NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|488981310|ref|WP_002892142|]
View 

MULTISPECIES: primosomal replication protein N'' [Klebsiella]

Protein Classification

primosomal replication protein N''( domain architecture ID 10013424)

primosomal replication protein N'' (PriC) acts as a scaffold for recruiting DnaB-DnaC to SSB/ssDNA sites present at stalled replication forks

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

Name Accession Description Interval E-value
PRK10093 PRK10093
primosomal replication protein N''; Provisional
5-175 6.71e-78

primosomal replication protein N''; Provisional


:

Pssm-ID: 182236  Cd Length: 171  Bit Score: 229.36  E-value: 6.71e-78
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488981310   5 QLLQTLNDQLSELAALVAPLAEHATLSPRFDRQLFHTRSTLMQAYLAEAQHNFNQLRQAVERQQLPQVVWIAERLAAQIA 84
Cdd:PRK10093   1 LLLEKLEGQLATLRQRCAPLAQHATLSARFDRHLFQTRSTLLQAYLDEAGDNLAALRHAVEQQQLPQVAWLAEHLAAQLE 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488981310  85 ALRRETATWSLRSWDHASPTLSRWQRRRLQHQEYERRLLAMRDQRQRQLAQATSLDEQQRLGKEVEAYSGRLARCRQALD 164
Cdd:PRK10093  81 AIAREAAAWSLREWDSAPPGLARWQRKRIQHQEFERRLLEMVAERRARLARATDLVEQQTLHREVEAYEGRLARCRHALE 160
                        170
                 ....*....|.
gi 488981310 165 KIENVLARLTR 175
Cdd:PRK10093 161 KIENVLARLTR 171
 
Name Accession Description Interval E-value
PRK10093 PRK10093
primosomal replication protein N''; Provisional
5-175 6.71e-78

primosomal replication protein N''; Provisional


Pssm-ID: 182236  Cd Length: 171  Bit Score: 229.36  E-value: 6.71e-78
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488981310   5 QLLQTLNDQLSELAALVAPLAEHATLSPRFDRQLFHTRSTLMQAYLAEAQHNFNQLRQAVERQQLPQVVWIAERLAAQIA 84
Cdd:PRK10093   1 LLLEKLEGQLATLRQRCAPLAQHATLSARFDRHLFQTRSTLLQAYLDEAGDNLAALRHAVEQQQLPQVAWLAEHLAAQLE 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488981310  85 ALRRETATWSLRSWDHASPTLSRWQRRRLQHQEYERRLLAMRDQRQRQLAQATSLDEQQRLGKEVEAYSGRLARCRQALD 164
Cdd:PRK10093  81 AIAREAAAWSLREWDSAPPGLARWQRKRIQHQEFERRLLEMVAERRARLARATDLVEQQTLHREVEAYEGRLARCRHALE 160
                        170
                 ....*....|.
gi 488981310 165 KIENVLARLTR 175
Cdd:PRK10093 161 KIENVLARLTR 171
PriC COG3923
Primosomal replication protein N'' [Replication, recombination and repair];
1-175 1.61e-63

Primosomal replication protein N'' [Replication, recombination and repair];


Pssm-ID: 443127 [Multi-domain]  Cd Length: 179  Bit Score: 193.21  E-value: 1.61e-63
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488981310   1 MKTAQLLQTLNDQLSELAALVAPLAEHATLSPRFDRQLFHTRSTLMQAYLAEAQHNFNQLRQAVERQQLPQVVWIAERLA 80
Cdd:COG3923    1 MKTSQLLQTLEQQLDQLAQQIAPLADHRTLQARFDRQLFSTRSTRLQDYLQEARQNLAQLEQAVEANRTQQVAFLAERLV 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488981310  81 AQIAALRRETATWSLRSWDH--ASPTLSRWQRRRLQHQEYERRLLAMRDQRQRQLAQATSLDEQQRLGKEVEAYSGRLAR 158
Cdd:COG3923   81 AQIAALQRELATQSLRKQEPrsASKPILDLYQKLAQHQEYERRLLAMIRDRESQLEQATTLAEQQRLQKELAALEGRLAR 160
                        170
                 ....*....|....*..
gi 488981310 159 CRQALDKIENVLARLTR 175
Cdd:COG3923  161 CRQALARIERQIERRER 177
PriC pfam07445
Primosomal replication protein priC; This family contains the bacterial primosomal replication ...
8-174 2.11e-48

Primosomal replication protein priC; This family contains the bacterial primosomal replication protein priC. In Escherichia coli, this function in the assembly of the primosome.


