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Conserved domains on  [gi|489049247|ref|WP_002959461|]
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MULTISPECIES: 30S ribosomal protein S4 [Alteromonadales]

Protein Classification

ribosomal protein uS4 family protein( domain architecture ID 11424867)

universal ribosomal protein uS4 family protein similar to Homo sapiens U3 small nucleolar ribonucleoprotein protein IMP3 that is required for the early cleavages during pre-18S ribosomal RNA processing

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
RpsD COG0522
Ribosomal protein S4 or related protein [Translation, ribosomal structure and biogenesis]; ...
 1-206 2.52e-133

Ribosomal protein S4 or related protein [Translation, ribosomal structure and biogenesis]; Ribosomal protein S4 or related protein is part of the Pathway/BioSystem: Ribosome 30S subunit


:

Pssm-ID: 440288 [Multi-domain]  Cd Length: 204  Bit Score: 372.10  E-value: 2.52e-133
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489049247   1 MARYLGPKLKLSRREGTDLFLKSgvraiDSKCKLE---TAPGQHGARKGRLSDYGLQLREKQKVRRIYGVLEKQFRNYYK 77
Cdd:COG0522    1 MARYTGPKCKLCRREGVKLFLKG-----ERKCALErrpYPPGQHGQRRKKLSDYGLQLREKQKLRRIYGVLEKQFRRYFE 75

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489049247  78 EAARLKGNTGENLLQLLEQRLDNVVYRMGFASTRAEARQLVSHKAILVNGRVVNIPSYVITPEDTVVIREKSKTQARIIA 157
Cdd:COG0522   76 EAARRKGNTGENLLQLLERRLDNVVYRLGFAPTRAQARQLVSHGHILVNGKKVNIPSYQVKPGDVIEVREKSKKLPRIKE 155

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*....
gi 489049247 158 ALELAEQREKPTWVEVDGKKLEGSFKRLPERSDLSADINEQLIVELYSK 206
Cdd:COG0522  156 ALESAEQRGVPEWLEVDAEKLSGTVVRLPEREEIPVPINEQLIVELYSR 204
 
Name Accession Description Interval E-value
RpsD COG0522
Ribosomal protein S4 or related protein [Translation, ribosomal structure and biogenesis]; ...
 1-206 2.52e-133

Ribosomal protein S4 or related protein [Translation, ribosomal structure and biogenesis]; Ribosomal protein S4 or related protein is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 440288 [Multi-domain]  Cd Length: 204  Bit Score: 372.10  E-value: 2.52e-133
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489049247   1 MARYLGPKLKLSRREGTDLFLKSgvraiDSKCKLE---TAPGQHGARKGRLSDYGLQLREKQKVRRIYGVLEKQFRNYYK 77
Cdd:COG0522    1 MARYTGPKCKLCRREGVKLFLKG-----ERKCALErrpYPPGQHGQRRKKLSDYGLQLREKQKLRRIYGVLEKQFRRYFE 75

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489049247  78 EAARLKGNTGENLLQLLEQRLDNVVYRMGFASTRAEARQLVSHKAILVNGRVVNIPSYVITPEDTVVIREKSKTQARIIA 157
Cdd:COG0522   76 EAARRKGNTGENLLQLLERRLDNVVYRLGFAPTRAQARQLVSHGHILVNGKKVNIPSYQVKPGDVIEVREKSKKLPRIKE 155

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*....
gi 489049247 158 ALELAEQREKPTWVEVDGKKLEGSFKRLPERSDLSADINEQLIVELYSK 206
Cdd:COG0522  156 ALESAEQRGVPEWLEVDAEKLSGTVVRLPEREEIPVPINEQLIVELYSR 204
rpsD PRK05327
30S ribosomal protein S4; Validated
 1-206 2.63e-132

30S ribosomal protein S4; Validated


Pssm-ID: 235411 [Multi-domain]  Cd Length: 203  Bit Score: 369.43  E-value: 2.63e-132
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489049247   1 MARYLGPKLKLSRREGTDLFLKsGVRAIDSKCkletAPGQHGA--RKGRLSDYGLQLREKQKVRRIYGVLEKQFRNYYKE 78
Cdd:PRK05327   1 MARYTGPKCKLSRRLGVDLFKS-GKRCLKRKY----PPGQHGQrrRKPKLSDYGLQLREKQKLRRIYGVLEKQFRRYFKE 75

