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Conserved domains on  [gi|489051023|ref|WP_002961231|]
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MULTISPECIES: ATP-binding protein [Pseudoalteromonas]

Protein Classification

ATP-binding protein( domain architecture ID 12153064)

ATP-binding protein with an AAA (ATPases Associated with various cellular Activities) domain ; similar to Homo sapiens NEDD4-binding protein 2-like 1/2

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
AAA_33 pfam13671
AAA domain; This family of domains contain only a P-loop motif, that is characteriztic of the ...
4-143 3.07e-14

AAA domain; This family of domains contain only a P-loop motif, that is characteriztic of the AAA superfamily. Many of the proteins in this family are just short fragments so there is no Walker B motif.


:

Pssm-ID: 463952 [Multi-domain]  Cd Length: 143  Bit Score: 65.02  E-value: 3.07e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489051023    4 VFILRGLPGSGKSYYAQSLADELGgadesqYLICSTDDY----FNNEQ--GEYHFDKFKLPQFHNLNLARfiNALAQGIP 77
Cdd:pfam13671   1 LILLVGLPGSGKSTLARRLLEELG------AVRLSSDDErkrlFGEGRpsISYYTDATDRTYERLHELAR--IALRAGRP 72
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489051023   78 lVIVDNTNIKKWEFIAYSQAAVALGYQVKEVIV----GEVKDKAMQHLYAKRNSHNVPLKTISKMAYMFE 143
Cdd:pfam13671  73 -VILDATNLRRDERARLLALAREYGVPVRIVVFeapeEVLRERLAARARAGGDPSDVPEEVLDRQKARFE 141
 
Name Accession Description Interval E-value
AAA_33 pfam13671
AAA domain; This family of domains contain only a P-loop motif, that is characteriztic of the ...
4-143 3.07e-14

AAA domain; This family of domains contain only a P-loop motif, that is characteriztic of the AAA superfamily. Many of the proteins in this family are just short fragments so there is no Walker B motif.


Pssm-ID: 463952 [Multi-domain]  Cd Length: 143  Bit Score: 65.02  E-value: 3.07e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489051023    4 VFILRGLPGSGKSYYAQSLADELGgadesqYLICSTDDY----FNNEQ--GEYHFDKFKLPQFHNLNLARfiNALAQGIP 77
Cdd:pfam13671   1 LILLVGLPGSGKSTLARRLLEELG------AVRLSSDDErkrlFGEGRpsISYYTDATDRTYERLHELAR--IALRAGRP 72
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489051023   78 lVIVDNTNIKKWEFIAYSQAAVALGYQVKEVIV----GEVKDKAMQHLYAKRNSHNVPLKTISKMAYMFE 143
Cdd:pfam13671  73 -VILDATNLRRDERARLLALAREYGVPVRIVVFeapeEVLRERLAARARAGGDPSDVPEEVLDRQKARFE 141
COG4639 COG4639
Predicted kinase [General function prediction only];
1-143 7.65e-11

Predicted kinase [General function prediction only];


Pssm-ID: 443677 [Multi-domain]  Cd Length: 145  Bit Score: 56.38  E-value: 7.65e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489051023   1 MKQVFILRGLPGSGKSYYAQSLADElggadesqYLICSTDDY----FNNEqgeyhfdkfkLPQFHN---LNLARFI--NA 71
Cdd:COG4639    1 MLSLVVLIGLPGSGKSTFARRLFAP--------TEVVSSDDIrallGGDE----------NDQSAWgdvFQLAHEIarAR 62
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 489051023  72 LAQGIPlVIVDNTNIKKWEFIAYSQAAVALGYQVKEVIVgEVKDKAMQhlyaKRN---SHNVPLKTISKMAYMFE 143
Cdd:COG4639   63 LRAGRL-TVVDATNLQREARRRLLALARAYGALVVAVVL-DVPLEVCL----ARNaarDRQVPEEVIRRMLRRLR 131
pseT PHA02530
polynucleotide kinase; Provisional
1-141 1.20e-10

polynucleotide kinase; Provisional


Pssm-ID: 222856 [Multi-domain]  Cd Length: 300  Bit Score: 57.72  E-value: 1.20e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489051023   1 MKQVFILRGLPGSGKSYYAQSLADELGGadesqYLICSTDDY----FN-NEQGEYHFDKFKLPQFHNLNLARFINALAQG 75
Cdd:PHA02530   1 MMKIILTVGVPGSGKSTWAREFAAKNPK-----AVNVNRDDLrqslFGhGEWGEYKFTKEKEDLVTKAQEAAALAALKSG 75
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 489051023  76 IPlVIVDNTNIKKWEFIAYSQAAVALGYQVKEVIVGEVKDKAMQHLYaKRNSHNVPLKTISKMAYM 141
Cdd:PHA02530  76 KS-VIISDTNLNPERRRKWKELAKELGAEFEEKVFDVPVEELVKRNR-KRGERAVPEDVLRSMFKQ 139
AAA smart00382
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ...
2-83 3.41e-03

ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.


