|
Name |
Accession |
Description |
Interval |
E-value |
| PRK10561 |
PRK10561 |
sn-glycerol-3-phosphate ABC transporter permease UgpA; |
16-295 |
8.33e-170 |
|
sn-glycerol-3-phosphate ABC transporter permease UgpA;
Pssm-ID: 182550 [Multi-domain] Cd Length: 280 Bit Score: 471.23 E-value: 8.33e-170
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489010235 16 VLVAPQLIITLIFFIWPAGEALWYSLQSVDPFGLSSQFVGLDNFVALFHDPYYLDSFWTTIKFSALVTVSGLLISLFFAA 95
Cdd:PRK10561 1 LLVAPQLIITVIFFIWPAGEALWYSLQSVDPFGFSSQFVGLDNFVALFHDSYYLDSFWTTIKFSTLVTVSGLLVSLFFAA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489010235 96 LVDYVVRGSRFYQTLMLLPYAVAPAVAAVLWIFLFNPGRGLITHFLGELGYDWNHAQNSGQAMFLVVFASVWKQISYNFL 175
Cdd:PRK10561 81 LVDYVVRGSRFYQTLMLLPYAVAPAVAAVLWIFLFNPGRGLITHFLAEFGYDWNHAQNSGQAMFLVVFASVWKQISYNFL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489010235 176 FFFAALQSIPRSLVEAAAIDGAGPIRRFFKLALPLIAPVSFFLLVVNLVYAFFDTFPVIDAATAGGPVQATTTLIYKIYR 255
Cdd:PRK10561 161 FFFAALQSIPRSLVEAAAIDGAGPIRRFFKLALPLIAPVSFFLLVVNLVYAFFDTFPVIDAATSGGPVQATTTLIYKIYR 240
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 489010235 256 EGFAGLDLSASAAQSVVLMFLVIILTVVQFRYVESKVRYQ 295
Cdd:PRK10561 241 EGFTGLDLSSSAAQSVVLMFLVIVLTVVQFRYVESKVRYQ 280
|
|
| UgpA |
COG1175 |
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]; |
2-292 |
3.59e-84 |
|
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 440788 [Multi-domain] Cd Length: 298 Bit Score: 254.67 E-value: 3.59e-84
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489010235 2 SSSRPVFRSRWLPYVLVAPQLIITLIFFIWPAGEALWYSLQSVDPFGLSSQFVGLDNFVALFHDPYYLDSFWTTIKFSAL 81
Cdd:COG1175 8 AARRRRRRRRLAAYLFLLPALLLLLVFVLYPLLYTLYLSFTDWNLLGPPPEFVGLDNYARLFTDPRFWNALGNTLLFTVV 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489010235 82 VTVSGLLISLFFAALVDYVVRGSRFYQTLMLLPYAVAPAVAAVLWIFLFNPGRGLITHFLGELGYD-WNHAQNSGQAMFL 160
Cdd:COG1175 88 SVPLQLVLGLLLALLLNRKLRGRGFFRTLFFLPWVISPVVVALIWKWLFNPDYGLLNALLGALGLEpINWLGDPSLALPA 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489010235 161 VVFASVWKQISYNFLFFFAALQSIPRSLVEAAAIDGAGPIRRFFKLALPLIAPVSFFLLVVNLVYAfFDTFPVIDAATAG 240
Cdd:COG1175 168 VIIVTVWKGTGFNMLIFLAGLQSIPRELYEAARIDGASPWQRFRRITLPLLRPTILFVLVLSTIGA-LQVFDLVYVLTGG 246
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 489010235 241 GPVQATTTLIYKIYREGFAGLDLSASAAQSVVLMFLVIILTVVQFRYVESKV 292
Cdd:COG1175 247 GPGNSTTTLVLYIYQTAFQQFDFGYASAIAVVLFLIILVLTLLQLRLLRRRE 298
|
|
| BPD_transp_1 |
pfam00528 |
Binding-protein-dependent transport system inner membrane component; The alignments cover the ... |
148-294 |
1.01e-10 |
|
Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.
