Score: 106.13 E-value: 1.90e-29
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| Jag_N | pfam14804 | Jag N-terminus; This domain is found at the N-terminus of proteins containing pfam13083 and ... |
4-51 | 2.23e-10 | ||
Jag N-terminus; This domain is found at the N-terminus of proteins containing pfam13083 and pfam01424, including the jag proteins. : Pssm-ID: 464324 Cd Length: 50 Bit Score: 54.69 E-value: 2.23e-10
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| KH-I super family | cl00098 | K homology (KH) RNA-binding domain, type I; KH binds single-stranded RNA or DNA. It is found ... |
148-202 | 1.04e-03 | ||
K homology (KH) RNA-binding domain, type I; KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. There are two different KH domains that belong to different protein folds, but they share a single KH motif. The KH motif is folded into a beta alpha alpha beta unit. In addition to the core, type II KH domains (e.g. ribosomal protein S3) include an N-terminal extension and type I KH domains (e.g. hnRNP K) contain a C-terminal extension. Some KH-I superfamily members contain a divergent KH domain that lacks the RNA-binding GXXG motif. Some others have a mutated GXXG motif which may or may not have nucleic acid binding ability. The actual alignment was detected with superfamily member cd02414: Pssm-ID: 469614 Cd Length: 79 Bit Score: 37.12 E-value: 1.04e-03
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| Name | Accession | Description | Interval | E-value | ||
| HP1451_C | pfam18472 | HP1451 C-terminal domain; HP1451 modulates the ATPase activity of HP0525 H. pylori. It is ... |
200-265 | 1.90e-29 | ||
HP1451 C-terminal domain; HP1451 modulates the ATPase activity of HP0525 H. pylori. It is suggested that HP1451 acts as an inhibitory factor of HP0525 to regulate Cag-mediated secretion. It consists of two domains. The two HP1451 domains (referred to as the KH-domain and S8-domain) interact with each other via two salt bridges. The second domain is structurally homologous to other nucleic acid-binding proteins such as the NTD of ribosomal protein S8 and DNaseI. Pssm-ID: 465781 Cd Length: 67 Bit Score: 106.13 E-value: 1.90e-29
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| Jag_N | pfam14804 | Jag N-terminus; This domain is found at the N-terminus of proteins containing pfam13083 and ... |
4-51 | 2.23e-10 | ||
Jag N-terminus; This domain is found at the N-terminus of proteins containing pfam13083 and pfam01424, including the jag proteins. Pssm-ID: 464324 Cd Length: 50 Bit Score: 54.69 E-value: 2.23e-10
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| Jag_EloR | NF041568 | RNA-binding cell elongation regulator Jag/EloR; Members of this family are nucleic ... |
4-64 | 2.19e-06 | ||
RNA-binding cell elongation regulator Jag/EloR; Members of this family are nucleic acid-binding proteins (RNA or single-stranded DNA) with a KH domain at the N-terminus, an R3H domain at the C-terminus, and additional regions of homology. The founding member of this family was JAG (spoIIIJ Associated Gene) from Bacillus subtilis, but later work in other lineages, such as Streptococcus pneumoniae, as established a role in controlling cell elongation and the operation of the elongasome. The S. pneumoniae protein, a protein that undergoes regulatory phosphorylation and dephosphorylation, is also called RNA-binding cell elongation regulator EloR, and also KhpB. Pssm-ID: 469453 [Multi-domain] Cd Length: 203 Bit Score: 47.04 E-value: 2.19e-06
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| KH-II_Jag | cd02414 | type II K-homology (KH) RNA-binding domain found in protein Jag and similar proteins; Protein ... |
148-202 | 1.04e-03 | ||
type II K-homology (KH) RNA-binding domain found in protein Jag and similar proteins; Protein Jag, also called SpoIIIJ-associated protein, is associated with SpoIIIJ and is necessary for the third stage of sporulation. Members of this family are mainly from bacteria and contain only one canonical type II K-homology (KH) domain that has the signature motif GXXG (where X represents any amino acid). Pssm-ID: 411785 Cd Length: 79 Bit Score: 37.12 E-value: 1.04e-03
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| Name | Accession | Description | Interval | E-value | ||
| HP1451_C | pfam18472 | HP1451 C-terminal domain; HP1451 modulates the ATPase activity of HP0525 H. pylori. It is ... |
200-265 | 1.90e-29 | ||
HP1451 C-terminal domain; HP1451 modulates the ATPase activity of HP0525 H. pylori. It is suggested that HP1451 acts as an inhibitory factor of HP0525 to regulate Cag-mediated secretion. It consists of two domains. The two HP1451 domains (referred to as the KH-domain and S8-domain) interact with each other via two salt bridges. The second domain is structurally homologous to other nucleic acid-binding proteins such as the NTD of ribosomal protein S8 and DNaseI. Pssm-ID: 465781 Cd Length: 67 Bit Score: 106.13 E-value: 1.90e-29
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| Jag_N | pfam14804 | Jag N-terminus; This domain is found at the N-terminus of proteins containing pfam13083 and ... |
4-51 | 2.23e-10 | ||
Jag N-terminus; This domain is found at the N-terminus of proteins containing pfam13083 and pfam01424, including the jag proteins. Pssm-ID: 464324 Cd Length: 50 Bit Score: 54.69 E-value: 2.23e-10
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| Jag_EloR | NF041568 | RNA-binding cell elongation regulator Jag/EloR; Members of this family are nucleic ... |
4-64 | 2.19e-06 | ||
RNA-binding cell elongation regulator Jag/EloR; Members of this family are nucleic acid-binding proteins (RNA or single-stranded DNA) with a KH domain at the N-terminus, an R3H domain at the C-terminus, and additional regions of homology. The founding member of this family was JAG (spoIIIJ Associated Gene) from Bacillus subtilis, but later work in other lineages, such as Streptococcus pneumoniae, as established a role in controlling cell elongation and the operation of the elongasome. The S. pneumoniae protein, a protein that undergoes regulatory phosphorylation and dephosphorylation, is also called RNA-binding cell elongation regulator EloR, and also KhpB. Pssm-ID: 469453 [Multi-domain] Cd Length: 203 Bit Score: 47.04 E-value: 2.19e-06
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| KH-II_Jag | cd02414 | type II K-homology (KH) RNA-binding domain found in protein Jag and similar proteins; Protein ... |
148-202 | 1.04e-03 | ||
type II K-homology (KH) RNA-binding domain found in protein Jag and similar proteins; Protein Jag, also called SpoIIIJ-associated protein, is associated with SpoIIIJ and is necessary for the third stage of sporulation. Members of this family are mainly from bacteria and contain only one canonical type II K-homology (KH) domain that has the signature motif GXXG (where X represents any amino acid). Pssm-ID: 411785 Cd Length: 79 Bit Score: 37.12 E-value: 1.04e-03
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