|
Name |
Accession |
Description |
Interval |
E-value |
| XylH |
COG4214 |
ABC-type xylose transport system, permease component [Carbohydrate transport and metabolism]; |
7-393 |
4.01e-159 |
|
ABC-type xylose transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 443360 [Multi-domain] Cd Length: 393 Bit Score: 452.65 E-value: 4.01e-159
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489011810 7 SEIKLTPTAPAALPALKGLNLQVFVMIAAIVVIMLFFTWVTDGAYLSARNISNLLRQTAITGILAVGMVFVIISAEIDLS 86
Cdd:COG4214 2 STTAAPGGAVRSLRRLLGGDLRSLGMIIALVVIWIVFQILTGGTFLTPRNLSNLLLQNSYIGILAIGMVLVILLGHIDLS 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489011810 87 VGSMMGLLGGAAAIFDVWLGWPLPLTILVTLVMGLLLGAWNGWWVAYRKVPSFIVTLAGMLAFRGILIGITNGTTVSPTS 166
Cdd:COG4214 82 VGSVSGFVGAVAAVLMVNWGLPWWLAILAALLVGALIGAWQGFWVAYVGIPSFIVTLAGMLAFRGLTLLVLGGGTIAPFD 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489011810 167 PAMSQIGQSYLPDGIGFG---IGVVGMAVFIVWQWRGRMRRQALGLATSSSTAAVGRQAITAVIVLGAIWLLNDYRGVPT 243
Cdd:COG4214 162 PTFQAIGNGFLPDILGTLswvLGAVAVAAYVALQLRSRRRRRRYGLPVEPLWLFVLKLALLAVLILGAVYLLNSYRGIPI 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489011810 244 PVLILAALLLAGLFMATRTAFGRRIYAIGGNLEAARLSGINVERTKLAVFAINGLMVAIAGLILSSRLGAGSPSAGNIAE 323
Cdd:COG4214 242 VVLILLVLVVVYTFVLTRTVFGRHIYAVGGNPEAARLSGINVRRVTFSVFVNMGVLAALAGIVFAARLNSATPSAGTGFE 321
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489011810 324 LDAIAACVIGGTSLAGGIGSVAGAVMGAFIMSALDNGMSMMDVATFWQYIVKGAILLLAVWMDSATKRRA 393
Cdd:COG4214 322 LDAIAAAVIGGTSLFGGVGTVYGAVIGALVMGSLNNGMSLLGVDSDWQQIVKGLVLLLAVAFDVLSRRRR 391
|
|
| GguB |
NF040906 |
sugar ABC transporter permease; |
26-392 |
8.22e-119 |
|
sugar ABC transporter permease;
Pssm-ID: 468841 [Multi-domain] Cd Length: 375 Bit Score: 349.45 E-value: 8.22e-119
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489011810 26 NLQVFVMIAAIVVIMLFFTWVTDGAYLSARNISNLLRQTAITGILAVGMVFVIISAEIDLSVGSMMGLLGGAAAIFDVWL 105
Cdd:NF040906 1 NLRQYGMLIALVAIVVLFQILTGGILLRPLNVTNLILQNSYILILAIGMLLVIIAGHIDLSVGSVVAFVGAVAAVLMVNW 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489011810 106 GWPLPLTILVTLVMGLLLGAWNGWWVAYRKVPSFIVTLAGMLAFRGILIGITNGTTVSPTSPAMSQIGQSYLPDGIGFGI 185
Cdd:NF040906 81 GMPWWLAVLLCLLVGALIGAWQGFWVAYVGIPAFIVTLAGMLVFRGLTLVVLGGQSIGPFPDGFQKISSGFLPDLFGGTG 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489011810 186 G--------VVGMAVFIVWQWRGRMRRQALGLATSSSTAAVGRQAITAVIVLGAIWLLNDYRGVPTPVLILAALLLAGLF 257
Cdd:NF040906 161 LhlltlllgVLAAAALVWSQLRGRRRRIKYGLEVEPMALFIAKLVLIAAAILFFTYLLASYRGLPNVLIILGVLILVYSF 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489011810 258 MATRTAFGRRIYAIGGNLEAARLSGINVERTKLAVFAINGLMVAIAGLILSSRLGAGSPSAGNIAELDAIAACVIGGTSL 337
Cdd:NF040906 241 VTNRTVIGRHIYAVGGNEKAAKLSGIKTKRVTFLVFVNMGVLAALAGLVFAARLNSATPKAGNGFELDAIAACFIGGASA 320
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*
gi 489011810 338 AGGIGSVAGAVMGAFIMSALDNGMSMMDVATFWQYIVKGAILLLAVWMDSATKRR 392
Cdd:NF040906 321 SGGVGTVVGAIIGALVMGVLNNGMSILGIGIDWQQVIKGLVLLAAVAFDVYNKRK 375
|
|
| TM_PBP1_transp_AraH_like |
cd06579 |
Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the ... |
64-386 |
4.07e-74 |
|
Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the TM of a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of the monosaccharide arabinose. This group also contains E. coli RbsC, AlsC, and MglC, which are TMs of other monosaccharide transporters, the ribose transporter, the D-allose transporter and the galactose transporter, respectively. The D-allose transporter may also be involved in low affinity ribose transport. These transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. Proteins in this subgroup have a single TM which homodimerizes to generate the transmembrane pore.
Pssm-ID: 119321 [Multi-domain] Cd Length: 263 Bit Score: 231.53 E-value: 4.07e-74
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489011810 64 TAITGILAVGMVFVIISAEIDLSVGSMMGLLGGAAAIFDVWLGWPLPLTILVTLVMGLLLGAWNGWWVAYRKVPSFIVTL 143
Cdd:cd06579 1 AAVLGILALGMTLVIITGGIDLSVGSVAALSAVVAALLLVNAGLPIPLAILAALAVGALIGLLNGLLVAYLRIPPFIVTL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489011810 144 AGMLAFRGILIGITNGTTVSPTSPAMSQIGQSYLpdgigfgigvvgmavfivwqwrgrmrrqalglatssstaavgrqai 223
Cdd:cd06579 81 GTMFILRGLALLITGGRPISGLPPLFSFFLGGGL---------------------------------------------- 114
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489011810 224 tavivlgaiwllndYRGVPTPVLILAALLLAGLFMATRTAFGRRIYAIGGNLEAARLSGINVERTKLAVFAINGLMVAIA 303
Cdd:cd06579 115 --------------ILGIPVPVLIALAVALVAWFLLRRTRFGRYLYAVGGNPEAARLSGINVRRVKILAYVLSGLLAGLA 180
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489011810 304 GLILSSRLGAGSPSAGNIAELDAIAACVIGGTSLAGGIGSVAGAVMGAFIMSALDNGMSMMDVATFWQYIVKGAILLLAV 383
Cdd:cd06579 181 GILLAARLGSAQPTAGNGYELDAIAAVVLGGTSLTGGRGSVLGTLLGALLLGVLNNGLNLLGVSSFWQQIVKGAILLLAV 260
|
...