Pssm-ID: 334128 [Multi-domain] Cd Length: 183 Bit Score: 59.62 E-value: 1.01e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489010235 148 WNHAQNSGQAMFLVVFASVWKQISYNFLFFFAALQSIPRSLVEAAAIDGAGPIRRFFKLALPLIAPVSFFLLVVNLVYAF 227
Cdd:pfam00528 42 IAILSILGHGILPAIILALLGWAGYARLIRRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGAL 121
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 489010235 228 FDTFpVIDAATAGGPVQATTTLIYKIYREGFAgldlSASAAQSVVLMFLVIILTVVQFRYVESKVRY 294
Cdd:pfam00528 122 GGAV-LLEFLGSWPGLGLLLIEAILGYDYPEI----QGPVLAAALILLLLNLLVDILQRLLDPRVRK 183
|
|
| PhnU2 |
TIGR03262 |
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding ... |
52-209 |
3.91e-09 |
|
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 274495 [Multi-domain] Cd Length: 546 Bit Score: 57.00 E-value: 3.91e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489010235 52 QFVGLDNFVALFHDPYYLDSFWTTIKFSALVTVSGLLISLFFA-ALVDYVVRGSRFYQTLMLLPYAVAPAVAAVLWIFLF 130
Cdd:TIGR03262 36 DFIGLANFAEYFATPGLLQSLGNSLTVSAIVTAIVVPLAFAFAyALTRSRIPGKGAFRLVALLPLLAPSLLPAISLIYLF 115
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 489010235 131 NpGRGLITHFLGElgydwnhaqNSGQAMFLVVFASVWKQISYNFLFFFAALQSIPRSLVEAAAIDGAGPIRRFFKLALP 209
Cdd:TIGR03262 116 G-NQGLLKGLLGG---------FSIYGFWGIVIGEVFYTFPHALMILVTALSLADGRLYEAARAMGASPWRTFFTVTLP 184
|
|
| TM_PBP2 |
cd06261 |
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ... |
72-278 |
4.13e-09 |
|
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.
Pssm-ID: 119394 [Multi-domain] Cd Length: 190 Bit Score: 54.98 E-value: 4.13e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489010235 72 FWTTIKFSALVTVSGLLISLFFA-ALVDYVVRGSRFYQTLMLLPYAVAPAVAAVLWIFLFnpgrglithflgelGYDWNH 150
Cdd:cd06261 1 LLNTLLLALIATLLALVLGLLLGiILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLF--------------GVLLGW 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489010235 151 AQNSGQAMFLVVFASVWkQISYNFLFFFAALQSIPRSLVEAAAIDGAGPIRRFFKLALPLIAPVSFFLLVVNLVYAFFDT 230
Cdd:cd06261 67 GILPGLGLPALILALLL-IAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEF 145
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 489010235 231 FPVidaATAGGPVQATTTLIYKIYREGFAGLDLSASAAQSVVLMFLVI 278
Cdd:cd06261 146 ALV---SFLGGGEAPGPGTGLLLIFAILFPGDLGVAAAVALILLLLSL 190
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PRK10561 |
PRK10561 |
sn-glycerol-3-phosphate ABC transporter permease UgpA; |
16-295 |
8.33e-170 |
|
sn-glycerol-3-phosphate ABC transporter permease UgpA;
Pssm-ID: 182550 [Multi-domain] Cd Length: 280 Bit Score: 471.23 E-value: 8.33e-170
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489010235 16 VLVAPQLIITLIFFIWPAGEALWYSLQSVDPFGLSSQFVGLDNFVALFHDPYYLDSFWTTIKFSALVTVSGLLISLFFAA 95
Cdd:PRK10561 1 LLVAPQLIITVIFFIWPAGEALWYSLQSVDPFGFSSQFVGLDNFVALFHDSYYLDSFWTTIKFSTLVTVSGLLVSLFFAA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489010235 96 LVDYVVRGSRFYQTLMLLPYAVAPAVAAVLWIFLFNPGRGLITHFLGELGYDWNHAQNSGQAMFLVVFASVWKQISYNFL 175
