HTH-type transcriptional regulator CecR/YbiH regulates transcription of the cecR-ybhGFSR operon and the rhlE gene, which altogether are involved in the control of sensitivity to cefoperazone and chloramphenicol
HTH-type transcriptional dual regulator CecR, C-terminal domain; This entry represents the ...
90-213
9.47e-42
HTH-type transcriptional dual regulator CecR, C-terminal domain; This entry represents the C-terminal domain found in CecR (regulator of cefoperazone and chloramphenicol sensitivity), previously known as YbiH. CecR has been shown to control sensitivity to cefoperazone and chloramphenicol through regulating the transcription of the cecR-ybhGFSR operon and the rhlE gene.
Pssm-ID: 430467 Cd Length: 125 Bit Score: 137.80 E-value: 9.47e-42
forespore capture DNA-binding protein RefZ; RefZ (regulator of FtsZ), a DNA-binding protein in ...
9-120
4.63e-07
forespore capture DNA-binding protein RefZ; RefZ (regulator of FtsZ), a DNA-binding protein in the family of TetR/AcrR family transcriptional regulators, participates in septum placement and in chromosome capture during the asymmetrical cell division in endospore formation. The five nearly palindromic DNA motifs (RBMs) to which RefZ binds affect chromosomal localization, not transcription, so RefZ is not considered a transcription factor.
Pssm-ID: 468281 [Multi-domain] Cd Length: 195 Bit Score: 48.29 E-value: 4.63e-07
HTH-type transcriptional dual regulator CecR, C-terminal domain; This entry represents the ...
90-213
9.47e-42
HTH-type transcriptional dual regulator CecR, C-terminal domain; This entry represents the C-terminal domain found in CecR (regulator of cefoperazone and chloramphenicol sensitivity), previously known as YbiH. CecR has been shown to control sensitivity to cefoperazone and chloramphenicol through regulating the transcription of the cecR-ybhGFSR operon and the rhlE gene.
Pssm-ID: 430467 Cd Length: 125 Bit Score: 137.80 E-value: 9.47e-42
forespore capture DNA-binding protein RefZ; RefZ (regulator of FtsZ), a DNA-binding protein in ...
9-120
4.63e-07
forespore capture DNA-binding protein RefZ; RefZ (regulator of FtsZ), a DNA-binding protein in the family of TetR/AcrR family transcriptional regulators, participates in septum placement and in chromosome capture during the asymmetrical cell division in endospore formation. The five nearly palindromic DNA motifs (RBMs) to which RefZ binds affect chromosomal localization, not transcription, so RefZ is not considered a transcription factor.
Pssm-ID: 468281 [Multi-domain] Cd Length: 195 Bit Score: 48.29 E-value: 4.63e-07
Database: CDSEARCH/cdd Low complexity filter: no Composition Based Adjustment: yes E-value threshold: 0.01
References:
Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
of the residues that compose this conserved feature have been mapped to the query sequence.
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Functional characterization of the conserved domain architecture found on the query.
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if a domain or superfamily has been annotated with functional sites (conserved features),
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The table lists conserved domains identified on the query sequence. Click on the plus sign (+) on the left to display full descriptions, alignments, and scores.
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Concise Display shows only the best scoring domain model, in each hit category listed below except non-specific hits, for each region on the query sequence.
(labeled illustration) Standard Display shows only the best scoring domain model from each source, in each hit category listed below for each region on the query sequence.
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specific hits meet or exceed a domain-specific e-value threshold
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and represent a very high confidence that the query sequence belongs to the same protein family as the sequences use to create the domain model
non-specific hits
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the domain superfamily to which the specific and non-specific hits belong
multi-domain models that were computationally detected and are likely to contain multiple single domains
Retrieve proteins that contain one or more of the domains present in the query sequence, using the Conserved Domain Architecture Retrieval Tool
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