gi 489011810 384 WMD 386
Cdd:cd06579 261 ALD 263
|
|
| rbsC |
PRK09512 |
ribose ABC transporter permease protein; Reviewed |
51-390 |
3.77e-59 |
|
ribose ABC transporter permease protein; Reviewed
Pssm-ID: 181922 [Multi-domain] Cd Length: 320 Bit Score: 194.94 E-value: 3.77e-59
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489011810 51 YLSARNISNLLRQTAITGILAVGMVFVIISAEIDLSVGSMMGLLGGAAAIFdVWLGWPLPLTILVTLVMGLLLGAWNGWW 130
Cdd:PRK09512 39 FFTVNNLFNILQQTSVNAIMAVGMTLVILTSGIDLSVGSLLALTGAVAASI-VGIEVNALVAVPAALALGAAIGAVTGVI 117
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489011810 131 VAYRKVPSFIVTLAGMLAFRGILIGITNGttvSPTSPAMSQIGQSYlpdgigfgigvvgmavfiVWQWRGRMRrqalgla 210
Cdd:PRK09512 118 VAKGKVQAFIATLVMMLLLRGVTMVYTDG---SPINTGFTDNADLF------------------GWFGIGRPL------- 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489011810 211 tssstaavgrqaitavivlgaiwllndyrGVPTPVLILAALLLAGLFMATRTAFGRRIYAIGGNLEAARLSGINVERTKL 290
Cdd:PRK09512 170 -----------------------------GIPTPVWIMAIVFLAAWYMLHHTRLGRYIYALGGNEAATRLSGINVNKVKI 220
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489011810 291 AVFAINGLMVAIAGLILSSRLGAGSPSAGNIAELDAIAACVIGGTSLAGGIGSVAGAVMGAFIMSALDNGMSMMDVATFW 370
Cdd:PRK09512 221 IVYALCGLLAALAGIIEVARLSSAQPTAGTGYELDAIAAVVLGGTSLAGGKGRIVGTLIGALILGFLNNGLNLLGVSSYY 300
|
330 340
....*....|....*....|
gi 489011810 371 QYIVKGAILLLAVWMDSATK 390
Cdd:PRK09512 301 QMIVKAVVILLAVLVDNKKQ 320
|
|
| BPD_transp_2 |
pfam02653 |
Branched-chain amino acid transport system / permease component; This is a large family mainly ... |
56-383 |
8.02e-23 |
|
Branched-chain amino acid transport system / permease component; This is a large family mainly comprising high-affinity branched-chain amino acid transporter proteins such as E. coli LivH and LivM, both of which are form the LIV-I transport system. Also found with in this family are proteins from the galactose transport system permease and a ribose transport system.
Pssm-ID: 396977 [Multi-domain] Cd Length: 269 Bit Score: 96.56 E-value: 8.02e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489011810 56 NISNLLRQTAITGILAVGMVFVI-ISAEIDLSVGSMMGLLGGAAAIFDVWLGWPLPLTILVTLVMGLLLGAWNGWWVAYR 134
Cdd:pfam02653 1 NILNILTLASIYAIAALGLTLIYgIAGVINLGHGGFMMLGAYVAAMLLNLLGPGLWLALPVGILVGAAVGLLIGILTLRL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489011810 135 KVPSFIVTLAGMLAFRGILIGITNGTTVSPTSPAMSQIGqsylpdgigfgigvvgmavfivwqwrgrmrrqALGLATSSS 214
Cdd:pfam02653 81 KINEVIITLLLNLAALGLALFLVTGILGGEGGTSGITGP--------------------------------SGFPGAFLS 128
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489011810 215 TAAVGRQAITAVIVLGAIWLLndyrgvptpvlilaalllaglfmaTRTAFGRRIYAIGGNLEAARLSGINVERTKLAVFA 294
Cdd:pfam02653 129 FAFAFIFLLALLLVLALWLLL------------------------YRTKFGRALRAVGENEEAARAAGINVKKLKLLTFV 184
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489011810 295 INGLMVAIAGLILSSRLGAGSPS-AGNIAELDAIAACVIggtslaGGIGSVAGAVMGAFIMSALDNGMSMM-DVATFWQY 372
Cdd:pfam02653 185 ISGALAGLAGALLALYTGVVPPSnFGVGLGLDAIAAVVL------GGAGSPIGVVIGSLIIGLVQSLGLGAlGSPPELSL 258
|
330
....*....|.
gi 489011810 373 IVKGAILLLAV 383
Cdd:pfam02653 259 LVLGALLILVL 269
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| XylH |
COG4214 |
ABC-type xylose transport system, permease component [Carbohydrate transport and metabolism]; |
7-393 |
4.01e-159 |
|
ABC-type xylose transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 443360 [Multi-domain] Cd Length: 393 Bit Score: 452.65 E-value: 4.01e-159
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489011810 7 SEIKLTPTAPAALPALKGLNLQVFVMIAAIVVIMLFFTWVTDGAYLSARNISNLLRQTAITGILAVGMVFVIISAEIDLS 86
Cdd:COG4214 2 STTAAPGGAVRSLRRLLGGDLRSLGMIIALVVIWIVFQILTGGTFLTPRNLSNLLLQNSYIGILAIGMVLVILLGHIDLS 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489011810 87 VGSMMGLLGGAAAIFDVWLGWPLPLTILVTLVMGLLLGAWNGWWVAYRKVPSFIVTLAGMLAFRGILIGITNGTTVSPTS 166
Cdd:COG4214 82 VGSVSGFVGAVAAVLMVNWGLPWWLAILAALLVGALIGAWQGFWVAYVGIPSFIVTLAGMLAFRGLTLLVLGGGTIAPFD 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489011810 167 PAMSQIGQSYLPDGIGFG---IGVVGMAVFIVWQWRGRMRRQALGLATSSSTAAVGRQAITAVIVLGAIWLLNDYRGVPT 243
Cdd:COG4214 162 PTFQAIGNGFLPDILGTLswvLGAVAVAAYVALQLRSRRRRRRYGLPVEPLWLFVLKLALLAVLILGAVYLLNSYRGIPI 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489011810 244 PVLILAALLLAGLFMATRTAFGRRIYAIGGNLEAARLSGINVERTKLAVFAINGLMVAIAGLILSSRLGAGSPSAGNIAE 323
Cdd:COG4214 242 VVLILLVLVVVYTFVLTRTVFGRHIYAVGGNPEAARLSGINVRRVTFSVFVNMGVLAALAGIVFAARLNSATPSAGTGFE 321
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489011810 324 LDAIAACVIGGTSLAGGIGSVAGAVMGAFIMSALDNGMSMMDVATFWQYIVKGAILLLAVWMDSATKRRA 393
Cdd:COG4214 322 LDAIAAAVIGGTSLFGGVGTVYGAVIGALVMGSLNNGMSLLGVDSDWQQIVKGLVLLLAVAFDVLSRRRR 391