Cdd:PRK10561 81 LVDYVVRGSRFYQTLMLLPYAVAPAVAAVLWIFLFNPGRGLITHFLAEFGYDWNHAQNSGQAMFLVVFASVWKQISYNFL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489010235 176 FFFAALQSIPRSLVEAAAIDGAGPIRRFFKLALPLIAPVSFFLLVVNLVYAFFDTFPVIDAATAGGPVQATTTLIYKIYR 255
Cdd:PRK10561 161 FFFAALQSIPRSLVEAAAIDGAGPIRRFFKLALPLIAPVSFFLLVVNLVYAFFDTFPVIDAATSGGPVQATTTLIYKIYR 240
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 489010235 256 EGFAGLDLSASAAQSVVLMFLVIILTVVQFRYVESKVRYQ 295
Cdd:PRK10561 241 EGFTGLDLSSSAAQSVVLMFLVIVLTVVQFRYVESKVRYQ 280
|
|
| UgpA |
COG1175 |
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]; |
2-292 |
3.59e-84 |
|
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 440788 [Multi-domain] Cd Length: 298 Bit Score: 254.67 E-value: 3.59e-84
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489010235 2 SSSRPVFRSRWLPYVLVAPQLIITLIFFIWPAGEALWYSLQSVDPFGLSSQFVGLDNFVALFHDPYYLDSFWTTIKFSAL 81
Cdd:COG1175 8 AARRRRRRRRLAAYLFLLPALLLLLVFVLYPLLYTLYLSFTDWNLLGPPPEFVGLDNYARLFTDPRFWNALGNTLLFTVV 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489010235 82 VTVSGLLISLFFAALVDYVVRGSRFYQTLMLLPYAVAPAVAAVLWIFLFNPGRGLITHFLGELGYD-WNHAQNSGQAMFL 160
Cdd:COG1175 88 SVPLQLVLGLLLALLLNRKLRGRGFFRTLFFLPWVISPVVVALIWKWLFNPDYGLLNALLGALGLEpINWLGDPSLALPA 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489010235 161 VVFASVWKQISYNFLFFFAALQSIPRSLVEAAAIDGAGPIRRFFKLALPLIAPVSFFLLVVNLVYAfFDTFPVIDAATAG 240
Cdd:COG1175 168 VIIVTVWKGTGFNMLIFLAGLQSIPRELYEAARIDGASPWQRFRRITLPLLRPTILFVLVLSTIGA-LQVFDLVYVLTGG 246
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 489010235 241 GPVQATTTLIYKIYREGFAGLDLSASAAQSVVLMFLVIILTVVQFRYVESKV 292
Cdd:COG1175 247 GPGNSTTTLVLYIYQTAFQQFDFGYASAIAVVLFLIILVLTLLQLRLLRRRE 298
|
|
| LplB |
COG4209 |
ABC-type polysaccharide transport system, permease component [Carbohydrate transport and ... |
9-279 |
2.46e-33 |
|
ABC-type polysaccharide transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 443357 [Multi-domain] Cd Length: 316 Bit Score: 124.05 E-value: 2.46e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489010235 9 RSRWLpYVLVAPQLIITLIFFIWP-AGeaLWYSLQSVDPFG--LSSQFVGLDNFVALFHDPYYLDSFWTTIKFSALVTVS 85
Cdd:COG4209 25 RDWQL-YLMLLPGLIYLLIFSYLPmYG--IVIAFKDYNPFKgiFGSPWVGLKNFKFLFSSPDFWRVLRNTLLISLLKLVF 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489010235 86 GLLISLFFAALVDYV--VRGSRFYQTLMLLPYAVAPAVAAVLWIFLFNPGRGLITHFLGELGYD-WNHAQNSGQAMFLVV 162
Cdd:COG4209 102 GFPLPIILALLLNELrsKRFKKTVQTISYLPHFLSWVVVAGIVYQFLSPDTGLVNQLLRALGGEpINFLTEPKYFRPIYV 181
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489010235 163 FASVWKQISYNFLFFFAALQSIPRSLVEAAAIDGAGPIRRFFKLALPLIAPVSFFLLVVNL---VYAFFDTFPVIDAata 239
Cdd:COG4209 182 FSGIWKEAGWGSIIYLAAITGIDPELYEAAAIDGAGRWQQIWHITLPGIRPTIVILLILNIgniLNVGFEQIYLLYN--- 258
|
250 260 270 280
....*....|....*....|....*....|....*....|....*.
