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Conserved domains on  [gi|489003398|ref|WP_002914020|]
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MULTISPECIES: DUF5107 domain-containing protein [Klebsiella]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF5107 super family cl28815
Domain of unknown function (DUF5107); This family is found in range of different bacterial ...
 41-344 1.74e-69

Domain of unknown function (DUF5107); This family is found in range of different bacterial species. In many proteins it lies N-terminal to a TPR-repeat region at the C-terminus.


The actual alignment was detected with superfamily member pfam17128:

Pssm-ID: 407262  Cd Length: 300  Bit Score: 234.39  E-value: 1.74e-69
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489003398    41 VYPYGVIDTLTGEREMRDYQAVWMENDFLRVMLLPELGGRIHRAYDKVKQRDFVYYNEVVKPALVGLLGPWISGGIEFNW 120
Cdd:pfam17128    6 VYPY*VFSGYSNKPVPKRWR*ISLENEYLKAIVLPDLGGKVISATEKSSGEEFLYRNDVIKFRRIGPRGPWTAGGIEVNF 85

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489003398   121 PQHHRPTTFKPVDFSIQQGENGAqTVWMGEAEPMRGLQVMAGFTLYPDRALIEITGKIFngNATPRH--FLWWANPAVKG 198
Cdd:pfam17128   86 PIGHSPTTASPVDYQIDHTADST-TVTVGERDLHSGTQWRVEISLPKDKACLEQRVVWY--NPGPLRqpYYSWSNAALPC 162

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489003398   199 GDAHQSVFPPDVTAVFDHGKRDVSAFPIAtgiyykvdySAGVDISRYKNVPVPTSYMAEKSDYDFVGAYHHDERGGLLHV 278
Cdd:pfam17128  163 ADDTQFDFPGGTKTEHSHHEGDIKEWPVG---------*TGLDRSFYKNNNVGGGKSAHGSRENAFGGYTPSLGSGFGHI 233

                          250       260       270       280       290       300
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 489003398   279 ADHHVSPGKKQWSWGYGDFGQAWDRNLTDENGPYIELMTGVFTDNQPDFTWLAPYEEKVFVQNFLP 344
Cdd:pfam17128  234 ADYSDTPGKKLWSWGRARDGKIWEDLLTDDDGQYVEIQAGPILNQSIKLELLRPGESKNHTEYWIP 299
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 744-1003 3.88e-16

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


:

Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 79.77  E-value: 3.88e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489003398  744 AFARYLLGCFWYSKRRYDEAVSCWRETLEKSPDYAPAHRLLG-VYSwnKQQDATQALAYLQRAVALEPENARFLFEL--D 820
Cdd:COG2956     8 ALGWYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGnLYR--RRGEYDRAIRIHQKLLERDPDRAEALLELaqD 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489003398  821 FLQKLLARSVHERLTTLVERKAvvlKRDDLTAELLSLWNASGHYADAAAILDTRVfhpweggegKITGQYLLNQLHRALQ 900
Cdd:COG2956    86 YLKAGLLDRAEELLEKLLELDP---DDAEALRLLAEIYEQEGDWEKAIEVLERLL---------KLGPENAHAYCELAEL 153

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489003398  901 FIERGAFKQATDCLKAALRY-PDNLgegrllgqtdnDIWYLLGYCAEQAGDAQQAAEYYQLARQggstldagryYNDQPA 979
Cdd:COG2956   154 YLEQGDYDEAIEALEKALKLdPDCA-----------RALLLLAELYLEQGDYEEAIAALERALE----------QDPDYL 212

                         250       260
                  ....*....|....*....|....
gi 489003398  980 DYLFWQGIALRKSGNPAQAEQYFR 1003
Cdd:COG2956   213 PALPRLAELYEKLGDPEEALELLR 236
PEP_TPR_lipo super family cl37187
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 479-872 1.01e-14

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


The actual alignment was detected with superfamily member TIGR02917:

Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 78.97  E-value: 1.01e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489003398   479 AGDYYRRAVELDPQDYrnnvalgTLAFNSADWALAEQCARAALQRAHR-LNKNPRDGEASMLLASVLERMGDDAGAWDHY 557
Cdd:TIGR02917  484 AREAFEKALSIEPDFF-------PAAANLARIDIQEGNPDDAIQRFEKvLTIDPKNLRAILALAGLYLRTGNEEEAVAWL 556

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489003398   558 YKASWSGNCRDAAWWSLARLAMKRGDVADALEKVNTSLRFNASNPLAMGLKTLALANSGQKKAALEFIFASLEQYPLSYP 637
Cdd:TIGR02917  557 EKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSAL 636

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489003398   638 LHC----ARWMIERSDDARETLLRITGRRGVNASL---LAGWLLSIGQTSAVKEVLAVLDSQEALPMLWRASLSDDANER 710
Cdd:TIGR02917  637 ALLlladAYAVMKNYAKAITSLKRALELKPDNTEAqigLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQ 716

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489003398   711 QQFIAAAEHCHAHNVRFPNSLDEVQMLQSLG--------------------DSAFARYLLGCFWYSKRRYDEAVSCWRET 770
Cdd:TIGR02917  717 KDYPAAIQAYRKALKRAPSSQNAIKLHRALLasgntaeavktleawlkthpNDAVLRTALAELYLAQKDYDKAIKHYQTV 796

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489003398   771 LEKSPDYAPAHRLLgvySW-NKQQDATQALAYLQRAVALEPENARFlfeLDFLQKLLARSVHERLTTLVERKAVVLKRDD 849
Cdd:TIGR02917  797 VKKAPDNAVVLNNL---AWlYLELKDPRALEYAERALKLAPNIPAI---LDTLGWLLVEKGEADRALPLLRKAVNIAPEA 870

                          410       420
                   ....*....|....*....|....*.
gi 489003398   850 LTAEL---LSLWnASGHYADAAAILD 872
Cdd:TIGR02917  871 AAIRYhlaLALL-ATGRKAEARKELD 895
 
Name Accession Description Interval E-value
DUF5107 pfam17128
Domain of unknown function (DUF5107); This family is found in range of different bacterial ...
 41-344 1.74e-69

Domain of unknown function (DUF5107); This family is found in range of different bacterial species. In many proteins it lies N-terminal to a TPR-repeat region at the C-terminus.


Pssm-ID: 407262  Cd Length: 300  Bit Score: 234.39  E-value: 1.74e-69
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489003398    41 VYPYGVIDTLTGEREMRDYQAVWMENDFLRVMLLPELGGRIHRAYDKVKQRDFVYYNEVVKPALVGLLGPWISGGIEFNW 120
Cdd:pfam17128    6 VYPY*VFSGYSNKPVPKRWR*ISLENEYLKAIVLPDLGGKVISATEKSSGEEFLYRNDVIKFRRIGPRGPWTAGGIEVNF 85

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489003398   121 PQHHRPTTFKPVDFSIQQGENGAqTVWMGEAEPMRGLQVMAGFTLYPDRALIEITGKIFngNATPRH--FLWWANPAVKG 198
Cdd:pfam17128   86 PIGHSPTTASPVDYQIDHTADST-TVTVGERDLHSGTQWRVEISLPKDKACLEQRVVWY--NPGPLRqpYYSWSNAALPC 162

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489003398   199 GDAHQSVFPPDVTAVFDHGKRDVSAFPIAtgiyykvdySAGVDISRYKNVPVPTSYMAEKSDYDFVGAYHHDERGGLLHV 278
Cdd:pfam17128  163 ADDTQFDFPGGTKTEHSHHEGDIKEWPVG---------*TGLDRSFYKNNNVGGGKSAHGSRENAFGGYTPSLGSGFGHI 233

                          250       260       270       280       290       300
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 489003398   279 ADHHVSPGKKQWSWGYGDFGQAWDRNLTDENGPYIELMTGVFTDNQPDFTWLAPYEEKVFVQNFLP 344
Cdd:pfam17128  234 ADYSDTPGKKLWSWGRARDGKIWEDLLTDDDGQYVEIQAGPILNQSIKLELLRPGESKNHTEYWIP 299
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 744-1003 3.88e-16

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 79.77  E-value: 3.88e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489003398  744 AFARYLLGCFWYSKRRYDEAVSCWRETLEKSPDYAPAHRLLG-VYSwnKQQDATQALAYLQRAVALEPENARFLFEL--D 820
Cdd:COG2956     8 ALGWYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGnLYR--RRGEYDRAIRIHQKLLERDPDRAEALLELaqD 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489003398  821 FLQKLLARSVHERLTTLVERKAvvlKRDDLTAELLSLWNASGHYADAAAILDTRVfhpweggegKITGQYLLNQLHRALQ 900
Cdd:COG2956    86 YLKAGLLDRAEELLEKLLELDP---DDAEALRLLAEIYEQEGDWEKAIEVLERLL---------KLGPENAHAYCELAEL 153

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489003398  901 FIERGAFKQATDCLKAALRY-PDNLgegrllgqtdnDIWYLLGYCAEQAGDAQQAAEYYQLARQggstldagryYNDQPA 979
Cdd:COG2956   154 YLEQGDYDEAIEALEKALKLdPDCA-----------RALLLLAELYLEQGDYEEAIAALERALE----------QDPDYL 212

                         250       260
                  ....*....|....*....|....
gi 489003398  980 DYLFWQGIALRKSGNPAQAEQYFR 1003
Cdd:COG2956   213 PALPRLAELYEKLGDPEEALELLR 236
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 479-872 1.01e-14

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 78.97  E-value: 1.01e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489003398   479 AGDYYRRAVELDPQDYrnnvalgTLAFNSADWALAEQCARAALQRAHR-LNKNPRDGEASMLLASVLERMGDDAGAWDHY 557
Cdd:TIGR02917  484 AREAFEKALSIEPDFF-------PAAANLARIDIQEGNPDDAIQRFEKvLTIDPKNLRAILALAGLYLRTGNEEEAVAWL 556

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489003398   558 YKASWSGNCRDAAWWSLARLAMKRGDVADALEKVNTSLRFNASNPLAMGLKTLALANSGQKKAALEFIFASLEQYPLSYP 637
Cdd:TIGR02917  557 EKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSAL 636

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489003398   638 LHC----ARWMIERSDDARETLLRITGRRGVNASL---LAGWLLSIGQTSAVKEVLAVLDSQEALPMLWRASLSDDANER 710
Cdd:TIGR02917  637 ALLlladAYAVMKNYAKAITSLKRALELKPDNTEAqigLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQ 716

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489003398   711 QQFIAAAEHCHAHNVRFPNSLDEVQMLQSLG--------------------DSAFARYLLGCFWYSKRRYDEAVSCWRET 770
Cdd:TIGR02917  717 KDYPAAIQAYRKALKRAPSSQNAIKLHRALLasgntaeavktleawlkthpNDAVLRTALAELYLAQKDYDKAIKHYQTV 796

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489003398   771 LEKSPDYAPAHRLLgvySW-NKQQDATQALAYLQRAVALEPENARFlfeLDFLQKLLARSVHERLTTLVERKAVVLKRDD 849
Cdd:TIGR02917  797 VKKAPDNAVVLNNL---AWlYLELKDPRALEYAERALKLAPNIPAI---LDTLGWLLVEKGEADRALPLLRKAVNIAPEA 870

                          410       420
                   ....*....|....*....|....*.
gi 489003398   850 LTAEL---LSLWnASGHYADAAAILD 872
Cdd:TIGR02917  871 AAIRYhlaLALL-ATGRKAEARKELD 895
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
447-658 2.76e-11

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 65.03  E-value: 2.76e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489003398  447 AIAPALPEAIHN-GDELYFIGQHLEqynhasryAGDYYRRAVELDPQDYRNNVALGTLAFNSADWALAEQCARAALQRah 525
Cdd:COG0457     2 ELDPDDAEAYNNlGLAYRRLGRYEE--------AIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALEL-- 71

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489003398  526 rlnkNPRDGEASMLLASVLERMGDDAGAWDHYYKASwSGNCRDA-AWWSLARLAMKRGDVADALEKVNTSLRFNASNPLA 604
Cdd:COG0457    72 ----DPDDAEALNNLGLALQALGRYEEALEDYDKAL-ELDPDDAeALYNLGLALLELGRYDEAIEAYERALELDPDDADA 146

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....
gi 489003398  605 MGLKTLALANSGQKKAALEFIFASLEQYPLSYPLHCARWMIERSDDARETLLRI 658
Cdd:COG0457   147 LYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALL 200
PRK11447 PRK11447
cellulose synthase subunit BcsC; Provisional
 897-1078 6.45e-03

cellulose synthase subunit BcsC; Provisional


Pssm-ID: 183140 [Multi-domain]  Cd Length: 1157  Bit Score: 40.84  E-value: 6.45e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489003398  897 RALQFIERGAFKQATDCLKAALR-YPDnlgegrllgqtDNDIWYLLGYCAEQAGDAQQAAEYYQLARQggstLDAGRYYN 975
Cdd:PRK11447  275 QGLAAVDSGQGGKAIPELQQAVRaNPK-----------DSEALGALGQAYSQQGDRARAVAQFEKALA----LDPHSSNR 339

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489003398  976 DQPADYL----FW----QGIALRKSGNPAQAEQYFRHfidwAAQHRDDvpqvDFFAVslpdLVVLDVSAQQrhqqhclfi 1047
Cdd:PRK11447  340 DKWESLLkvnrYWlliqQGDAALKANNLAQAERLYQQ----ARQVDNT----DSYAV----LGLGDVAMAR--------- 398

                         170       180       190
                  ....*....|....*....|....*....|.
gi 489003398 1048 ealghlglGNVSACQQRMQQLLQINPAHDKA 1078
Cdd:PRK11447  399 --------KDYAAAERYYQQALRMDPGNTNA 421
 
Name Accession Description Interval E-value
DUF5107 pfam17128
Domain of unknown function (DUF5107); This family is found in range of different bacterial ...
 41-344 1.74e-69

Domain of unknown function (DUF5107); This family is found in range of different bacterial species. In many proteins it lies N-terminal to a TPR-repeat region at the C-terminus.


Pssm-ID: 407262  Cd Length: 300  Bit Score: 234.39  E-value: 1.74e-69
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489003398    41 VYPYGVIDTLTGEREMRDYQAVWMENDFLRVMLLPELGGRIHRAYDKVKQRDFVYYNEVVKPALVGLLGPWISGGIEFNW 120
Cdd:pfam17128    6 VYPY*VFSGYSNKPVPKRWR*ISLENEYLKAIVLPDLGGKVISATEKSSGEEFLYRNDVIKFRRIGPRGPWTAGGIEVNF 85

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489003398   121 PQHHRPTTFKPVDFSIQQGENGAqTVWMGEAEPMRGLQVMAGFTLYPDRALIEITGKIFngNATPRH--FLWWANPAVKG 198
Cdd:pfam17128   86 PIGHSPTTASPVDYQIDHTADST-TVTVGERDLHSGTQWRVEISLPKDKACLEQRVVWY--NPGPLRqpYYSWSNAALPC 162

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489003398   199 GDAHQSVFPPDVTAVFDHGKRDVSAFPIAtgiyykvdySAGVDISRYKNVPVPTSYMAEKSDYDFVGAYHHDERGGLLHV 278
Cdd:pfam17128  163 ADDTQFDFPGGTKTEHSHHEGDIKEWPVG---------*TGLDRSFYKNNNVGGGKSAHGSRENAFGGYTPSLGSGFGHI 233

                          250       260       270       280       290       300
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 489003398   279 ADHHVSPGKKQWSWGYGDFGQAWDRNLTDENGPYIELMTGVFTDNQPDFTWLAPYEEKVFVQNFLP 344
Cdd:pfam17128  234 ADYSDTPGKKLWSWGRARDGKIWEDLLTDDDGQYVEIQAGPILNQSIKLELLRPGESKNHTEYWIP 299
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 744-1003 3.88e-16

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 79.77  E-value: 3.88e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489003398  744 AFARYLLGCFWYSKRRYDEAVSCWRETLEKSPDYAPAHRLLG-VYSwnKQQDATQALAYLQRAVALEPENARFLFEL--D 820
Cdd:COG2956     8 ALGWYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGnLYR--RRGEYDRAIRIHQKLLERDPDRAEALLELaqD 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489003398  821 FLQKLLARSVHERLTTLVERKAvvlKRDDLTAELLSLWNASGHYADAAAILDTRVfhpweggegKITGQYLLNQLHRALQ 900
Cdd:COG2956    86 YLKAGLLDRAEELLEKLLELDP---DDAEALRLLAEIYEQEGDWEKAIEVLERLL---------KLGPENAHAYCELAEL 153

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489003398  901 FIERGAFKQATDCLKAALRY-PDNLgegrllgqtdnDIWYLLGYCAEQAGDAQQAAEYYQLARQggstldagryYNDQPA 979
Cdd:COG2956   154 YLEQGDYDEAIEALEKALKLdPDCA-----------RALLLLAELYLEQGDYEEAIAALERALE----------QDPDYL 212

                         250       260
                  ....*....|....*....|....
gi 489003398  980 DYLFWQGIALRKSGNPAQAEQYFR 1003
Cdd:COG2956   213 PALPRLAELYEKLGDPEEALELLR 236
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 479-872 1.01e-14

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 78.97  E-value: 1.01e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489003398   479 AGDYYRRAVELDPQDYrnnvalgTLAFNSADWALAEQCARAALQRAHR-LNKNPRDGEASMLLASVLERMGDDAGAWDHY 557
Cdd:TIGR02917  484 AREAFEKALSIEPDFF-------PAAANLARIDIQEGNPDDAIQRFEKvLTIDPKNLRAILALAGLYLRTGNEEEAVAWL 556

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489003398   558 YKASWSGNCRDAAWWSLARLAMKRGDVADALEKVNTSLRFNASNPLAMGLKTLALANSGQKKAALEFIFASLEQYPLSYP 637
Cdd:TIGR02917  557 EKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSAL 636

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489003398   638 LHC----ARWMIERSDDARETLLRITGRRGVNASL---LAGWLLSIGQTSAVKEVLAVLDSQEALPMLWRASLSDDANER 710
Cdd:TIGR02917  637 ALLlladAYAVMKNYAKAITSLKRALELKPDNTEAqigLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQ 716

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489003398   711 QQFIAAAEHCHAHNVRFPNSLDEVQMLQSLG--------------------DSAFARYLLGCFWYSKRRYDEAVSCWRET 770
Cdd:TIGR02917  717 KDYPAAIQAYRKALKRAPSSQNAIKLHRALLasgntaeavktleawlkthpNDAVLRTALAELYLAQKDYDKAIKHYQTV 796

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489003398   771 LEKSPDYAPAHRLLgvySW-NKQQDATQALAYLQRAVALEPENARFlfeLDFLQKLLARSVHERLTTLVERKAVVLKRDD 849
Cdd:TIGR02917  797 VKKAPDNAVVLNNL---AWlYLELKDPRALEYAERALKLAPNIPAI---LDTLGWLLVEKGEADRALPLLRKAVNIAPEA 870

                          410       420
                   ....*....|....*....|....*.
gi 489003398   850 LTAEL---LSLWnASGHYADAAAILD 872
Cdd:TIGR02917  871 AAIRYhlaLALL-ATGRKAEARKELD 895
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
447-658 2.76e-11

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 65.03  E-value: 2.76e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489003398  447 AIAPALPEAIHN-GDELYFIGQHLEqynhasryAGDYYRRAVELDPQDYRNNVALGTLAFNSADWALAEQCARAALQRah 525
Cdd:COG0457     2 ELDPDDAEAYNNlGLAYRRLGRYEE--------AIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALEL-- 71

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489003398  526 rlnkNPRDGEASMLLASVLERMGDDAGAWDHYYKASwSGNCRDA-AWWSLARLAMKRGDVADALEKVNTSLRFNASNPLA 604
Cdd:COG0457    72 ----DPDDAEALNNLGLALQALGRYEEALEDYDKAL-ELDPDDAeALYNLGLALLELGRYDEAIEAYERALELDPDDADA 146

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....
gi 489003398  605 MGLKTLALANSGQKKAALEFIFASLEQYPLSYPLHCARWMIERSDDARETLLRI 658
Cdd:COG0457   147 LYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALL 200
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 735-1003 1.77e-10

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 63.21  E-value: 1.77e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489003398  735 QMLQSLGDSAFARYLLGCFWYSKRRYDEAVSCWRETLEKSPDYAPAHRLLG-VYSwnKQQDATQALAYLQRAVALEPENA 813
Cdd:COG2956    33 EALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAqDYL--KAGLLDRAEELLEKLLELDPDDA 110

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489003398  814 RFLFEL-DFLQKL----LARSVHERLTTLVERKAVVLkrddltAELLSLWNASGHYADAAAILDTRVfhpweggegKITG 888
Cdd:COG2956   111 EALRLLaEIYEQEgdweKAIEVLERLLKLGPENAHAY------CELAELYLEQGDYDEAIEALEKAL---------KLDP 175

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489003398  889 QYLLNQLHRALQFIERGAFKQATDCLKAALRY-PDNLgegrllgqtdnDIWYLLGYCAEQAGDAQQAAEYYQlarqggst 967
Cdd:COG2956   176 DCARALLLLAELYLEQGDYEEAIAALERALEQdPDYL-----------PALPRLAELYEKLGDPEEALELLR-------- 236

                         250       260       270
                  ....*....|....*....|....*....|....*..
gi 489003398  968 ldagRYYNDQP-ADYLFWQGIALRKSGNPAQAEQYFR 1003
Cdd:COG2956   237 ----KALELDPsDDLLLALADLLERKEGLEAALALLE 269
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
742-1015 3.19e-10

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 61.95  E-value: 3.19e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489003398  742 DSAFARYLLGCFWYSKRRYDEAVSCWRETLEKSPDYAPAHRLLGVySWNKQQDATQALAYLQRAVALEPENARFLFELdf 821
Cdd:COG0457     6 DDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGL-AYLRLGRYEEALADYEQALELDPDDAEALNNL-- 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489003398  822 lqkllarsvherlttlverkAVVLkrddltaellslwNASGHYADAAAILDTRVfhpweggegKITGQYLLNQLHRALQF 901
Cdd:COG0457    83 --------------------GLAL-------------QALGRYEEALEDYDKAL---------ELDPDDAEALYNLGLAL 120

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489003398  902 IERGAFKQATDCLKAALRypdnlgegrlLGQTDNDIWYLLGYCAEQAGDAQQAAEYYQLARQGGSTLDAGRYYNDQPADY 981
Cdd:COG0457   121 LELGRYDEAIEAYERALE----------LDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALAL 190

                         250       260       270
                  ....*....|....*....|....*....|....
gi 489003398  982 LFWQGIALRKSGNPAQAEQYFRHFIDWAAQHRDD 1015
Cdd:COG0457   191 AAAEVLLALLLALEQALRKKLAILTLAALAELLL 224
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 527-1080 5.41e-10

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 63.56  E-value: 5.41e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489003398   527 LNKNPRDGEASMLLASVLERMGDDAGAWDHYYKASWSGNCRDAAWWSLARLAMKRGDVADALEKV-NTSLRFNASNPLAM 605
Cdd:TIGR02917   49 LQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPLLARAYLLQGKFQQVLDELpGKTLLDDEGAAELL 128

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489003398   606 GLKTLALANSGQKKAALEFIFASLEQYPLSYP--LHCARWMIE--RSDDARETLLRITGRRGVNA---SLLAGWLLSIGQ 678
Cdd:TIGR02917  129 ALRGLAYLGLGQLELAQKSYEQALAIDPRSLYakLGLAQLALAenRFDEARALIDEVLTADPGNVdalLLKGDLLLSLGN 208

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489003398   679 ----TSAVKEVLAvLDSQEALPMLWRASLSddaNERQQFIAAAEHCHAHNVRFPNSLdevqmlqslgdsaFARYLLGCFW 754
Cdd:TIGR02917  209 ielaLAAYRKAIA-LRPNNIAVLLALATIL---IEAGEFEEAEKHADALLKKAPNSP-------------LAHYLKALVD 271

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489003398   755 YSKRRYDEAVSCWRETLEKSPDYAPAHRLLGVYSWnKQQDATQALAYLQRAVALEPENarflfelDFLQKLLARS----- 829
Cdd:TIGR02917  272 FQKKNYEDARETLQDALKSAPEYLPALLLAGASEY-QLGNLEQAYQYLNQILKYAPNS-------HQARRLLASIqlrlg 343

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489003398   830 -VHERLTTLverkAVVLKRDDLTAELLSLWN----ASGHYADAAAILDtrvfhpweggegKITGQYLLNQLHR---ALQF 901
Cdd:TIGR02917  344 rVDEAIATL----SPALGLDPDDPAALSLLGeaylALGDFEKAAEYLA------------KATELDPENAAARtqlGISK 407

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489003398   902 IERGAFKQATDCLKAALRYPDNLGEGRLLgqtdndiwYLLGYCAEQAGDAQQAAEYYQLARQGgstldagryynDQPADY 981
Cdd:TIGR02917  408 LSQGDPSEAIADLETAAQLDPELGRADLL--------LILSYLRSGQFDKALAAAKKLEKKQP-----------DNASLH 468

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489003398   982 LFWQGIALrKSGNPAQAEQYFRhfidwaaQHRDDVPqvDFFAvSLPDLVVLDVSAqqrhqqhclfiealghlglGNVSAC 1061
Cdd:TIGR02917  469 NLLGAIYL-GKGDLAKAREAFE-------KALSIEP--DFFP-AAANLARIDIQE-------------------GNPDDA 518

                          570
                   ....*....|....*....
gi 489003398  1062 QQRMQQLLQINPAHDKAHL 1080
Cdd:TIGR02917  519 IQRFEKVLTIDPKNLRAIL 537
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 479-658 6.18e-10

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 61.28  E-value: 6.18e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489003398  479 AGDYYRRAVELDPQDYRNNVALGTLAFNSADWALAEQCARAALQRahrlnkNPRDGEASMLLASVLERMGDDAGAWDHYY 558
Cdd:COG2956    95 AEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKL------GPENAHAYCELAELYLEQGDYDEAIEALE 168

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489003398  559 KA-SWSGNCRDAaWWSLARLAMKRGDVADALEKVNTSLRFNASNPLAMGLKTLALANSGQKKAALEFIFASLEQYPLSYP 637
Cdd:COG2956   169 KAlKLDPDCARA-LLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDL 247

                         170       180
                  ....*....|....*....|....
gi 489003398  638 LHCARWMIERSDD---ARETLLRI 658
Cdd:COG2956   248 LLALADLLERKEGleaALALLERQ 271
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 517-825 1.01e-09

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 60.90  E-value: 1.01e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489003398  517 ARAALQRAHRLNknPRDGEASMLLASVLERMGDDAGAWDHYYKASWSGNCRDAAWWSLARLAMKRGDVADALEKVNTSLR 596
Cdd:COG2956    27 AIDLLEEALELD--PETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLE 104

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489003398  597 FNASNPLAMglktLALANsgqkkaalefIFASLEQYplsyplhcarwmiersDDARETLLRITGRRGVNASLLAGwllsi 676
Cdd:COG2956   105 LDPDDAEAL----RLLAE----------IYEQEGDW----------------EKAIEVLERLLKLGPENAHAYCE----- 149

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489003398  677 gqtsavkevlavldsqealpmlwrasLSDDANERQQFIAAAEHCHahnvrfpnsldevQMLQSLGDSAFARYLLGCFWYS 756
Cdd:COG2956   150 --------------------------LAELYLEQGDYDEAIEALE-------------KALKLDPDCARALLLLAELYLE 190

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 489003398  757 KRRYDEAVSCWRETLEKSPDYAPAHRLLGvYSWNKQQDATQALAYLQRAVALEPENARFLFELDFLQKL 825
Cdd:COG2956   191 QGDYEEAIAALERALEQDPDYLPALPRLA-ELYEKLGDPEEALELLRKALELDPSDDLLLALADLLERK 258
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 447-1070 1.71e-09

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 62.02  E-value: 1.71e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489003398   447 AIAPALPEAIHNGDELYFIGqHLEQYNHASRYAGDYYRRAVELDPQDYRNNVALGTLAFNSADWALAEQCARAALQRAhr 526
Cdd:TIGR02917  181 LIDEVLTADPGNVDALLLKG-DLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKA-- 257

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489003398   527 lnknPRDGEAsmllasvlermgddagawdHYYKAswsgncrdaawwslaRLAMKRGDVADALEKVNTSLRFNASNPLAMG 606
Cdd:TIGR02917  258 ----PNSPLA-------------------HYLKA---------------LVDFQKKNYEDARETLQDALKSAPEYLPALL 299

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489003398   607 LKTLALANSGQKKAALEFIFASLEQYPLSyplHCARWMI-------ERSDDARETLLRITGRRGVNASLLagwllsigqT 679
Cdd:TIGR02917  300 LAGASEYQLGNLEQAYQYLNQILKYAPNS---HQARRLLasiqlrlGRVDEAIATLSPALGLDPDDPAAL---------S 367

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489003398   680 SAVKEVLAVLDSQEALPMLWRASLSD----DANERQ--QFIAAAEHCHAhnvrFPNSLDEVQMLQSLGDsafARYLLGCF 753
Cdd:TIGR02917  368 LLGEAYLALGDFEKAAEYLAKATELDpenaAARTQLgiSKLSQGDPSEA----IADLETAAQLDPELGR---ADLLLILS 440

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489003398   754 WYSKRRYDEAVSCWRETLEKSPDYAPAHRLLGVYSWNKQqDATQALAYLQRAVALEPENARFLFEL---DFLQK--LLAR 828
Cdd:TIGR02917  441 YLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKG-DLAKAREAFEKALSIEPDFFPAAANLariDIQEGnpDDAI 519

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489003398   829 SVHER-LTTLVERKAVVLKrddltaeLLSLWNASGHYADAAAILDTrvfhPWEGGEGKITGQYLLNQLHRALqfierGAF 907
Cdd:TIGR02917  520 QRFEKvLTIDPKNLRAILA-------LAGLYLRTGNEEEAVAWLEK----AAELNPQEIEPALALAQYYLGK-----GQL 583

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489003398   908 KQATDCLK-AALRYPDNLgegrllgqtdnDIWYLLGYCAEQAGDAQQAAEYYQ--LARQGgstldagryynDQPADYLFW 984
Cdd:TIGR02917  584 KKALAILNeAADAAPDSP-----------EAWLMLGRAQLAAGDLNKAVSSFKklLALQP-----------DSALALLLL 641

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489003398   985 QGIALRKSgNPAQAEQYFRHFIDWAAQHRDDVPQVDFFAVSLPDLVVLDVSAQQRHQQHCLfiEALGHLGLGNVSACQQR 1064
Cdd:TIGR02917  642 ADAYAVMK-NYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPK--AALGFELEGDLYLRQKD 718


                   ....*.
gi 489003398  1065 MQQLLQ 1070
Cdd:TIGR02917  719 YPAAIQ 724
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 425-658 5.06e-09

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 60.39  E-value: 5.06e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489003398  425 AENQPLLDYQEHITQQTPLPEPAIAPALPEAIHNGDELYFIGQHLEQYNHASRY--AGDYYRRAVELDPQDYRNNVALGT 502
Cdd:COG3914    41 LGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYeeALALYRRALALNPDNAEALFNLGN 120

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489003398  503 LAFNSADWALAEQCARAALQRahrlnkNPRDGEASMLLASVLERMGDDAGAWDHYYKASwSGNCRDAAWWS-LARLAMKR 581
Cdd:COG3914   121 LLLALGRLEEALAALRRALAL------NPDFAEAYLNLGEALRRLGRLEEAIAALRRAL-ELDPDNAEALNnLGNALQDL 193

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 489003398  582 GDVADALEKVNTSLRFNASNPLAMGLKTLALANSGQKKAALEFIfASLEQYPLSYPLHCARWMIERSDDARETLLRI 658
Cdd:COG3914   194 GRLEEAIAAYRRALELDPDNADAHSNLLFALRQACDWEVYDRFE-ELLAALARGPSELSPFALLYLPDDDPAELLAL 269
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 641-816 6.83e-09

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 60.01  E-value: 6.83e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489003398  641 ARWMIERSDDARETLLRITGRRGVNASLLAGWLLSIGQTSAVKEVL-AVLDSQEALPMLWrASLSDDANERQQFIAAAEH 719
Cdd:COG3914    56 AAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYrRALALNPDNAEAL-FNLGNLLLALGRLEEALAA 134

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489003398  720 CHahnvrfpnsldevQMLQSLGDSAFARYLLGCFWYSKRRYDEAVSCWRETLEKSPDYAPAHRLLGVYsWNKQQDATQAL 799
Cdd:COG3914   135 LR-------------RALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNA-LQDLGRLEEAI 200

                         170
                  ....*....|....*..
gi 489003398  800 AYLQRAVALEPENARFL 816
Cdd:COG3914   201 AAYRRALELDPDNADAH 217
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
487-718 1.59e-08

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 56.55  E-value: 1.59e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489003398  487 VELDPQDYRNNVALGTLAFNSADWALAEQCARAALQRahrlnkNPRDGEASMLLASVLERMGDDAGAWDHYYKASwSGNC 566
Cdd:COG0457     1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALEL------DPDDAEALYNLGLAYLRLGRYEEALADYEQAL-ELDP 73

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489003398  567 RDA-AWWSLARLAMKRGDVADALEKVNTSLRFNASNPLAMGLKTLALANSGQKKAALEFIFASLEQYP----LSYPLHCA 641
Cdd:COG0457    74 DDAeALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPddadALYNLGIA 153

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 489003398  642 RWMIERSDDARETLLRITGRRGVNASLLAGWLLSIGQTSAVKEVLAVLDSQEALPMLWRASLSDDANERQQFIAAAE 718
Cdd:COG0457   154 LEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALL 230
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 470-596 4.48e-08

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 55.89  E-value: 4.48e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489003398  470 EQYNHASRY--AGDYYRRAVELDPQDYRNNVALGTLAFNSADWALAEQCARAALQRahrlnkNPRDGEASMLLASVLERM 547
Cdd:COG2956   152 ELYLEQGDYdeAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQ------DPDYLPALPRLAELYEKL 225

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 489003398  548 GDDAGAWDHYYKAsWSGNCRDAAWWSLARLAMKRGDVADALEKVNTSLR 596
Cdd:COG2956   226 GDPEEALELLRKA-LELDPSDDLLLALADLLERKEGLEAALALLERQLR 273
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 735-828 9.97e-08

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 52.12  E-value: 9.97e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489003398  735 QMLQSLGDSAFARYLLGCFWYSKRRYDEAVSCWRETLEKSPDYAPAHRLLGVYsWNKQQDATQALAYLQRAVALEPENAR 814
Cdd:COG4783    29 KALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLA-LLKAGDYDEALALLEKALKLDPEHPE 107

                          90
                  ....*....|....
gi 489003398  815 FLFELDFLQKLLAR 828
Cdd:COG4783   108 AYLRLARAYRALGR 121
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 517-647 1.25e-07

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 51.55  E-value: 1.25e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489003398  517 ARAALQRahRLNKNPRDGEASMLLASVLERMGDDAGAWDHYYKAsWSGNCRDAAWWS-LARLAMKRGDVADALEKVNTSL 595
Cdd:COG4235     2 AIARLRQ--ALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKA-LRLDPDNADALLdLAEALLAAGDTEEAEELLERAL 78

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|..
gi 489003398  596 RFNASNPLAMGLKTLALANSGQKKAALEFIFASLEQYPLSYPLHCARWMIER 647
Cdd:COG4235    79 ALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARLLEASIAE 130
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
447-656 1.52e-07

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 53.86  E-value: 1.52e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489003398  447 AIAPALPEAIHN-GDELYFIGQHLEqynhasryAGDYYRRAVELDPQDYRNNVALGTLAFNSADWALAEQCARAALQRah 525
Cdd:COG0457    36 ELDPDDAEALYNlGLAYLRLGRYEE--------ALADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDKALEL-- 105

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489003398  526 rlnkNPRDGEASMLLASVLERMGDDAGAWDHYYKASWSGNCRDAAWWSLARLAMKRGDVADALEKVNTSLRFNASNPLAM 605
Cdd:COG0457   106 ----DPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAA 181

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|.
gi 489003398  606 GLKTLALANSGQKKAALEFIFASLEQYPLSYPLHCARWMIERSDDARETLL 656
Cdd:COG0457   182 ALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLA 232
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 481-635 2.20e-07

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 51.50  E-value: 2.20e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489003398  481 DYYRRAVELDPQDYRNNVALGTLAFNSADWALAEQCARAALQRAHRLNKNPRDGEASMLLASVLERMGDDAGAWDHYYKA 560
Cdd:COG5010     1 ARALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQA 80

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 489003398  561 SWSGNCRDAAWWSLARLAMKRGDVADALEKVNTSLRFNASNPLAMGLKTLALANSGQKKAALEFIFASLEQYPLS 635
Cdd:COG5010    81 LQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSPLK 155
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 458-557 3.12e-07

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 50.39  E-value: 3.12e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489003398  458 NGDELYFIGQHLEQYNHASRyAGDYYRRAVELDPQDYRNNVALGTLAFNSADWALAEQCARAALQRahrlnkNPRDGEAS 537
Cdd:COG4235    16 DAEGWLLLGRAYLRLGRYDE-ALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL------DPDNPEAL 88

                          90       100
                  ....*....|....*....|
gi 489003398  538 MLLASVLERMGDDAGAWDHY 557
Cdd:COG4235    89 YLLGLAAFQQGDYAEAIAAW 108
HemYx COG3071
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ...
 501-811 5.66e-07

Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];


Pssm-ID: 442305 [Multi-domain]  Cd Length: 323  Bit Score: 52.61  E-value: 5.66e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489003398  501 GTLAFNSADWALAEQcaraALQRAHRLNKNPrdGEASMLLASVLERMGDDAGAwDHYYK--ASWSGNCRDAAWWSLARLA 578
Cdd:COG3071    23 GLLALAEGRYARAEK----LLSKAAEHSEAP--LLAYLLAARAAQALGDYERR-DEYLAqaLELAPEAELAVLLTRAELL 95

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489003398  579 MKRGDVADALEKVNTSLRFNASNPLAMGLKTLALANSGQKKAALE--------FIFASLEQYPLSYPLHCA--RWMIERS 648
Cdd:COG3071    96 LDQGQAEQALATLEALRAGAPRHPQVLRLLLQAYRQLGDWEELLEllpalrkhKALSAEEAQALERRAYLGllRQAARDA 175

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489003398  649 DDARETLLRITGRRGVNASLL---AGWLLSIGQ-TSAVKEVLAVLDSQ--EALPMLWRASLSDDANERqqfIAAAEhcha 722
Cdd:COG3071   176 EALKALWKALPRAERRDPELAaayARALIALGDhDEAERLLREALKRQwdPRLVRLYGRLQGGDPAKQ---LKRAE---- 248

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489003398  723 hnvrfpnsldevQMLQSLGDSAFARYLLGCFWYSKRRYDEAVSCWRETLEKSPDyAPAHRLLG-VYswNKQQDATQALAY 801
Cdd:COG3071   249 ------------KWLKKHPNDPDLLLALGRLCLRNQLWGKAREYLEAALALRPS-AEAYAELArLL--EQLGDPEEAAEH 313

                         330
                  ....*....|
gi 489003398  802 LQRAVALEPE 811
Cdd:COG3071   314 YRKALALALG 323
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
742-814 9.42e-07

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 47.86  E-value: 9.42e-07
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 489003398  742 DSAFARYLLGCFWYSKRRYDEAVScWRETLEKSPDYAPAHRLLGVYSWnKQQDATQALAYLQRAVALEPENAR 814
Cdd:COG3063    24 DNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLL-ELGDYDEALAYLERALELDPSALR 94
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
479-560 1.05e-06

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 47.86  E-value: 1.05e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489003398  479 AGDYYRRAVELDPQDYRNNVALGTLAFNSADWALAEQcaraaLQRAHRLnkNPRDGEASMLLASVLERMGDDAGAWDHYY 558
Cdd:COG3063    11 AEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-----LEKALKL--DPNNAEALLNLAELLLELGDYDEALAYLE 83


                  ..
gi 489003398  559 KA 560
Cdd:COG3063    84 RA 85
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 463-773 1.87e-06

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 50.88  E-value: 1.87e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489003398  463 YFIGQHLEQYNHASRyAGDYYRRAVELDPQDYRNNVALGTLAFNSADWALAEqcarAALQRAhrLNKNPRDGEASMLLAS 542
Cdd:COG2956    12 YFKGLNYLLNGQPDK-AIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAI----RIHQKL--LERDPDRAEALLELAQ 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489003398  543 VLERMGDDAGAWDHYYKASWSGNCRDAAWWSLARLAMKRGDVADALEKVNTSLRFNASNPLAMGLKTLALANSGQKKAAL 622
Cdd:COG2956    85 DYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAI 164

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489003398  623 EFIFASLEQYPlsyplhcarwmiersDDARETLLritgrrgvnaslLAGWLLSIGQTSAVKEVLavldsQEALpmlwras 702
Cdd:COG2956   165 EALEKALKLDP---------------DCARALLL------------LAELYLEQGDYEEAIAAL-----ERAL------- 205

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 489003398  703 lsDDANERQQFIAAAEHCHAHNVRFPNSLDEVQMLQSLGDSAFARYLLGCFWYSKRRYDEAVSCWRETLEK 773
Cdd:COG2956   206 --EQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLLLALADLLERKEGLEAALALLERQLRR 274
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 735-819 2.15e-06

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 48.08  E-value: 2.15e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489003398  735 QMLQSLGDSAFARYLLGCFWYSKRRYDEAVSCWRETLEKSPDYAPAHRLLGVYSWnKQQDATQALAYLQRAVALEPENAR 814
Cdd:COG4235     8 QALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALL-AAGDTEEAEELLERALALDPDNPE 86


                  ....*
gi 489003398  815 FLFEL 819
Cdd:COG4235    87 ALYLL 91
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 483-608 3.51e-06

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 47.31  E-value: 3.51e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489003398  483 YRRAVELDPQDYRNNVALGTLAFNSADWALAEQcaraALQRAHRLnkNPRDGEASMLLASVLERMGDDAGAWDHYYKA-- 560
Cdd:COG4235     6 LRQALAANPNDAEGWLLLGRAYLRLGRYDEALA----AYEKALRL--DPDNADALLDLAEALLAAGDTEEAEELLERAla 79

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 489003398  561 SWSGNcrDAAWWSLARLAMKRGDVADALEKVNTSLRFNASNPLAMGLK 608
Cdd:COG4235    80 LDPDN--PEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARLLE 125
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 744-819 3.57e-06

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 47.49  E-value: 3.57e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 489003398  744 AFARYLLGCFWYSKRRYDEAVSCWRETLEKSPDYAPAHRLLGvYSWNKQQDATQALAYLQRAVALEPENARFLFEL 819
Cdd:COG4783     4 AEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLG-EILLQLGDLDEAIVLLHEALELDPDEPEARLNL 78
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 499-633 4.33e-06

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 47.49  E-value: 4.33e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489003398  499 ALGTLAFNSADWALAEQCARAALQrahrlnKNPRDGEASMLLASVLERMGDDAGAWDHYYKASWSGNCRDAAWWSLARLA 578
Cdd:COG4783     9 ALAQALLLAGDYDEAEALLEKALE------LDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLAL 82

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 489003398  579 MKRGDVADALEKVNTSLRFNASNPLAMGLKTLALANSGQKKAALEFIFASLEQYP 633
Cdd:COG4783    83 LKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDP 137
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 460-601 5.00e-06

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 47.11  E-value: 5.00e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489003398  460 DELYFIGQHLEQYNHASRyAGDYYRRAVELDPQDYRNNVALGTLAFNSADWALAEQCARAALQRahrlnkNPRDGEASML 539
Cdd:COG4783     5 EALYALAQALLLAGDYDE-AEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALEL------DPDEPEARLN 77

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 489003398  540 LASVLERMGDDAGAWDHYYKASwSGNCRDA-AWWSLARLAMKRGDVADALEKVNTSLRFNASN 601
Cdd:COG4783    78 LGLALLKAGDYDEALALLEKAL-KLDPEHPeAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 692-828 5.54e-06

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 47.65  E-value: 5.54e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489003398  692 QEALPMLWRASLSDDANERQQFIAAAEHCHAHNVRFPNSLDEVQMLQSLGDSAFARYLLgcfWYSKRRYDEAVSCWRETL 771
Cdd:COG5010     5 EGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNL---YNKLGDFEESLALLEQAL 81

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 489003398  772 EKSPDYAPAHRLLGvYSWNKQQDATQALAYLQRAVALEPENARFLFELDFLQKLLAR 828
Cdd:COG5010    82 QLDPNNPELYYNLA-LLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQ 137
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 742-812 5.77e-06

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 47.11  E-value: 5.77e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 489003398  742 DSAFARYLLGCFWYSKRRYDEAVSCWRETLEKSPDYAPAHRLLGvYSWNKQQDATQALAYLQRAVALEPEN 812
Cdd:COG4783    70 DEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLA-RAYRALGRPDEAIAALEKALELDPDD 139
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 899-1007 5.98e-06

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 46.14  E-value: 5.98e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489003398  899 LQFIERGAFKQATDCLKAAL-RYPDnlgegrllGQTDNDIWYLLGYCAEQAGDAQQAAEYYQlarqggstldagRYYNDQ 977
Cdd:COG1729     1 KALLKAGDYDEAIAAFKAFLkRYPN--------SPLAPDALYWLGEAYYALGDYDEAAEAFE------------KLLKRY 60

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 489003398  978 P-----ADYLFWQGIALRKSGNPAQAEQYFRHFID 1007
Cdd:COG1729    61 PdspkaPDALLKLGLSYLELGDYDKARATLEELIK 95
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
738-819 6.25e-06

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 48.76  E-value: 6.25e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489003398  738 QSLGDSAFARYLLGCFWYSKRRYDEAVSCWRETLEKSPDYAPAHRLLGVYsWNKQQDATQALAYLQRAVALEPENARFLF 817
Cdd:COG4785    67 LALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLA-YLLLGDYDAALEDFDRALELDPDYAYAYL 145


                  ..
gi 489003398  818 EL 819
Cdd:COG4785   146 NR 147
COG3899 COG3899
Predicted ATPase [General function prediction only];
473-963 7.76e-06

Predicted ATPase [General function prediction only];


Pssm-ID: 443106 [Multi-domain]  Cd Length: 1244  Bit Score: 50.24  E-value: 7.76e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489003398  473 NHASRyAGDYyRRAVELdpqdyrnNVALGTLAFNSADWALAEQCARAALQRAHRLNKNPRDGEASMLLASVLERMGDDAG 552
Cdd:COG3899   693 HHLNR-AGER-DRAARL-------LLRAARRALARGAYAEALRYLERALELLPPDPEEEYRLALLLELAEALYLAGRFEE 763

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489003398  553 AWDHY-----------YKASWSGNCRDAAWWSLARLAMKRGDVADALEKVNTSL----RFNASNPLAMGLKTLALAN--S 615
Cdd:COG3899   764 AEALLeralaaralaaLAALRHGNPPASARAYANLGLLLLGDYEEAYEFGELALalaeRLGDRRLEARALFNLGFILhwL 843

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489003398  616 GQKKAALEFIFASLEQYpLSYPLHCARWMIERSDDARETLLRITGRRGVNASLLAGWLLSIGQTSAVKEVLAVLDSQEAL 695
Cdd:COG3899   844 GPLREALELLREALEAG-LETGDAALALLALAAAAAAAAAAAALAAAAAAAARLLAAAAAALAAAAAAAALAAAELARLA 922

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489003398  696 PMLWRAS----LSDDANERQQFIAAAEHCHAHNVRFPNSLDEVQMLQSLGDSAFARYLLGC----FWYSKRRYDEAVSCW 767
Cdd:COG3899   923 AAAAAAAalalAAAAAAAAAAALAAAAAAAALAAALALAAAAAAAAAAALAAAAAAAAAAAaaaaAAALEAAAAALLALL 1002

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489003398  768 RETLEKSPDYAPAHRLLGVYSWNKQQDATQALAYLQRAVALEPENARFLFELDFLQKLLARSVHERLTTLVERKAVVLKR 847
Cdd:COG3899  1003 AAAAAAAAAAAALAAALLAAALAALAAAAAAAALLAAAAALALLAALAAAAAAAAAAAALAAAAALLAAAAAAAAAAAAA 1082

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489003398  848 DDLTAELLSLWNASGHYADAAAILDTRVFHPWEGGEGKITGQYLLNQLHRALQFIERGAFKQATDCLKAALRYPDNLGEG 927
Cdd:COG3899  1083 AAAAALAAALAAAALAAAAAAALALAAALAALALAAALAALALAAAARAAAALLLLAAALALALAALLLLAALLLALALL 1162

                         490       500       510
                  ....*....|....*....|....*....|....*.
gi 489003398  928 RLLGQTDNDIWYLLGYCAEQAGDAQQAAEYYQLARQ 963
Cdd:COG3899  1163 LLALAALALAAALAALAAALLAAAAAAAAAAALLAA 1198
HemYx COG3071
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ...
 707-961 2.02e-05

Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];


Pssm-ID: 442305 [Multi-domain]  Cd Length: 323  Bit Score: 47.98  E-value: 2.02e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489003398  707 ANERQQFIAAAEHCHAHNVRFPNSLDEVQMLQslgdsafARYLLgcfwySKRRYDEAvscwRETLEKSPDYAPAHR---- 782
Cdd:COG3071    60 AQALGDYERRDEYLAQALELAPEAELAVLLTR-------AELLL-----DQGQAEQA----LATLEALRAGAPRHPqvlr 123

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489003398  783 -LLGVYSwnKQQDATQALAY---LQRAVALEPENARfLFELDFLQKLLARSVH--ERLTTLVERKAVVLKRD-DLTAELL 855
Cdd:COG3071   124 lLLQAYR--QLGDWEELLELlpaLRKHKALSAEEAQ-ALERRAYLGLLRQAARdaEALKALWKALPRAERRDpELAAAYA 200

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489003398  856 SLWNASGHYADAAAILDTRVFHPWEGGEGKITGQYLLNQLHRALQFIE----------------------RGAFKQATDC 913
Cdd:COG3071   201 RALIALGDHDEAERLLREALKRQWDPRLVRLYGRLQGGDPAKQLKRAEkwlkkhpndpdlllalgrlclrNQLWGKAREY 280

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*...
gi 489003398  914 LKAALRYpdnlgegrllgQTDNDIWYLLGYCAEQAGDAQQAAEYYQLA 961
Cdd:COG3071   281 LEAALAL-----------RPSAEAYAELARLLEQLGDPEEAAEHYRKA 317
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 762-872 3.01e-05

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 44.61  E-value: 3.01e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489003398  762 EAVSCWRETLEKSPDYAPAHRLLGVySWNKQQDATQALAYLQRAVALEPENARFLFELDFLQKLLARSvhERLTTLVERk 841
Cdd:COG4235     1 EAIARLRQALAANPNDAEGWLLLGR-AYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDT--EEAEELLER- 76

                          90       100       110
                  ....*....|....*....|....*....|...
gi 489003398  842 AVVLKRDDLTAELL--SLWNASGHYADAAAILD 872
Cdd:COG4235    77 ALALDPDNPEALYLlgLAAFQQGDYAEAIAAWQ 109
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
754-819 3.45e-05

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 43.62  E-value: 3.45e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 489003398  754 WYSKRRYDEAVSCWRETLEKSPDYAPAHRLLGvYSWNKQQDATQALAYlQRAVALEPENARFLFEL 819
Cdd:COG3063     2 YLKLGDLEEAEEYYEKALELDPDNADALNNLG-LLLLEQGRYDEAIAL-EKALKLDPNNAEALLNL 65
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 425-560 5.76e-05

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 44.57  E-value: 5.76e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489003398  425 AENQPLLDYQEHITQQTPLPEPAIAPALPEAIHNGDELYFIGQHLEQYNHASRY--AGDYYRRAVELDPQDYRNNVALGT 502
Cdd:COG5010    17 LTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFeeSLALLEQALQLDPNNPELYYNLAL 96

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 489003398  503 LAFNSADWALAEQCARAALQRahrlnkNPRDGEASMLLASVLERMGDDAGAWDHYYKA 560
Cdd:COG5010    97 LYSRSGDKDEAKEYYEKALAL------SPDNPNAYSNLAALLLSLGQDDEAKAALQRA 148
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
742-874 1.52e-04

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 44.61  E-value: 1.52e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489003398  742 DSAFARYLLGCFWYSKRRYDEAVSCWRETLEKSPDYAPAHRLLGVySWNKQQDATQALAYLQRAVALEPENARFLFELDF 821
Cdd:COG0457   108 DDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGI-ALEKLGRYEEALELLEKLEAAALAALLAAALGEA 186

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 489003398  822 LQKLLARSVHERLTTLVERKAVVLKRDDLTAELLSLWNASGHYADAAAILDTR 874
Cdd:COG0457   187 ALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAALA 239
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 897-1012 2.50e-04

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 42.49  E-value: 2.50e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489003398  897 RALQFIERGAFKQATDCLKAALR-YPDNLgegrllgqtdnDIWYLLGYCAEQAGDAQQAAEYYQLARQggstldagryYN 975
Cdd:COG4783    10 LAQALLLAGDYDEAEALLEKALElDPDNP-----------EAFALLGEILLQLGDLDEAIVLLHEALE----------LD 68

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 489003398  976 DQPADYLFWQGIALRKSGNPAQAEQYFRHFIDWAAQH 1012
Cdd:COG4783    69 PDEPEARLNLGLALLKAGDYDEALALLEKALKLDPEH 105
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 735-828 3.92e-04

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 41.53  E-value: 3.92e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489003398  735 QMLQSLGDSAFARYLLGCFWYSKRRYDEAVSCWRETLEKSPDYAPAHRLLGVYSWnKQQDATQALAYLQRAVALEPENAr 814
Cdd:COG4235    42 KALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAF-QQGDYAEAIAAWQKLLALLPADA- 119

                          90
                  ....*....|....
gi 489003398  815 flfELDFLQKLLAR 828
Cdd:COG4235   120 ---PARLLEASIAE 130
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 909-1086 4.99e-04

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 41.14  E-value: 4.99e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489003398  909 QATDCLKAALR-YPDNLgegrllgqtdnDIWYLLGYCAEQAGDAQQAAEYYQLARQggstldagryYNDQPADYLFWQGI 987
Cdd:COG4235     1 EAIARLRQALAaNPNDA-----------EGWLLLGRAYLRLGRYDEALAAYEKALR----------LDPDNADALLDLAE 59

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489003398  988 ALRKSGNPAQAEQYFRHfidwaaqhrddvpqvdffAVSL-PDlvvlDVSAqqrhqqhcLFIEALGHLGLGNVSACQQRMQ 1066
Cdd:COG4235    60 ALLAAGDTEEAEELLER------------------ALALdPD----NPEA--------LYLLGLAAFQQGDYAEAIAAWQ 109

                         170       180
                  ....*....|....*....|
gi 489003398 1067 QLLQINPAHDKAHLIRHALQ 1086
Cdd:COG4235   110 KLLALLPADAPARLLEASIA 129
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
503-600 6.02e-04

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 40.15  E-value: 6.02e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489003398  503 LAFNSADWALAEQCARAALQRahrlnkNPRDGEASMLLASVLERMGDDAGAWDhyYKASWSGNCRDA-AWWSLARLAMKR 581
Cdd:COG3063     1 LYLKLGDLEEAEEYYEKALEL------DPDNADALNNLGLLLLEQGRYDEAIA--LEKALKLDPNNAeALLNLAELLLEL 72

                          90
                  ....*....|....*....
gi 489003398  582 GDVADALEKVNTSLRFNAS 600
Cdd:COG3063    73 GDYDEALAYLERALELDPS 91
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 735-810 6.35e-04

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 41.48  E-value: 6.35e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 489003398  735 QMLQSLGDSAFARYLLGCFWYSKRRYDEAVSCWRETLEKSPDYAPAHRLLGVYSWnKQQDATQALAYLQRAVALEP 810
Cdd:COG5010    79 QALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLL-SLGQDDEAKAALQRALGTSP 153
HemYx COG3071
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ...
 485-560 9.69e-04

Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];


Pssm-ID: 442305 [Multi-domain]  Cd Length: 323  Bit Score: 42.59  E-value: 9.69e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 489003398  485 RAVELDPQDYRNNVALGTLAFNSADWALAEQCARAALQRAhrlnknpRDGEASMLLASVLERMGDDAGAWDHYYKA 560
Cdd:COG3071   249 KWLKKHPNDPDLLLALGRLCLRNQLWGKAREYLEAALALR-------PSAEAYAELARLLEQLGDPEEAAEHYRKA 317
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 735-811 1.17e-03

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 39.59  E-value: 1.17e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489003398  735 QMLQSLGDSAF---ARYLLGCFWYSKRRYDEAVSCWRETLEKSPD--YAP-AHRLLGvYSWNKQQDATQALAYLQRAVAL 808
Cdd:COG1729    18 AFLKRYPNSPLapdALYWLGEAYYALGDYDEAAEAFEKLLKRYPDspKAPdALLKLG-LSYLELGDYDKARATLEELIKK 96


                  ...
gi 489003398  809 EPE 811
Cdd:COG1729    97 YPD 99
COG4700 COG4700
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
470-593 3.62e-03

Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];


Pssm-ID: 443735 [Multi-domain]  Cd Length: 249  Bit Score: 40.25  E-value: 3.62e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489003398  470 EQYNHASRY--AGDYYRRAVELDpqdYRNNVA----LGTLAFNSADWALAeqcaRAALQRAHRLNKNPRDGEASMLLASV 543
Cdd:COG4700    97 DALLELGRYdeAIELYEEALTGI---FADDPHillgLAQALFELGRYAEA----LETLEKLIAKNPDFKSSDAHLLYARA 169

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|..
gi 489003398  544 LERMGDDAGAWDHYYKAS--WSGNcrdAAWWSLARLAMKRGDVADALEKVNT 593
Cdd:COG4700   170 LEALGDLEAAEAELEALArrYSGP---EARYRYAKFLARQGRTAEAKELLEE 218
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 514-657 3.92e-03

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 39.02  E-value: 3.92e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489003398  514 EQCARAALQRAHRLNKNPRDGEASMLLASVLERMGDDAgawdhyykaswsgncrdAAWWSLARLAMKRGDVADALEKVNT 593
Cdd:COG4783     1 AACAEALYALAQALLLAGDYDEAEALLEKALELDPDNP-----------------EAFALLGEILLQLGDLDEAIVLLHE 63

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 489003398  594 SLRFNASNPLAMGLKTLALANSGQKKAALEFIFASLEQYPLSYPLHC----ARWMIERSDDARETLLR 657
Cdd:COG4783    64 ALELDPDEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLrlarAYRALGRPDEAIAALEK 131
PRK11447 PRK11447
cellulose synthase subunit BcsC; Provisional
 897-1078 6.45e-03

cellulose synthase subunit BcsC; Provisional


Pssm-ID: 183140 [Multi-domain]  Cd Length: 1157  Bit Score: 40.84  E-value: 6.45e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489003398  897 RALQFIERGAFKQATDCLKAALR-YPDnlgegrllgqtDNDIWYLLGYCAEQAGDAQQAAEYYQLARQggstLDAGRYYN 975
Cdd:PRK11447  275 QGLAAVDSGQGGKAIPELQQAVRaNPK-----------DSEALGALGQAYSQQGDRARAVAQFEKALA----LDPHSSNR 339

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489003398  976 DQPADYL----FW----QGIALRKSGNPAQAEQYFRHfidwAAQHRDDvpqvDFFAVslpdLVVLDVSAQQrhqqhclfi 1047
Cdd:PRK11447  340 DKWESLLkvnrYWlliqQGDAALKANNLAQAERLYQQ----ARQVDNT----DSYAV----LGLGDVAMAR--------- 398

                         170       180       190
                  ....*....|....*....|....*....|.
gi 489003398 1048 ealghlglGNVSACQQRMQQLLQINPAHDKA 1078
Cdd:PRK11447  399 --------KDYAAAERYYQQALRMDPGNTNA 421
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 610-842 9.64e-03

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 39.98  E-value: 9.64e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489003398  610 LALANSGQKKAALEFIFASLEQYPLSYPLHCARWMIERSDDA---RETLLRITGRRGVNASLLAGWLLSIGQT-SAVKEV 685
Cdd:COG3914    56 AAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEAlalYRRALALNPDNAEALFNLGNLLLALGRLeEALAAL 135

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489003398  686 LAVLDSQEALPMLWrASLSDDANERQQFIAAAEHCHahnvrfpnsldevQMLQSLGDSAFARYLLGCFWYSKRRYDEAVS 765
Cdd:COG3914   136 RRALALNPDFAEAY-LNLGEALRRLGRLEEAIAALR-------------RALELDPDNAEALNNLGNALQDLGRLEEAIA 201

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489003398  766 CWRETLEKSPDYAPAHRLL-----GVYSWNKQQDATQALAYLQRAVALEPENARFLFELDFLQKLLArsVHERLTTLVER 840
Cdd:COG3914   202 AYRRALELDPDNADAHSNLlfalrQACDWEVYDRFEELLAALARGPSELSPFALLYLPDDDPAELLA--LARAWAQLVAA 279


                  ..
gi 489003398  841 KA 842
Cdd:COG3914   280 AA 281
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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