|
|
| GguB |
NF040906 |
sugar ABC transporter permease; |
26-392 |
8.22e-119 |
|
sugar ABC transporter permease;
Pssm-ID: 468841 [Multi-domain] Cd Length: 375 Bit Score: 349.45 E-value: 8.22e-119
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489011810 26 NLQVFVMIAAIVVIMLFFTWVTDGAYLSARNISNLLRQTAITGILAVGMVFVIISAEIDLSVGSMMGLLGGAAAIFDVWL 105
Cdd:NF040906 1 NLRQYGMLIALVAIVVLFQILTGGILLRPLNVTNLILQNSYILILAIGMLLVIIAGHIDLSVGSVVAFVGAVAAVLMVNW 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489011810 106 GWPLPLTILVTLVMGLLLGAWNGWWVAYRKVPSFIVTLAGMLAFRGILIGITNGTTVSPTSPAMSQIGQSYLPDGIGFGI 185
Cdd:NF040906 81 GMPWWLAVLLCLLVGALIGAWQGFWVAYVGIPAFIVTLAGMLVFRGLTLVVLGGQSIGPFPDGFQKISSGFLPDLFGGTG 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489011810 186 G--------VVGMAVFIVWQWRGRMRRQALGLATSSSTAAVGRQAITAVIVLGAIWLLNDYRGVPTPVLILAALLLAGLF 257
Cdd:NF040906 161 LhlltlllgVLAAAALVWSQLRGRRRRIKYGLEVEPMALFIAKLVLIAAAILFFTYLLASYRGLPNVLIILGVLILVYSF 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489011810 258 MATRTAFGRRIYAIGGNLEAARLSGINVERTKLAVFAINGLMVAIAGLILSSRLGAGSPSAGNIAELDAIAACVIGGTSL 337
Cdd:NF040906 241 VTNRTVIGRHIYAVGGNEKAAKLSGIKTKRVTFLVFVNMGVLAALAGLVFAARLNSATPKAGNGFELDAIAACFIGGASA 320
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*
gi 489011810 338 AGGIGSVAGAVMGAFIMSALDNGMSMMDVATFWQYIVKGAILLLAVWMDSATKRR 392
Cdd:NF040906 321 SGGVGTVVGAIIGALVMGVLNNGMSILGIGIDWQQVIKGLVLLAAVAFDVYNKRK 375
|
|
| AraH |
COG1172 |
Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component ... |
14-393 |
7.52e-93 |
|
Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 440785 Cd Length: 322 Bit Score: 281.61 E-value: 7.52e-93
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489011810 14 TAPAALPALKGLNLQVFVMIAAIVVIMLFFTWVTDGaYLSARNISNLLRQTAITGILAVGMVFVIISAEIDLSVGSMMGL 93
Cdd:COG1172 3 ATTTTARSLLRRLLPELGLLLALVLLLVVFSILSPG-FLSPGNLSNILRQAAILGILALGMTLVIITGGIDLSVGSVVAL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489011810 94 LGGAAAIFDVWLGWPLPLTILVTLVMGLLLGAWNGWWVAYRKVPSFIVTLAGMLAFRGILIGITNGTTVSPTSPAMSQIG 173
Cdd:COG1172 82 SGVVAALLLVALGLPILLAILLALLVGALLGLLNGLLVAKLRIPPFIVTLGTMFIARGLALLLTGGRPISGLPDAFRALG 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489011810 174 QSYLPdgigfgigvvgmavfivwqwrgrmrrqalglatssstaavgrqaitavivlgaiwllndyrGVPTPVLILAALLL 253
Cdd:COG1172 162 QGSLL-------------------------------------------------------------GIPVPVLIALVVAL 180
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489011810 254 AGLFMATRTAFGRRIYAIGGNLEAARLSGINVERTKLAVFAINGLMVAIAGLILSSRLGAGSPSAGNIAELDAIAACVIG 333
Cdd:COG1172 181 VAWFLLRRTRFGRYIYAVGGNEEAARLSGINVRRVKILAYVLSGLLAGLAGILLAARLGSAQPNAGSGYELDAIAAVVIG 260
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|
gi 489011810 334 GTSLAGGIGSVAGAVMGAFIMSALDNGMSMMDVATFWQYIVKGAILLLAVWMDSATKRRA 393
Cdd:COG1172 261 GTSLTGGRGSVLGTLLGALILGVLNNGLNLLGVSSYWQQIVKGAIILLAVLLDRLRRRRR 320
|
|
| TM_PBP1_transp_AraH_like |
cd06579 |
Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the ... |
64-386 |
4.07e-74 |
|
Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the TM of a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of the monosaccharide arabinose. This group also contains E. coli RbsC, AlsC, and MglC, which are TMs of other monosaccharide transporters, the ribose transporter, the D-allose transporter and the galactose transporter, respectively. The D-allose transporter may also be involved in low affinity ribose transport. These transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. Proteins in this subgroup have a single TM which homodimerizes to generate the transmembrane pore.
Pssm-ID: 119321 [Multi-domain] Cd Length: 263 Bit Score: 231.53 E-value: 4.07e-74
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489011810 64 TAITGILAVGMVFVIISAEIDLSVGSMMGLLGGAAAIFDVWLGWPLPLTILVTLVMGLLLGAWNGWWVAYRKVPSFIVTL 143
Cdd:cd06579 1 AAVLGILALGMTLVIITGGIDLSVGSVAALSAVVAALLLVNAGLPIPLAILAALAVGALIGLLNGLLVAYLRIPPFIVTL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489011810 144 AGMLAFRGILIGITNGTTVSPTSPAMSQIGQSYLpdgigfgigvvgmavfivwqwrgrmrrqalglatssstaavgrqai 223
Cdd:cd06579 81 GTMFILRGLALLITGGRPISGLPPLFSFFLGGGL---------------------------------------------- 114
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489011810 224 tavivlgaiwllndYRGVPTPVLILAALLLAGLFMATRTAFGRRIYAIGGNLEAARLSGINVERTKLAVFAINGLMVAIA 303
Cdd:cd06579 115 --------------ILGIPVPVLIALAVALVAWFLLRRTRFGRYLYAVGGNPEAARLSGINVRRVKILAYVLSGLLAGLA 180
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489011810 304 GLILSSRLGAGSPSAGNIAELDAIAACVIGGTSLAGGIGSVAGAVMGAFIMSALDNGMSMMDVATFWQYIVKGAILLLAV 383
Cdd:cd06579 181 GILLAARLGSAQPTAGNGYELDAIAAVVLGGTSLTGGRGSVLGTLLGALLLGVLNNGLNLLGVSSFWQQIVKGAILLLAV 260
|
...