gi 489010235 240 gGPVQATTTLI--YkIYREGFAGLDLSASAA----QSVVLMFLVII 279
Cdd:COG4209 259 -PLNYSTSDVIdtY-VYRIGLQNGDYSYATAvglfKSVVGLILVLI 302
|
|
| PotB |
COG1176 |
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport ... |
5-288 |
2.23e-31 |
|
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism];
Pssm-ID: 440789 [Multi-domain] Cd Length: 287 Bit Score: 118.33 E-value: 2.23e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489010235 5 RPVFRSRWLPYVLVAPQLIITLIFFIWPAGEALWYSLQSVDPFGLSSQFVGLDNFVALFHDPYYLDSFWTTIKFSALVTV 84
Cdd:COG1176 2 SAALRRRLRPLLLLLPALLWLLLFFVLPLLLLLVYSFTTRDPYGGVVPGFTLENYARLFTDPLYLKVLLRTLWIALLTTL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489010235 85 SGLLISLFFAAlvdYVVRGSRFYQTLML----LPYAVAPAVAAVLWIFLFNPGrGLITHFLGELGYdWNHAQNSGQAMFL 160
Cdd:COG1176 82 ICLLLGYPIAY---FLARAPPRWRNLLLllviLPFWTSFLVRTYAWIVLLGRN-GLLNSLLLALGL-IDEPLRLLYTEFA 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489010235 161 VVFASVWKQISYNFLFFFAALQSIPRSLVEAAAIDGAGPIRRFFKLALPLIAP--VSFFLLVVNLVYAFFDTfPVIdaat 238
Cdd:COG1176 157 VVIGLVYVYLPFMVLPLYAALEKIDPSLLEAARDLGASPWQTFRRVILPLSLPgiIAGSLLVFIPALGAFVT-PAL---- 231
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|
gi 489010235 239 AGGPvqATTTLIYKIYREGFAGLDLSASAAQSVVLMFLVIILTVVQFRYV 288
Cdd:COG1176 232 LGGG--KVLMIGNLIYQQFLSALNWPLAAALAVVLLLIVLLVLLLYLRLL 279
|
|
| FbpB |
COG1178 |
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism]; |
9-291 |
1.17e-23 |
|
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
Pssm-ID: 440791 [Multi-domain] Cd Length: 538 Bit Score: 100.24 E-value: 1.17e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489010235 9 RSRWLPYVLVAPQLIITLIFFIWPAGEALWYSLQsvdpfglssqfVGLDNFVALFHDPYYLDSFWTTIKFSALVTVSGLL 88
Cdd:COG1178 4 RPRRRPRLLLLLLALLLALLVLLPLLALLLRAFT-----------DGLANFWALLSDPYLWRALGNTLLLALLVTLLSLL 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489010235 89 ISLFFAALVD-YVVRGSRFYQTLMLLPYAVAPAVAAVLWIFLFNPgRGLITHFLGELGyDWNHAQNSGqaMFLVVFASVW 167
Cdd:COG1178 73 LGVPLAWLLArTDFPGRRLLRWLLLLPLALPPYVVALAWIALFGP-NGLLNTLLRALF-GLEPPDIYG--LGGIILVLVL 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489010235 168 KQISYNFLFFFAALQSIPRSLVEAAAIDGAGPIRRFFKLALPLIAPVSFFLLVVNLVYAFFDtFPVidAATAGGPVqatT 247
Cdd:COG1178 149 FNYPYVYLLLRAALRSIDASLEEAARSLGASPWRAFRRVTLPLLRPAIAAGALLVFLLCLAD-FGT--PLVLGGGY---T 222
|
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 489010235 248 TLIYKIYREGFAGLDLSASAAQSVVLMFLVIILTVVQFRYVESK 291
Cdd:COG1178 223 TLTTAIYQAWLGDFDLGAAAALALVLLLLVLLLLLLERRLRRRR 266
|
|
| malF |
PRK10999 |
maltose ABC transporter permease MalF; |
53-286 |
2.27e-18 |
|
maltose ABC transporter permease MalF;
Pssm-ID: 236816 [Multi-domain] Cd Length: 520 Bit Score: 85.01 E-value: 2.27e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489010235 53 FVGLDNFVALFHDPY----YLDSFWTTIKFSALVTVSGLLISLFFAALVDY-VVRGSRFYQTLMLLPYAVAPAVAAVLWI 127
Cdd:PRK10999 264 TIGWKNFTRVFTDEGiqkpFIAIFIWTVVFSLLTVVLTVAVGMVLACLVQWeALKGKAVYRVLLILPYAVPSFISILIFK 343
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489010235 128 FLFNPGRGLITHFLGEL---GYDWNHAQNSGQAMFLVVfaSVWKQISYNFLFFFAALQSIPRSLVEAAAIDGAGPIRRFF 204
Cdd:PRK10999 344 GLFNQSFGEINMMLSALfgiKPAWFSDPTLAKTMILIV--NTWLGYPYMMILCMGLLKAIPDDLYEASAMDGAGPFQNFF 421
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489010235 205 KLALPLIAPVSFFLLVVNlvYAF-FDTFPVIDAATAGGP--VQATT---------TLIYKIYREGFAGLDLSASAAQSVV 272
Cdd:PRK10999 422 KITLPLLIKPLTPLMIAS--FAFnFNNFVLIQLLTNGGPdmIGTTTpagytdllvSYTYRIAFEGGGGQDFGLAAAIATL 499
|
250
....*....|....
gi 489010235 273 LMFLVIILTVVQFR 286
Cdd:PRK10999 500 IFLLVGALAILNLK 513
|
|
| PotC |
COG1177 |
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ... |
22-293 |
4.35e-14 |
|
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];
Pssm-ID: 440790 [Multi-domain] Cd Length: 262 Bit Score: 70.53 E-value: 4.35e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489010235 22 LIITLIFFIWPAGEALWYSLQSVDPFGLSSQFVGLDNFVALFHDPYYLDSFWTTIKFSALVTVSGLLISLFFA-ALVDYV 100
Cdd:COG1177 13 LALVLLFLYLPILVLVLYSFNDSWFLTFPPEGFTLRWYAELFSDPRLLDALLNSLLIALLSTLLATVLGTPAAlALARYR 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489010235 101 VRGSRFYQTLMLLPyavapavaavlwifLFNP----GRGLIThFLGELGYdwnhaqnsGQAMFLVVFASVWKQISYNFLF 176
Cdd:COG1177 93 FRGRRLLLALLLLP--------------LVVPgivlGVALLL-LFSALGL--------SGGLWGLILAHVVFTLPFVVLV 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489010235 177 FFAALQSIPRSLVEAAAIDGAGPIRRFFKLALPLIAP--VSFFLLVV-----NLVYAFFdtfpvidaaTAGGpvqATTTL 249
Cdd:COG1177 150 VLARLQGFDPSLEEAARDLGASPWQTFRRVTLPLIAPgiLAGALLAFtlsfdEFVITLF---------LAGP---GVTTL 217
|
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 489010235 250 IYKIYREGFAGLDLSASAAqSVVLMFLVIILTVVQFRYVESKVR 293
Cdd:COG1177 218 PVYIYSMIRRGISPEINAL-STLLILLSLLLLLLAERLRRRGER 260
|
|
| FbpB |
COG1178 |
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism]; |
9-291 |
2.46e-12 |
|
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
Pssm-ID: 440791 [Multi-domain] Cd Length: 538 Bit Score: 66.72 E-value: 2.46e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489010235 9 RSRWLPYVLVApqlIITLIFFIWPAGEALWYSLQSVDPFGLSsqfvgLDNFVALFHDPYYLDSFWTTIKFSALVTVSGLL 88
Cdd:COG1178 285 RWRWLALALCL---LLVLLGLLLPLLALLLWSLTKALDDNLT-----LDNYRFVLLDPSLLRALLNSLLLALLAALLAVL 356
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489010235 89 ISLFFA-ALVDYVVRGSRFYQTLMLLPYAVAPAVAAVLWIFLFNPGRGLITHflgelgydwnhaqnsgQAMFLVVFASVW 167
Cdd:COG1178 357 LALLLAyLVRRRRGRLARLLDRLAMLPYAVPGIVLGLGLLLLFNRPLPLLLY----------------GTLAILVLAYVV 420
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489010235 168 KQISYNFLFFFAALQSIPRSLVEAAAIDGAGPIRRFFKLALPLIAPVsfflLVVNLVYAFFDTFPVIDAATAGGPvQATT 247
Cdd:COG1178 421 RFLPFALRSLEAALAQIDPSLEEAARSLGASPLRTLRRVTLPLLRPG----LLAAALLVFVTSMKELSATLLLRP-PGFE 495
|
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 489010235 248 TLIYKIYREgFAGLDLSASAAQSVVLMFLVIILTVVQFRYVESK 291
Cdd:COG1178 496 TLAVLIYQL-ASSGRYGEAAALALLLVLVSLLPVLLLERLLGRR 538
|
|
| UgpE |
COG0395 |
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and ... |
1-214 |
5.81e-12 |
|
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 440164 [Multi-domain] Cd Length: 282 Bit Score: 64.73 E-value: 5.81e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489010235 1 MSSSRPVFR---SRWLPYVLVAPQLIITLIFFIW-------PAGEALwyslqSVDPFGLSSQFvGLDNFVALFHDPYYLD 70
Cdd:COG0395 1 MSATARRRRrrlGRILLYLLLILLALLFLFPLYWmvvtsfkPPAEIF-----SGPPSLLPSEF-TLENYRAAFTDGPFGR 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489010235 71 SFWTTIKFSALVTVSGLLISLFFA-ALVDYVVRGSRFYQTLMLLpyavapavaavlwIFLFNPGRGLITHFLGELGYDWn 149
Cdd:COG0395 75 YLLNSLIVAVVSTVLSLLLSSLAAyALARFRFRGRKLLFLLILA-------------TLMIPGQVLLIPLYLLFRQLGL- 140
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 489010235 150 haQNSGQAMFLVVFASvwkQISYNFLFFFAALQSIPRSLVEAAAIDGAGPIRRFFKLALPLIAPV 214
Cdd:COG0395 141 --LNTYWGLILPYLAF---GLPFGIFLLRQFFRSIPRELEEAARIDGASEFRIFWRIVLPLSKPA 200
|
|
| BPD_transp_1 |
pfam00528 |
Binding-protein-dependent transport system inner membrane component; The alignments cover the ... |
148-294 |
1.01e-10 |
|
Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.
Pssm-ID: 334128 [Multi-domain] Cd Length: 183 Bit Score: 59.62 E-value: 1.01e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489010235 148 WNHAQNSGQAMFLVVFASVWKQISYNFLFFFAALQSIPRSLVEAAAIDGAGPIRRFFKLALPLIAPVSFFLLVVNLVYAF 227
Cdd:pfam00528 42 IAILSILGHGILPAIILALLGWAGYARLIRRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGAL 121
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 489010235 228 FDTFpVIDAATAGGPVQATTTLIYKIYREGFAgldlSASAAQSVVLMFLVIILTVVQFRYVESKVRY 294
Cdd:pfam00528 122 GGAV-LLEFLGSWPGLGLLLIEAILGYDYPEI----QGPVLAAALILLLLNLLVDILQRLLDPRVRK 183
|
|
| PhnU2 |
TIGR03262 |
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding ... |
52-209 |
3.91e-09 |
|
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 274495 [Multi-domain] Cd Length: 546 Bit Score: 57.00 E-value: 3.91e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489010235 52 QFVGLDNFVALFHDPYYLDSFWTTIKFSALVTVSGLLISLFFA-ALVDYVVRGSRFYQTLMLLPYAVAPAVAAVLWIFLF 130
Cdd:TIGR03262 36 DFIGLANFAEYFATPGLLQSLGNSLTVSAIVTAIVVPLAFAFAyALTRSRIPGKGAFRLVALLPLLAPSLLPAISLIYLF 115
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 489010235 131 NpGRGLITHFLGElgydwnhaqNSGQAMFLVVFASVWKQISYNFLFFFAALQSIPRSLVEAAAIDGAGPIRRFFKLALP 209
Cdd:TIGR03262 116 G-NQGLLKGLLGG---------FSIYGFWGIVIGEVFYTFPHALMILVTALSLADGRLYEAARAMGASPWRTFFTVTLP 184
|
|
| TM_PBP2 |
cd06261 |
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ... |
72-278 |
4.13e-09 |
|
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.
Pssm-ID: 119394 [Multi-domain] Cd Length: 190 Bit Score: 54.98 E-value: 4.13e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489010235 72 FWTTIKFSALVTVSGLLISLFFA-ALVDYVVRGSRFYQTLMLLPYAVAPAVAAVLWIFLFnpgrglithflgelGYDWNH 150
Cdd:cd06261 1 LLNTLLLALIATLLALVLGLLLGiILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLF--------------GVLLGW 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489010235 151 AQNSGQAMFLVVFASVWkQISYNFLFFFAALQSIPRSLVEAAAIDGAGPIRRFFKLALPLIAPVSFFLLVVNLVYAFFDT 230
Cdd:cd06261 67 GILPGLGLPALILALLL-IAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEF 145
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 489010235 231 FPVidaATAGGPVQATTTLIYKIYREGFAGLDLSASAAQSVVLMFLVI 278
Cdd:cd06261 146 ALV---SFLGGGEAPGPGTGLLLIFAILFPGDLGVAAAVALILLLLSL 190
|
|
| MalG |
COG3833 |
ABC-type maltose transport system, permease component MalG [Carbohydrate transport and ... |
1-227 |
5.14e-07 |
|
ABC-type maltose transport system, permease component MalG [Carbohydrate transport and metabolism];
Pssm-ID: 443045 [Multi-domain] Cd Length: 282 Bit Score: 50.15 E-value: 5.14e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489010235 1 MSSSRPVFRSRWLPYVLVAPQLIITLIFFIWPAgeaLWYSLQSVDPFG-LSSQF-----VGLDNFVALFHDPYYLDSFWT 74
Cdd:COG3833 1 MSRRKSRKRRRRLKLGLRHLVLIILAIIALFPI---LWVVSASFNPGGsLYSSSlipenFTLENYKKLFTETPFLRWFLN 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489010235 75 TIKFSALVTVsgllISLFFAALVDYVVrgSRF----YQTLMLLPYAVAPAVAAVLWIFLFnpgrgLITHFLGELgydwnh 150
Cdd:COG3833 78 SLIVAVVTAI----ISVFLAALAAYAF--SRFrfkgRKAGLLALLLLQMFPAFLALVALY-----LLLSALGLL------ 140
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 489010235 151 aqNSGQAMFLVVFASvwkQISYNFLFFFAALQSIPRSLVEAAAIDGAGPIRRFFKLALPLIAPVsfflLVVNLVYAF 227
Cdd:COG3833 141 --NTLLGLILVYLGG---AIPFNTWLMKGYFDTIPKELDEAAKIDGASHFQIFFRIILPLAKPI----LAVVALLSF 208
|
|
| PRK15050 |
PRK15050 |
2-aminoethylphosphonate transport system permease PhnU; Provisional |
9-276 |
1.13e-05 |
|
2-aminoethylphosphonate transport system permease PhnU; Provisional
Pssm-ID: 237888 [Multi-domain] Cd Length: 296 Bit Score: 46.15 E-value: 1.13e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489010235 9 RSRWLPYVLVAPQLIITLIFFIWPAGEALWYSLQSVDPfglssqfVGLDNFVALFHDPYYLDSFWTTIKFSALVTVSGLL 88
Cdd:PRK15050 19 RRRLRPLLWLLLPLLVLAPLVVYPLVRVVLQSLTGEHG-------LGLATYRAVLGSPDFRGALLTTLQIAFASTAGCLV 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489010235 89 ISLFFAALVDYV-VRGS----RFYQTLMLLPYAVAPAVAavlwIFLFNPgRGLITHFLGELGYDWNHAQNSGQAMFLVVF 163
Cdd:PRK15050 92 LGVLLALVLAFVpFPGAslvgRFIDTFVAFPSFLITLAF----TFLYGS-AGSVNIALQRLFGLEAPPLDFLYSPGGVIL 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489010235 164 AsvwkQISYNFLF----FFAALQSIPRSLVEAAAIDGAGPIRRFFKLALPLIAPVSF------FLLVVNLvyafFDTFPV 233
Cdd:PRK15050 167 A----EITFYTPFvvrpLLAAFAQLDARQLEAAASLGASPWRVARRVILPEAWPALAaggslcLLLTLNE----FGIVLF 238
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 489010235 234 IDAATaggpvqaTTTLIYKIYREGFAGLDLSASAAQSVVLMFL 276
Cdd:PRK15050 239 TGAKD-------VVTLPVLIYSKAIVDFDYPTACAIAVVNLAL 274
|
|
| CysU |
COG0555 |
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]; ... |
22-213 |
6.37e-04 |
|
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism];
Pssm-ID: 440321 [Multi-domain] Cd Length: 268 Bit Score: 40.50 E-value: 6.37e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489010235 22 LIITLIFFIWPAGEALWYSLQsvdpfglssqfVGLDNFVALFHDPYYLDSFWTTIKFSALVTVSGLLISLFFA-ALVDYV 100
Cdd:COG0555 17 LLYLSLIVLLPLAALVLKAAG-----------LGWAEFWAVLTSPRVLAALKLSLGTALIAALINLVFGLPLAwVLVRYR 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489010235 101 VRGSRFYQTLMLLPYAVAPAVAAVLWIFLFNPgRGLITHFLGELGYDWNHAQNSgqamflVVFAsvwkqisynfLFFFA- 179
Cdd:COG0555 86 FPGKRLVDALVDLPFALPTAVAGIALLLLFGP-NGWLGQLLAPLGIKVAFTPLG------IVLA----------QTFVSl 148
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 489010235 180 ---------ALQSIPRSLVEAAAIDGAGPIRRFFKLALPLIAP 213
Cdd:COG0555 149 pfvvrtvqpVLEELDPELEEAAATLGASRWQTFRRVILPLLLP 191
|
|
| PRK10683 |
PRK10683 |
putrescine transporter subunit: membrane component of ABC superfamily; Provisional |
56-210 |
1.21e-03 |
|
putrescine transporter subunit: membrane component of ABC superfamily; Provisional
Pssm-ID: 182646 Cd Length: 317 Bit Score: 39.69 E-value: 1.21e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489010235 56 LDNFVALFHDPYYLDSFWTTIKFSALVTVSGLLISLFFAALVDYVVRGSR-FYQTLMLLPYAVAPAVAAVLWIFLFNpGR 134
Cdd:PRK10683 83 LGNFLQLTDDPLYFDAYLQSLQVAAISTLCCLLIGYPLAWAVAHSKPSTRnILLLLVILPSWTSFLIRVYAWMGILK-NN 161
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 489010235 135 GLITHFLGELGYdWNHAQNSGQAMFLVVFASVWKQISYNFLFFFAALQSIPRSLVEAAAIDGAGPIRRFFKLALPL 210
Cdd:PRK10683 162 GVLNNFLLWLGV-IDQPLTILHTNLAVYIGIVYAYLPFMVLPIYTALTRIDYSLVEAALDLGARPLKTFFSVIVPL 236
|
|
| PRK10973 |
PRK10973 |
sn-glycerol-3-phosphate ABC transporter permease UgpE; |
174-225 |
4.45e-03 |
|
sn-glycerol-3-phosphate ABC transporter permease UgpE;
Pssm-ID: 182875 [Multi-domain] Cd Length: 281 Bit Score: 38.18 E-value: 4.45e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....
gi 489010235 174 FLF--FFAALqsiPRSLVEAAAIDGAGPIRRFFKLALPLIAPVSFFLLVVNLVY 225
Cdd:PRK10973 160 FLFrqFFMTL---PDELVEAARIDGASPMRFFWDIVLPLSKTNLAALFVITFIY 210
|
|
| |