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489049247  79 AARLKGNTGENLLQLLEQRLDNVVYRMGFASTRAEARQLVSHKAILVNGRVVNIPSYVITPEDTVVIREKSKTQARIIAA 158
Cdd:PRK05327  76 AARRKGNTGENLLQLLESRLDNVVYRLGFAPTRRQARQLVSHGHILVNGKKVNIPSYRVKPGDVIEVREKSKKLPRIKEA 155

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*...
gi 489049247 159 LELAEQREKPTWVEVDGKKLEGSFKRLPERSDLSADINEQLIVELYSK 206
Cdd:PRK05327 156 LELAERRGVPDWLEVDAEKLEGTFKRLPEREEIPVPINEQLIVELYSK 203
rpsD_bact TIGR01017
ribosomal protein S4, bacterial/organelle type; This model finds organelle (chloroplast and ...
 3-206 9.85e-107

ribosomal protein S4, bacterial/organelle type; This model finds organelle (chloroplast and mitochondrial) ribosomal protein S4 as well as bacterial ribosomal protein S4. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 200066 [Multi-domain]  Cd Length: 200  Bit Score: 305.00  E-value: 9.85e-107
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489049247    3 RYLGPKLKLSRREGTDLFLKSgvRAIDSKCKleTAPGQHGARKGRLSDYGLQLREKQKVRRIYGVLEKQFRNYYKEAARL 82
Cdd:TIGR01017   1 RYTGPKFKLSRRLGVNLFGKS--RKLLLKRK--YPPGQHGQRRKKLSDYGLQLQEKQKLKFMYGITEKQFRKYFKEAKKL 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489049247   83 KGNTGENLLQLLEQRLDNVVYRMGFASTRAEARQLVSHKAILVNGRVVNIPSYVITPEDTVVIREKSKTQARIIAALELA 162
Cdd:TIGR01017  77 KGNTGENLLRLLESRLDNVVYRLGFAPTRFAARQLVSHGHILVNGKKVDIPSYQVRPGDIISIKEKSKKIPLVKENLETN 156

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....
gi 489049247  163 EQREKPTWVEVDGKKLEGSFKRLPERSDLSADINEQLIVELYSK 206
Cdd:TIGR01017 157 GQRNIPSWLEVDKKTLEGKVLRVPERSQLPLPINESLVVEYYSR 200
Ribosomal_S4 pfam00163
Ribosomal protein S4/S9 N-terminal domain; This family includes small ribosomal subunit S9 ...
 3-95 7.91e-36

Ribosomal protein S4/S9 N-terminal domain; This family includes small ribosomal subunit S9 from prokaryotes and S16 from metazoans. This domain is predicted to bind to ribosomal RNA. This domain is composed of four helices in the known structure. However the domain is discontinuous in sequence and the alignment for this family contains only the first three helices.


Pssm-ID: 459696  Cd Length: 96  Bit Score: 121.12  E-value: 7.91e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489049247    3 RYLGPKLKLSRREGTDLFLKsGVRAIDSKCKLE-----TAPGQHGARKgRLSDYGLQLREKQKVRRIYGVLEKQFRNYYK 77
Cdd:pfam00163   1 RYKGPEQKLLRRVGFKLWKK-GRCHRELKVAQNrreypKYPGQHGKIR-KLSEYLLQLREKQKVRRKYGLLEKQLRKLYD 78

                          90
                  ....*....|....*...
gi 489049247   78 EAARLKGNTGENLLQLLE 95
Cdd:pfam00163  79 MGLKLKGVTGENLLQLLE 96
S4 cd00165
S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, ...
 96-150 1.83e-17

S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, charged residues that define a likely RNA-binding site; Found in stress proteins, ribosomal proteins and tRNA synthetases; This may imply a hitherto unrecognized functional similarity between these three protein classes.


Pssm-ID: 238095 [Multi-domain]  Cd Length: 70  Bit Score: 73.05  E-value: 1.83e-17
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 489049247  96 QRLDNVVYRMGFASTRAEARQLVSHKAILVNGRVVNIPSYVITPEDTVVIREKSK 150
Cdd:cd00165    1 MRLDKILARLGLAPSRSEARQLIKHGHVLVNGKVVTKPSYKVKPGDVIEVDGKSI 55
S4 smart00363
S4 RNA-binding domain;
96-150 1.61e-14

S4 RNA-binding domain;