Pssm-ID: 214640 [Multi-domain]  Cd Length: 148  Bit Score: 35.81  E-value: 3.41e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489051023     2 KQVFILRGLPGSGKSYYAQSLADELGGADESQYLI-CSTDDYFNNEQGEYHFDKFKLPQFHNLNLARFINALAQ--GIPL 78
Cdd:smart00382   2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIdGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARklKPDV 81

                   ....*
gi 489051023    79 VIVDN 83
Cdd:smart00382  82 LILDE 86
 
Name Accession Description Interval E-value
AAA_33 pfam13671
AAA domain; This family of domains contain only a P-loop motif, that is characteriztic of the ...
4-143 3.07e-14

AAA domain; This family of domains contain only a P-loop motif, that is characteriztic of the AAA superfamily. Many of the proteins in this family are just short fragments so there is no Walker B motif.


Pssm-ID: 463952 [Multi-domain]  Cd Length: 143  Bit Score: 65.02  E-value: 3.07e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489051023    4 VFILRGLPGSGKSYYAQSLADELGgadesqYLICSTDDY----FNNEQ--GEYHFDKFKLPQFHNLNLARfiNALAQGIP 77
Cdd:pfam13671   1 LILLVGLPGSGKSTLARRLLEELG------AVRLSSDDErkrlFGEGRpsISYYTDATDRTYERLHELAR--IALRAGRP 72
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489051023   78 lVIVDNTNIKKWEFIAYSQAAVALGYQVKEVIV----GEVKDKAMQHLYAKRNSHNVPLKTISKMAYMFE 143
Cdd:pfam13671  73 -VILDATNLRRDERARLLALAREYGVPVRIVVFeapeEVLRERLAARARAGGDPSDVPEEVLDRQKARFE 141
COG4639 COG4639
Predicted kinase [General function prediction only];
1-143 7.65e-11

Predicted kinase [General function prediction only];


Pssm-ID: 443677 [Multi-domain]  Cd Length: 145  Bit Score: 56.38  E-value: 7.65e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489051023   1 MKQVFILRGLPGSGKSYYAQSLADElggadesqYLICSTDDY----FNNEqgeyhfdkfkLPQFHN---LNLARFI--NA 71
Cdd:COG4639    1 MLSLVVLIGLPGSGKSTFARRLFAP--------TEVVSSDDIrallGGDE----------NDQSAWgdvFQLAHEIarAR 62
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 489051023  72 LAQGIPlVIVDNTNIKKWEFIAYSQAAVALGYQVKEVIVgEVKDKAMQhlyaKRN---SHNVPLKTISKMAYMFE 143
Cdd:COG4639   63 LRAGRL-TVVDATNLQREARRRLLALARAYGALVVAVVL-DVPLEVCL----ARNaarDRQVPEEVIRRMLRRLR 131
pseT PHA02530
polynucleotide kinase; Provisional
1-141 1.20e-10

polynucleotide kinase; Provisional


Pssm-ID: 222856 [Multi-domain]  Cd Length: 300  Bit Score: 57.72  E-value: 1.20e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489051023   1 MKQVFILRGLPGSGKSYYAQSLADELGGadesqYLICSTDDY----FN-NEQGEYHFDKFKLPQFHNLNLARFINALAQG 75
Cdd:PHA02530   1 MMKIILTVGVPGSGKSTWAREFAAKNPK-----AVNVNRDDLrqslFGhGEWGEYKFTKEKEDLVTKAQEAAALAALKSG 75
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 489051023  76 IPlVIVDNTNIKKWEFIAYSQAAVALGYQVKEVIVGEVKDKAMQHLYaKRNSHNVPLKTISKMAYM 141
Cdd:PHA02530  76 KS-VIISDTNLNPERRRKWKELAKELGAEFEEKVFDVPVEELVKRNR-KRGERAVPEDVLRSMFKQ 139
COG0645 COG0645
Predicted kinase, contains AAA domain [General function prediction only];
4-108 1.10e-07

Predicted kinase, contains AAA domain [General function prediction only];


Pssm-ID: 440410 [Multi-domain]  Cd Length: 164  Bit Score: 47.99  E-value: 1.10e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489051023   4 VFILRGLPGSGKSYYAQSLADELGGA-----DESQYL----ICSTDDYFNNEQGEYHfdkfKLpqfhnLNLARFInaLAQ 74
Cdd:COG0645    1 LILVCGLPGSGKSTLARALAERLGAVrlrsdVVRKRLfgagLAPLERSPEATARTYA----RL-----LALAREL--LAA 69
                         90       100       110
                 ....*....|....*....|....*....|....
gi 489051023  75 GIPlVIVDNTNIKKWEFIAYSQAAVALGYQVKEV 108
Cdd:COG0645   70 GRS-VILDATFLRRAQREAFRALAEEAGAPFVLI 102
Kti12 COG4088
tRNA uridine 5-carbamoylmethylation protein Kti12 (Killer toxin insensitivity protein) ...
6-103 3.35e-05

tRNA uridine 5-carbamoylmethylation protein Kti12 (Killer toxin insensitivity protein) [Translation, ribosomal structure and biogenesis, Defense mechanisms];


Pssm-ID: 443264 [Multi-domain]  Cd Length: 179  Bit Score: 41.64  E-value: 3.35e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489051023   6 ILRGLPGSGKSYYAQSLADELGGADESQYLIcSTDDYFNNEQGEYHFDKFKLPQFHNLNLARFINALAQGIpLVIVDNTN 85
Cdd:COG4088    8 ILTGPPGSGKTTFAKALAQRLYAEGIAVALL-HSDDFRRFLVNESFPKETYEEVVEDVRTTTADNALDNGY-SVIVDGTF 85
                         90       100
                 ....*....|....*....|...
gi 489051023  86 IKKW-----EFIAYSQAAVALGY 103
Cdd:COG4088   86 YYRSwqrdfRNLAKHKAPIHIIY 108
GntK COG3265
Gluconate kinase [Carbohydrate transport and metabolism]; Gluconate kinase is part of the ...
3-27 9.76e-04

Gluconate kinase [Carbohydrate transport and metabolism]; Gluconate kinase is part of the Pathway/BioSystem: Non-phosphorylated Entner-Doudoroff pathway


Pssm-ID: 442496 [Multi-domain]  Cd Length: 164  Bit Score: 37.42  E-value: 9.76e-04
                         10        20
                 ....*....|....*....|....*
gi 489051023   3 QVFILRGLPGSGKSYYAQSLADELG 27
Cdd:COG3265    2 MVIVVMGVSGSGKSTVGQALAERLG 26
AAA smart00382
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ...
2-83 3.41e-03

ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.


Pssm-ID: 214640 [Multi-domain]  Cd Length: 148  Bit Score: 35.81  E-value: 3.41e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489051023     2 KQVFILRGLPGSGKSYYAQSLADELGGADESQYLI-CSTDDYFNNEQGEYHFDKFKLPQFHNLNLARFINALAQ--GIPL 78
Cdd:smart00382   2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIdGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARklKPDV 81

                   ....*
gi 489051023    79 VIVDN 83
Cdd:smart00382  82 LILDE 86
Udk COG0572
Uridine kinase [Nucleotide transport and metabolism]; Uridine kinase is part of the Pathway ...
9-75 4.06e-03

Uridine kinase [Nucleotide transport and metabolism]; Uridine kinase is part of the Pathway/BioSystem: Pyrimidine salvage


Pssm-ID: 440337 [Multi-domain]  Cd Length: 206  Bit Score: 35.97  E-value: 4.06e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 489051023   9 GLPGSGKSYYAQSLADELgGADESQYLicSTDDYFNN-------EQGEYHFDkfkLPQ-FHNLNLARFINALAQG 75
Cdd:COG0572   14 GPSGSGKTTFARRLAEQL-GADKVVVI--SLDDYYKDrehlpldERGKPNFD---HPEaFDLDLLNEHLEPLKAG 82
RNA_helicase pfam00910
RNA helicase; This family includes RNA helicases thought to be involved in duplex unwinding ...
6-49 5.07e-03

RNA helicase; This family includes RNA helicases thought to be involved in duplex unwinding during viral RNA replication. Members of this family are found in a variety of single stranded RNA viruses.


Pssm-ID: 459992  Cd Length: 102  Bit Score: 34.50  E-value: 5.07e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 489051023    6 ILRGLPGSGKSYYAQSLADELGGADESQ----YLICSTDDYFNNEQGE 49
Cdd:pfam00910   2 WLYGPPGCGKSTLAKYLARALLKKLGLPkdsvYSRNPDDDFWDGYTGQ 49
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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