gi 489011810 384 WMD 386
Cdd:cd06579 261 ALD 263
|
|
| rbsC |
PRK09512 |
ribose ABC transporter permease protein; Reviewed |
51-390 |
3.77e-59 |
|
ribose ABC transporter permease protein; Reviewed
Pssm-ID: 181922 [Multi-domain] Cd Length: 320 Bit Score: 194.94 E-value: 3.77e-59
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489011810 51 YLSARNISNLLRQTAITGILAVGMVFVIISAEIDLSVGSMMGLLGGAAAIFdVWLGWPLPLTILVTLVMGLLLGAWNGWW 130
Cdd:PRK09512 39 FFTVNNLFNILQQTSVNAIMAVGMTLVILTSGIDLSVGSLLALTGAVAASI-VGIEVNALVAVPAALALGAAIGAVTGVI 117
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489011810 131 VAYRKVPSFIVTLAGMLAFRGILIGITNGttvSPTSPAMSQIGQSYlpdgigfgigvvgmavfiVWQWRGRMRrqalgla 210
Cdd:PRK09512 118 VAKGKVQAFIATLVMMLLLRGVTMVYTDG---SPINTGFTDNADLF------------------GWFGIGRPL------- 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489011810 211 tssstaavgrqaitavivlgaiwllndyrGVPTPVLILAALLLAGLFMATRTAFGRRIYAIGGNLEAARLSGINVERTKL 290
Cdd:PRK09512 170 -----------------------------GIPTPVWIMAIVFLAAWYMLHHTRLGRYIYALGGNEAATRLSGINVNKVKI 220
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489011810 291 AVFAINGLMVAIAGLILSSRLGAGSPSAGNIAELDAIAACVIGGTSLAGGIGSVAGAVMGAFIMSALDNGMSMMDVATFW 370
Cdd:PRK09512 221 IVYALCGLLAALAGIIEVARLSSAQPTAGTGYELDAIAAVVLGGTSLAGGKGRIVGTLIGALILGFLNNGLNLLGVSSYY 300
|
330 340
....*....|....*....|
gi 489011810 371 QYIVKGAILLLAVWMDSATK 390
Cdd:PRK09512 301 QMIVKAVVILLAVLVDNKKQ 320
|
|
| COG4158 |
COG4158 |
Predicted ABC-type sugar transport system, permease component [General function prediction ... |
27-391 |
4.40e-59 |
|
Predicted ABC-type sugar transport system, permease component [General function prediction only];
Pssm-ID: 443324 Cd Length: 334 Bit Score: 195.15 E-value: 4.40e-59
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489011810 27 LQVFVMIAAIVVIMLFFTWVTdGAYLSARNISNLLRQTAITGILAVGMVFVIISAEIDLSVGSMMGLLGGAAAIFDVWLG 106
Cdd:COG4158 27 LQAVGMLPVLILLCIGFELLT-PNFLTVQNLSNIARQASINIVLAAGMTFVILTGGIDLSVGSILAASAVVAVLVSLLPG 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489011810 107 WPLpLTILVTLVMGLLLGAWNGWWVAYRKVPSFIVTLAGMLAFRGILIGITNGTTVSPTSPAMSQIGQSYLpdgigfgig 186
Cdd:COG4158 106 LGL-LGIPAALLVGLLFGLINGLLIAFLKLPPFIVTLGSLTALRGAARLLANGTTVFNPDLPFAWIGNGYL--------- 175
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489011810 187 vvgmavfivwqwrgrmrrqalglatssstAAVGRQAITAVIVLGAIWllndyrgvptpvlilaalllaglFMATRTAFGR 266
Cdd:COG4158 176 -----------------------------LGIPWLVVIALAVVLASW-----------------------FILRRTVLGV 203
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489011810 267 RIYAIGGNLEAARLSGINVERTKLAVFAINGLMVAIAGLILSSRL-GAGSPSAGNIAELDAIAACVIGGTSLAGGIGSVA 345
Cdd:COG4158 204 HIYAVGGNAQAARLTGIKVWRVLLFVYAVSGLLAGLGGVMSAARLyAANGLQLGQGYELDAIAAVILGGTSFVGGIGSIW 283
|
330 340 350 360
....*....|....*....|....*....|....*....|....*.
gi 489011810 346 GAVMGAFIMSALDNGMSMMDVATFWQYIVKGAILLLAVWMDSATKR 391
Cdd:COG4158 284 GTLIGALIIAVLNNGLILLGVSDFWQFIIKGLVIIIAVALDRYRQR 329
|
|
| MglC |
COG4211 |
ABC-type glucose/galactose transport system, permease component [Carbohydrate transport and ... |
33-387 |
7.75e-57 |
|
ABC-type glucose/galactose transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 443358 Cd Length: 336 Bit Score: 189.34 E-value: 7.75e-57
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489011810 33 IAAIVVIMLFFTWVTDGAYLSARNISNLLRQTAITGILAVGMVFVIISAEIDLSVGSMMGLLGGAAA-----------IF 101
Cdd:COG4211 18 IYIVLLLLIIAIIIINPNFLSLRNIRNILTQSSTRMIIALGVAGLIVTQGTDLSAGRMVGLAAVISAsllqsgdyagkFF 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489011810 102 DVWLGWPLPLTILVTLVMGLLLGAWNGWWVAYRKVPSFIVTLAGMLAFRGIL---IGITNGTTVSPTSPAMSQIGQsylp 178
Cdd:COG4211 98 PNLPELPIIVPILIAIAIGALFGLINGFFVAKLKVPPFIATLGTMLIVYGINsiyTDRPGAQPIGGLDESFTNFAQ---- 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489011810 179 dgigfgigvvgmavfivwqwrGRMRRQALGLATssstaavgrQAITAVIVLGAIWllndyrgvptpvlilaalllaglFM 258
Cdd:COG4211 174 ---------------------GSINIGGFGIPY---------LIIYAIIVIVIMW-----------------------FI 200
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489011810 259 ATRTAFGRRIYAIGGNLEAARLSGINVERTKLAVFAINGLMVAIAGLILSSRLGAGSPSAGNIAELDAIAACVIGGTSLA 338
Cdd:COG4211 201 WNKTKFGKNMYAVGGNPEAAEVSGVNVFKTLIIVYALAGALYGFAGFLEAARTGSATNNYGNGYELDAIAACVVGGVSFS 280
|
330 340 350 360
....*....|....*....|....*....|....*....|....*....
gi 489011810 339 GGIGSVAGAVMGAFIMSALDNGMSMMDVATFWQYIVKGAILLLAVWMDS 387
Cdd:COG4211 281 GGIGKISGVVIGVLIFTVINYGLTFIGVNPYWQYIIKGLIIIAAVALDI 329
|
|
| araH |
PRK11285 |
L-arabinose transporter permease protein; Provisional |
2-393 |
2.09e-52 |
|
L-arabinose transporter permease protein; Provisional
Pssm-ID: 183076 [Multi-domain] Cd Length: 333 Bit Score: 177.56 E-value: 2.09e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489011810 2 SKNTSSEIKLTPTAPAALPALKGLNLQVFVMIAAIVVIMLFFTwVTDgaYLSARNISNLLRQTAITGILAVGMVFVIISA 81
Cdd:PRK11285 4 VSTSGSGAAAAAPPKSRFSLWRIWDQYGMLVVFAVLFIACSLF-VPN--FASFINMKGLGLAISMIGMVACTMLFCLASG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489011810 82 EIDLSVGSMMGLLGGAAAIF-----DVWLGwplpltILVTLVMGLLLGAWNGWWVAYRKVPSFIVTLAGMLAFRGILIGI 156
Cdd:PRK11285 81 DFDLSVASVVAFAGVVTAVVinateSLWLG------VAAGLLLGAAVGLVNGFVIARLKINALITTLATMQIVRGLAYII 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489011810 157 TNGTTVSPTSPAMSQIGqsylpdgigfgigvvgmavfivwqwrgrmrrqalglatssstaavgrqaitavivlGAIWLln 236
Cdd:PRK11285 155 SDGKAVGISDERFFALG--------------------------------------------------------YANFF-- 176
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489011810 237 dyrGVPTPVLILAALLLAGLFMATRTAFGRRIYAIGGNLEAARLSGINVERTKLAVFAINGLMVAIAGLILSSRLGAGSP 316
Cdd:PRK11285 177 ---GVPAPIWLTVACFVVFGFLLNKTTFGRNTLAIGGNEEAARLAGVPVVRTKIIIFVLQGLVSALAGVILASRMTSGQP 253
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 489011810 317 SAGNIAELDAIAACVIGGTSLAGGIGSVAGAVMGAFIMSALDNGMSMMDVATFWQYIVKGAILLLAVWMDSATKRRA 393
Cdd:PRK11285 254 MTSIGFELIVISACVLGGVSLKGGIAKISGVVAGVLILGTVENAMNLLNISPFYQYVVRGLILLAAVLFDRYKQRAK 330
|
|
| mglC |
PRK09478 |
galactose/methyl galactoside ABC transporter permease MglC; |
33-387 |
2.39e-48 |
|
galactose/methyl galactoside ABC transporter permease MglC;
Pssm-ID: 181892 [Multi-domain] Cd Length: 336 Bit Score: 167.17 E-value: 2.39e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489011810 33 IAAIVVIMLFFTWVTDGAYLSARNISNLLRQTAITGILAVGMVFVIISAEIDLSVGSMMGLLGGAAA-----------IF 101
Cdd:PRK09478 18 IYVVLLVLLAIIIIQDPTFLSLLNLSNILTQSSVRIIIALGVAGLIVTQGTDLSAGRQVGLAAVVAAtllqsmdnankVF 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489011810 102 DVWLGWPLPLTILVTLVMGLLLGAWNGWWVAYRKVPSFIVTLAGMLAFRGILIGITNGTTVSPT---SPAMSQIGQSYLp 178
Cdd:PRK09478 98 PELATMPIALVILIVCAIGAVIGLINGLIIAYLNVTPFIATLGTMIIVYGINSLYYDFVGASPIsgfDSGFSTFAQGFV- 176
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489011810 179 dgigfgigvvgmavfivwqwrgrmrrqALGLATSSSTAavgrqaITAVIVLGAIWllndyrgvptpvlilaalllaglFM 258
Cdd:PRK09478 177 ---------------------------ALGSFRLSYIT------FYALIAVAFVW-----------------------VL 200
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489011810 259 ATRTAFGRRIYAIGGNLEAARLSGINVERTKLAVFAINGLMVAIAGLILSSRLGAGSPSAGNIAELDAIAACVIGGTSLA 338
Cdd:PRK09478 201 WNKTRFGKNIFAIGGNPEAAKVSGVNVPLNLLMIYALSGVFYAFGGMLEAGRIGSATNNLGFMYELDAIAACVVGGVSFS 280
|
330 340 350 360
....*....|....*....|....*....|....*....|....*....
gi 489011810 339 GGIGSVAGAVMGAFIMSALDNGMSMMDVATFWQYIVKGAILLLAVWMDS 387
Cdd:PRK09478 281 GGVGTVIGVVTGVIIFTVINYGLTYIGVNPYWQYIIKGAIIIFAVALDS 329
|
|
| PRK09699 |
PRK09699 |
D-allose ABC transporter permease; |
36-386 |
2.73e-42 |
|
D-allose ABC transporter permease;
Pssm-ID: 182035 [Multi-domain] Cd Length: 312 Bit Score: 150.31 E-value: 2.73e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489011810 36 IVVIMLFFTWVTDGAYLSARNISNLLRQTAITGILAVGMVFVIISAEIDLSVGSMMGLLGGAAAIFDVWLGWPLPLTILV 115
Cdd:PRK09699 18 LAIIVAIFGSLSPEYFLTTNNITQIFVQSSVTVLIGMGEFFAILVAGIDLSVGAILALSGMVTAKLMLAGVDPFLAALIG 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489011810 116 TLVMGLLLGAWNGWWVAYRKVPSFIVTLAGMLAFRGILIGITNGTTVSPTSpamsqigqsylpdgigfgigvvgmavfiv 195
Cdd:PRK09699 98 GVLVGGALGAINGCLVNWTGLHPFIITLGTNAIFRGITLVISDANSVYGFS----------------------------- 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489011810 196 wqwrgrmrrqalglatSSSTAAVGrqaitavivlgaiwllNDYRGVPTPVLILAALLLAGLFMATRTAFGRRIYAIGGNL 275
Cdd:PRK09699 149 ----------------FDFVNFFA----------------ASVIGIPVPVIFSLIVALILWFLTTRMRLGRNIYALGGNK 196
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489011810 276 EAARLSGINVERTKLAVFAINGLMVAIAGLILSSRLGAGSPSAGNIAELDAIAACVIGGTSLAGGIGSVAGAVMGAFIMS 355
Cdd:PRK09699 197 NSAFYSGIDVKFHILVVFIISGVCAGLAGVVSTARLGAAEPLAGMGFETYAIASAIIGGTSFFGGKGRIFSVVIGGLIIG 276
|
330 340 350
....*....|....*....|....*....|.
gi 489011810 356 ALDNGMSMMDVATFWQYIVKGAILLLAVWMD 386
Cdd:PRK09699 277 TINNGLNILQVQTYYQLVVMGGLIIAAVALD 307
|
|
| PRK11618 |
PRK11618 |
inner membrane ABC transporter permease protein YjfF; Provisional |
30-393 |
9.19e-41 |
|
inner membrane ABC transporter permease protein YjfF; Provisional
Pssm-ID: 183235 [Multi-domain] Cd Length: 317 Bit Score: 146.64 E-value: 9.19e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489011810 30 FVMIAAIVVIMLFFTWVTDGAYLSARNISNLLRQTAITGILAVGMVFVIISAEIDLSVGSMMGLLGGAAAIFDVWLGWPL 109
Cdd:PRK11618 8 LMITIGVFVLGYLFCLVQFPGFASTRVICNLLTDNAFLGIVAVGMTFVILSGGIDLSVGSVIAFTGVFLAKLIGDYGWSP 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489011810 110 PLTILVTLVMGLLLGAWNGWWVAYRKVPSFIVTLAGMLAFRGI--LIGITNGTTVSPTSPAMSQIGqsylpdgigfgigv 187
Cdd:PRK11618 88 LLAFPLVLVMGAAFGAFMGALIHYLKLPAFIVTLAGMFLARGVsfLVSEESIPINHPFYDTLSSLA-------------- 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489011810 188 vgmavfivWQWRGRMRRQALGLatssstaavgrqaITAVIVLGAIwllndyrgvptpvlilaalllaglFMATRTAFGRR 267
Cdd:PRK11618 154 --------WKLPGGGRLSAMAL-------------IMLAVVAIGI------------------------FLAHRTRFGNN 188
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489011810 268 IYAIGGNLEAARLSGINVERTKLAVFAINGLMVAIAGLILSSRLGAGSPSAGNIAELDAIAACVIGGTSLAGGIGSVAGA 347
Cdd:PRK11618 189 VYAIGGNATSANLMGIPVRRTTIRIYMLSGFLATLAGIVFSLYTSAGYALAAVGVELDAIAAVVIGGTLLTGGVGTVLGT 268
|
330 340 350 360
....*....|....*....|....*....|....*....|....*..
gi 489011810 348 VMGAFIMSALDNGMSM-MDVATFWQYIVKGAILLLAVWMDSATKRRA 393
Cdd:PRK11618 269 LFGVLIQGLIQTYITFdGTLSSWWTKIVIGILLFVFIALQRGLTVLA 315
|
|
| PRK15432 |
PRK15432 |
autoinducer 2 ABC transporter permease LsrC; Provisional |
33-380 |
3.12e-38 |
|
autoinducer 2 ABC transporter permease LsrC; Provisional
Pssm-ID: 185330 [Multi-domain] Cd Length: 344 Bit Score: 140.64 E-value: 3.12e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489011810 33 IAAIVVIMLFFTW--VTDGAYLSARNISNLLRQTAITGILAVGMVFVIISAEIDLSVGSMMGLlggAAAIFDVWL--GWP 108
Cdd:PRK15432 11 LTALLAIVLLFVLlgFLDRQYLSLQTLTMVFSSAQILILLAIGATLVMLTRNIDVSVGSITGL---CAVLVGMLLnaGYS 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489011810 109 LPLTILVTLVMGLLLGAWNGWWVAYRKVPSFIVTLAGMLAFRGILIGITNGTTVSPtspamsqigqsyLPDgigfgigvv 188
Cdd:PRK15432 88 LPVACLATLLLGLLAGFFNGVLVAWLRIPAIVATLGTLGLYRGIMLLWTGGKWIEG------------LPA--------- 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489011810 189 gmavfivwqwrgrmrrqalGLATSSSTAAVGRQAI---TAVIVLGAIWLLndyrgvptpvlilaalllaglfmaTRTAFG 265
Cdd:PRK15432 147 -------------------ELKQLSAPILLGISPIgwlTLILILAMAWLL------------------------AKTAFG 183
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489011810 266 RRIYAIGGNLEAARLSGINVERTKLAVFAINGLMVAIAGLILSSRLGAGSPSAGNIAELDAIAACVIGGTSLAGGIGSVA 345
Cdd:PRK15432 184 RSFYATGDNLQGARQLGVRTEAIRIVAFSLNGCMAALAGIVFASQIGFIPNQTGTGLEMKAIAACVLGGISLLGGSGTII 263
|
330 340 350
....*....|....*....|....*....|....*
gi 489011810 346 GAVMGAFIMSALDNGMSMMDVATFWQYIVKGAILL 380
Cdd:PRK15432 264 GAVLGAYFLTQIDSVLVLLRIPAWWNDFIAGLVLL 298
|
|
| BPD_transp_2 |
pfam02653 |
Branched-chain amino acid transport system / permease component; This is a large family mainly ... |
56-383 |
8.02e-23 |
|
Branched-chain amino acid transport system / permease component; This is a large family mainly comprising high-affinity branched-chain amino acid transporter proteins such as E. coli LivH and LivM, both of which are form the LIV-I transport system. Also found with in this family are proteins from the galactose transport system permease and a ribose transport system.
Pssm-ID: 396977 [Multi-domain] Cd Length: 269 Bit Score: 96.56 E-value: 8.02e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489011810 56 NISNLLRQTAITGILAVGMVFVI-ISAEIDLSVGSMMGLLGGAAAIFDVWLGWPLPLTILVTLVMGLLLGAWNGWWVAYR 134
Cdd:pfam02653 1 NILNILTLASIYAIAALGLTLIYgIAGVINLGHGGFMMLGAYVAAMLLNLLGPGLWLALPVGILVGAAVGLLIGILTLRL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489011810 135 KVPSFIVTLAGMLAFRGILIGITNGTTVSPTSPAMSQIGqsylpdgigfgigvvgmavfivwqwrgrmrrqALGLATSSS 214
Cdd:pfam02653 81 KINEVIITLLLNLAALGLALFLVTGILGGEGGTSGITGP--------------------------------SGFPGAFLS 128
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489011810 215 TAAVGRQAITAVIVLGAIWLLndyrgvptpvlilaalllaglfmaTRTAFGRRIYAIGGNLEAARLSGINVERTKLAVFA 294
Cdd:pfam02653 129 FAFAFIFLLALLLVLALWLLL------------------------YRTKFGRALRAVGENEEAARAAGINVKKLKLLTFV 184
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489011810 295 INGLMVAIAGLILSSRLGAGSPS-AGNIAELDAIAACVIggtslaGGIGSVAGAVMGAFIMSALDNGMSMM-DVATFWQY 372
Cdd:pfam02653 185 ISGALAGLAGALLALYTGVVPPSnFGVGLGLDAIAAVVL------GGAGSPIGVVIGSLIIGLVQSLGLGAlGSPPELSL 258
|
330
....*....|.
gi 489011810 373 IVKGAILLLAV 383
Cdd:pfam02653 259 LVLGALLILVL 269
|
|
| PRK15038 |
PRK15038 |
autoinducer 2 ABC transporter permease LsrD; |
68-383 |
5.48e-16 |
|
autoinducer 2 ABC transporter permease LsrD;
Pssm-ID: 184998 Cd Length: 330 Bit Score: 78.33 E-value: 5.48e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489011810 68 GILAVGMVFVIISAEIDLSVGSMMGLLGGAAAIFdVWLGWPLPLTILVTLVMGLLLGAWNGWWVAYRKVPSFIVTLAGML 147
Cdd:PRK15038 46 GIVALPLTMVIVSGGIDISFGSTIGLCAIALGVL-FQSGVPMPLAILLTLLLGALCGLINAGLIIYTGVNPLVITLGTLY 124
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489011810 148 AFRGIligitngttvsptspamsqigqsylpdgigfgigvvgmavfivwqwrgrmrrqalGLATSSSTAAVGRQAITAVI 227
Cdd:PRK15038 125 LFGGS-------------------------------------------------------ALLLSGMAGATGYEGIGGFP 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489011810 228 VLGAIWLLNDYRGVPTPVLILAALLLAGLFMATRTAFGRRIYAIGGNLEAARLSGINVERTKLAVFAINGLMVAIAGLIL 307
Cdd:PRK15038 150 MAFTDFANLDVLGLPVPLIIFLICLLVFWLLMHRTHAGRNVFLIGQSPRVALYSAIPVNRTLCALYAMTGLASAIAAVLL 229
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 489011810 308 SSRLGAGSPSAGNIAELDAIAACVIGGTSLAGGIGSVAGAVMGAFIMSALDNGMSMMDVATFWQYIVKGAILLLAV 383
Cdd:PRK15038 230 VSYFGSARSDLGASFLMPAITAVVLGGANIYGGSGSIIGTALAVLLVGYLQQGLQMAGVPNQISSALSGALLIVVV 305
|
|
| TM_PBP1_branched-chain-AA_like |
cd06574 |
Transmembrane subunit (TM) of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette ... |
66-383 |
9.53e-15 |
|
Transmembrane subunit (TM) of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which are involved in the uptake of branched-chain amino acids (AAs), as well as TMs of transporters involved in the uptake of monosaccharides including ribose, galactose, and arabinose. These transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. This group includes Escherichia coli LivM and LivH, two TMs which heterodimerize to form the translocation pathway of the E. coli branched-chain AA LIV-1/LS transporter. This transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) and LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine. Included in this group are proteins from transport systems that contain a single TM which homodimerizes to generate the transmembrane pore; for example E. coli RbsC, AlsC, and MglC, the TMs of the high affinity ribose transporter, the D-allose transporter and the galactose transporter, respectively. The D-allose transporter may also to be involved in low affinity ribose transport.
Pssm-ID: 119320 [Multi-domain] Cd Length: 266 Bit Score: 73.47 E-value: 9.53e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489011810 66 ITGILAVGMVFVIISAEIDLSVGSMMGLLGGAAAIFDVWLGWPLPLTILVTLVMGLLLGAWNGWWVAYRKVPSFIVTLAG 145
Cdd:cd06574 3 IYAILALGVYIVFRILGFPDLTVDGSFPLGAAVAAILIVAGYNPWLALIAAILAGAAAGLVTGFLHTRLKINGLLAGILI 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489011810 146 MLAFRGILIGITNGTTVSptspamsQIGQSYLPDGIGFGIGVVGMAVFIVWQwrgrmrrqalglatssstaavgrqAITA 225
Cdd:cd06574 83 MIGLYSINLRIMGGPNIP-------LGTRDTLLGLLLLFGISGTLSIPVVLL------------------------LIVL 131
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489011810 226 VIVLGAIWLLndyrgvptpvlilaalllaglfmatRTAFGRRIYAIGGNLEAARLSGINVERTKLAVFAINGLMVAIAGL 305
Cdd:cd06574 132 LVLFLVIWFL-------------------------RTKLGLAMRATGDNPDMARSLGINVDRTRILGLVISNALAALGGA 186
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489011810 306 ILSSRLGAGSPSAGNIAELDAIAACVIGGTSLAG--GIGSVAGAVMGAFIMSALDNGMSMMDVATFWQYIVKGAILLLAV 383
Cdd:cd06574 187 LYAQYQGFADVNMGIGTGVIGLAAVIIGGAIVGRrtIKASILGVIIGAILYRIALALALGSGLIPSDLKLITAGVIVLVL 266
|
|
| LivM |
COG4177 |
ABC-type branched-chain amino acid transport system, permease component [Amino acid transport ... |
59-383 |
3.82e-12 |
|
ABC-type branched-chain amino acid transport system, permease component [Amino acid transport and metabolism];
Pssm-ID: 443336 [Multi-domain] Cd Length: 285 Bit Score: 66.26 E-value: 3.82e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489011810 59 NLLRQTAITGILAVGMVFVI-ISAEIDLSVGSMMGLLGGAAAIFDVWLGWPLPLTILVTLVMGLLLGAWNGWWVAYRKVP 137
Cdd:COG4177 6 SLLTLILIYAILALGLNLLLgYTGLLSLGHAAFFGIGAYAAALLTTHLGLPFWLALLLAGLVAALLGLLIGLPALRLRGD 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489011810 138 SF-IVTLAGMLAFRGILI---GITNGTTvsptspamsqiGQSYLPDGIGfgigvvgmavfivwqwrgrmrrqaLGLATSS 213
Cdd:COG4177 86 YLaIATLAFAEIVRLLALnleSLTGGAD-----------GLSGIPRPTL------------------------FGLDLGS 130
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489011810 214 STAAVgrqAITAVIVLGAIWLLNdyrgvptpvlilaalllaglfMATRTAFGRRIYAIGGNLEAARLSGINVERTKLAVF 293
Cdd:COG4177 131 PLAFY---YLVLALLVLVLLLLR---------------------RLVRSRFGRALRAIRENEIAAEALGINVTRYKLLAF 186
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489011810 294 AINGLMVAIAGLILSSRLGAGSPSAGNIAE-LDAIAACVIggtslaGGIGSVAGAVMGAFIMSALDNGMSMMdvaTFWQY 372
Cdd:COG4177 187 VLSAALAGLAGALYAHYVGFVSPESFSFLLsIEILLMVVL------GGLGSLLGPVLGAVLLVLLPELLRSL---PEYRL 257
|
330
....*....|.
gi 489011810 373 IVKGAILLLAV 383
Cdd:COG4177 258 LIFGLLLILVV 268
|
|
| TM_PBP1_LivM_like |
cd06581 |
Transmembrane subunit (TM) of Escherichia coli LivM and related proteins. LivM is one of two ... |
65-383 |
3.36e-11 |
|
Transmembrane subunit (TM) of Escherichia coli LivM and related proteins. LivM is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of branched-chain amino acids (AAs). These types of transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. E. coli LivM forms a heterodimer with another TM, LivH, to generate the transmembrane pore. LivH is not included in this subgroup. The LIV-1/LS transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) or LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine.
Pssm-ID: 119323 [Multi-domain] Cd Length: 268 Bit Score: 63.23 E-value: 3.36e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489011810 65 AITGILAVGMVFVI-ISAEIDLSVGSMMGLLGGAAAIFDVWLGWPLPLTILVTLVMGLLLGAWNGWWVAYRKVPSF-IVT 142
Cdd:cd06581 2 LIYAILALGLNLLLgYAGQLSLGHAAFFGIGAYTAALLATRLGLPFWLALLAAGLVAALVGLLLGLPALRLRGVYFaIAT 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489011810 143 LAGMLAFRGILI---GITNGTTvsptspAMSQIGQSYLPDGIGFGIGVVGMAVFIVwqwrgrmrrqalglatssstaavg 219
Cdd:cd06581 82 LAFAEIVRLLALnwsSLTGGSN------GLSGIPPPLLGGLLLSSPLAFYYLVLAV------------------------ 131
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489011810 220 rqaitAVIVLGAIWLLndyrgvptpvlilaalllaglfmaTRTAFGRRIYAIGGNLEAARLSGINVERTKLAVFAINGLM 299
Cdd:cd06581 132 -----LLLVLLLLRRL------------------------VRSPFGRALRAIRENEVAAEALGINVTRYKLLAFALSAAL 182
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489011810 300 VAIAGLILSSRLGAGSPSAGNIAE-LDAIAACVIggtslaGGIGSVAGAVMGAFIMSALDNGMSmmDVATFWQYIVKGAI 378
Cdd:cd06581 183 AGLAGALYAHYLGFVSPESFGFALsIELLLMVVL------GGLGSLLGPVLGAALLVLLPELLR--SLGPGLRLLVFGLL 254
|
....*
gi 489011810 379 LLLAV 383
Cdd:cd06581 255 LILVV 259
|
|
| TM_PBP1_LivH_like |
cd06582 |
Transmembrane subunit (TM) of Escherichia coli LivH and related proteins. LivH is one of two ... |
65-353 |
1.38e-10 |
|
Transmembrane subunit (TM) of Escherichia coli LivH and related proteins. LivH is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of branched-chain amino acids (AAs). These types of transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. E. coli LivH forms a heterodimer with another TM, LivM, to generate the transmembrane pore. LivM is not included in this subgroup. The LIV-1/LS transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) or LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine.
Pssm-ID: 119324 [Multi-domain] Cd Length: 272 Bit Score: 61.29 E-value: 1.38e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489011810 65 AITGILAVGMVFVIISAE-IDLSVGSMMGLLGGAAAIFDVWLGWPLPLTILVTLVMGLLLGAWNGWWV----AYRKVPSF 139
Cdd:cd06582 6 AIYALIALGLTLIFGVTGvINFAHGEFYMLGAYVAYTLLVALGLPFWLALLLALLVAALLGVLLERLVlrplRGAPLLTL 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489011810 140 IVTLAGMLAFRGILIGITNGTTVSPTSPAMSqigqsylpdgigfgIGVVGMAVFIVWQwrgrmrrQALGLAtssstaavg 219
Cdd:cd06582 86 LITFGGLLILLQGLLLIFGGDPRVPPPPLLS--------------GSVELGGVTIPPY-------RLFIIA--------- 135
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489011810 220 rqaITAVIVLGAIWLLNdyrgvptpvlilaalllaglfmatRTAFGRRIYAIGGNLEAARLSGINVERTKLAVFAINGLM 299
Cdd:cd06582 136 ---VALVLLAALYLFLR------------------------RTRLGRAIRAVAQNPEAARLLGINVRRVFALTFALGAAL 188
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 489011810 300 VAIAGLILSSRLGAgSPSAGNIAELDAIAACVIggtslaGGIGSVAGAVMGAFI 353
Cdd:cd06582 189 AGLAGVLLAPITGV-SPTMGLLLLLKAFAAVVL------GGLGSIPGAVVGGLL 235
|
|
| LivH |
COG0559 |
Branched-chain amino acid ABC-type transport system, permease component [Amino acid transport ... |
260-381 |
2.01e-10 |
|
Branched-chain amino acid ABC-type transport system, permease component [Amino acid transport and metabolism];
Pssm-ID: 440325 [Multi-domain] Cd Length: 290 Bit Score: 61.23 E-value: 2.01e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489011810 260 TRTAFGRRIYAIGGNLEAARLSGINVERTKLAVFAINGLMVAIAGLILSSRLGAgSPSAGNIAELDAIAACVIggtslaG 339
Cdd:COG0559 159 RRTRLGLAMRAVAQNREAARLMGINVDRVIALTFALGAALAGLAGVLLAPIYSV-SPTMGFLLGLKAFAAVVL------G 231
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 489011810 340 GIGSVAGAVMGAFIMSALDNGMSMMdVATFWQYIVKGAILLL 381
Cdd:COG0559 232 GLGSIPGAVVGGLLLGLAESLGAAY-LPSGYKDVVAFVLLIL 272
|
|
| TM_PBP1_transp_TpRbsC_like |
cd06580 |
Transmembrane subunit (TM) of Treponema pallidum (Tp) RbsC-1, RbsC-2 and related proteins. ... |
257-368 |
1.00e-05 |
|
Transmembrane subunit (TM) of Treponema pallidum (Tp) RbsC-1, RbsC-2 and related proteins. This is a functionally uncharacterized subgroup of TMs which belong to a larger group of TMs of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters, which are mainly involved in the uptake of branched-chain amino acids (AAs) or in the uptake of monosaccharides including ribose, galactose, and arabinose, and which generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction.
Pssm-ID: 119322 [Multi-domain] Cd Length: 234 Bit Score: 46.28 E-value: 1.00e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489011810 257 FMATRTAFGRRIYAIGGNLEAARLSGINVERTKLAVFAINGLMVAIAGLILS-SRLGAGSPSAGNIAELDAIAACVIGGt 335
Cdd:cd06580 110 LLLYRTRFGLRLRAVGENPRAARYAGINVKRVRLLAMLISGALAGLAGAYLVlGVQGRFTEGMSAGYGFIAIAVALLGR- 188
|
90 100 110
....*....|....*....|....*....|...
gi 489011810 336 slaggiGSVAGAVMGAFIMSALDNGMSMMDVAT 368
Cdd:cd06580 189 ------WNPLGILLAALLFGALEAGGIALQRSG 215
|
|
| PRK10740 |
PRK10740 |
high-affinity branched-chain amino acid ABC transporter permease LivH; |
265-383 |
1.14e-05 |
|
high-affinity branched-chain amino acid ABC transporter permease LivH;
Pssm-ID: 182689 [Multi-domain] Cd Length: 308 Bit Score: 46.84 E-value: 1.14e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489011810 265 GRRIYAIGGNLEAARLSGINVERTKLAVFAINGLMVAIAGLILSSRLGAGSPSAGNIAELDAIAACVIggtslaGGIGSV 344
Cdd:PRK10740 181 GRACRACAEDLKMASLLGINTDRVIALTFVIGAAMAAVAGVLLGQFYGVINPYIGFMAGMKAFTAAVL------GGIGSI 254
|
90 100 110
....*....|....*....|....*....|....*....
gi 489011810 345 AGAVMGAFIMsALDNGMSMMDVATFWQYIVKGAILLLAV 383
Cdd:PRK10740 255 PGAMIGGLIL-GIAEALSSAYLSTEYKDVVSFALLILVL 292
|
|
| NupP |
COG4603 |
ABC-type guanosine uptake system NupNOPQ, permease component NupP [Nucleotide transport and ... |
257-368 |
5.94e-05 |
|
ABC-type guanosine uptake system NupNOPQ, permease component NupP [Nucleotide transport and metabolism];
Pssm-ID: 443653 [Multi-domain] Cd Length: 356 Bit Score: 44.73 E-value: 5.94e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489011810 257 FMATRTAFGRRIYAIGGNLEAARLSGINVERTKLAVFAINGLMVAIAGLI----LSSRLGAG-SPSAGniaeLDAIAACV 331
Cdd:COG4603 212 VLLNRTTLGYELRAVGLNPRAARYAGINVKRLIVLAMLISGALAGLAGAVevlgVQGRLTPGfSPGYG----FTGIAVAL 287
|
90 100 110
....*....|....*....|....*....|....*..
gi 489011810 332 IGGtslaggiGSVAGAVMGAFIMSALDNGMSMMDVAT 368
Cdd:COG4603 288 LGR-------NNPLGIILAALLFGALYVGGDAMQRAL 317
|
|
| |