Pssm-ID: 214638 [Multi-domain]  Cd Length: 60  Bit Score: 65.31  E-value: 1.61e-14
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 489049247    96 QRLDNVVYRMGFASTRAEARQLVSHKAILVNGRVVNIPSYVITPEDTVVIREKSK 150
Cdd:smart00363   1 RRLDKFLARLGLAPSRSQARRLIEQGRVKVNGKKVTKPSYIVKPGDVISVRGKEL 55
 
Name Accession Description Interval E-value
RpsD COG0522
Ribosomal protein S4 or related protein [Translation, ribosomal structure and biogenesis]; ...
 1-206 2.52e-133

Ribosomal protein S4 or related protein [Translation, ribosomal structure and biogenesis]; Ribosomal protein S4 or related protein is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 440288 [Multi-domain]  Cd Length: 204  Bit Score: 372.10  E-value: 2.52e-133
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489049247   1 MARYLGPKLKLSRREGTDLFLKSgvraiDSKCKLE---TAPGQHGARKGRLSDYGLQLREKQKVRRIYGVLEKQFRNYYK 77
Cdd:COG0522    1 MARYTGPKCKLCRREGVKLFLKG-----ERKCALErrpYPPGQHGQRRKKLSDYGLQLREKQKLRRIYGVLEKQFRRYFE 75

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489049247  78 EAARLKGNTGENLLQLLEQRLDNVVYRMGFASTRAEARQLVSHKAILVNGRVVNIPSYVITPEDTVVIREKSKTQARIIA 157
Cdd:COG0522   76 EAARRKGNTGENLLQLLERRLDNVVYRLGFAPTRAQARQLVSHGHILVNGKKVNIPSYQVKPGDVIEVREKSKKLPRIKE 155

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*....
gi 489049247 158 ALELAEQREKPTWVEVDGKKLEGSFKRLPERSDLSADINEQLIVELYSK 206
Cdd:COG0522  156 ALESAEQRGVPEWLEVDAEKLSGTVVRLPEREEIPVPINEQLIVELYSR 204
rpsD PRK05327
30S ribosomal protein S4; Validated
 1-206 2.63e-132

30S ribosomal protein S4; Validated


Pssm-ID: 235411 [Multi-domain]  Cd Length: 203  Bit Score: 369.43  E-value: 2.63e-132
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489049247   1 MARYLGPKLKLSRREGTDLFLKsGVRAIDSKCkletAPGQHGA--RKGRLSDYGLQLREKQKVRRIYGVLEKQFRNYYKE 78
Cdd:PRK05327   1 MARYTGPKCKLSRRLGVDLFKS-GKRCLKRKY----PPGQHGQrrRKPKLSDYGLQLREKQKLRRIYGVLEKQFRRYFKE 75

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489049247  79 AARLKGNTGENLLQLLEQRLDNVVYRMGFASTRAEARQLVSHKAILVNGRVVNIPSYVITPEDTVVIREKSKTQARIIAA 158
Cdd:PRK05327  76 AARRKGNTGENLLQLLESRLDNVVYRLGFAPTRRQARQLVSHGHILVNGKKVNIPSYRVKPGDVIEVREKSKKLPRIKEA 155

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*...
gi 489049247 159 LELAEQREKPTWVEVDGKKLEGSFKRLPERSDLSADINEQLIVELYSK 206
Cdd:PRK05327 156 LELAERRGVPDWLEVDAEKLEGTFKRLPEREEIPVPINEQLIVELYSK 203
rpsD_bact TIGR01017
ribosomal protein S4, bacterial/organelle type; This model finds organelle (chloroplast and ...
 3-206 9.85e-107

ribosomal protein S4, bacterial/organelle type; This model finds organelle (chloroplast and mitochondrial) ribosomal protein S4 as well as bacterial ribosomal protein S4. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 200066 [Multi-domain]  Cd Length: 200  Bit Score: 305.00  E-value: 9.85e-107
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489049247    3 RYLGPKLKLSRREGTDLFLKSgvRAIDSKCKleTAPGQHGARKGRLSDYGLQLREKQKVRRIYGVLEKQFRNYYKEAARL 82
Cdd:TIGR01017   1 RYTGPKFKLSRRLGVNLFGKS--RKLLLKRK--YPPGQHGQRRKKLSDYGLQLQEKQKLKFMYGITEKQFRKYFKEAKKL 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489049247   83 KGNTGENLLQLLEQRLDNVVYRMGFASTRAEARQLVSHKAILVNGRVVNIPSYVITPEDTVVIREKSKTQARIIAALELA 162
Cdd:TIGR01017  77 KGNTGENLLRLLESRLDNVVYRLGFAPTRFAARQLVSHGHILVNGKKVDIPSYQVRPGDIISIKEKSKKIPLVKENLETN 156