Pssm-ID: 429465 [Multi-domain]  Cd Length: 174  Bit Score: 154.73  E-value: 2.11e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488981310    8 QTLNDQLSELAALVAP--LAEHATLSPRFDRQLFHTRSTLMQAYLAEAQHNFNQLRQAVERQQLPQVVWIAERLAAQIAA 85
Cdd:pfam07445   1 SRLEQQLATLEQQAAPhdLAQRQALQARFDRQLFSQRSALLSPYLKEIRHTLKQLEQAVEENRAAQVAFLAERLVAQIEA 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488981310   86 LRRETATWSLRSWDHAS-----PTLSRWQRRRLQHQEYERRLLAMRDQRQRQLAQATSLDEQQRLGKEVEAYSGRLARCR 160
Cdd:pfam07445  81 LQRELATTSLRKKEKAQhsysrKPSHDLYQELAKHQEYERRLLEMIEERELQLEQATSLAEKQKLQKEILALEGRLGRCR 160
                         170
                  ....*....|....
gi 488981310  161 QALDKIENVLARLT 174
Cdd:pfam07445 161 QALSKIERRIERLE 174
 
Name Accession Description Interval E-value
PRK10093 PRK10093
primosomal replication protein N''; Provisional
5-175 6.71e-78

primosomal replication protein N''; Provisional


Pssm-ID: 182236  Cd Length: 171  Bit Score: 229.36  E-value: 6.71e-78
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488981310   5 QLLQTLNDQLSELAALVAPLAEHATLSPRFDRQLFHTRSTLMQAYLAEAQHNFNQLRQAVERQQLPQVVWIAERLAAQIA 84
Cdd:PRK10093   1 LLLEKLEGQLATLRQRCAPLAQHATLSARFDRHLFQTRSTLLQAYLDEAGDNLAALRHAVEQQQLPQVAWLAEHLAAQLE 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488981310  85 ALRRETATWSLRSWDHASPTLSRWQRRRLQHQEYERRLLAMRDQRQRQLAQATSLDEQQRLGKEVEAYSGRLARCRQALD 164
Cdd:PRK10093  81 AIAREAAAWSLREWDSAPPGLARWQRKRIQHQEFERRLLEMVAERRARLARATDLVEQQTLHREVEAYEGRLARCRHALE 160
                        170
                 ....*....|.
gi 488981310 165 KIENVLARLTR 175
Cdd:PRK10093 161 KIENVLARLTR 171
PriC COG3923
Primosomal replication protein N'' [Replication, recombination and repair];
1-175 1.61e-63

Primosomal replication protein N'' [Replication, recombination and repair];


Pssm-ID: 443127 [Multi-domain]  Cd Length: 179  Bit Score: 193.21  E-value: 1.61e-63
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488981310   1 MKTAQLLQTLNDQLSELAALVAPLAEHATLSPRFDRQLFHTRSTLMQAYLAEAQHNFNQLRQAVERQQLPQVVWIAERLA 80
Cdd:COG3923    1 MKTSQLLQTLEQQLDQLAQQIAPLADHRTLQARFDRQLFSTRSTRLQDYLQEARQNLAQLEQAVEANRTQQVAFLAERLV 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488981310  81 AQIAALRRETATWSLRSWDH--ASPTLSRWQRRRLQHQEYERRLLAMRDQRQRQLAQATSLDEQQRLGKEVEAYSGRLAR 158
Cdd:COG3923   81 AQIAALQRELATQSLRKQEPrsASKPILDLYQKLAQHQEYERRLLAMIRDRESQLEQATTLAEQQRLQKELAALEGRLAR 160
                        170
                 ....*....|....*..
gi 488981310 159 CRQALDKIENVLARLTR 175
Cdd:COG3923  161 CRQALARIERQIERRER 177
PriC pfam07445
Primosomal replication protein priC; This family contains the bacterial primosomal replication ...
8-174 2.11e-48

Primosomal replication protein priC; This family contains the bacterial primosomal replication protein priC. In Escherichia coli, this function in the assembly of the primosome.


Pssm-ID: 429465 [Multi-domain]  Cd Length: 174  Bit Score: 154.73  E-value: 2.11e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488981310    8 QTLNDQLSELAALVAP--LAEHATLSPRFDRQLFHTRSTLMQAYLAEAQHNFNQLRQAVERQQLPQVVWIAERLAAQIAA 85
Cdd:pfam07445   1 SRLEQQLATLEQQAAPhdLAQRQALQARFDRQLFSQRSALLSPYLKEIRHTLKQLEQAVEENRAAQVAFLAERLVAQIEA 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488981310   86 LRRETATWSLRSWDHAS-----PTLSRWQRRRLQHQEYERRLLAMRDQRQRQLAQATSLDEQQRLGKEVEAYSGRLARCR 160
Cdd:pfam07445  81 LQRELATTSLRKKEKAQhsysrKPSHDLYQELAKHQEYERRLLEMIEERELQLEQATSLAEKQKLQKEILALEGRLGRCR 160
                         170
                  ....*....|....
gi 488981310  161 QALDKIENVLARLT 174
Cdd:pfam07445 161 QALSKIERRIERLE 174
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH