|
Name |
Accession |
Description |
Interval |
E-value |
| PRK05022 |
PRK05022 |
nitric oxide reductase transcriptional regulator NorR; |
3-507 |
0e+00 |
|
nitric oxide reductase transcriptional regulator NorR;
Pssm-ID: 235331 [Multi-domain] Cd Length: 509 Bit Score: 899.54 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489004203 3 FSVDELARIAIDLQSDIGHTDRFSRLITTLRQILGCDASALLRYEAHQFVPLAIDGLAQDVLGRRFALEGHPRLEAIARA 82
Cdd:PRK05022 1 FSLDALLPIALDLSRGLPHQDRFQRLLTTLRQVLPCDASALLRLDGDQLVPLAIDGLSPDVLGRRFALEEHPRLEAILRA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489004203 83 GDVVRFPADSDLPDPYDGLIPGH-ESLKVHACVGLPLFAGQTLIGALTLDGMDADRFDSFSDEELRLIAALVAGALNNAL 161
Cdd:PRK05022 81 GDPVRFPADSELPDPYDGLIPGVqESLPVHDCMGLPLFVDGRLIGALTLDALDPGQFDAFSDEELRALAALAAATLRNAL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489004203 162 LIARLEAQNVLP---AQAVNYPLPERQEIIGLSGPMLQLKKEIDIVAASDLNVLISGETGTGKELVAKAVHQGSPRAANP 238
Cdd:PRK05022 161 LIEQLESQAELPqdvAEFLRQEALKEGEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAASPRADKP 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489004203 239 LVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRSLR 318
Cdd:PRK05022 241 LVYLNCAALPESLAESELFGHVKGAFTGAISNRSGKFELADGGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLR 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489004203 319 VDVRVLAATNRDLRQEVVEGRFRADLYHRLSVFPLSVPPLRERESDVVLLAGYFCEQCRLRMGLARVILAEAARNRLQKW 398
Cdd:PRK05022 321 VDVRVIAATNRDLREEVRAGRFRADLYHRLSVFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLRLSPAAQAALLAY 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489004203 399 SWPGNVRELEHAIHRAVVLARATQAGDEVVLEPQHFQFAVAAPMLPTETAAAAPATGNINLREATDSFQREAISRALEAN 478
Cdd:PRK05022 401 DWPGNVRELEHVISRAALLARARGAGRIVTLEAQHLDLPAEVALPPPEAAAAPAAVVSQNLREATEAFQRQLIRQALAQH 480
|
490 500
....*....|....*....|....*....
gi 489004203 479 QGNWAATARALELDVANLHRLAKRLGLKG 507
Cdd:PRK05022 481 QGNWAAAARALELDRANLHRLAKRLGLKD 509
|
|
| RocR |
COG3829 |
RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis ... |
185-506 |
1.47e-147 |
|
RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis domains [Transcription, Signal transduction mechanisms];
Pssm-ID: 443041 [Multi-domain] Cd Length: 448 Bit Score: 430.35 E-value: 1.47e-147
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489004203 185 QEIIGLSGPMLQLKKEIDIVAASDLNVLISGETGTGKELVAKAVHQGSPRAANPLVYLNCAALPESVAESELFGHVKGAF 264
Cdd:COG3829 138 DDIIGKSPAMKELLELAKRVAKSDSTVLILGESGTGKELFARAIHNASPRRDGPFVAVNCAAIPENLLESELFGYEKGAF 217
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489004203 265 TGAISN-RSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRSLRVDVRVLAATNRDLRQEVVEGRFRAD 343
Cdd:COG3829 218 TGAKKGgKPGLFELADGGTLFLDEIGEMPLSLQAKLLRVLQEKEVRRVGGTKPIPVDVRIIAATNRDLEEMVEEGRFRED 297
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489004203 344 LYHRLSVFPLSVPPLRERESDVVLLAGYFCEQCRLRMGLARVILAEAARNRLQKWSWPGNVRELEHAIHRAVVLAratqa 423
Cdd:COG3829 298 LYYRLNVIPIHIPPLRERKEDIPLLAEHFLEKFNKKYGKNIKGISPEALELLLAYDWPGNVRELENVIERAVVLS----- 372
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489004203 424 gDEVVLEPQHFqfavaaPMLPTETAAAAPATGNINLREATDSFQREAISRALEANQGNWAATARALELDVANLHRLAKRL 503
Cdd:COG3829 373 -EGDVITPEHL------PEYLLEEAEAASAAEEGSLKEALEEVEKELIEEALEKTGGNKSKAAKALGISRSTLYRKLKKY 445
|
...
gi 489004203 504 GLK 506
Cdd:COG3829 446 GIK 448
|
|
| nifA |
TIGR01817 |
Nif-specific regulatory protein; This model represents NifA, a DNA-binding regulatory protein ... |
114-421 |
8.14e-105 |
|
Nif-specific regulatory protein; This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms. [Central intermediary metabolism, Nitrogen fixation, Regulatory functions, DNA interactions]
Pssm-ID: 273817 [Multi-domain] Cd Length: 534 Bit Score: 323.98 E-value: 8.14e-105
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489004203 114 VGLPLFAGQTLIGALTLDGMDadRFDSFSDEELRL---IAALVAGALNNALLIA----RLEAQNVLPAQAVNYPLPERQE 186
Cdd:TIGR01817 112 IGVPIKADSETIGVLAADRDF--RSRERLEEEVRFlemVANLIGQTVRLHRLVAqrreRLIAEAVQLSKQLRDKAPEIAR 189
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489004203 187 --------IIGLSGPMLQLKKEIDIVAASDLNVLISGETGTGKELVAKAVHQGSPRAANPLVYLNCAALPESVAESELFG 258
Cdd:TIGR01817 190 rrsgkedgIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSETLLESELFG 269
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489004203 259 HVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRSLRVDVRVLAATNRDLRQEVVEG 338
Cdd:TIGR01817 270 HEKGAFTGAIAQRKGRFELADGGTLFLDEIGEISPAFQAKLLRVLQEGEFERVGGNRTLKVDVRLVAATNRDLEEAVAKG 349
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489004203 339 RFRADLYHRLSVFPLSVPPLRERESDVVLLAGYFCEQCRLRMGLARVILAEAARnRLQKWSWPGNVRELEHAIHRAVVLA 418
Cdd:TIGR01817 350 EFRADLYYRINVVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPLTITPSAIR-VLMSCKWPGNVRELENCLERTATLS 428
|
...
gi 489004203 419 RAT 421
Cdd:TIGR01817 429 RSG 431
|
|
| Sigma54_activat |
pfam00158 |
Sigma-54 interaction domain; |
187-353 |
1.52e-101 |
|
Sigma-54 interaction domain;
Pssm-ID: 425491 [Multi-domain] Cd Length: 168 Bit Score: 302.40 E-value: 1.52e-101
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489004203 187 IIGLSGPMLQLKKEIDIVAASDLNVLISGETGTGKELVAKAVHQGSPRAANPLVYLNCAALPESVAESELFGHVKGAFTG 266
Cdd:pfam00158 1 IIGESPAMQEVLEQAKRVAPTDAPVLITGESGTGKELFARAIHQLSPRADGPFVAVNCAAIPEELLESELFGHEKGAFTG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489004203 267 AISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRSLRVDVRVLAATNRDLRQEVVEGRFRADLYH 346
Cdd:pfam00158 81 ADSDRKGLFELADGGTLFLDEIGELPLELQAKLLRVLQEGEFERVGGTKPIKVDVRIIAATNRDLEEAVAEGRFREDLYY 160
|
....*..
gi 489004203 347 RLSVFPL 353
Cdd:pfam00158 161 RLNVIPI 167
|
|
| RNA_repair_RtcR |
NF038308 |
RNA repair transcriptional activator RtcR; |
187-506 |
2.06e-90 |
|
RNA repair transcriptional activator RtcR;
Pssm-ID: 468466 [Multi-domain] Cd Length: 527 Bit Score: 286.38 E-value: 2.06e-90
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489004203 187 IIGLSGPMLQLKKEIDIVA-ASDLNVLISGETGTGKELVAKAVHQGSPRA---ANPLVYLNCAALPESVAESELFGHVKG 262
Cdd:NF038308 181 IATRNAAFNRLIEQIERVAlRSRAPILLTGPTGAGKSFLARRIYELKKRRhqvSGPFVEVNCATLRGDLAMSELFGHVKG 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489004203 263 AFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRSLRVDVRVLAATNRDLRQEVVEGRFRA 342
Cdd:NF038308 261 AFTGAQADRAGLLRAADGGTLFLDEIGELGLDEQAMLLRAIEEKRFLPVGSDKEVSSDFQLIAGTNRDLRQEVAEGRFRE 340
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489004203 343 DLYHRLSVFPLSVPPLRERESDVVLLAGYFCEQCRLRMGLARVILAEA-----ARNRLQKWSWPGNVRELEHAIHRAVVL 417
Cdd:NF038308 341 DLYARINLWTFRLPGLRERREDIEPNLDYELDRFARELGRQVRFNKEArfrylAFATSPEALWPGNFRELSASVTRMATL 420
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489004203 418 ARATQAGDEVV------LEPQHFQFAVAAPMLPTETAAAAPATGNINLReatDSFQREAISRALEANQGNWAATARAL-- 489
Cdd:NF038308 421 ADGGRITEELVeeeiarLRAAWQSAPAAADDDALADLLGGEQLAELDLF---DRVQLAAVLRVCRQSRSLSAAGRRLFgv 497
|
330 340
....*....|....*....|....
gi 489004203 490 ---ELDVAN-LHRLAK---RLGLK 506
Cdd:NF038308 498 srqQKASPNdADRLRKylaRFGLS 521
|
|
| AAA |
cd00009 |
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ... |
206-349 |
1.32e-23 |
|
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Pssm-ID: 99707 [Multi-domain] Cd Length: 151 Bit Score: 96.83 E-value: 1.32e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489004203 206 ASDLNVLISGETGTGKELVAKAVHQGSPRAANPLVYLNCAALPESVAESELFGHVkgaftgAISNRSGKFEMADNGTLFL 285
Cdd:cd00009 17 PPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHF------LVRLLFELAEKAKPGVLFI 90
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 489004203 286 DEIGELSLALQAKLLRVLQYGDiqrvgDDRSLRVDVRVLAATNRDLrqevvEGRFRADLYHRLS 349
Cdd:cd00009 91 DEIDSLSRGAQNALLRVLETLN-----DLRIDRENVRVIGATNRPL-----LGDLDRALYDRLD 144
|
|
| GAF |
smart00065 |
Domain present in phytochromes and cGMP-specific phosphodiesterases; Mutations within these ... |
21-167 |
8.75e-13 |
|
Domain present in phytochromes and cGMP-specific phosphodiesterases; Mutations within these domains in PDE6B result in autosomal recessive inheritance of retinitis pigmentosa.
Pssm-ID: 214500 [Multi-domain] Cd Length: 149 Bit Score: 65.87 E-value: 8.75e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489004203 21 HTDRFSRLITTLRQILGCDASALLRY---EAHQFVPLAIDGLAQDVLGRRFALEgHPRLEAIARAGDVVRFPADSDLPDP 97
Cdd:smart00065 2 LEELLQTILEELRQLLGADRVLIYLVdenDRGELVLVAADGLTLPTLGIRFPLD-EGLAGRVAETGRPLNIPDVEADPLF 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 489004203 98 YDGLIPGHEslKVHACVGLPLFAGQTLIGALTLDGMDADRFdsFSDEELRL---IAALVAGALNNALLIARLE 167
Cdd:smart00065 81 AEDLLGRYQ--GVRSFLAVPLVADGELVGVLALHNKKSPRP--FTEEDEELlqaLANQLAIALANAQLYEELR 149
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PRK05022 |
PRK05022 |
nitric oxide reductase transcriptional regulator NorR; |
3-507 |
0e+00 |
|
nitric oxide reductase transcriptional regulator NorR;
Pssm-ID: 235331 [Multi-domain] Cd Length: 509 Bit Score: 899.54 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489004203 3 FSVDELARIAIDLQSDIGHTDRFSRLITTLRQILGCDASALLRYEAHQFVPLAIDGLAQDVLGRRFALEGHPRLEAIARA 82
Cdd:PRK05022 1 FSLDALLPIALDLSRGLPHQDRFQRLLTTLRQVLPCDASALLRLDGDQLVPLAIDGLSPDVLGRRFALEEHPRLEAILRA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489004203 83 GDVVRFPADSDLPDPYDGLIPGH-ESLKVHACVGLPLFAGQTLIGALTLDGMDADRFDSFSDEELRLIAALVAGALNNAL 161
Cdd:PRK05022 81 GDPVRFPADSELPDPYDGLIPGVqESLPVHDCMGLPLFVDGRLIGALTLDALDPGQFDAFSDEELRALAALAAATLRNAL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489004203 162 LIARLEAQNVLP---AQAVNYPLPERQEIIGLSGPMLQLKKEIDIVAASDLNVLISGETGTGKELVAKAVHQGSPRAANP 238
Cdd:PRK05022 161 LIEQLESQAELPqdvAEFLRQEALKEGEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAASPRADKP 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489004203 239 LVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRSLR 318
Cdd:PRK05022 241 LVYLNCAALPESLAESELFGHVKGAFTGAISNRSGKFELADGGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLR 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489004203 319 VDVRVLAATNRDLRQEVVEGRFRADLYHRLSVFPLSVPPLRERESDVVLLAGYFCEQCRLRMGLARVILAEAARNRLQKW 398
Cdd:PRK05022 321 VDVRVIAATNRDLREEVRAGRFRADLYHRLSVFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLRLSPAAQAALLAY 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489004203 399 SWPGNVRELEHAIHRAVVLARATQAGDEVVLEPQHFQFAVAAPMLPTETAAAAPATGNINLREATDSFQREAISRALEAN 478
Cdd:PRK05022 401 DWPGNVRELEHVISRAALLARARGAGRIVTLEAQHLDLPAEVALPPPEAAAAPAAVVSQNLREATEAFQRQLIRQALAQH 480
|
490 500
....*....|....*....|....*....
gi 489004203 479 QGNWAATARALELDVANLHRLAKRLGLKG 507
Cdd:PRK05022 481 QGNWAAAARALELDRANLHRLAKRLGLKD 509
|
|
| RocR |
COG3829 |
RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis ... |
185-506 |
1.47e-147 |
|
RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis domains [Transcription, Signal transduction mechanisms];
Pssm-ID: 443041 [Multi-domain] Cd Length: 448 Bit Score: 430.35 E-value: 1.47e-147
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489004203 185 QEIIGLSGPMLQLKKEIDIVAASDLNVLISGETGTGKELVAKAVHQGSPRAANPLVYLNCAALPESVAESELFGHVKGAF 264
Cdd:COG3829 138 DDIIGKSPAMKELLELAKRVAKSDSTVLILGESGTGKELFARAIHNASPRRDGPFVAVNCAAIPENLLESELFGYEKGAF 217
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489004203 265 TGAISN-RSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRSLRVDVRVLAATNRDLRQEVVEGRFRAD 343
Cdd:COG3829 218 TGAKKGgKPGLFELADGGTLFLDEIGEMPLSLQAKLLRVLQEKEVRRVGGTKPIPVDVRIIAATNRDLEEMVEEGRFRED 297
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489004203 344 LYHRLSVFPLSVPPLRERESDVVLLAGYFCEQCRLRMGLARVILAEAARNRLQKWSWPGNVRELEHAIHRAVVLAratqa 423
Cdd:COG3829 298 LYYRLNVIPIHIPPLRERKEDIPLLAEHFLEKFNKKYGKNIKGISPEALELLLAYDWPGNVRELENVIERAVVLS----- 372
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489004203 424 gDEVVLEPQHFqfavaaPMLPTETAAAAPATGNINLREATDSFQREAISRALEANQGNWAATARALELDVANLHRLAKRL 503
Cdd:COG3829 373 -EGDVITPEHL------PEYLLEEAEAASAAEEGSLKEALEEVEKELIEEALEKTGGNKSKAAKALGISRSTLYRKLKKY 445
|
...
gi 489004203 504 GLK 506
Cdd:COG3829 446 GIK 448
|
|
| AtoC |
COG2204 |
DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, ... |
141-504 |
5.89e-125 |
|
DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, and a Fis-type DNA-binding domains [Signal transduction mechanisms];
Pssm-ID: 441806 [Multi-domain] Cd Length: 418 Bit Score: 371.60 E-value: 5.89e-125
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489004203 141 FSDEELRLiaalvagALNNALLIARLEAQNvlpaqavnyplPERQEIIGLSGPMLQLKKEIDIVAASDLNVLISGETGTG 220
Cdd:COG2204 105 FDLEELLA-------AVERALERRRLRREN-----------AEDSGLIGRSPAMQEVRRLIEKVAPSDATVLITGESGTG 166
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489004203 221 KELVAKAVHQGSPRAANPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLL 300
Cdd:COG2204 167 KELVARAIHRLSPRADGPFVAVNCAAIPEELLESELFGHEKGAFTGAVARRIGKFELADGGTLFLDEIGEMPLALQAKLL 246
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489004203 301 RVLQYGDIQRVGDDRSLRVDVRVLAATNRDLRQEVVEGRFRADLYHRLSVFPLSVPPLRERESDVVLLAGYFCEQCRLRM 380
Cdd:COG2204 247 RVLQEREFERVGGNKPIPVDVRVIAATNRDLEELVEEGRFREDLYYRLNVFPIELPPLRERREDIPLLARHFLARFAAEL 326
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489004203 381 GLaRVILAEAARNRLQKWSWPGNVRELEHAIHRAVVLARatqaGDEVVLEpqhfqfavaapmlptetaaaapatgniNLR 460
Cdd:COG2204 327 GK-PVKLSPEALEALLAYDWPGNVRELENVIERAVILAD----GEVITAE---------------------------DLP 374
|
330 340 350 360
....*....|....*....|....*....|....*....|....
gi 489004203 461 EATDSFQREAISRALEANQGNWAATARALELDVANLHRLAKRLG 504
Cdd:COG2204 375 EALEEVERELIERALEETGGNVSRAAELLGISRRTLYRKLKKYG 418
|
|
| nifA |
TIGR01817 |
Nif-specific regulatory protein; This model represents NifA, a DNA-binding regulatory protein ... |
114-421 |
8.14e-105 |
|
Nif-specific regulatory protein; This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms. [Central intermediary metabolism, Nitrogen fixation, Regulatory functions, DNA interactions]
Pssm-ID: 273817 [Multi-domain] Cd Length: 534 Bit Score: 323.98 E-value: 8.14e-105
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489004203 114 VGLPLFAGQTLIGALTLDGMDadRFDSFSDEELRL---IAALVAGALNNALLIA----RLEAQNVLPAQAVNYPLPERQE 186
Cdd:TIGR01817 112 IGVPIKADSETIGVLAADRDF--RSRERLEEEVRFlemVANLIGQTVRLHRLVAqrreRLIAEAVQLSKQLRDKAPEIAR 189
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489004203 187 --------IIGLSGPMLQLKKEIDIVAASDLNVLISGETGTGKELVAKAVHQGSPRAANPLVYLNCAALPESVAESELFG 258
Cdd:TIGR01817 190 rrsgkedgIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSETLLESELFG 269
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489004203 259 HVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRSLRVDVRVLAATNRDLRQEVVEG 338
Cdd:TIGR01817 270 HEKGAFTGAIAQRKGRFELADGGTLFLDEIGEISPAFQAKLLRVLQEGEFERVGGNRTLKVDVRLVAATNRDLEEAVAKG 349
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489004203 339 RFRADLYHRLSVFPLSVPPLRERESDVVLLAGYFCEQCRLRMGLARVILAEAARnRLQKWSWPGNVRELEHAIHRAVVLA 418
Cdd:TIGR01817 350 EFRADLYYRINVVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPLTITPSAIR-VLMSCKWPGNVRELENCLERTATLS 428
|
...
gi 489004203 419 RAT 421
Cdd:TIGR01817 429 RSG 431
|
|
| Sigma54_activat |
pfam00158 |
Sigma-54 interaction domain; |
187-353 |
1.52e-101 |
|
Sigma-54 interaction domain;
Pssm-ID: 425491 [Multi-domain] Cd Length: 168 Bit Score: 302.40 E-value: 1.52e-101
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489004203 187 IIGLSGPMLQLKKEIDIVAASDLNVLISGETGTGKELVAKAVHQGSPRAANPLVYLNCAALPESVAESELFGHVKGAFTG 266
Cdd:pfam00158 1 IIGESPAMQEVLEQAKRVAPTDAPVLITGESGTGKELFARAIHQLSPRADGPFVAVNCAAIPEELLESELFGHEKGAFTG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489004203 267 AISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRSLRVDVRVLAATNRDLRQEVVEGRFRADLYH 346
Cdd:pfam00158 81 ADSDRKGLFELADGGTLFLDEIGELPLELQAKLLRVLQEGEFERVGGTKPIKVDVRIIAATNRDLEEAVAEGRFREDLYY 160
|
....*..
gi 489004203 347 RLSVFPL 353
Cdd:pfam00158 161 RLNVIPI 167
|
|
| AcoR |
COG3284 |
Transcriptional regulator DhaR of acetoin/glycerol metabolism [Transcription]; |
160-504 |
2.64e-100 |
|
Transcriptional regulator DhaR of acetoin/glycerol metabolism [Transcription];
Pssm-ID: 442514 [Multi-domain] Cd Length: 625 Bit Score: 314.92 E-value: 2.64e-100
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489004203 160 ALLIARLEAQNVLPAQAVNYPLPERQEIIGLSGPMLQLKKEIDIVAASDLNVLISGETGTGKELVAKAVHQGSPRAANPL 239
Cdd:COG3284 296 ALLRLRPARRAARAAPAGAPAPAALAALAGGDPAMRRALRRARRLADRDIPVLILGETGTGKELFARAIHAASPRADGPF 375
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489004203 240 VYLNCAALPESVAESELFGHVKGAFTGAISN-RSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRSLR 318
Cdd:COG3284 376 VAVNCAAIPEELIESELFGYEPGAFTGARRKgRPGKIEQADGGTLFLDEIGDMPLALQARLLRVLQEREVTPLGGTKPIP 455
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489004203 319 VDVRVLAATNRDLRQEVVEGRFRADLYHRLSVFPLSVPPLREREsDVVLLAGYFCEqcRLRMGLARVILAEAARNRLQKW 398
Cdd:COG3284 456 VDVRLIAATHRDLRELVAAGRFREDLYYRLNGLTLTLPPLRERE-DLPALIEHLLR--ELAAGRGPLRLSPEALALLAAY 532
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489004203 399 SWPGNVRELEHAIHRAVVLARATqagdevVLEPQHFQFAVAAPMLPTETAAAAPATGninLREAtdsfQREAISRALEAN 478
Cdd:COG3284 533 PWPGNVRELRNVLRTALALADGG------VITVEDLPDELRAELAAAAPAAAAPLTS---LEEA----ERDAILRALRAC 599
|
330 340
....*....|....*....|....*.
gi 489004203 479 QGNWAATARALELDVANLHRLAKRLG 504
Cdd:COG3284 600 GGNVSAAARALGISRSTLYRKLKRYG 625
|
|
| TyrR |
COG3283 |
Transcriptional regulator TyrR of aromatic amino acids metabolism [Transcription, Amino acid ... |
187-435 |
4.72e-99 |
|
Transcriptional regulator TyrR of aromatic amino acids metabolism [Transcription, Amino acid transport and metabolism];
Pssm-ID: 442513 [Multi-domain] Cd Length: 514 Bit Score: 308.27 E-value: 4.72e-99
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489004203 187 IIGLSGPMLQLKKEIDIVAASDLNVLISGETGTGKELVAKAVHQGSPRAANPLVYLNCAALPESVAESELFGHVKGAFTG 266
Cdd:COG3283 206 IVASSPKMRQVIRQAKKMAMLDAPLLIQGETGTGKELLARACHLASPRGDKPFLALNCAALPDDVAESELFGYAPGAFGN 285
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489004203 267 AISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRSLRVDVRVLAATNRDLRQEVVEGRFRADLYH 346
Cdd:COG3283 286 AREGKKGLFEQANGGTVFLDEIGEMSPQLQAKLLRFLQDGTFRRVGEEQEVKVDVRVICATQKDLAELVQEGEFREDLYY 365
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489004203 347 RLSVFPLSVPPLRERESDVVLLAGYFCEQCRLRMGLARVILAEAARNRLQKWSWPGNVRELEHAIHRAVVLARatqaGDE 426
Cdd:COG3283 366 RLNVLTLTLPPLRERKSDILPLAEHFVARFSQQLGRPRPRLSPDLVDFLQSYPWPGNVRQLENALYRAVSLLE----GDE 441
|
....*....
gi 489004203 427 vvLEPQHFQ 435
Cdd:COG3283 442 --LTPEDLQ 448
|
|
| PRK11361 |
PRK11361 |
acetoacetate metabolism transcriptional regulator AtoC; |
141-489 |
5.61e-95 |
|
acetoacetate metabolism transcriptional regulator AtoC;
Pssm-ID: 183099 [Multi-domain] Cd Length: 457 Bit Score: 295.99 E-value: 5.61e-95
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489004203 141 FSDEELRLIaalvagaLNNALLIARLEAQNVLPAQAvnypLPER---QEIIGLSGPMLQLKKEIDIVAASDLNVLISGET 217
Cdd:PRK11361 107 FDLDELNLI-------VQRALQLQSMKKEIRHLHQA----LSTSwqwGHILTNSPAMMDICKDTAKIALSQASVLISGES 175
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489004203 218 GTGKELVAKAVHQGSPRAANPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQA 297
Cdd:PRK11361 176 GTGKELIARAIHYNSRRAKGPFIKVNCAALPESLLESELFGHEKGAFTGAQTLRQGLFERANEGTLLLDEIGEMPLVLQA 255
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489004203 298 KLLRVLQYGDIQRVGDDRSLRVDVRVLAATNRDLRQEVVEGRFRADLYHRLSVFPLSVPPLRERESDVVLLAGYFCEQCR 377
Cdd:PRK11361 256 KLLRILQEREFERIGGHQTIKVDIRIIAATNRDLQAMVKEGTFREDLFYRLNVIHLILPPLRDRREDISLLANHFLQKFS 335
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489004203 378 LRMGLARVILAEAARNRLQKWSWPGNVRELEHAIHRAVVLARATQAGDEVVLEPQHFQFAVAAPmlptetaAAAPATGNI 457
Cdd:PRK11361 336 SENQRDIIDIDPMAMSLLTAWSWPGNIRELSNVIERAVVMNSGPIIFSEDLPPQIRQPVCNAGE-------VKTAPVGER 408
|
330 340 350
....*....|....*....|....*....|..
gi 489004203 458 NLREATDSFQREAISRALEANQGNWAATARAL 489
Cdd:PRK11361 409 NLKEEIKRVEKRIIMEVLEQQEGNRTRTALML 440
|
|
| PEP_resp_reg |
TIGR02915 |
PEP-CTERM-box response regulator transcription factor; Members of this protein family share ... |
157-506 |
1.22e-91 |
|
PEP-CTERM-box response regulator transcription factor; Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC (see SP|Q06065). These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158). [Regulatory functions, DNA interactions]
Pssm-ID: 274348 [Multi-domain] Cd Length: 445 Bit Score: 287.03 E-value: 1.22e-91
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489004203 157 LNNALLIARLEAQNVLPAQAVNYPlpERQEIIGLSGPMLQLKKEIDIVAASDLNVLISGETGTGKELVAKAVHQGSPRAA 236
Cdd:TIGR02915 113 VDRAFHLYTLETENRRLQSALGGT--ALRGLITSSPGMQKICRTIEKIAPSDITVLLLGESGTGKEVLARALHQLSDRKD 190
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489004203 237 NPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRS 316
Cdd:TIGR02915 191 KRFVAINCAAIPENLLESELFGYEKGAFTGAVKQTLGKIEYAHGGTLFLDEIGDLPLNLQAKLLRFLQERVIERLGGREE 270
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489004203 317 LRVDVRVLAATNRDLRQEVVEGRFRADLYHRLSVFPLSVPPLRERESDVVLLAGYFCEQCRLRMGLARVILAEAARNRLQ 396
Cdd:TIGR02915 271 IPVDVRIVCATNQDLKRMIAEGTFREDLFYRIAEISITIPPLRSRDGDAVLLANAFLERFARELKRKTKGFTDDALRALE 350
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489004203 397 KWSWPGNVRELEHAIHRAVVLARATQagdevvlepqhfqfaVAAPMLPTETAAAAPATGNINLREATDSFQREAISRALE 476
Cdd:TIGR02915 351 AHAWPGNVRELENKVKRAVIMAEGNQ---------------ITAEDLGLDARERAETPLEVNLREVRERAEREAVRKAIA 415
|
330 340 350
....*....|....*....|....*....|
gi 489004203 477 ANQGNWAATARALELDVANLHRLAKRLGLK 506
Cdd:TIGR02915 416 RVDGNIARAAELLGITRPTLYDLMKKHGIK 445
|
|
| PRK15429 |
PRK15429 |
formate hydrogenlyase transcriptional activator FlhA; |
116-421 |
3.39e-91 |
|
formate hydrogenlyase transcriptional activator FlhA;
Pssm-ID: 237965 [Multi-domain] Cd Length: 686 Bit Score: 292.89 E-value: 3.39e-91
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489004203 116 LPLFAGQTLIGALTLDGMDADRFDSFSDEELRLIAALVAGALNNAL-------LIARLEAQNVLPAQAVNYPLPERQEII 188
Cdd:PRK15429 300 LPLMSGDTMLGVLKLAQCEEKVFTTTNLKLLRQIAERVAIAVDNALayqeihrLKERLVDENLALTEQLNNVDSEFGEII 379
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489004203 189 GLSGPMLQLKKEIDIVAASDLNVLISGETGTGKELVAKAVHQGSPRAANPLVYLNCAALPESVAESELFGHVKGAFTGAI 268
Cdd:PRK15429 380 GRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGAS 459
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489004203 269 SNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRSLRVDVRVLAATNRDLRQEVVEGRFRADLYHRL 348
Cdd:PRK15429 460 AQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRL 539
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 489004203 349 SVFPLSVPPLRERESDVVLLAGYFCEQCRLRMGLA-RVILAEAARNrLQKWSWPGNVRELEHAIHRAVVLARAT 421
Cdd:PRK15429 540 NVFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNiDSIPAETLRT-LSNMEWPGNVRELENVIERAVLLTRGN 612
|
|
| RNA_repair_RtcR |
NF038308 |
RNA repair transcriptional activator RtcR; |
187-506 |
2.06e-90 |
|
RNA repair transcriptional activator RtcR;
Pssm-ID: 468466 [Multi-domain] Cd Length: 527 Bit Score: 286.38 E-value: 2.06e-90
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489004203 187 IIGLSGPMLQLKKEIDIVA-ASDLNVLISGETGTGKELVAKAVHQGSPRA---ANPLVYLNCAALPESVAESELFGHVKG 262
Cdd:NF038308 181 IATRNAAFNRLIEQIERVAlRSRAPILLTGPTGAGKSFLARRIYELKKRRhqvSGPFVEVNCATLRGDLAMSELFGHVKG 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489004203 263 AFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRSLRVDVRVLAATNRDLRQEVVEGRFRA 342
Cdd:NF038308 261 AFTGAQADRAGLLRAADGGTLFLDEIGELGLDEQAMLLRAIEEKRFLPVGSDKEVSSDFQLIAGTNRDLRQEVAEGRFRE 340
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489004203 343 DLYHRLSVFPLSVPPLRERESDVVLLAGYFCEQCRLRMGLARVILAEA-----ARNRLQKWSWPGNVRELEHAIHRAVVL 417
Cdd:NF038308 341 DLYARINLWTFRLPGLRERREDIEPNLDYELDRFARELGRQVRFNKEArfrylAFATSPEALWPGNFRELSASVTRMATL 420
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489004203 418 ARATQAGDEVV------LEPQHFQFAVAAPMLPTETAAAAPATGNINLReatDSFQREAISRALEANQGNWAATARAL-- 489
Cdd:NF038308 421 ADGGRITEELVeeeiarLRAAWQSAPAAADDDALADLLGGEQLAELDLF---DRVQLAAVLRVCRQSRSLSAAGRRLFgv 497
|
330 340
....*....|....*....|....
gi 489004203 490 ---ELDVAN-LHRLAK---RLGLK 506
Cdd:NF038308 498 srqQKASPNdADRLRKylaRFGLS 521
|
|
| FhlA |
COG3604 |
FhlA-type transcriptional regulator, contains GAF, AAA-type ATPase, and DNA-binding Fis ... |
42-506 |
1.54e-88 |
|
FhlA-type transcriptional regulator, contains GAF, AAA-type ATPase, and DNA-binding Fis domains [Transcription, Signal transduction mechanisms];
Pssm-ID: 442823 [Multi-domain] Cd Length: 338 Bit Score: 275.19 E-value: 1.54e-88
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489004203 42 ALLRYEAHQFVPLAIDGLAQDVLGRRFALEGHPRLEAI--ARAGDVVRFPADSDLPDPYDGLIPGHESLKVHACVGLPLF 119
Cdd:COG3604 3 LALRLLGLPLLLLLALALLLLVLLLLALLLRGDLLASAlvLEESLELLALALSEALLAAQARQAALAARERQLFLGVPLR 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489004203 120 AGQTLIGALTLDGMDADRFDSFSDEELRLIAALVAGAlnnalliarleaqnvlpaqavnyplperqeiiglsgpmlqlkk 199
Cdd:COG3604 83 VGGEVLGVLTLDSRRPGAFSEEDLRLLETLASLAAVA------------------------------------------- 119
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489004203 200 eidivaasdlnvlISGETGTGKELVAKAVHQGSPRAANPLVYLNCAALPESVAESelfghvkgaftgaisnrsgkfemad 279
Cdd:COG3604 120 -------------ILGETGTGKELVANAIHELSPRADKPFVKVNCAALPESLLES------------------------- 161
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489004203 280 ngtlfldeigelslalqakllrvLQYGDIQRVGDDRSLRVDVRVLAATNRDLRQEVVEGRFRADLYHRLSVFPLSVPPLR 359
Cdd:COG3604 162 -----------------------LQEGEFERVGGDETIKVDVRIIAATNRDLEEEVAEGRFREDLYYRLNVFPIRLPPLR 218
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489004203 360 ERESDVVLLAGYFCEQCRLRMGLARVILAEAARNRLQKWSWPGNVRELEHAIHRAVVLARATqagdevVLEPQHFQFAVa 439
Cdd:COG3604 219 ERREDIPLLAEHFLEKFSRRLGKPILRLSPEALEALMAYPWPGNVRELENVIERAVILAEGG------VLDADDLAPGS- 291
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 489004203 440 apmlptetaaaapatgninlREATDSFQREAISRALEANQGNWAATARALELDVANLHRLAKRLGLK 506
Cdd:COG3604 292 --------------------REALEEVEREHILEALERTGGNIAGAARLLGLTPSTLRSRMKKLGIK 338
|
|
| phageshock_pspF |
TIGR02974 |
psp operon transcriptional activator PspF; Members of this protein family are PspF, the ... |
187-502 |
6.25e-88 |
|
psp operon transcriptional activator PspF; Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH [Regulatory functions, DNA interactions]
Pssm-ID: 274371 [Multi-domain] Cd Length: 329 Bit Score: 273.40 E-value: 6.25e-88
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489004203 187 IIGLSGPMLQLKKEIDIVAASDLNVLISGETGTGKELVAKAVHQGSPRAANPLVYLNCAALPESVAESELFGHVKGAFTG 266
Cdd:TIGR02974 1 LIGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSELFGHEAGAFTG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489004203 267 AISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRSLRVDVRVLAATNRDLRQEVVEGRFRADLYH 346
Cdd:TIGR02974 81 AQKRHQGRFERADGGTLFLDELATASLLVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNADLPALAAEGRFRADLLD 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489004203 347 RLSVFPLSVPPLRERESDVVLLAGYFCEQCRLRMGL-ARVILAEAARNRLQKWSWPGNVRELEHAIHRAVV-LARATQAG 424
Cdd:TIGR02974 161 RLAFDVITLPPLRERQEDIMLLAEHFAIRMARELGLpLFPGFTPQAREQLLEYHWPGNVRELKNVVERSVYrHGLEEAPI 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489004203 425 DEVVLEP-----QHFQFAVAAPMLPTETAAAAPATGN-----INLREATDSFQREAISRALEANQGNWAATARALELDVA 494
Cdd:TIGR02974 241 DEIIIDPfaspwRPKQAAPAVDEVNSTPTDLPSPSSIaaafpLDLKQAQQDYEIELLQQALAEAQFNQRKAAELLGLTYH 320
|
....*...
gi 489004203 495 NLHRLAKR 502
Cdd:TIGR02974 321 QLRGLLRK 328
|
|
| ntrC |
TIGR01818 |
nitrogen regulation protein NR(I); This model represents NtrC, a DNA-binding response ... |
151-503 |
1.26e-87 |
|
nitrogen regulation protein NR(I); This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc. [Central intermediary metabolism, Nitrogen metabolism, Regulatory functions, DNA interactions, Signal transduction, Two-component systems]
Pssm-ID: 273818 [Multi-domain] Cd Length: 463 Bit Score: 277.00 E-value: 1.26e-87
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489004203 151 ALVAGALNNAlliarlEAQNVLPA-QAVNYPLPErqeIIGLSGPMLQLKKEIDIVAASDLNVLISGETGTGKELVAKAVH 229
Cdd:TIGR01818 108 TLVERALAHA------QEQVALPAdAGEAEDSAE---LIGEAPAMQEVFRAIGRLSRSDITVLINGESGTGKELVARALH 178
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489004203 230 QGSPRAANPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQ 309
Cdd:TIGR01818 179 RHSPRANGPFIALNMAAIPKDLIESELFGHEKGAFTGANTRRQGRFEQADGGTLFLDEIGDMPLDAQTRLLRVLADGEFY 258
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489004203 310 RVGDDRSLRVDVRVLAATNRDLRQEVVEGRFRADLYHRLSVFPLSVPPLRERESDVVLLAGYFCEQCRLRMGLARVILAE 389
Cdd:TIGR01818 259 RVGGRTPIKVDVRIVAATHQNLEALVRQGKFREDLFHRLNVIRIHLPPLRERREDIPRLARHFLALAARELDVEPKLLDP 338
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489004203 390 AARNRLQKWSWPGNVRELEHAIHRAVVLAratqAGDEV---VLEPQ--HFQFAVAAP----------MLPTETAAAAPAT 454
Cdd:TIGR01818 339 EALERLKQLRWPGNVRQLENLCRWLTVMA----SGDEVlvsDLPAElaLTGRPASAPdsdgqdswdeALEAWAKQALSRG 414
|
330 340 350 360
....*....|....*....|....*....|....*....|....*....
gi 489004203 455 GNINLREATDSFQREAISRALEANQGNWAATARALELDVANLHRLAKRL 503
Cdd:TIGR01818 415 EQGLLDRALPEFERPLLEAALQHTRGHKQEAAALLGWGRNTLTRKLKEL 463
|
|
| PRK10365 |
PRK10365 |
sigma-54-dependent response regulator transcription factor ZraR; |
149-489 |
1.69e-83 |
|
sigma-54-dependent response regulator transcription factor ZraR;
Pssm-ID: 182412 [Multi-domain] Cd Length: 441 Bit Score: 265.74 E-value: 1.69e-83
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489004203 149 IAALVAGALN---NALLIARLEA---QNVLPAQAVNYPLP----ERQEIIGLSGPMLQLKKEIDIVAASDLNVLISGETG 218
Cdd:PRK10365 93 VEALKTGALDyliKPLDFDNLQAtleKALAHTHSIDAETPavtaSQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSG 172
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489004203 219 TGKELVAKAVHQGSPRAANPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAK 298
Cdd:PRK10365 173 TGKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDISPMMQVR 252
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489004203 299 LLRVLQYGDIQRVGDDRSLRVDVRVLAATNRDLRQEVVEGRFRADLYHRLSVFPLSVPPLRERESDVVLLAGYFCEQCRL 378
Cdd:PRK10365 253 LLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAAEVNAGRFRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAE 332
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489004203 379 RMGLARVILAEAARNRLQKWSWPGNVRELEHAIHRAVVLARAtqagdEVVLEpQHFQFAVAAPMLptetaaaaPATGNIN 458
Cdd:PRK10365 333 RNRKAVKGFTPQAMDLLIHYDWPGNIRELENAVERAVVLLTG-----EYISE-RELPLAIASTPI--------PLGQSQD 398
|
330 340 350
....*....|....*....|....*....|.
gi 489004203 459 LREATDsFQREAISRALEANQGNWAATARAL 489
Cdd:PRK10365 399 IQPLVE-VEKEVILAALEKTGGNKTEAARQL 428
|
|
| PRK15115 |
PRK15115 |
response regulator GlrR; Provisional |
184-428 |
9.21e-77 |
|
response regulator GlrR; Provisional
Pssm-ID: 185070 [Multi-domain] Cd Length: 444 Bit Score: 248.21 E-value: 9.21e-77
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489004203 184 RQEIIGLSGPMLQLKKEIDIVAASDLNVLISGETGTGKELVAKAVHQGSPRAANPLVYLNCAALPESVAESELFGHVKGA 263
Cdd:PRK15115 133 REAIVTRSPLMLRLLEQARMVAQSDVSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLLESELFGHARGA 212
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489004203 264 FTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRSLRVDVRVLAATNRDLRQEVVEGRFRAD 343
Cdd:PRK15115 213 FTGAVSNREGLFQAAEGGTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHRDLPKAMARGEFRED 292
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489004203 344 LYHRLSVFPLSVPPLRERESDVVLLAGYFCEQCRLRMGLARVILAEAARNRLQKWSWPGNVRELEHAIHRAVVLARATQA 423
Cdd:PRK15115 293 LYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVIEQCVALTSSPVI 372
|
....*
gi 489004203 424 GDEVV 428
Cdd:PRK15115 373 SDALV 377
|
|
| PRK15424 |
PRK15424 |
propionate catabolism operon regulatory protein PrpR; Provisional |
150-489 |
2.60e-76 |
|
propionate catabolism operon regulatory protein PrpR; Provisional
Pssm-ID: 237963 [Multi-domain] Cd Length: 538 Bit Score: 250.02 E-value: 2.60e-76
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489004203 150 AALVAGALNNALLIARLEAQNvLPAQAVNYPLPERQE---IIGLSGPMLQLKKEIDIVAASDLNVLISGETGTGKELVAK 226
Cdd:PRK15424 182 AATVRQAFEDALDMTRMTLRH-NTHYATRNALRTRYVlgdLLGQSPQMEQVRQTILLYARSSAAVLIQGETGTGKELAAQ 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489004203 227 AVHQGSP--------RAANPLVYLNCAALPESVAESELFGHVKGAFTGAI-SNRSGKFEMADNGTLFLDEIGELSLALQA 297
Cdd:PRK15424 261 AIHREYFarhdarqgKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRrGGRAGLFEIAHGGTLFLDEIGEMPLPLQT 340
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489004203 298 KLLRVLQYGDIQRVGDDRSLRVDVRVLAATNRDLRQEVVEGRFRADLYHRLSVFPLSVPPLRERESDVVLLAGYFceqcr 377
Cdd:PRK15424 341 RLLRVLEEKEVTRVGGHQPVPVDVRVISATHCDLEEDVRQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESF----- 415
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489004203 378 LRMGLA--RVILAEAARNRLQ-------KWSWPGNVRELEHAIHRavvLARATQAGDEVVLEPQhfQFAVAAPMLPTETA 448
Cdd:PRK15424 416 LKQSLAalSAPFSAALRQGLQqcetlllHYDWPGNVRELRNLMER---LALFLSVEPTPDLTPQ--FLQLLLPELARESA 490
|
330 340 350 360
....*....|....*....|....*....|....*....|.
gi 489004203 449 AaapatgninLREATDSFqrEAISRALEANQGNWAATARAL 489
Cdd:PRK15424 491 K---------TPAPRLLA--ATLQQALERFNGDKTAAANYL 520
|
|
| glnG |
PRK10923 |
nitrogen regulation protein NR(I); Provisional |
186-506 |
4.15e-76 |
|
nitrogen regulation protein NR(I); Provisional
Pssm-ID: 182842 [Multi-domain] Cd Length: 469 Bit Score: 247.48 E-value: 4.15e-76
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489004203 186 EIIGLSGPMLQLKKEIDIVAASDLNVLISGETGTGKELVAKAVHQGSPRAANPLVYLNCAALPESVAESELFGHVKGAFT 265
Cdd:PRK10923 139 DIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFT 218
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489004203 266 GAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRSLRVDVRVLAATNRDLRQEVVEGRFRADLY 345
Cdd:PRK10923 219 GANTIRQGRFEQADGGTLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLF 298
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489004203 346 HRLSVFPLSVPPLRERESDVVLLAGYFCEQCRLRMGLARVILAEAARNRLQKWSWPGNVRELEHAIHRAVVLAratqAGD 425
Cdd:PRK10923 299 HRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENTCRWLTVMA----AGQ 374
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489004203 426 EVV---LEPQHFQFAVAA----------PMLPTETAAAAPATGNIN-LREATDSFQREAISRALEANQGNWAATARALEL 491
Cdd:PRK10923 375 EVLiqdLPGELFESTVPEstsqmqpdswATLLAQWADRALRSGHQNlLSEAQPELERTLLTTALRHTQGHKQEAARLLGW 454
|
330
....*....|....*
gi 489004203 492 DVANLHRLAKRLGLK 506
Cdd:PRK10923 455 GRNTLTRKLKELGME 469
|
|
| PRK10820 |
PRK10820 |
transcriptional regulator TyrR; |
183-504 |
4.23e-74 |
|
transcriptional regulator TyrR;
Pssm-ID: 236769 [Multi-domain] Cd Length: 520 Bit Score: 243.44 E-value: 4.23e-74
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489004203 183 ERQEIIGLSGPMLQLKKEIDIVAASDLNVLISGETGTGKELVAKAVHQGSPRAANPLVYLNCAALPESVAESELFGHVKG 262
Cdd:PRK10820 202 AFSQIVAVSPKMRQVVEQARKLAMLDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIPDDVVESELFGHAPG 281
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489004203 263 AFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRSLRVDVRVLAATNRDLRQEVVEGRFRA 342
Cdd:PRK10820 282 AYPNALEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGEFRE 361
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489004203 343 DLYHRLSVFPLSVPPLRERESDVVLLAGYFCEQCRLRMGLARVILAEAARNRLQKWSWPGNVRELEHAIHRAVvlaraTQ 422
Cdd:PRK10820 362 DLYYRLNVLTLNLPPLRDRPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYGWPGNVRQLKNAIYRAL-----TQ 436
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489004203 423 -AGDEvvLEPQHFQ---FAVAAPMlptetaAAAPATGniNLREATDSFQREAISRaleanqgnwaataraLELDVANLHR 498
Cdd:PRK10820 437 lEGYE--LRPQDILlpdYDAAVAV------GEDAMEG--SLDEITSRFERSVLTR---------------LYRNYPSTRK 491
|
....*.
gi 489004203 499 LAKRLG 504
Cdd:PRK10820 492 LAKRLG 497
|
|
| propionate_PrpR |
TIGR02329 |
propionate catabolism operon regulatory protein PrpR; At least five distinct pathways exists ... |
150-498 |
5.80e-73 |
|
propionate catabolism operon regulatory protein PrpR; At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR. [Regulatory functions, DNA interactions]
Pssm-ID: 274079 [Multi-domain] Cd Length: 526 Bit Score: 240.92 E-value: 5.80e-73
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489004203 150 AALVAGALNNALLIARLE--AQNVLPAQAVNYPLPERQ---EIIGLSGPMLQLKKEIDIVAASDLNVLISGETGTGKELV 224
Cdd:TIGR02329 172 ADSVRQAFDDALDVARATrlRQAATLRSATRNQLRTRYrldDLLGASAPMEQVRALVRLYARSDATVLILGESGTGKELV 251
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489004203 225 AKAVHQGSPRAANPLVYLNCAALPESVAESELFGHVKGAFTGA-ISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVL 303
Cdd:TIGR02329 252 AQAIHQLSGRRDFPFVAINCGAIAESLLEAELFGYEEGAFTGArRGGRTGLIEAAHRGTLFLDEIGEMPLPLQTRLLRVL 331
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489004203 304 QYGDIQRVGDDRSLRVDVRVLAATNRDLRQEVVEGRFRADLYHRLSVFPLSVPPLRERESDVVLLAGYFCEQCRLRMGL- 382
Cdd:TIGR02329 332 EEREVVRVGGTEPVPVDVRVVAATHCALTTAVQQGRFRRDLFYRLSILRIALPPLRERPGDILPLAAEYLVQAAAALRLp 411
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489004203 383 ---ARVILAEAARNRLQKWSWPGNVRELEHAIHRAVVLARATQAGDevvLEPQHFQfaVAAPMLPTETAAAAPATGNINL 459
Cdd:TIGR02329 412 dseAAAQVLAGVADPLQRYPWPGNVRELRNLVERLALELSAMPAGA---LTPDVLR--ALAPELAEASGKGKTSALSLRE 486
|
330 340 350
....*....|....*....|....*....|....*....
gi 489004203 460 REATDSfqrEAISRALEANQGNWAATARALELDVANLHR 498
Cdd:TIGR02329 487 RSRVEA---LAVRAALERFGGDRDAAAKALGISRTTLWR 522
|
|
| pspF |
PRK11608 |
phage shock protein operon transcriptional activator; Provisional |
211-502 |
5.39e-71 |
|
phage shock protein operon transcriptional activator; Provisional
Pssm-ID: 236936 [Multi-domain] Cd Length: 326 Bit Score: 229.56 E-value: 5.39e-71
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489004203 211 VLISGETGTGKELVAKAVHQGSPRAANPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGE 290
Cdd:PRK11608 32 VLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELAT 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489004203 291 LSLALQAKLLRVLQYGDIQRVGDDRSLRVDVRVLAATNRDLRQEVVEGRFRADLYHRLSVFPLSVPPLRERESDVVLLAG 370
Cdd:PRK11608 112 APMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVAEGKFRADLLDRLAFDVVQLPPLRERQSDIMLMAE 191
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489004203 371 YFCEQ-CRlRMGLARVI-LAEAARNRLQKWSWPGNVRELEHAIHRAVVL-ARATQAGDEVVLEPqhFQFAVAAPMLPTET 447
Cdd:PRK11608 192 HFAIQmCR-ELGLPLFPgFTERARETLLNYRWPGNIRELKNVVERSVYRhGTSEYPLDNIIIDP--FKRRPAEEAIAVSE 268
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*
gi 489004203 448 AAAAPATgNINLREATDSFQREAISRALEANQGNWAATARALELDVANLHRLAKR 502
Cdd:PRK11608 269 TTSLPTL-PLDLREWQHQQEKELLQRSLQQAKFNQKRAAELLGLTYHQLRALLKK 322
|
|
| PRK11388 |
PRK11388 |
DNA-binding transcriptional regulator DhaR; Provisional |
211-505 |
1.56e-45 |
|
DNA-binding transcriptional regulator DhaR; Provisional
Pssm-ID: 183114 [Multi-domain] Cd Length: 638 Bit Score: 169.09 E-value: 1.56e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489004203 211 VLISGETGTGKELVAKAVHQGSPRAANPLVYLNCAALPESVAESELFGhvkGAFTGAISNRSGKFEMADNGTLFLDEIGE 290
Cdd:PRK11388 351 VLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPDEALAEEFLG---SDRTDSENGRLSKFELAHGGTLFLEKVEY 427
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489004203 291 LSLALQAKLLRVLQYGDIQRVGDDRSLRVDVRVLAATNRDLRQEVVEGRFRADLYHRLSVFPLSVPPLRERESDVVLLAg 370
Cdd:PRK11388 428 LSPELQSALLQVLKTGVITRLDSRRLIPVDVRVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRREDIPALV- 506
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489004203 371 yfceQCRLRMGLAR----VILAEAARNRLQKWSWPGNVRELEHAIHRAVVLARATQAGDEVVlePQHFQFAVAApmlptE 446
Cdd:PRK11388 507 ----NNKLRSLEKRfstrLKIDDDALARLVSYRWPGNDFELRSVIENLALSSDNGRIRLSDL--PEHLFTEQAT-----D 575
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*....
gi 489004203 447 TAAAAPATGNINLREAtdsfQREAISRALEANQGNWAATARALELDVANLHRLAKRLGL 505
Cdd:PRK11388 576 DVSATRLSTSLSLAEL----EKEAIINAAQVCGGRIQEMAALLGIGRTTLWRKMKQHGI 630
|
|
| RtcR |
COG4650 |
Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a ... |
196-428 |
4.33e-40 |
|
Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription, Signal transduction mechanisms];
Pssm-ID: 443688 [Multi-domain] Cd Length: 534 Bit Score: 152.29 E-value: 4.33e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489004203 196 QLKKEIDIVA-ASDLNVLISGETGTGKELVA-------KAVHQgsprAANPLVYLNCAALPESVAESELFGHVKGAFTGA 267
Cdd:COG4650 195 RLIEQIERVAiRSRAPILLTGPTGAGKSQLArriyelkKARHQ----VSGRFVEVNCATLRGDGAMSALFGHVKGAFTGA 270
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489004203 268 ISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRSLRVDVRVLAATNRDLRQEVVEGRFRADLYHR 347
Cdd:COG4650 271 VSDRAGLLRSADGGVLFLDEIGELGLDEQAMLLRAIEEKRFLPVGSDKEVSSDFQLIAGTNRDLRQEVAEGRFREDLLAR 350
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489004203 348 LSVFPLSVPPLRERESDVVLLAGYFCEQCRLRMGLARVILAEAARNRLQ-----KWSWPGNVRELEHAIHRAVVLARATQ 422
Cdd:COG4650 351 INLWTFRLPGLAERREDIEPNLDYELARFAREQGRRVRFNKEARARYLAfatspEALWSGNFRDLNASVTRMATLAEGGR 430
|
....*.
gi 489004203 423 AGDEVV 428
Cdd:COG4650 431 ITVALV 436
|
|
| PspF |
COG1221 |
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain ... |
209-361 |
2.42e-24 |
|
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription, Signal transduction mechanisms];
Pssm-ID: 440834 [Multi-domain] Cd Length: 835 Bit Score: 107.12 E-value: 2.42e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489004203 209 LNVLISGETGTGKELVAKAVHQ-------GSPRAanPLVYLNCAAL---PESVAeSELFGHVKGAFTGAISNRSGKFEMA 278
Cdd:COG1221 131 LHTLILGPTGVGKSFFAELMYEyaieigvLPEDA--PFVVFNCADYannPQLLM-SQLFGYVKGAFTGADKDKEGLIEKA 207
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489004203 279 DNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGD-DRSLRVDVRVLAATNRDLRqevvegrfradlyhrlSVF------ 351
Cdd:COG1221 208 DGGILFLDEVHRLPPEGQEMLFTFMDKGIYRRLGEtEKTRKANVRIIFATTEDPE----------------SSLlktflr 271
|
170
....*....|....
gi 489004203 352 --PLSV--PPLRER 361
Cdd:COG1221 272 riPMVIklPSLEER 285
|
|
| AAA |
cd00009 |
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ... |
206-349 |
1.32e-23 |
|
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Pssm-ID: 99707 [Multi-domain] Cd Length: 151 Bit Score: 96.83 E-value: 1.32e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489004203 206 ASDLNVLISGETGTGKELVAKAVHQGSPRAANPLVYLNCAALPESVAESELFGHVkgaftgAISNRSGKFEMADNGTLFL 285
Cdd:cd00009 17 PPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHF------LVRLLFELAEKAKPGVLFI 90
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 489004203 286 DEIGELSLALQAKLLRVLQYGDiqrvgDDRSLRVDVRVLAATNRDLrqevvEGRFRADLYHRLS 349
Cdd:cd00009 91 DEIDSLSRGAQNALLRVLETLN-----DLRIDRENVRVIGATNRPL-----LGDLDRALYDRLD 144
|
|
| Sigma54_activ_2 |
pfam14532 |
Sigma-54 interaction domain; |
188-358 |
3.03e-21 |
|
Sigma-54 interaction domain;
Pssm-ID: 434021 [Multi-domain] Cd Length: 138 Bit Score: 89.71 E-value: 3.03e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489004203 188 IGLSGPMLQLKKEIDIVAASDLNVLISGETGTGKELVAKAVHQGSPRAANPLVYLNCAALPESVaeselfghvkgaftga 267
Cdd:pfam14532 1 LGASAAIQEIKRRLEQAAQSTLPVFLTGEPGSGKEFCARYLHNPSTPWVQPFDIEYLAHAPLEL---------------- 64
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489004203 268 isnrsgkFEMADNGTLFLDEIGELSLALQAKLLRVLQYGDiqrvgddrslRVDVRVLAATNRDLRQEVVEGRFRADLYHR 347
Cdd:pfam14532 65 -------LEQAKGGTLYLKDIADLSKALQKGLLLLLAKAE----------GYRVRLVCTSSKDLPQLAAAGLFDEQLYFE 127
|
170
....*....|.
gi 489004203 348 LSVFPLSVPPL 358
Cdd:pfam14532 128 LSALRLHVPPL 138
|
|
| GAF |
smart00065 |
Domain present in phytochromes and cGMP-specific phosphodiesterases; Mutations within these ... |
21-167 |
8.75e-13 |
|
Domain present in phytochromes and cGMP-specific phosphodiesterases; Mutations within these domains in PDE6B result in autosomal recessive inheritance of retinitis pigmentosa.
Pssm-ID: 214500 [Multi-domain] Cd Length: 149 Bit Score: 65.87 E-value: 8.75e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489004203 21 HTDRFSRLITTLRQILGCDASALLRY---EAHQFVPLAIDGLAQDVLGRRFALEgHPRLEAIARAGDVVRFPADSDLPDP 97
Cdd:smart00065 2 LEELLQTILEELRQLLGADRVLIYLVdenDRGELVLVAADGLTLPTLGIRFPLD-EGLAGRVAETGRPLNIPDVEADPLF 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 489004203 98 YDGLIPGHEslKVHACVGLPLFAGQTLIGALTLDGMDADRFdsFSDEELRL---IAALVAGALNNALLIARLE 167
Cdd:smart00065 81 AEDLLGRYQ--GVRSFLAVPLVADGELVGVLALHNKKSPRP--FTEEDEELlqaLANQLAIALANAQLYEELR 149
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
210-348 |
1.28e-10 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 59.69 E-value: 1.28e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489004203 210 NVLISGETGTGKELVAKAVHQGSPRAANPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGK--FEMA---DNGTLF 284
Cdd:smart00382 4 VILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRlaLALArklKPDVLI 83
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 489004203 285 LDEIGELSLALQAKLLRVLQygdIQRVGDDRSLRVDVRVLAATNR--DLRQEVVEGRFRADLYHRL 348
Cdd:smart00382 84 LDEITSLLDAEQEALLLLLE---ELRLLLLLKSEKNLTVILTTNDekDLGPALLRRRFDRRIVLLL 146
|
|
| GAF |
pfam01590 |
GAF domain; This domain is present in cGMP-specific phosphodiesterases, adenylyl and guanylyl ... |
23-157 |
1.72e-08 |
|
GAF domain; This domain is present in cGMP-specific phosphodiesterases, adenylyl and guanylyl cyclases, phytochromes, FhlA and NifA. Adenylyl and guanylyl cyclases catalyze ATP and GTP to the second messengers cAMP and cGMP, respectively, these products up-regulating catalytic activity by binding to the regulatory GAF domain(s). The opposite hydrolysis reaction is catalyzed by phosphodiesterase. cGMP-dependent 3',5'-cyclic phosphodiesterase catalyzes the conversion of guanosine 3',5'-cyclic phosphate to guanosine 5'-phosphate. Here too, cGMP regulates catalytic activity by GAF-domain binding. Phytochromes are regulatory photoreceptors in plants and bacteria which exist in two thermally-stable states that are reversibly inter-convertible by light: the Pr state absorbs maximally in the red region of the spectrum, while the Pfr state absorbs maximally in the far-red region. This domain is also found in FhlA (formate hydrogen lyase transcriptional activator) and NifA, a transcriptional activator which is required for activation of most Nif operons which are directly involved in nitrogen fixation. NifA interacts with sigma-54. This domain can bind biliverdine and phycocyanobilin (Matilla et al., FEMS Microbiology Reviews, fuab043, 45, 2021, 1. https://doi.org/10.1093/femsre/fuab043).
Pssm-ID: 460259 [Multi-domain] Cd Length: 133 Bit Score: 53.25 E-value: 1.72e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489004203 23 DRFSRLITTLRQILGCDASALLRYEAHQfVPLAIDGLAQDVLGRRFALEGHPRleAIARAGDVVRFPADSDLPDpYDGLI 102
Cdd:pfam01590 4 EILQTILEELRELLGADRCALYLPDADG-LEYLPPGARWLKAAGLEIPPGTGV--TVLRTGRPLVVPDAAGDPR-FLDPL 79
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*...
gi 489004203 103 PGHESLKVHACVGLPLFAGQTLIGALTLDgmdaDRFDSFSDEELRL---IAALVAGAL 157
Cdd:pfam01590 80 LLLRNFGIRSLLAVPIIDDGELLGVLVLH----HPRPPFTEEELELlevLADQVAIAL 133
|
|
| PtsP |
COG3605 |
Signal transduction protein containing GAF and PtsI domains [Signal transduction mechanisms]; |
6-176 |
5.12e-08 |
|
Signal transduction protein containing GAF and PtsI domains [Signal transduction mechanisms];
Pssm-ID: 442824 [Multi-domain] Cd Length: 188 Bit Score: 52.98 E-value: 5.12e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489004203 6 DELARIAIDLQSDIGHTDRFSRLITTLRQILGCDASA--LLRYEAHQFVPLAIDGLAQDVLGR-----------RFALEG 72
Cdd:COG3605 4 KALRRISEAVASALDLDEALDRIVRRIAEALGVDVCSiyLLDPDGGRLELRATEGLNPEAVGKvrlplgeglvgLVAERG 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489004203 73 HP-RLEAIARAGDVVRFPAdsdlpdpydgliPGHEslKVHACVGLPLFAGQTLIGALTLDGMDADRFDSfSDEE-LRLIA 150
Cdd:COG3605 84 EPlNLADAASHPRFKYFPE------------TGEE--GFRSFLGVPIIRRGRVLGVLVVQSREPREFTE-EEVEfLVTLA 148
|
170 180
....*....|....*....|....*.
gi 489004203 151 ALVAGALNNALLIARLEAQNVLPAQA 176
Cdd:COG3605 149 AQLAEAIANAELLGELRAALAELSLA 174
|
|
| AAA |
pfam00004 |
ATPase family associated with various cellular activities (AAA); AAA family proteins often ... |
211-329 |
4.35e-04 |
|
ATPase family associated with various cellular activities (AAA); AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes.
Pssm-ID: 459627 [Multi-domain] Cd Length: 130 Bit Score: 40.27 E-value: 4.35e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489004203 211 VLISGETGTGKELVAKAVHQGSPRaanPLVYLNCAAL-PESVAESElfGHVKGAFTGAISNRSgkfemadnGTLFLDEI- 288
Cdd:pfam00004 1 LLLYGPPGTGKTTLAKAVAKELGA---PFIEISGSELvSKYVGESE--KRLRELFEAAKKLAP--------CVIFIDEId 67
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|.
gi 489004203 289 ----------GELSLALQAKLLRVLQygdiqrvgDDRSLRVDVRVLAATNR 329
Cdd:pfam00004 68 alagsrgsggDSESRRVVNQLLTELD--------GFTSSNSKVIVIAATNR 110
|
|
| GAF |
COG2203 |
GAF domain [Signal transduction mechanisms]; |
8-507 |
1.44e-03 |
|
GAF domain [Signal transduction mechanisms];
Pssm-ID: 441805 [Multi-domain] Cd Length: 712 Bit Score: 41.33 E-value: 1.44e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489004203 8 LARIAIDLQSDIGHTDRFSRLITTLRQILGCDASALLRYEA--HQFVPLAIDGLAQDVLgRRFALEGHPRLEAIaRAGDV 85
Cdd:COG2203 195 LNEISQALRSALDLEELLQRILELAGELLGADRGAILLVDEdgGELELVAAPGLPEEEL-GRLPLGEGLAGRAL-RTGEP 272
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489004203 86 VRFPADSDLPDPYDGLIPGHESLKVHACVGLPLFAGQTLIGALTLDGMDADRFDSFSDEELRLIAALVAGALNNALLIAR 165
Cdd:COG2203 273 VVVNDASTDPRFAPSLRELLLALGIRSLLCVPLLVDGRLIGVLALYSKEPRAFTEEDLELLEALADQAAIAIERARLYEA 352
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489004203 166 LEAQnvlpAQAVNYPLPERQEIIGLSGPMLQLKKEIDIVAASDLNVLISGETGTGKELVAKAVHQGSPRAANPLVYLNCA 245
Cdd:COG2203 353 LEAA----LAALLQELALLRLLLDLELTLLRLRQLLLELLLALLLLLSLLGAELLLLLLDAADLSGLLALEGLLLLDLLL 428
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489004203 246 ALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRSLRVDVRVLA 325
Cdd:COG2203 429 LLLLLRRILLLRVLRRLLLGDEEGLVLLLALAELELLEILELLVLLAVILLALALLAALLLLLLLLLALLALSALAVLAS 508
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489004203 326 ATNRDLRQEVVEGRFRADLYHRLSVFPLSVPPLRERESDVVLLAGYFCEQCRLRMGLARVILAEAARNRLQKWSWPGNVR 405
Cdd:COG2203 509 LLLALLLLLLLLLLLLLLGLLAALAADLLLLAAALLEDLLILLLVLLLERELLTLVGVLLLLGLSVLLIELALALILALA 588
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489004203 406 ELEHAIHRAVVLARATQAGDEVVLEPQHFQFAVAAPMLPTETAAAAPATGNINLREATDSFQREAISRALEANQGNWAAT 485
Cdd:COG2203 589 LLELLLVAVGDLLLLERDLLLLLVLLVRLLLELLVVTLELTVLVVLAAVEDSALLLRLALALASLVLLRALLATELDLIL 668
|
490 500
....*....|....*....|..
gi 489004203 486 ARALELDVANLHRLAKRLGLKG 507
Cdd:COG2203 669 DSSLLLGLLLLGALLLLGGGLA 690
|
|
| GAF_2 |
pfam13185 |
GAF domain; The GAF domain is named after some of the proteins it is found in, including ... |
25-158 |
1.54e-03 |
|
GAF domain; The GAF domain is named after some of the proteins it is found in, including cGMP-specific phosphodiesterases, adenylyl cyclases and FhlA. It is also found in guanylyl cyclases and phytochromes. The structure of a GAF domain shows that the domain shares a similar fold with the PAS domain. This domain can bind O2, CO and NO (Matilla et.al., FEMS Microbiology Reviews, fuab043, 45, 2021, 1. https://doi.org/10.1093/femsre/fuab043).
Pssm-ID: 433019 [Multi-domain] Cd Length: 137 Bit Score: 38.99 E-value: 1.54e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489004203 25 FSRLITTLRQILGCDASALLRYEAHQFvpLAIDGLAQDVLGRRFALE-GHPRLEAIARAGDVVRFpadSDLPDPYDGLIP 103
Cdd:pfam13185 8 LDAVLEAAVELGASAVGFILLVDDDGR--LAAWGGAADELSAALDDPpGEGLVGEALRTGRPVIV---NDLAADPAKKGL 82
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 489004203 104 GHESLKVHACVGLPLFAGQTLIGALTLDGMDADRFDSFSDEELRLIAALVAGALN 158
Cdd:pfam13185 83 PAGHAGLRSFLSVPLVSGGRVVGVLALGSNRPGAFDEEDLELLELLAEQAAIAIE 137
|
|
| MCM |
cd17706 |
MCM helicase family; MCM helicases are a family of helicases that play an important role in ... |
208-420 |
2.64e-03 |
|
MCM helicase family; MCM helicases are a family of helicases that play an important role in replication and homologous recombination repair. The heterohexameric ring-shaped Mcm2-7 complex is part of the replicative helicase that unwinds parental double-stranded DNA at a replication fork to provide single-stranded DNA templates for the replicative polymerases. Mcm8 and Mcm9, form a complex required for homologous recombination (HR) repair induced by DNA interstrand crosslinks (ICLs).
Pssm-ID: 350658 [Multi-domain] Cd Length: 311 Bit Score: 40.02 E-value: 2.64e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489004203 208 DLNVLISGETGTGKELVAKAVHQGSPRAanplVYLNCAALpesvAESELFGHV-KGAFTGAISNRSGKFEMADNGTLFLD 286
Cdd:cd17706 41 DIHILLVGDPGTAKSQILKYVLKIAPRG----VYTSGKGS----SGAGLTAAVvRDSETGEWYLEAGALVLADGGVCCID 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489004203 287 EIGELSLALQAKLLRVLQYGDIQ--RVGDDRSLRVDVRVLAATNRdlrqevVEGRF------------------RADLyh 346
Cdd:cd17706 113 EFDKMKELDRTALHEAMEQQTISiaKAGIVTTLNARCSILAAANP------KGGRYnpklspieninlpspllsRFDL-- 184
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489004203 347 rlsVFPLSVPPLRERESDVV--LLAGYFC------------------EQCRLRMGLARVI---LAEAARNRLQKW----- 398
Cdd:cd17706 185 ---IFVIRDDPDEERDEELAehIIDLHRGsdpeeqvkpeedgipidiELLRKYILYARQIhpkISEEAREKLVRWyvelr 261
|
250 260
....*....|....*....|....*....
gi 489004203 399 -------SWPGNVRELEHAIHRAVVLARA 420
Cdd:cd17706 262 keserrsTIPITARQLESVIRLAEAHAKM 290
|
|
| MCM6 |
cd17757 |
DNA replication licensing factor Mcm6; Mcm6 is a helicase that play an important role in ... |
207-438 |
4.81e-03 |
|
DNA replication licensing factor Mcm6; Mcm6 is a helicase that play an important role in replication. It is part of the heterohexameric ring-shaped Mcm2-7 complex, which is part of the replicative helicase that unwinds parental double-stranded DNA at a replication fork to provide single-stranded DNA templates for the replicative polymerases.
Pssm-ID: 350663 [Multi-domain] Cd Length: 307 Bit Score: 39.27 E-value: 4.81e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489004203 207 SDLNVLISGETGTGKELVAKAVHQGSPRAanplVYLN-----CAALPESVaeselfghVKGAFTGAISNRSGKFEMADNG 281
Cdd:cd17757 40 GDINVCIVGDPSTAKSQFLKYVEEFSPRA----VYTSgkassAAGLTAAV--------VRDEETGDFVIEAGALMLADNG 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489004203 282 TLFLDEIGELSLALQAKLLRVL--QYGDIQRVGDDRSLRVDVRVLAATN---------RDLRQEV-----VEGRFraDLY 345
Cdd:cd17757 108 ICCIDEFDKMDIKDQVAIHEAMeqQTISITKAGIQATLNARTSILAAANpvggrydrsKSLKQNInisapIMSRF--DLF 185
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489004203 346 ------------HRLSVFPLSVPPLRERESDVVLLAgyfcEQCRLRMGLAR----VILAEAARNRLQKW----------- 398
Cdd:cd17757 186 fvlldecnevtdYAIASHIVDLHSKREEAIEPPFTA----EQLKRYIAYARtfkpKLTKEAKDELVEQYkelrqddasgs 261
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 489004203 399 ---SWPGNVRELEHAIHRAVVLARAtQAGDEVvlEPQHFQFAV 438
Cdd:cd17757 262 trsSYRITVRQLESLIRLSEAIARL-HCSDEV--TPEHVEEAA 301
|
|
| AAA_5 |
pfam07728 |
AAA domain (dynein-related subfamily); This Pfam entry includes some of the AAA proteins not ... |
210-329 |
6.65e-03 |
|
AAA domain (dynein-related subfamily); This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Pssm-ID: 400191 [Multi-domain] Cd Length: 135 Bit Score: 36.89 E-value: 6.65e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489004203 210 NVLISGETGTGK----ELVAKAVHQGspraanPLVYLNCaalPESVAESELFG----------HVKGAFTGAIsnRSGKF 275
Cdd:pfam07728 1 GVLLVGPPGTGKtelaERLAAALSNR------PVFYVQL---TRDTTEEDLFGrrnidpggasWVDGPLVRAA--REGEI 69
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 489004203 276 emadngtLFLDEIGELSLALQAKLLRVLQYGDIQ---RVGDDRSLRVDVRVLAATNR 329
Cdd:pfam07728 70 -------AVLDEINRANPDVLNSLLSLLDERRLLlpdGGELVKAAPDGFRLIATMNP 119
|
|
| |