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....
gi 489049247  163 EQREKPTWVEVDGKKLEGSFKRLPERSDLSADINEQLIVELYSK 206
Cdd:TIGR01017 157 GQRNIPSWLEVDKKTLEGKVLRVPERSQLPLPINESLVVEYYSR 200
rps4 CHL00113
ribosomal protein S4; Reviewed
 1-205 5.53e-62

ribosomal protein S4; Reviewed


Pssm-ID: 177038 [Multi-domain]  Cd Length: 201  Bit Score: 191.58  E-value: 5.53e-62
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489049247   1 MARYLGPKLKLSRREGTdlflksgVRAIDSKckleTAPGQHG----ARKGRLSDYGLQLREKQKVRRIYGVLEKQFRNYY 76
Cdd:CHL00113   1 MSRYRGPRLKIIRRLGA-------LPGLTSK----TPRPGSDlrnqSRSGKKSQYRIRLEEKQKLRFNYGLTERQLLKYV 69

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489049247  77 KEAARLKGNTGENLLQLLEQRLDNVVYRMGFASTRAEARQLVSHKAILVNGRVVNIPSYVITPEDTVVIREKSKTQARII 156
Cdd:CHL00113  70 RIARKAKGSTGQVLLQLLEMRLDNILFRLGMAPTIPAARQLVNHGHILVNGRIVDIPSYRCKPKDIITVKDKQKSKNLIQ 149

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*....
gi 489049247 157 AALELAEQREKPTWVEVDGKKLEGSFKRLPERSDLSADINEQLIVELYS 205
Cdd:CHL00113 150 NNLESSPREELPNHLTLDKLQYKGLVNQIIDRKWVGLKINELLVVEYYS 198
Ribosomal_S4 pfam00163
Ribosomal protein S4/S9 N-terminal domain; This family includes small ribosomal subunit S9 ...
 3-95 7.91e-36

Ribosomal protein S4/S9 N-terminal domain; This family includes small ribosomal subunit S9 from prokaryotes and S16 from metazoans. This domain is predicted to bind to ribosomal RNA. This domain is composed of four helices in the known structure. However the domain is discontinuous in sequence and the alignment for this family contains only the first three helices.


Pssm-ID: 459696  Cd Length: 96  Bit Score: 121.12  E-value: 7.91e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489049247    3 RYLGPKLKLSRREGTDLFLKsGVRAIDSKCKLE-----TAPGQHGARKgRLSDYGLQLREKQKVRRIYGVLEKQFRNYYK 77
Cdd:pfam00163   1 RYKGPEQKLLRRVGFKLWKK-GRCHRELKVAQNrreypKYPGQHGKIR-KLSEYLLQLREKQKVRRKYGLLEKQLRKLYD 78

                          90
                  ....*....|....*...
gi 489049247   78 EAARLKGNTGENLLQLLE 95
Cdd:pfam00163  79 MGLKLKGVTGENLLQLLE 96
S4 cd00165
S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, ...
 96-150 1.83e-17

S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, charged residues that define a likely RNA-binding site; Found in stress proteins, ribosomal proteins and tRNA synthetases; This may imply a hitherto unrecognized functional similarity between these three protein classes.


Pssm-ID: 238095 [Multi-domain]  Cd Length: 70  Bit Score: 73.05  E-value: 1.83e-17
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 489049247  96 QRLDNVVYRMGFASTRAEARQLVSHKAILVNGRVVNIPSYVITPEDTVVIREKSK 150
Cdd:cd00165    1 MRLDKILARLGLAPSRSEARQLIKHGHVLVNGKVVTKPSYKVKPGDVIEVDGKSI 55
S4 pfam01479
S4 domain; The S4 domain is a small domain consisting of 60-65 amino acid residues that was ...
 96-143 3.03e-16

S4 domain; The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation. The S4 domain probably mediates binding to RNA.


Pssm-ID: 396182 [Multi-domain]  Cd Length: 48  Bit Score: 69.44  E-value: 3.03e-16
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 489049247   96 QRLDNVVYRMGFASTRAEARQLVSHKAILVNGRVVNIPSYVITPEDTV 143
Cdd:pfam01479   1 RRLDKVLARLGLASSRSQARQLIEHGRVLVNGKVVKDPSYRVKPGDEI 48
S4 smart00363
S4 RNA-binding domain;
96-150 1.61e-14

S4 RNA-binding domain;


Pssm-ID: 214638 [Multi-domain]  Cd Length: 60  Bit Score: 65.31  E-value: 1.61e-14
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 489049247    96 QRLDNVVYRMGFASTRAEARQLVSHKAILVNGRVVNIPSYVITPEDTVVIREKSK 150
Cdd:smart00363   1 RRLDKFLARLGLAPSRSQARRLIEQGRVKVNGKKVTKPSYIVKPGDVISVRGKEL 55
rps4p PRK04051
30S ribosomal protein S4P; Validated
 92-141 3.29e-12

30S ribosomal protein S4P; Validated


Pssm-ID: 179730 [Multi-domain]  Cd Length: 177  Bit Score: 62.20  E-value: 3.29e-12
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|
gi 489049247  92 QLLEQRLDNVVYRMGFASTRAEARQLVSHKAILVNGRVVNIPSYVITPED 141
Cdd:PRK04051  99 DILERRLQTIVYRKGLARTPKQARQFIVHGHIAVNGRRVTSPSYLVSVEE 148
uS4_arch TIGR01018
ribosomal protein uS4, eukaryotic/archaeal type; This model finds eukaryotic ribosomal protein ...
 94-140 1.32e-09

ribosomal protein uS4, eukaryotic/archaeal type; This model finds eukaryotic ribosomal protein S9 as well as archaeal ribosomal protein S4. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 273397 [Multi-domain]  Cd Length: 162  Bit Score: 54.74  E-value: 1.32e-09
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 489049247   94 LEQRLDNVVYRMGFASTRAEARQLVSHKAILVNGRVVNIPSYVITPE 140
Cdd:TIGR01018 102 LERRLQTQVYKKGLARTIHQARQLIVHGHIAVNGRVVTSPSYIVRLE 148
PTZ00155 PTZ00155
40S ribosomal protein S9; Provisional
 93-137 2.68e-05

40S ribosomal protein S9; Provisional


Pssm-ID: 185484 [Multi-domain]  Cd Length: 181  Bit Score: 43.14  E-value: 2.68e-05
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*
gi 489049247  93 LLEQRLDNVVYRMGFASTRAEARQLVSHKAILVNGRVVNIPSYVI 137
Cdd:PTZ00155 104 LLERRLQTKVFKLGLAKSIHHARVLIRQRHIRVGKQIVDIPSFLV 148
YqxC COG1189
Predicted rRNA methylase YqxC, contains S4 and FtsJ domains [Translation, ribosomal structure ...
 96-148 2.73e-05

Predicted rRNA methylase YqxC, contains S4 and FtsJ domains [Translation, ribosomal structure and biogenesis];


Pssm-ID: 440802 [Multi-domain]  Cd Length: 248  Bit Score: 43.51  E-value: 2.73e-05
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|...
gi 489049247  96 QRLDNVVYRMGFASTRAEARQLVSHKAILVNGRVVNIPSYVITPEDTVVIREK 148
Cdd:COG1189    1 ERLDVLLVERGLAESREKAQRLIMAGRVLVNGQVVDKPGTKVPEDAEIEVKGE 53
PLN00189 PLN00189
40S ribosomal protein S9; Provisional
 92-137 2.97e-05

40S ribosomal protein S9; Provisional


Pssm-ID: 177783 [Multi-domain]  Cd Length: 194  Bit Score: 43.20  E-value: 2.97e-05
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*.
gi 489049247  92 QLLEQRLDNVVYRMGFASTRAEARQLVSHKAILVNGRVVNIPSYVI 137
Cdd:PLN00189 105 NFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGKQIVNVPSFMV 150
TyrS COG0162
Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]; Tyrosyl-tRNA ...
 83-158 2.91e-03

Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]; Tyrosyl-tRNA synthetase is part of the Pathway/BioSystem: Aminoacyl-tRNA synthetases


Pssm-ID: 439932 [Multi-domain]  Cd Length: 409  Bit Score: 37.71  E-value: 2.91e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489049247  83 KGNTGENLLQLLEQrldnvvyrMGFASTRAEARQLVSHKAILVNGRVVNIPSYVITPED-----TVVIREKSKTQARIIA 157
Cdd:COG0162  337 AAEGGIPLVDLLVE--------AGLAASKSEARRLIKQGGVSVNGEKVTDPDAVLTAGDllhggYLVLRVGKKKFALVKL 408


                 .
gi 489049247 158 A 158
Cdd:COG0162  409 K 409
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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